Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FBXO44	93611	hgsc.bcm.edu	hg19	1	11721248	11721248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	FBXO44	NM_033182	exon6	c.G686A	p.G229D	ACGGCGGCGTGGA	.	63.0	14.0	54.0	0.0	.	20	.	.	Atlas-SNP
HEYL	26508	hgsc.bcm.edu	hg19	1	40092692	40092692	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	HEYL,colon,carcinoma,0,1	HEYL	NM_014571	exon5	c.C474T	p.A158A	CATCTCGGCTGCG	.	171.0	11.0	157.0	0.0	.	27	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70502269	70502269	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	LRRC7	NM_020794	exon18	c.A2136T	p.T712T	GACAACAGCTAAA	.	174.0	35.0	117.0	0.0	.	400	.	.	Atlas-SNP
PSMA5	5686	hgsc.bcm.edu	hg19	1	109944673	109944673	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	PSMA5	NM_002790	exon9	c.A688T	p.T230S	CCTTTGTGAACAT	.	51.0	12.0	49.0	0.0	.	14	.	.	Atlas-SNP
SHCBP1L	81626	hgsc.bcm.edu	hg19	1	182920459	182920459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SHCBP1L	NM_030933	exon2	c.G549T	p.L183F	CTCAACCAATATA	.	407.0	47.0	221.0	0.0	.	64	.	.	Atlas-SNP
MARK1	4139	hgsc.bcm.edu	hg19	1	220826619	220826619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	MARK1	NM_018650	exon16	c.C1913T	p.T638M	ATGAAACGGGTGC	.	291.0	12.0	141.0	0.0	.	161	.	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	hg19	2	1842975	1842975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	MYT1L,NS,carcinoma,0,1	MYT1L	NM_015025	exon21	c.C3020A	p.T1007K	CCTGGCGTGGGGC	.	167.0	35.0	135.0	0.0	.	241	.	.	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	hg19	2	25966307	25966307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	ASXL2	NM_018263	exon12	c.A2899G	p.I967V	GCAGAATTTGCTC	.	69.0	26.0	59.0	0.0	.	217	.	.	Atlas-SNP
GALNT14	79623	hgsc.bcm.edu	hg19	2	31154985	31154985	+	Missense_Mutation	SNP	C	C	T	rs368328840		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	GALNT14	NM_001253826	exon11	c.G1022A	p.R341Q	TTCTTCCGGAAGA	.	90.0	22.0	69.0	0.0	.	103	.	.	Atlas-SNP
AFTPH	54812	hgsc.bcm.edu	hg19	2	64779969	64779969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	AFTPH	NM_017657	exon2	c.A1361G	p.D454G	CTCAAGATTCAAT	.	151.0	39.0	112.0	0.0	.	117	.	.	Atlas-SNP
CD207	50489	hgsc.bcm.edu	hg19	2	71060827	71060827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	CD207	NM_015717	exon3	c.G515A	p.R172Q	AGTGCCCGGATCT	.	106.0	19.0	89.0	0.0	.	47	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	79971559	79971559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	CTNNA2	NM_001164883	exon3	c.A149C	p.K50T	GTAAAAAGAAAGG	.	253.0	67.0	223.0	0.0	.	462	.	.	Atlas-SNP
FAM178B	51252	hgsc.bcm.edu	hg19	2	97637835	97637835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	FAM178B	NM_001122646	exon3	c.C367A	p.L123M	CCTGCAGCACCCT	.	373.0	88.0	303.0	0.0	.	35	.	.	Atlas-SNP
PRRT3	285368	hgsc.bcm.edu	hg19	3	9988877	9988877	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	PRRT3	NM_207351	exon4	c.G1980A	p.W660X	GTACAGCCAGAGC	.	35.0	8.0	32.0	0.0	.	35	.	.	Atlas-SNP
VILL	50853	hgsc.bcm.edu	hg19	3	38043300	38043300	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	VILL	NM_015873	exon12	c.C1428T	p.S476S	GGGCAGCGAGCCC	.	104.0	30.0	94.0	0.0	.	61	.	.	Atlas-SNP
ERC2	26059	hgsc.bcm.edu	hg19	3	56026116	56026116	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	ERC2	NM_015576	exon11	c.G2224C	p.D742H	CCTTGTCATTCTT	.	139.0	34.0	111.0	0.0	.	221	.	.	Atlas-SNP
