Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TMEM39B	55116	hgsc.bcm.edu	hg19	1	32540608	32540608	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	TMEM39B	NM_018056	exon2	c.G61T	p.G21X	GAGCCGGGATCCT	.	68.0	44.0	62.0	0.0	.	66	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34238304	34238304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	CSMD2_ENST00000373381,colon,carcinoma,-1,2	CSMD2	NM_052896	exon13	c.G1592A	p.R531Q	TCCCTCCGGCCAT	.	50.0	39.0	60.0	0.0	.	946	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65310503	65310503	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	JAK1,NS,carcinoma,0,2	JAK1	NM_002227	exon16	c.A2185T	p.S729C	ACTCACTGTCGAT	.	96.0	72.0	125.0	0.0	.	209	.	.	Atlas-SNP
LHX8	431707	hgsc.bcm.edu	hg19	1	75602886	75602886	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	LHX8	NM_001001933	exon4	c.T207A	p.P69P	CTGCCCTCCTGGC	.	153.0	69.0	219.0	0.0	.	73	.	.	Atlas-SNP
RUSC1-AS1	284618	hgsc.bcm.edu	hg19	1	155291207	155291207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	.	NM_001039517	exon2	c.C73G	p.P25A	GGCCCGGACCTCT	.	109.0	39.0	127.0	0.0	.	.	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179632575	179632575	+	Silent	SNP	A	A	G	rs147178825		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	TDRD5	NM_001199085	exon16	c.A2598G	p.P866P	TAAGCCAGAAGTA	.	93.0	29.0	126.0	0.0	.	149	.	A|1.000;G|0.000	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190250879	190250879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	FAM5C	NM_199051	exon3	c.G238A	p.E80K	CAAACTCCCTGAA	.	184.0	69.0	224.0	0.0	.	343	.	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214816385	214816385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	CENPF,NS,carcinoma,0,2	CENPF	NM_016343	exon12	c.G4704T	p.E1568D	AGAAGAGAAAATG	.	125.0	33.0	138.0	0.0	.	321	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228537683	228537683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	OBSCN	NM_001271223	exon87	c.G21112T	p.D7038Y	GGTGTGGACTCTG	.	43.0	15.0	51.0	0.0	.	2142	.	.	Atlas-SNP
SMYD3	64754	hgsc.bcm.edu	hg19	1	245912933	245912933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	SMYD3	NM_001167740	exon12	c.G1219A	p.E407K	TGTGTTCTCTGCC	.	42.0	10.0	63.0	0.0	.	77	.	.	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247071004	247071004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	AHCTF1	NM_015446	exon5	c.A640G	p.M214V	GTCTCATTACACT	.	153.0	40.0	207.0	0.0	.	187	.	.	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	hg19	1	248112399	248112399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	OR2L8	NM_001001963	exon1	c.G240A	p.M80I	TAAGATGGCATCT	.	44.0	18.0	99.0	0.0	.	92	.	.	Atlas-SNP
CCDC142	84865	hgsc.bcm.edu	hg19	2	74709806	74709806	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	CCDC142	NM_032779	exon1	c.G159A	p.G53G	CGGCGTCCCTCCA	.	59.0	21.0	90.0	0.0	.	40	.	.	Atlas-SNP
