Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MIB2	142678	hgsc.bcm.edu	hg19	1	1560565	1560565	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MIB2	NM_001170686	exon6	c.G1066C	p.G356R	AGGCTCGGTATGA	.	36.0	17.0	39.0	0.0	.	62	.	.	Atlas-SNP
COL16A1	1307	hgsc.bcm.edu	hg19	1	32133217	32133217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	COL16A1	NM_001856	exon52	c.G3316A	p.E1106K	CACGCTCCCCCTT	.	83.0	41.0	119.0	0.0	.	137	.	.	Atlas-SNP
ZBTB7B	51043	hgsc.bcm.edu	hg19	1	154987493	154987493	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ZBTB7B	NM_001252406	exon4	c.A459G	p.P153P	CATGCCAGCTGTG	.	125.0	38.0	76.0	0.0	.	69	.	.	Atlas-SNP
GPR37L1	9283	hgsc.bcm.edu	hg19	1	202097337	202097337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	GPR37L1,NS,carcinoma,0,1	GPR37L1	NM_004767	exon2	c.G1099A	p.V367I	ACCGTGGTCTACG	.	104.0	56.0	62.0	0.0	.	33	.	.	Atlas-SNP
SLC41A1	254428	hgsc.bcm.edu	hg19	1	205764544	205764544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	SLC41A1	NM_173854	exon9	c.G1135A	p.G379R	GCATTCCATTCAT	.	247.0	48.0	155.0	0.0	.	46	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	215914870	215914870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	USH2A	NM_206933	exon60	c.G11558T	p.G3853V	CTAACTCCACAAC	.	117.0	35.0	87.0	0.0	.	1168	.	.	Atlas-SNP
GEMIN6	79833	hgsc.bcm.edu	hg19	2	39006178	39006178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	GEMIN6	NM_024775	exon2	c.A46G	p.I16V	GATTACATTTACA	.	145.0	70.0	188.0	0.0	.	13	.	.	Atlas-SNP
SLC35F5	80255	hgsc.bcm.edu	hg19	2	114500441	114500441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	SLC35F5	NM_025181	exon7	c.G578T	p.R193L	CTCACACGAGACT	.	52.0	18.0	86.0	0.0	.	60	.	.	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098804	178098804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	NFE2L2,NS,carcinoma,0,4	NFE2L2	NM_006164	exon2	c.G241C	p.G81R	ATTCACCTGTCTC	.	51.0	28.0	83.0	0.0	.	225	.	.	Atlas-SNP
SLC39A10	57181	hgsc.bcm.edu	hg19	2	196573489	196573489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	SLC39A10	NM_020342	exon5	c.T1496G	p.L499R	AAGGACTTGTTGC	.	114.0	18.0	141.0	0.0	.	89	.	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	203996824	203996824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	NBEAL1	NM_001114132	exon25	c.T3606G	p.I1202M	TCTTATTAAAAAC	.	233.0	108.0	347.0	0.0	.	266	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211465358	211465358	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	CPS1	NM_001122633	exon16	c.T1647C	p.A549A	TATGGCTACGGAA	.	128.0	65.0	211.0	1.0	.	485	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	rs28931588	bycluster	TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	CTNNB1,gallbladder,other,0,2	CTNNB1	NM_001098209	exon3	c.G94A	p.D32N	TACCTGGACTCTG	.	127.0	53.0	173.0	0.0	.	4904	.	.	Atlas-SNP
MCM2	4171	hgsc.bcm.edu	hg19	3	127336848	127336848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MCM2	NM_004526	exon12	c.A1937G	p.N646S	CTGAGAACGTGGA	.	37.0	19.0	55.0	0.0	.	79	.	.	Atlas-SNP
COPG1	22820	hgsc.bcm.edu	hg19	3	128987352	128987352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	.	NM_016128	exon17	c.A1663T	p.I555F	GTGTCCATCCCTG	.	73.0	33.0	87.0	0.0	.	.	.	.	Atlas-SNP