SHQ1	55164	hgsc.bcm.edu	hg19	3	72799710	72799710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SHQ1	NM_018130	exon11	c.A1459G	p.T487A	TGACTGTCTCAGA	.	97.0	19.0	93.0	0.0	.	60	.	.	Atlas-SNP
PPP4R2	151987	hgsc.bcm.edu	hg19	3	73046215	73046215	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	PPP4R2	NM_174907	exon1	c.G27T	p.A9A	GGAGGCGCTGAAA	.	275.0	72.0	232.0	0.0	.	30	.	.	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	hg19	3	97868486	97868486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	OR5H14	NM_001005514	exon1	c.T257C	p.L86S	ACTTCTTAGCTAA	.	265.0	66.0	201.0	0.0	.	56	.	.	Atlas-SNP
GTF2E1	2960	hgsc.bcm.edu	hg19	3	120500204	120500204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	GTF2E1	NM_005513	exon5	c.T1207C	p.F403L	CGTCCGTTCTCCT	.	213.0	38.0	194.0	0.0	.	52	.	.	Atlas-SNP
CNOT6L	246175	hgsc.bcm.edu	hg19	4	78694248	78694248	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	CNOT6L	NM_144571	exon4	c.T387C	p.T129T	ACCTAGAGTTTGT	.	549.0	165.0	558.0	0.0	.	57	.	.	Atlas-SNP
BANK1	55024	hgsc.bcm.edu	hg19	4	102839251	102839251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	BANK1	NM_017935	exon7	c.G1111C	p.A371P	ACCTGGGCATCTA	.	317.0	100.0	318.0	0.0	.	95	.	.	Atlas-SNP
TRPC3	7222	hgsc.bcm.edu	hg19	4	122828649	122828649	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	TRPC3	NM_001130698	exon7	c.C1866G	p.S622R	AGAGAAGCTGAGC	.	301.0	81.0	361.0	0.0	.	201	.	.	Atlas-SNP
CLGN	1047	hgsc.bcm.edu	hg19	4	141323176	141323176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	CLGN	NM_001130675	exon7	c.A464G	p.Y155C	TTAATGTATGCAC	.	453.0	144.0	529.0	0.0	.	76	.	.	Atlas-SNP
C4orf47	441054	hgsc.bcm.edu	hg19	4	186357237	186357237	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	C4orf47	NM_001114357	exon3	c.C358G	p.P120A	GGTGGTCCAGTCC	.	549.0	157.0	595.0	1.0	.	13	.	.	Atlas-SNP
EMB	133418	hgsc.bcm.edu	hg19	5	49701580	49701580	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	EMB	NM_198449	exon5	c.C579T	p.Y193Y	ACTACTGTACCAG	.	767.0	43.0	653.0	0.0	.	42	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54701259	54701259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SKIV2L2	NM_015360	exon22	c.A2488G	p.I830V	ATTGCAATAGATA	.	154.0	42.0	114.0	0.0	.	104	.	.	Atlas-SNP
SLC38A9	153129	hgsc.bcm.edu	hg19	5	54965110	54965110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SLC38A9	NM_173514	exon7	c.G472A	p.G158S	AAAGGCCCATCAG	.	101.0	22.0	97.0	0.0	.	50	.	.	Atlas-SNP
MCCC2	64087	hgsc.bcm.edu	hg19	5	70952644	70952644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	MCCC2	NM_022132	exon17	c.A1649G	p.N550S	CCCTCAACGCACC	.	175.0	34.0	110.0	0.0	.	47	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127670429	127670429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	FBN2	NM_001999	exon31	c.G4081A	p.G1361R	TGGTCCCCTTCTT	.	94.0	18.0	70.0	0.0	.	858	.	.	Atlas-SNP
AFAP1L1	134265	hgsc.bcm.edu	hg19	5	148695457	148695457	+	Missense_Mutation	SNP	G	G	A	rs371511486		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	AFAP1L1,colon,carcinoma,0,1	AFAP1L1	NM_001146337	exon10	c.G1094A	p.R365H	TTGGCCGCCGGGA	.	160.0	25.0	114.0	0.0	.	86	.	.	Atlas-SNP
HMMR	3161	hgsc.bcm.edu	hg19	5	162901124	162901124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	HMMR	NM_001142556	exon10	c.A966T	p.L322F	AAACTTAAAACAG	.	934.0	165.0	568.0	0.0	.	64	.	.	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168176483	168176483	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SLIT3	NM_001271946	exon19	c.T2131A	p.C711S	CATCACAGGTGAA	.	121.0	27.0	93.0	0.0	.	224	.	.	Atlas-SNP