MAP4K4	9448	hgsc.bcm.edu	hg19	2	102477449	102477449	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	MAP4K4	NM_145686	exon16	c.1773+1G>T	.	CCACAGGTAGCGA	.	29.0	8.0	37.0	0.0	.	111	.	.	Atlas-SNP
PRPF40A	55660	hgsc.bcm.edu	hg19	2	153526802	153526802	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	PRPF40A	NM_017892	exon15	c.G1573T	p.E525X	GGGCTTCAGACCA	.	80.0	26.0	87.0	0.0	.	149	.	.	Atlas-SNP
GRB14	2888	hgsc.bcm.edu	hg19	2	165381556	165381556	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	GRB14	NM_004490	exon5	c.A636T	p.A212A	TTCAGTTGCAAAA	.	323.0	98.0	431.0	0.0	.	73	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	hg19	2	189859318	189859318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	COL3A1,NS,carcinoma,-1,1	COL3A1	NM_000090	exon19	c.C1345T	p.R449C	GGTGAACGCGTAA	.	180.0	63.0	210.0	0.0	.	292	.	.	Atlas-SNP
NAB1	4664	hgsc.bcm.edu	hg19	2	191548503	191548503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	NAB1	NM_005966	exon7	c.T1045C	p.F349L	ACACTCTTCCAGC	.	44.0	14.0	62.0	0.0	.	31	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	bycluster	TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	CTNNB1,gallbladder,other,0,359	CTNNB1	NM_001098209	exon3	c.C98G	p.S33C	TGGACTCTGGAAT	.	92.0	38.0	136.0	0.0	.	4904	.	.	Atlas-SNP
LTF	4057	hgsc.bcm.edu	hg19	3	46501175	46501175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	LTF,rectum,carcinoma,0,1	LTF	NM_002343	exon2	c.T178C	p.S60P	TGGGGGAGTCTCT	.	73.0	4.0	89.0	2.0	.	98	.	.	Atlas-SNP
ALS2CL	259173	hgsc.bcm.edu	hg19	3	46722032	46722032	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ALS2CL	NM_001190707	exon15	c.1437-1G>T	.	TCACCTCTGGAAG	.	13.0	4.0	20.0	0.0	.	78	.	.	Atlas-SNP
CCDC66	285331	hgsc.bcm.edu	hg19	3	56627035	56627035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	CCDC66	NM_001141947	exon8	c.A974C	p.K325T	CTGTGAAACAAGA	.	130.0	48.0	161.0	0.0	.	145	.	.	Atlas-SNP
ETV5	2119	hgsc.bcm.edu	hg19	3	185797732	185797732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ETV5	NM_004454	exon7	c.C524T	p.A175V	GCGGGGGCGGGGC	.	43.0	15.0	53.0	0.0	.	106	.	.	Atlas-SNP
SLC34A2	10568	hgsc.bcm.edu	hg19	4	25676185	25676185	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	SLC34A2	NM_006424	exon12	c.C1392G	p.G464G	CATCGGCACCACC	.	116.0	47.0	161.0	0.0	.	93	.	.	Atlas-SNP
GYPA	2993	hgsc.bcm.edu	hg19	4	145035877	145035877	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	GYPA	NM_002099	exon6	c.A401T	p.D134V	GGCACGTCTGTGT	.	64.0	27.0	104.0	0.0	.	27	.	.	Atlas-SNP
RXFP1	59350	hgsc.bcm.edu	hg19	4	159568206	159568206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	RXFP1	NM_001253727	exon16	c.A1690G	p.I564V	ATTTGGATTACTG	.	71.0	33.0	79.0	0.0	.	98	.	.	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	hg19	5	123980027	123980027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZNF608	NM_020747	exon5	c.T4033A	p.Y1345N	GCAAGTACTGTAT	.	106.0	24.0	108.0	0.0	.	117	.	.	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	hg19	5	123980028	123980028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZNF608	NM_020747	exon5	c.G4032T	p.Q1344H	CAAGTACTGTATG	.	108.0	24.0	108.0	0.0	.	117	.	.	Atlas-SNP