BCHE	590	hgsc.bcm.edu	hg19	3	165548042	165548042	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	BCHE	NM_000055	exon2	c.G780A	p.A260A	TGTTACCGCCCAA	.	184.0	76.0	212.0	0.0	.	136	.	.	Atlas-SNP
FIP1L1	81608	hgsc.bcm.edu	hg19	4	54256024	54256024	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	FIP1L1	NM_030917	exon6	c.A381G	p.R127R	GGGAAGAGTTTAT	.	96.0	40.0	124.0	0.0	.	60	.	.	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85663028	85663028	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	WDFY3	NM_014991	exon38	c.A6120G	p.V2040V	CACCAATACCTGG	.	227.0	96.0	253.0	1.0	.	314	.	.	Atlas-SNP
HHIP	64399	hgsc.bcm.edu	hg19	4	145567951	145567951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	HHIP	NM_022475	exon1	c.G124T	p.G42W	CTGAATGGGAACC	.	170.0	85.0	209.0	0.0	.	100	.	.	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	hg19	5	1221377	1221377	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	SLC6A19	NM_001003841	exon11	c.C1650T	p.F550F	CTTCTTCGTGGTA	.	54.0	16.0	55.0	0.0	.	99	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19473502	19473502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	CDH18	NM_004934	exon13	c.C2206A	p.Q736K	AAGTCTGAAGAGA	.	167.0	51.0	156.0	0.0	.	561	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26881347	26881347	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	CDH9	NM_016279	exon12	c.C2268A	p.L756L	AGCTGTGAGAGAT	.	152.0	61.0	118.0	0.0	.	305	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26881348	26881348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	CDH9	NM_016279	exon12	c.T2267A	p.L756H	GCTGTGAGAGATT	.	153.0	62.0	118.0	0.0	.	305	.	.	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	hg19	6	17628999	17628999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	NUP153	NM_005124	exon18	c.A3431G	p.E1144G	GAATTCTCATCTT	.	126.0	90.0	86.0	0.0	.	116	.	.	Atlas-SNP
MRPL14	64928	hgsc.bcm.edu	hg19	6	44081735	44081735	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MRPL14	NM_032111	exon3	c.C283T	p.R95X	TCATTCGGGGGCC	.	186.0	34.0	107.0	0.0	.	15	.	.	Atlas-SNP
MANEA	79694	hgsc.bcm.edu	hg19	6	96034647	96034647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MANEA	NM_024641	exon2	c.A332G	p.Y111C	GTTGGTATGGAAA	.	66.0	57.0	155.0	0.0	.	58	.	.	Atlas-SNP
GRM1	2911	hgsc.bcm.edu	hg19	6	146480653	146480653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	GRM1	NM_000838	exon3	c.C870A	p.F290L	CTGCTTCTGTGAA	.	39.0	37.0	100.0	0.0	.	419	.	.	Atlas-SNP
ACAT2	39	hgsc.bcm.edu	hg19	6	160188168	160188168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ACAT2	NM_005891	exon3	c.A322G	p.I108V	ATAGGGATAGGAG	.	56.0	50.0	150.0	0.0	.	32	.	.	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	hg19	6	168319445	168319445	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MLLT4	NM_001040000	exon20	c.G2719T	p.E907X	GTGGCTGAAAACA	.	47.0	43.0	118.0	0.0	.	351	.	.	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	hg19	7	11416274	11416274	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	THSD7A	NM_015204	exon26	c.A4812G	p.L1604L	GGTCTTTAGTCTC	.	61.0	40.0	55.0	0.0	.	219	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103214576	103214576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	RELN	NM_173054	exon30	c.G4474A	p.E1492K	GGGCTTCCCTTTT	.	121.0	53.0	180.0	0.0	.	593	.	.	Atlas-SNP