SYCP2L	221711	hgsc.bcm.edu	hg19	6	10911072	10911072	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SYCP2L	NM_001040274	exon12	c.G888T	p.P296P	ATTTCCGTGTATT	.	78.0	29.0	60.0	0.0	.	101	.	.	Atlas-SNP
ATF6B	1388	hgsc.bcm.edu	hg19	6	32093947	32093947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	ATF6B	NM_004381	exon5	c.C425A	p.S142Y	AATGAGGATGTTG	.	100.0	19.0	77.0	0.0	.	40	.	.	Atlas-SNP
RUNX2	860	hgsc.bcm.edu	hg19	6	45514837	45514837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	RUNX2	NM_001024630	exon9	c.A1361G	p.Y454C	GATCCTATCAGTT	.	174.0	47.0	114.0	0.0	.	128	.	.	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76538320	76538320	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	MYO6	NM_004999	exon4	c.A251T	p.D84V	GTAAAGACAGAAT	.	269.0	64.0	211.0	0.0	.	124	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106967341	106967341	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	AIM1	NM_001624	exon2	c.T1034G	p.V345G	CCAAAGTTACCGT	.	261.0	62.0	147.0	0.0	.	161	.	.	Atlas-SNP
SMPD2	6610	hgsc.bcm.edu	hg19	6	109764501	109764501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SMPD2	NM_003080	exon9	c.G761A	p.S254N	GTAAGAGTTTTGA	.	107.0	23.0	102.0	0.0	.	25	.	.	Atlas-SNP
RGS17	26575	hgsc.bcm.edu	hg19	6	153332802	153332802	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	RGS17	NM_012419	exon5	c.T540G	p.T180T	CATTAAAGTATAT	.	209.0	17.0	233.0	0.0	.	32	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4245519	4245519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SDK1	NM_152744	exon36	c.A5107G	p.M1703V	CCGGCCATGGCCC	.	119.0	29.0	93.0	0.0	.	361	.	.	Atlas-SNP
MEOX2	4223	hgsc.bcm.edu	hg19	7	15725803	15725803	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	MEOX2,caecum,carcinoma,0,1	MEOX2	NM_005924	exon1	c.C225T	p.H75H	ATGGTGGTGGTGG	.	58.0	5.0	56.0	1.0	.	68	.	.	Atlas-SNP
HECW1	23072	hgsc.bcm.edu	hg19	7	43447201	43447201	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	HECW1	NM_015052	exon8	c.C672T	p.N224N	TTTCAACCCAGAC	.	279.0	22.0	242.0	0.0	.	540	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81603858	81603858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	CACNA2D1	NM_000722	exon25	c.A1966C	p.N656H	GGTCATTGCAGTA	.	99.0	21.0	94.0	0.0	.	191	.	.	Atlas-SNP
KIAA1324L	222223	hgsc.bcm.edu	hg19	7	86567441	86567441	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	KIAA1324L	NM_001142749	exon9	c.1089+1G>C	.	CTGGTACCTTTCC	.	65.0	13.0	68.0	0.0	.	225	.	.	Atlas-SNP
OPLAH	26873	hgsc.bcm.edu	hg19	8	145113729	145113729	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	OPLAH	NM_017570	exon5	c.G534A	p.G178G	TAGCAGCCCCTCC	.	117.0	50.0	91.0	0.0	.	78	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	328171	328171	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	DOCK8	NM_203447	exon9	c.G1044C	p.K348N	AGTCAAGGTAATT	.	60.0	12.0	76.0	0.0	.	401	.	.	Atlas-SNP
MEGF9	1955	hgsc.bcm.edu	hg19	9	123476253	123476253	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	MEGF9	NM_001080497	exon1	c.G384A	p.P128P	CGCCGCCGGAGGG	.	110.0	29.0	120.0	0.0	.	33	.	.	Atlas-SNP
C9orf142	286257	hgsc.bcm.edu	hg19	9	139886992	139886992	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	C9orf142	NM_183241	exon1	c.G97C	p.D33H	GAGGGGGACCGCG	.	43.0	5.0	39.0	0.0	.	8	.	.	Atlas-SNP
WAC	51322	hgsc.bcm.edu	hg19	10	28897314	28897314	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	WAC	NM_016628	exon8	c.G1119A	p.T373T	AGCCACGCTGCAG	.	126.0	31.0	122.0	0.0	.	77	.	.	Atlas-SNP