PCDHGB3	56102	hgsc.bcm.edu	hg19	5	140750610	140750610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	PCDHGB3	NM_018924	exon1	c.G649A	p.G217R	GTGGATGGGGGCG	.	94.0	21.0	92.0	0.0	.	168	.	.	Atlas-SNP
GPLD1	2822	hgsc.bcm.edu	hg19	6	24429303	24429303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	GPLD1	NM_001503	exon25	c.G2480A	p.R827Q	GAGAGTCGGGCTC	.	59.0	11.0	65.0	0.0	.	91	.	.	Atlas-SNP
HIST1H2AG	8969	hgsc.bcm.edu	hg19	6	27101233	27101233	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	HIST1H2AG	NM_021064	exon1	c.A383T	p.K128M	AGGCGAAGGGCAA	.	133.0	43.0	203.0	0.0	.	37	.	.	Atlas-SNP
NRM	11270	hgsc.bcm.edu	hg19	6	30656498	30656498	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	NRM	NM_001270707	exon4	c.G747T	p.R249R	CTGGGCCCGGAGG	.	85.0	21.0	109.0	0.0	.	7	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32036842	32036842	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	TNXB	NM_019105	exon16	c.T5659C	p.L1887L	CTGTCAACTCCCC	.	63.0	22.0	71.0	0.0	.	553	.	.	Atlas-SNP
PXT1	222659	hgsc.bcm.edu	hg19	6	36359627	36359627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	PXT1	NM_152990	exon5	c.G325A	p.A109T	CTAGTGCATCTCT	.	80.0	17.0	84.0	0.0	.	6	.	.	Atlas-SNP
CRISP1	167	hgsc.bcm.edu	hg19	6	49814359	49814359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	CRISP1	NM_001205220	exon5	c.G309A	p.M103I	CATATGCATATTT	.	73.0	27.0	72.0	0.0	.	45	.	.	Atlas-SNP
VGLL2	245806	hgsc.bcm.edu	hg19	6	117589350	117589350	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	VGLL2	NM_182645	exon2	c.A87C	p.L29L	GAAACTAGCCTAT	.	159.0	56.0	193.0	0.0	.	18	.	.	Atlas-SNP
HSF2	3298	hgsc.bcm.edu	hg19	6	122749064	122749064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	HSF2	NM_004506	exon11	c.T1193C	p.V398A	GTTCTGTGCAGAT	.	156.0	55.0	216.0	0.0	.	43	.	.	Atlas-SNP
IGFBP1	3484	hgsc.bcm.edu	hg19	7	45931536	45931536	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	IGFBP1,NS,carcinoma,0,1	IGFBP1	NM_000596	exon3	c.C525G	p.P175P	GGAGCCCTGCCGA	.	48.0	19.0	72.0	0.0	.	19	.	.	Atlas-SNP
TRIM56	81844	hgsc.bcm.edu	hg19	7	100731596	100731596	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	TRIM56	NM_030961	exon3	c.C1003T	p.L335L	AGGCAGCTGCAGG	.	48.0	11.0	26.0	0.0	.	123	.	.	Atlas-SNP
PDP1	54704	hgsc.bcm.edu	hg19	8	94935709	94935709	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	PDP1	NM_001161780	exon3	c.G1497A	p.E499E	ATTTGAGGATCAG	.	122.0	72.0	71.0	0.0	.	97	.	.	Atlas-SNP
TONSL	4796	hgsc.bcm.edu	hg19	8	145666384	145666384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	TONSL	NM_013432	exon8	c.G976C	p.D326H	GAAAGTCTCCTGC	.	110.0	49.0	74.0	0.0	.	128	.	.	Atlas-SNP
IZUMO3	100129669	hgsc.bcm.edu	hg19	9	24545239	24545239	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	.	NM_001271706	exon2	c.T272A	p.F91Y	TTATAAAATTCAT	.	98.0	34.0	113.0	0.0	.	.	.	.	Atlas-SNP