RINT1	60561	hgsc.bcm.edu	hg19	7	105183036	105183036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	RINT1,rectum,carcinoma,-1,1	RINT1	NM_021930	exon4	c.T455A	p.I152N	GCCAGATTGAAGA	.	137.0	66.0	189.0	0.0	.	65	.	.	Atlas-SNP
GCC1	79571	hgsc.bcm.edu	hg19	7	127222825	127222825	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	GCC1	NM_024523	exon2	c.T1571G	p.L524R	TCTGCAAGCTGTT	.	88.0	41.0	101.0	0.0	.	83	.	.	Atlas-SNP
TMEM140	55281	hgsc.bcm.edu	hg19	7	134849312	134849312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	TMEM140	NM_018295	exon2	c.C119G	p.T40S	ACCTCACTGACCT	.	107.0	13.0	119.0	0.0	.	18	.	.	Atlas-SNP
FAM167A	83648	hgsc.bcm.edu	hg19	8	11301674	11301674	+	Missense_Mutation	SNP	G	G	T	rs376899787		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	FAM167A	NM_053279	exon2	c.C247A	p.L83I	GGGGGAGCAAGGG	.	22.0	17.0	84.0	0.0	.	21	.	.	Atlas-SNP
PTK2B	2185	hgsc.bcm.edu	hg19	8	27315938	27315938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	PTK2B	NM_173174	exon36	c.A2942G	p.H981R	CTTCACACACCCT	.	51.0	42.0	130.0	0.0	.	304	.	.	Atlas-SNP
MRPL15	29088	hgsc.bcm.edu	hg19	8	55055240	55055240	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MRPL15	NM_014175	exon4	c.G447A	p.T149T	CTTTACGGCAAAA	.	373.0	31.0	243.0	0.0	.	26	.	.	Atlas-SNP
TMEM8B	51754	hgsc.bcm.edu	hg19	9	35853536	35853536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	TMEM8B	NM_001042590	exon13	c.C1118T	p.P373L	GCTACCCACCCAC	.	46.0	18.0	74.0	0.0	.	53	.	.	Atlas-SNP
TMC1	117531	hgsc.bcm.edu	hg19	9	75407157	75407157	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	TMC1	NM_138691	exon17	c.T1455C	p.N485N	AGCCAATATGATC	.	140.0	57.0	197.0	0.0	.	87	.	.	Atlas-SNP
NMRK1	54981	hgsc.bcm.edu	hg19	9	77681717	77681717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	.	NM_017881	exon8	c.T536C	p.L179S	ACTTGCAAAAAGA	.	127.0	54.0	132.0	0.0	.	.	.	.	Atlas-SNP
FAM171A1	221061	hgsc.bcm.edu	hg19	10	15255031	15255031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	FAM171A1	NM_001010924	exon8	c.G2556T	p.Q852H	TCTTCTCTGGTGG	.	62.0	39.0	51.0	0.0	.	252	.	.	Atlas-SNP
KCNC1	3746	hgsc.bcm.edu	hg19	11	17758086	17758086	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	KCNC1	NM_004976	exon1	c.C537A	p.L179L	GGCGCTCTTCGAG	.	67.0	29.0	71.0	0.0	.	149	.	.	Atlas-SNP
OR5M3	219482	hgsc.bcm.edu	hg19	11	56237301	56237301	+	Nonsense_Mutation	SNP	G	G	A	rs138643585	alternate_allele	TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	OR5M3	NM_001004742	exon1	c.C673T	p.R225X	GCATTCGCAGAAT	.	197.0	86.0	230.0	0.0	.	103	.	G|1.000;C|0.000	Atlas-SNP
MS4A14	84689	hgsc.bcm.edu	hg19	11	60184358	60184358	+	Silent	SNP	G	G	T	rs375353153	alternate_allele	TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MS4A14	NM_001261828	exon6	c.G2016T	p.L672L	AAAACTGTTATGC	.	102.0	50.0	120.0	0.0	.	120	.	.	Atlas-SNP