NFKB2	4791	hgsc.bcm.edu	hg19	10	104156557	104156557	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	NFKB2	NM_001077494	exon5	c.C220G	p.R74G	AAGGGCCGAAAGA	.	119.0	27.0	65.0	0.0	.	48	.	.	Atlas-SNP
ACSL5	51703	hgsc.bcm.edu	hg19	10	114169431	114169431	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	ACSL5	NM_016234	exon7	c.A867T	p.L289L	ATCCCTATATGAT	.	124.0	25.0	87.0	0.0	.	51	.	.	Atlas-SNP
FANCF	2188	hgsc.bcm.edu	hg19	11	22646577	22646577	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	FANCF	NM_022725	exon1	c.G780A	p.L260L	TAAAGTCAAAAGC	.	132.0	18.0	113.0	0.0	.	24	.	.	Atlas-SNP
KDM2A	22992	hgsc.bcm.edu	hg19	11	67015791	67015791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	KDM2A	NM_012308	exon16	c.T2005A	p.C669S	CCAAATTGCTGGG	.	206.0	36.0	176.0	0.0	.	80	.	.	Atlas-SNP
CDON	50937	hgsc.bcm.edu	hg19	11	125830853	125830853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	CDON	NM_001243597	exon20	c.A3848T	p.Q1283L	CGGGGCTGCTGAA	.	194.0	45.0	144.0	0.0	.	137	.	.	Atlas-SNP
EMP1	2012	hgsc.bcm.edu	hg19	12	13366426	13366426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	EMP1	NM_001423	exon3	c.C92A	p.S31Y	TGGTTTCCAATAC	.	215.0	39.0	163.0	0.0	.	14	.	.	Atlas-SNP
PFDN5	5204	hgsc.bcm.edu	hg19	12	53689386	53689386	+	Missense_Mutation	SNP	T	T	A	rs199718276	alternate_allele	TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	PFDN5,NS,carcinoma,0,2	PFDN5	NM_002624	exon1	c.T35A	p.L12Q	TGAATCTGCCGCA	.	150.0	42.0	76.0	0.0	.	16	.	.	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	hg19	12	56495091	56495091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	ERBB3	NM_001982	exon27	c.G3448C	p.G1150R	CCACCCGGGTTAG	.	140.0	32.0	108.0	0.0	.	350	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57591115	57591115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	LRP1	NM_002332	exon57	c.A9110G	p.Y3037C	ACCGGTACTACCT	.	136.0	38.0	115.0	0.0	.	428	.	.	Atlas-SNP
SLC5A8	160728	hgsc.bcm.edu	hg19	12	101573838	101573838	+	Missense_Mutation	SNP	G	G	A	rs200408412		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SLC5A8	NM_145913	exon10	c.C1202T	p.A401V	GCCAGCGCAGCCA	.	197.0	36.0	120.0	0.0	.	102	.	G|0.999;A|0.001	Atlas-SNP
UBC	7316	hgsc.bcm.edu	hg19	12	125397889	125397889	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	UBC	NM_021009	exon2	c.G429T	p.L143L	CAGGTGCAGGGTA	.	145.0	32.0	118.0	0.0	.	79	.	.	Atlas-SNP
EPSTI1	94240	hgsc.bcm.edu	hg19	13	43566216	43566216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	EPSTI1	NM_001002264	exon1	c.G86A	p.G29E	TGCCGCCCAGAAG	.	324.0	86.0	207.0	0.0	.	47	.	.	Atlas-SNP
RNF219	79596	hgsc.bcm.edu	hg19	13	79190261	79190261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	RNF219	NM_024546	exon6	c.G1635A	p.M545I	CTCTGACATCATT	.	112.0	33.0	93.0	0.0	.	94	.	.	Atlas-SNP
KLHL28	54813	hgsc.bcm.edu	hg19	14	45403543	45403543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	KLHL28	NM_017658	exon3	c.A1118G	p.N373S	CTTTCATTCATTC	.	169.0	45.0	169.0	0.0	.	53	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28516001	28516001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	HERC2	NM_004667	exon10	c.C1097T	p.P366L	CTCAGAGGGCCAG	.	178.0	39.0	141.0	0.0	.	501	.	.	Atlas-SNP
DENND4A	10260	hgsc.bcm.edu	hg19	15	65957785	65957785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	DENND4A	NM_001144823	exon30	c.A5254G	p.M1752V	CAGACATACAGTG	.	101.0	28.0	104.0	0.0	.	217	.	.	Atlas-SNP