ACO1	48	hgsc.bcm.edu	hg19	9	32431729	32431729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ACO1	NM_002197	exon15	c.A1739G	p.K580R	ATGCAAAGGGACA	.	78.0	37.0	102.0	0.0	.	149	.	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	hg19	9	139395113	139395113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	NOTCH1	NM_017617	exon31	c.A5825T	p.D1942V	GCGGCATCAGAGC	.	46.0	10.0	55.0	0.0	.	1980	.	.	Atlas-SNP
MASTL	84930	hgsc.bcm.edu	hg19	10	27454042	27454042	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	MASTL	NM_032844	exon5	c.A603G	p.R201R	ACCTAGACAAGAT	.	124.0	34.0	173.0	0.0	.	81	.	.	Atlas-SNP
NRG3	10718	hgsc.bcm.edu	hg19	10	84745207	84745207	+	Missense_Mutation	SNP	G	G	T	rs150401464	byfrequency;alternate_allele	TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	NRG3	NM_001010848	exon9	c.G1937T	p.R646L	CCAGACGGTCAGA	.	67.0	26.0	105.0	0.0	.	301	.	G|1.000;A|0.000	Atlas-SNP
TBC1D12	23232	hgsc.bcm.edu	hg19	10	96162647	96162647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	TBC1D12	NM_015188	exon1	c.G277A	p.G93S	CCCGCTGGCCAGG	.	30.0	11.0	34.0	0.0	.	51	.	.	Atlas-SNP
CYP2C8	1558	hgsc.bcm.edu	hg19	10	96826978	96826978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	CYP2C8	NM_000770	exon3	c.G468C	p.L156F	TTTTCTCAACTCC	.	106.0	25.0	117.0	0.0	.	73	.	.	Atlas-SNP
ZFYVE27	118813	hgsc.bcm.edu	hg19	10	99509255	99509255	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZFYVE27	NM_001002261	exon5	c.A576T	p.T192T	GGGCACAGTCTGC	.	51.0	21.0	58.0	0.0	.	31	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129903317	129903317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	MKI67	NM_002417	exon13	c.G6787T	p.G2263W	CTTTCCCTACTGA	.	68.0	22.0	82.0	0.0	.	363	.	.	Atlas-SNP
POU2AF1	5450	hgsc.bcm.edu	hg19	11	111228301	111228301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	POU2AF1	NM_006235	exon4	c.G325A	p.V109M	GGGGCACATACTC	.	130.0	45.0	178.0	0.0	.	23	.	.	Atlas-SNP
AMICA1	120425	hgsc.bcm.edu	hg19	11	118067460	118067460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	AMICA1	NM_001098526	exon9	c.A1082G	p.Y361C	GTCATGTAGGTGG	.	52.0	15.0	68.0	0.0	.	49	.	.	Atlas-SNP
PANX3	116337	hgsc.bcm.edu	hg19	11	124489377	124489377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	PANX3	NM_052959	exon4	c.G725A	p.C242Y	TCAGCTGCTCCAT	.	85.0	26.0	104.0	0.0	.	52	.	.	Atlas-SNP
DENND5B	160518	hgsc.bcm.edu	hg19	12	31586180	31586180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	DENND5B	NM_144973	exon8	c.G2015A	p.R672H	ACCCAGCGACTGA	.	49.0	13.0	77.0	0.0	.	114	.	.	Atlas-SNP
KRT81	3887	hgsc.bcm.edu	hg19	12	52681031	52681031	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	KRT81,NS,carcinoma,0,1	KRT81	NM_002281	exon7	c.C1102T	p.L368L	CGGCCAGCTTGCA	.	68.0	29.0	95.0	0.0	.	46	.	.	Atlas-SNP
ZNF140	7699	hgsc.bcm.edu	hg19	12	133682814	133682814	+	Silent	SNP	T	T	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZNF140	NM_003440	exon5	c.T951G	p.T317T	CCTTACTCGACAT	.	98.0	31.0	91.0	0.0	.	18	.	.	Atlas-SNP