ME3	10873	hgsc.bcm.edu	hg19	11	86267694	86267694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ME3	NM_006680	exon4	c.G368A	p.R123Q	AGCACTCGGTAGA	.	68.0	23.0	93.0	0.0	.	70	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92533328	92533328	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	FAT3	NM_001008781	exon9	c.C7149T	p.Y2383Y	TATCTACATCTCT	.	78.0	50.0	98.0	0.0	.	1822	.	.	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	hg19	11	108385423	108385423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	EXPH5	NM_015065	exon6	c.A811G	p.I271V	CATAGATAGACAT	.	75.0	33.0	114.0	0.0	.	193	.	.	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119025597	119025597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ABCG4	NM_022169	exon6	c.C658T	p.P220S	AACCCGCCTGTCA	.	78.0	24.0	97.0	0.0	.	77	.	.	Atlas-SNP
WBP11	51729	hgsc.bcm.edu	hg19	12	14948022	14948022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	WBP11	NM_016312	exon6	c.A404T	p.E135V	TCCACTTCCACAT	.	46.0	24.0	49.0	0.0	.	66	.	.	Atlas-SNP
HELB	92797	hgsc.bcm.edu	hg19	12	66731799	66731799	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	HELB	NM_033647	exon13	c.G3181C	p.V1061L	CCACAAGTGTCTT	.	70.0	37.0	117.0	0.0	.	90	.	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67705572	67705572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	CAND1	NM_018448	exon14	c.A3460G	p.T1154A	ACATGTACAACTA	.	127.0	64.0	142.0	0.0	.	100	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116444191	116444191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MED13L	NM_015335	exon12	c.A2264G	p.D755G	GTGACATCCTTGG	.	103.0	48.0	125.0	0.0	.	193	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122247901	122247901	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	SETD1B	NM_015048	exon5	c.G1050A	p.S350S	TTCCTCGGACCTC	.	64.0	36.0	63.0	0.0	.	105	.	.	Atlas-SNP
HCAR2	338442	hgsc.bcm.edu	hg19	12	123186897	123186897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	HCAR2	NM_177551	exon1	c.T934C	p.C312R	GGAGGCAGCGGTT	.	212.0	54.0	261.0	0.0	.	36	.	.	Atlas-SNP
HSPA2	3306	hgsc.bcm.edu	hg19	14	65008434	65008434	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	HSPA2	NM_021979	exon1	c.G867A	p.S289S	CGACTCGCTCTAC	.	40.0	21.0	59.0	0.0	.	83	.	.	Atlas-SNP
LTBP2	4053	hgsc.bcm.edu	hg19	14	74988710	74988710	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	LTBP2	NM_000428	exon17	c.G2692T	p.G898X	CTTTTCCCTTGCA	.	96.0	16.0	103.0	0.0	.	158	.	.	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	hg19	14	86089396	86089396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	FLRT2	NM_013231	exon2	c.C1538A	p.T513N	AGGCCACCACCCA	.	119.0	49.0	139.0	0.0	.	168	.	.	Atlas-SNP
PRSS41	360226	hgsc.bcm.edu	hg19	16	2855034	2855034	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	.	NM_001135086	exon5	c.T858C	p.S286S	CATCAGTGTGTAC	.	98.0	50.0	100.0	0.0	.	.	.	.	Atlas-SNP
ITGAM	3684	hgsc.bcm.edu	hg19	16	31341476	31341476	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ITGAM	NM_001145808	exon26	c.C3054G	p.A1018A	GAAGGCCCCCGTG	.	67.0	27.0	97.0	0.0	.	137	.	.	Atlas-SNP
FAM65A	79567	hgsc.bcm.edu	hg19	16	67579380	67579380	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	FAM65A	NM_001193523	exon18	c.G3193C	p.V1065L	AGTTTTGTGGAAA	.	113.0	54.0	169.0	0.0	.	104	.	.	Atlas-SNP