PSTPIP1	9051	hgsc.bcm.edu	hg19	15	77320928	77320928	+	Missense_Mutation	SNP	G	G	T	rs1141043		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	PSTPIP1	NM_003978	exon7	c.G451T	p.A151S	CGGGACGCGGACG	.	366.0	93.0	274.0	0.0	.	50	.	G|1.000;|0.000	Atlas-SNP
TSR3	115939	hgsc.bcm.edu	hg19	16	1399610	1399610	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	.	NM_001001410	exon7	c.768-1G>A	.	GGCAGCCTGGGAG	.	142.0	20.0	101.0	0.0	.	.	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2815588	2815588	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SRRM2	NM_016333	exon11	c.C5059T	p.R1687X	CCACCTCGACGTC	.	87.0	37.0	81.0	0.0	.	263	.	.	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	hg19	17	8424298	8424298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	MYH10	NM_001256012	exon19	c.A2171T	p.H724L	ACTAGGTGTGGAT	.	223.0	44.0	180.0	0.0	.	148	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27442372	27442372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	MYO18A	NM_078471	exon13	c.A2315G	p.N772S	CACCTATTCACCA	.	157.0	31.0	103.0	0.0	.	217	.	.	Atlas-SNP
ANKRD13B	124930	hgsc.bcm.edu	hg19	17	27939496	27939496	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	ANKRD13B	NM_152345	exon12	c.G1335A	p.S445S	GCCATCGGTGCGA	.	237.0	61.0	221.0	0.0	.	39	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975319	38975319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	KRT10	NM_000421	exon7	c.G1468A	p.G490S	CGTGGCCGCCGCC	.	65.0	5.0	29.0	0.0	.	56	.	.	Atlas-SNP
KRT12	3859	hgsc.bcm.edu	hg19	17	39018821	39018821	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	KRT12	NM_000223	exon7	c.T1383C	p.S461S	ACCTTTAGAGGAA	.	120.0	25.0	101.0	0.0	.	53	.	.	Atlas-SNP
TUBD1	51174	hgsc.bcm.edu	hg19	17	57963509	57963509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	TUBD1	NM_016261	exon3	c.A255C	p.Q85H	TTTCCATTGGCCA	.	175.0	58.0	122.0	0.0	.	38	.	.	Atlas-SNP
INTS2	57508	hgsc.bcm.edu	hg19	17	59968916	59968916	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	INTS2	NM_020748	exon14	c.C1857A	p.V619V	TTCTGTGACTGGC	.	190.0	14.0	156.0	0.0	.	89	.	.	Atlas-SNP
DDX5	1655	hgsc.bcm.edu	hg19	17	62496761	62496761	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	DDX5	NM_004396	exon12	c.C1347T	p.N449N	CTTTATGTTATTA	.	167.0	47.0	132.0	0.0	.	101	.	.	Atlas-SNP
MIB1	57534	hgsc.bcm.edu	hg19	18	19399526	19399526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	MIB1	NM_020774	exon12	c.T1748G	p.L583W	TTCTTTTGGAAGC	.	126.0	36.0	101.0	0.0	.	87	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50450079	50450079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	DCC,NS,carcinoma,0,1	DCC	NM_005215	exon4	c.C700T	p.P234S	ATAGATCCAGGAC	.	154.0	32.0	120.0	2.0	.	360	.	.	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	hg19	18	76753827	76753827	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	SALL3	NM_171999	exon2	c.C1836A	p.P612P	CGCTCCCGTGGGC	.	60.0	13.0	48.0	0.0	.	162	.	.	Atlas-SNP
CYP2B6	1555	hgsc.bcm.edu	hg19	19	41518307	41518307	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	CYP2B6	NM_000767	exon7	c.C1069T	p.Q357X	GAGATTCAGAGAT	.	90.0	20.0	65.0	0.0	.	79	.	.	Atlas-SNP
ZNF211	10520	hgsc.bcm.edu	hg19	19	58152529	58152529	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	ZNF211	NM_001265597	exon5	c.A870G	p.G290G	CAGTGGAAAAAGT	.	136.0	32.0	106.0	0.0	.	78	.	.	Atlas-SNP