ZC3H13	23091	hgsc.bcm.edu	hg19	13	46541986	46541986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZC3H13	NM_015070	exon15	c.G3974T	p.R1325L	GCATCTCGGTCCC	.	62.0	27.0	52.0	0.0	.	197	.	.	Atlas-SNP
VIPAS39	63894	hgsc.bcm.edu	hg19	14	77900204	77900204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	.	NM_001193314	exon16	c.A1160G	p.D387G	AGGGCATCTACAT	.	174.0	51.0	198.0	0.0	.	.	.	.	Atlas-SNP
VIPAS39	63894	hgsc.bcm.edu	hg19	14	77900210	77900210	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	.	NM_001193314	exon16	c.A1154C	p.D385A	TCTACATCATTCC	.	172.0	52.0	202.0	0.0	.	.	.	.	Atlas-SNP
PPP2R5C	5527	hgsc.bcm.edu	hg19	14	102285330	102285330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	PPP2R5C	NM_001161725	exon3	c.G95A	p.G32E	TCTAGGGAACAAG	.	68.0	16.0	77.0	0.0	.	74	.	.	Atlas-SNP
CEP170B	283638	hgsc.bcm.edu	hg19	14	105359964	105359964	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	.	NM_001112726	exon15	c.C4143T	p.D1381D	TGAGGACGCCCTG	.	125.0	11.0	118.0	0.0	.	.	.	.	Atlas-SNP
SLC24A5	283652	hgsc.bcm.edu	hg19	15	48431227	48431227	+	Silent	SNP	C	C	T	rs112771038		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	SLC24A5	NM_205850	exon7	c.C933T	p.S311S	ATTATCCCTTCCT	.	172.0	53.0	229.0	0.0	.	64	.	T|1.000;|0.000	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54542554	54542554	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	UNC13C	NM_001080534	exon6	c.C3360T	p.G1120G	GTGGGGCATTGCA	.	77.0	21.0	76.0	0.0	.	674	.	.	Atlas-SNP
ZNF768	79724	hgsc.bcm.edu	hg19	16	30536644	30536644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZNF768	NM_024671	exon2	c.G817A	p.G273S	TGGAGCCCCGCCC	.	42.0	19.0	40.0	0.0	.	28	.	.	Atlas-SNP
SPG7	6687	hgsc.bcm.edu	hg19	16	89620237	89620237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	SPG7	NM_003119	exon15	c.G1972T	p.A658S	CGCATCGCCTACT	.	68.0	4.0	102.0	0.0	.	75	.	.	Atlas-SNP
ZZEF1	23140	hgsc.bcm.edu	hg19	17	4016072	4016072	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZZEF1	NM_015113	exon5	c.G897A	p.R299R	CAGGTGCCTAAGC	.	41.0	13.0	60.0	0.0	.	195	.	.	Atlas-SNP
GID4	79018	hgsc.bcm.edu	hg19	17	17962265	17962265	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	C17orf39,NS,carcinoma,0,1	.	NM_024052	exon4	c.C690T	p.Y230Y	AGACTACGTCTTC	.	82.0	4.0	87.0	0.0	.	.	.	.	Atlas-SNP
AANAT	15	hgsc.bcm.edu	hg19	17	74465835	74465835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	AANAT	NM_001166579	exon7	c.G542A	p.G181D	GCAGGGGCCCCAT	.	46.0	13.0	63.0	0.0	.	7	.	.	Atlas-SNP
TMC6	11322	hgsc.bcm.edu	hg19	17	76120700	76120700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	TMC6	NM_001127198	exon8	c.C796G	p.L266V	CCACCAGCAGCAG	.	74.0	4.0	73.0	0.0	.	42	.	.	Atlas-SNP
PRODH2	58510	hgsc.bcm.edu	hg19	19	36291013	36291013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	PRODH2	NM_021232	exon11	c.G1538A	p.R513H	TCCCTGCGGGCAC	.	50.0	4.0	72.0	0.0	.	68	.	.	Atlas-SNP