PLA2G15	23659	hgsc.bcm.edu	hg19	16	68289848	68289848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	PLA2G15	NM_012320	exon5	c.G682A	p.A228T	CTGGGTGCGCCCT	.	85.0	36.0	88.0	0.0	.	30	.	.	Atlas-SNP
ITGAE	3682	hgsc.bcm.edu	hg19	17	3664407	3664407	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ITGAE	NM_002208	exon6	c.T498C	p.G166G	TTCTCCACCGCCT	.	32.0	19.0	38.0	0.0	.	96	.	.	Atlas-SNP
ANKFY1	51479	hgsc.bcm.edu	hg19	17	4080548	4080548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ANKFY1	NM_001257999	exon19	c.A2774G	p.D925G	TCAATATCAGAGT	.	140.0	71.0	190.0	0.0	.	81	.	.	Atlas-SNP
GGNBP2	79893	hgsc.bcm.edu	hg19	17	34945708	34945708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	GGNBP2	NM_024835	exon14	c.A1961G	p.N654S	TGGCTAATAACCA	.	112.0	38.0	140.0	0.0	.	72	.	.	Atlas-SNP
KRT20	54474	hgsc.bcm.edu	hg19	17	39036074	39036074	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	KRT20	NM_019010	exon5	c.T909C	p.H303H	GCTGAGATGGGAC	.	59.0	26.0	78.0	0.0	.	38	.	.	Atlas-SNP
KRT38	8687	hgsc.bcm.edu	hg19	17	39593759	39593759	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	KRT38	NM_006771	exon7	c.T1276A	p.C426S	TCACGCAGGAGGG	.	192.0	83.0	248.0	0.0	.	63	.	.	Atlas-SNP
PTRF	284119	hgsc.bcm.edu	hg19	17	40575009	40575009	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	PTRF	NM_012232	exon1	c.C107A	p.S36X	GCCCCCGACGGCT	.	110.0	47.0	126.0	0.0	.	48	.	.	Atlas-SNP
PCYT2	5833	hgsc.bcm.edu	hg19	17	79862774	79862774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	PCYT2	NM_001184917	exon14	c.G1159T	p.A387S	GGAAGGCCAGCTC	.	58.0	24.0	71.0	0.0	.	23	.	.	Atlas-SNP
PCYT2	5833	hgsc.bcm.edu	hg19	17	79862775	79862775	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	PCYT2	NM_001184917	exon14	c.G1158C	p.L386L	GAAGGCCAGCTCC	.	59.0	24.0	73.0	0.0	.	23	.	.	Atlas-SNP
ZNF750	79755	hgsc.bcm.edu	hg19	17	80789233	80789233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ZNF750	NM_024702	exon2	c.C1098A	p.N366K	CGAAGGGTTTAAC	.	60.0	29.0	74.0	0.0	.	60	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9056223	9056223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MUC16	NM_024690	exon3	c.G31223A	p.G10408E	ACTGTTCCCAGCT	.	71.0	27.0	106.0	0.0	.	4315	.	.	Atlas-SNP
COLGALT1	79709	hgsc.bcm.edu	hg19	19	17691643	17691643	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	.	NM_024656	exon11	c.G1530T	p.L510L	ACTGCTGGCTGCT	.	60.0	30.0	69.0	0.0	.	.	.	.	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	hg19	19	22496791	22496791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ZNF729	NM_001242680	exon4	c.T572A	p.M191K	TTTTCATGCTTTC	.	20.0	12.0	18.0	0.0	.	78	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42880311	42880311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MEGF8	NM_001271938	exon42	c.A7922G	p.Q2641R	TCCGGCAGGACCA	.	53.0	19.0	57.0	0.0	.	358	.	.	Atlas-SNP
ZNF296	162979	hgsc.bcm.edu	hg19	19	45575426	45575426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ZNF296	NM_145288	exon3	c.G861T	p.Q287H	GGGGCTCTGGGGC	.	87.0	42.0	106.0	0.0	.	22	.	.	Atlas-SNP
KLK13	26085	hgsc.bcm.edu	hg19	19	51563812	51563812	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	KLK13	NM_015596	exon2	c.C117T	p.G39G	GGTGTAGCCACCT	.	131.0	8.0	147.0	0.0	.	40	.	.	Atlas-SNP