DLGAP4	22839	hgsc.bcm.edu	hg19	20	35128903	35128903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	DLGAP4	NM_014902	exon9	c.C2392T	p.R798C	GCCTGCCGCCGAG	.	192.0	33.0	136.0	0.0	.	111	.	.	Atlas-SNP
KRTAP24-1	643803	hgsc.bcm.edu	hg19	21	31654604	31654604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	KRTAP24-1	NM_001085455	exon1	c.C647T	p.T216M	CAGCTCGTAGGCC	.	141.0	18.0	93.0	0.0	.	44	.	.	Atlas-SNP
RIMBP3	85376	hgsc.bcm.edu	hg19	22	20457887	20457887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	RIMBP3	NM_015672	exon1	c.G3415T	p.A1139S	CATCGGCGACCTC	.	1070.0	97.0	802.0	0.0	.	42	.	.	Atlas-SNP
SUSD2	56241	hgsc.bcm.edu	hg19	22	24581177	24581177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	SUSD2,NS,carcinoma,0,1	SUSD2	NM_019601	exon6	c.G898A	p.E300K	GAGCTGGAGGATC	.	93.0	18.0	60.0	1.0	.	68	.	.	Atlas-SNP
STS	412	hgsc.bcm.edu	hg19	X	7252038	7252038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	STS	NM_000351	exon9	c.G1268A	p.G423E	TTGATGGACGTGA	.	75.0	24.0	58.0	0.0	.	64	.	.	Atlas-SNP
CAPN6	827	hgsc.bcm.edu	hg19	X	110495540	110495540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	CAPN6	NM_014289	exon5	c.A694G	p.I232V	CCTCAATGGAACA	.	51.0	22.0	51.0	0.0	.	120	.	.	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	7997	7997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	.	ENST00000361739	exon1	c.G412A	p.V138I	CTTGACGTTGACA	.	64.0	9.0	18.0	0.0	.	.	.	.	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	14846	14846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	.	ENST00000361789	exon1	c.G100A	p.G34S	AACTTCGGCTCAC	.	243.0	163.0	70.0	0.0	.	.	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74285302	74285311	+	Frame_Shift_Del	DEL	TTTTGTAGAG	TTTTGTAGAG	-	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	TTTTGTAGAG	TTTTGTAGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	ALB	NM_000477	exon13	c.1730_1739del	p.577_580del	.	.	99.0	15.0	106.0	0.0	.	132	.	.	Atlas-INDEL
FETUB	26998	hgsc.bcm.edu	hg19	3	186360348	186360349	+	Splice_Site	INS	-	-	T	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	FETUB	NM_014375	exon3	c.424+1->T	.	.	.	227.0	52.0	125.0	0.0	.	53	.	.	Atlas-INDEL
TNPO1	3842	hgsc.bcm.edu	hg19	5	72189057	72189058	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	TNPO1	NM_002270	exon16	c.1879_1880del	p.627_627del	.	.	122.0	29.0	87.0	0.0	.	90	.	.	Atlas-INDEL
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105414494	105414495	+	In_Frame_Ins	INS	-	-	TTT	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	AHNAK2	NM_138420	exon7	c.7294_7295insAAA	p.G2432delinsKG	.	.	197.0	42.0	140.0	0.0	.	719	.	.	Atlas-INDEL
KIAA1199	57214	hgsc.bcm.edu	hg19	15	81224345	81224347	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	KIAA1199	NM_018689	exon21	c.2757_2759del	p.919_920del	.	.	60.0	18.0	43.0	0.0	.	118	.	.	Atlas-INDEL
SLC25A52	147407	hgsc.bcm.edu	hg19	18	29339948	29339948	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	.	NM_001034172	exon1	c.708delA	p.G236fs	.	.	483.0	122.0	346.0	0.0	.	.	.	.	Atlas-INDEL
DCHS2	54798	hgsc.bcm.edu	hg19	4	155410671	155410702	+	Frame_Shift_Del	DEL	CGCTTTCGGAATCAATGGCAAAAGATGGTCCA	CGCTTTCGGAATCAATGGCAAAAGATGGTCCA	-	novel		TCGA-DD-AAW0-01A-11D-A40R-10	TCGA-DD-AAW0-10A-01D-A40U-10	CGCTTTCGGAATCAATGGCAAAAGATGGTCCA	CGCTTTCGGAATCAATGGCAAAAGATGGTCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4fe50376-65f7-435c-aa48-38e821e121b3	16c90d4a-6a13-4147-9135-3e66190c927f	.	DCHS2	NM_001142552	exon1	c.1807_1838del	p.603_613del	.	.	108.0	15.0	102.0	0.0	.	594	.	.	Atlas-INDEL