SIGLEC9	27180	hgsc.bcm.edu	hg19	19	51630327	51630327	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	SIGLEC9	NM_001198558	exon4	c.A789G	p.P263P	ACTCCCAGAGGGC	.	46.0	16.0	64.0	0.0	.	85	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53058362	53058362	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZNF808	NM_001039886	exon5	c.T2193A	p.G731G	TAGTGGTGAGAAA	.	95.0	27.0	134.0	0.0	.	81	.	.	Atlas-SNP
SLC2A10	81031	hgsc.bcm.edu	hg19	20	45354676	45354676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	SLC2A10	NM_030777	exon2	c.A1001G	p.N334S	TGCCCAATGCCAC	.	35.0	11.0	34.0	0.0	.	75	.	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	hg19	20	46265302	46265302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	NCOA3	NM_001174088	exon12	c.G2202T	p.Q734H	CAAGCAGGAGCAG	.	130.0	39.0	140.0	0.0	.	156	.	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	hg19	20	46265303	46265303	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	NCOA3	NM_001174088	exon12	c.G2203T	p.E735X	AAGCAGGAGCAGC	.	129.0	38.0	143.0	0.0	.	156	.	.	Atlas-SNP
SEPT5	5413	hgsc.bcm.edu	hg19	22	19707954	19707954	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	SEPT5	NM_001009939	exon5	c.C501T	p.Y167Y	CCTATACTTCATC	.	79.0	24.0	99.0	0.0	.	32	.	.	Atlas-SNP
ZNF280B	140883	hgsc.bcm.edu	hg19	22	22842882	22842882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	ZNF280B	NM_080764	exon4	c.C842T	p.P281L	ACAATGGGATTTT	.	71.0	35.0	96.0	0.0	.	67	.	.	Atlas-SNP
MPPED1	758	hgsc.bcm.edu	hg19	22	43870642	43870642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	MPPED1	NM_001044370	exon4	c.G433C	p.V145L	AAGATCGTGATCG	.	50.0	23.0	54.0	0.0	.	59	.	.	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	hg19	X	54321102	54321102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	WNK3	NM_001002838	exon8	c.T1577C	p.L526S	AGGGGTAAAGTTG	.	43.0	27.0	42.0	0.0	.	218	.	.	Atlas-SNP
AVPR2	554	hgsc.bcm.edu	hg19	X	153171432	153171432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	AVPR2	NM_001146151	exon2	c.C472T	p.R158W	TGGAACCGGCCGG	.	16.0	12.0	18.0	0.0	.	43	.	.	Atlas-SNP
PLXNA3	55558	hgsc.bcm.edu	hg19	X	153691734	153691734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	PLXNA3	NM_017514	exon5	c.G1318T	p.V440L	GCTCAGGTGCGGG	.	33.0	21.0	36.0	0.0	.	156	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13707	13707	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	.	ENST00000361567	exon1	c.G1371A	p.L457L	ACGCCTGGCAGCC	.	38.0	7.0	22.0	0.0	.	.	.	.	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	hg19	1	27106484	27106484	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	ARID1A,NS,carcinoma,0,1	ARID1A	NM_006015	exon20	c.6094delG	p.E2032fs	.	.	103.0	69.0	130.0	0.0	.	842	.	.	Atlas-INDEL
YLPM1	56252	hgsc.bcm.edu	hg19	14	75248349	75248357	+	In_Frame_Del	DEL	CCTCCAGTG	CCTCCAGTG	-	novel		TCGA-DD-AAVX-01A-11D-A40R-10	TCGA-DD-AAVX-10A-01D-A40U-10	CCTCCAGTG	CCTCCAGTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	e8170e1d-9a50-4822-84ec-8750c4a174cb	65b44904-6523-4508-b745-d3af723355fc	.	YLPM1	NM_019589	exon4	c.1602_1610del	p.534_537del	.	.	59.0	16.0	63.0	0.0	.	298	.	.	Atlas-INDEL