ZNF471	57573	hgsc.bcm.edu	hg19	19	57027696	57027696	+	Missense_Mutation	SNP	A	A	C	rs150191675	alternate_allele	TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ZNF471	NM_020813	exon3	c.A86C	p.Q29P	AATGGCAATGGAT	.	128.0	64.0	190.0	0.0	.	99	.	A|1.000;T|0.000	Atlas-SNP
ZNF606	80095	hgsc.bcm.edu	hg19	19	58489957	58489957	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ZNF606	NM_025027	exon7	c.A2091G	p.A697A	CCGGTGTGCAATG	.	112.0	52.0	161.0	0.0	.	155	.	.	Atlas-SNP
REM1	28954	hgsc.bcm.edu	hg19	20	30064277	30064277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	REM1	NM_014012	exon2	c.A29G	p.K10R	AAGCAAAGACCCC	.	149.0	63.0	164.0	0.0	.	54	.	.	Atlas-SNP
SLC12A5	57468	hgsc.bcm.edu	hg19	20	44678266	44678266	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	SLC12A5	NM_001134771	exon17	c.A2087T	p.Q696L	GGCCACAGCTGCT	.	44.0	19.0	77.0	0.0	.	181	.	.	Atlas-SNP
PMEPA1	56937	hgsc.bcm.edu	hg19	20	56284608	56284608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	PMEPA1	NM_020182	exon1	c.G31A	p.A11T	CGGCGGCGGTGCT	.	80.0	4.0	90.0	0.0	.	29	.	.	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	hg19	20	61948009	61948009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	COL20A1	NM_020882	exon21	c.C2629T	p.L877F	TTCACGCTCTTCA	.	43.0	5.0	52.0	0.0	.	137	.	.	Atlas-SNP
XBP1	7494	hgsc.bcm.edu	hg19	22	29196386	29196386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	XBP1	NM_001079539	exon1	c.C127T	p.Q43X	CTCTCTGGGCTGG	.	74.0	52.0	78.0	0.0	.	37	.	.	Atlas-SNP
MAP3K15	389840	hgsc.bcm.edu	hg19	X	19416359	19416359	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	MAP3K15	NM_001001671	exon15	c.C2051G	p.P684R	CTCTCCGGGATTT	.	38.0	35.0	49.0	0.0	.	108	.	.	Atlas-SNP
ARMCX3	51566	hgsc.bcm.edu	hg19	X	100880445	100880445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ARMCX3	NM_016607	exon5	c.T476A	p.I159N	ATATTATTCGTGA	.	188.0	89.0	115.0	0.0	.	33	.	.	Atlas-SNP
GPR101	83550	hgsc.bcm.edu	hg19	X	136113550	136113550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	GPR101	NM_054021	exon1	c.T284C	p.L95P	CAGAAGAGAGGCA	.	126.0	122.0	67.0	0.0	.	96	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215880217	215880217	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	ABCA12	NM_173076	exon15	c.1954delA	p.K652fs	.	.	110.0	52.0	161.0	0.0	.	368	.	.	Atlas-INDEL
DLEC1	9940	hgsc.bcm.edu	hg19	3	38127869	38127870	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	DLEC1	NM_007335	exon9	c.1572_1572del	p.524_524del	.	.	88.0	40.0	138.0	0.0	.	278	.	.	Atlas-INDEL
RPLP0	6175	hgsc.bcm.edu	hg19	12	120634712	120634715	+	Frame_Shift_Del	DEL	GATG	GATG	-	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	GATG	GATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	RPLP0	NM_053275	exon8	c.816_819del	p.272_273del	.	.	236.0	81.0	367.0	0.0	.	27	.	.	Atlas-INDEL
PLP1	5354	hgsc.bcm.edu	hg19	X	103041449	103041449	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AAVY-01A-11D-A40R-10	TCGA-DD-AAVY-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5a40648e-66fb-456f-bb65-eb211084f42c	6cc223ac-a900-47e6-95c6-bef64dca1158	.	PLP1	NM_199478	exon3	c.246delT	p.Y82X	.	.	239.0	110.0	198.0	0.0	.	37	.	.	Atlas-INDEL
