Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ASAP3	55616	hgsc.bcm.edu	hg19	1	23763700	23763700	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	ASAP3	NM_017707	exon14	c.A1265T	p.H422L	AGGTCGTGCGGCT	.	197.0	72.0	123.0	0.0	.	65	.	.	Atlas-SNP
MKNK1	8569	hgsc.bcm.edu	hg19	1	47048993	47048993	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MKNK1	NM_003684	exon3	c.A43C	p.S15R	CGCTACTGCCCAT	.	49.0	18.0	50.0	0.0	.	36	.	.	Atlas-SNP
MOB3C	148932	hgsc.bcm.edu	hg19	1	47075833	47075833	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MOB3C	NM_145279	exon3	c.C618A	p.I206I	GGTCAGGATCTTG	.	91.0	40.0	67.0	0.0	.	1	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152080354	152080354	+	Missense_Mutation	SNP	C	C	A	rs199599922		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	TCHH,NS,carcinoma,0,1	TCHH	NM_007113	exon3	c.G5339T	p.R1780L	TCCTGGCGGAGCT	.	123.0	77.0	58.0	1.0	.	275	.	C|0.999;A|0.001	Atlas-SNP
INTS3	65123	hgsc.bcm.edu	hg19	1	153740305	153740305	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	INTS3	NM_023015	exon21	c.2244+2T>A	.	CAGAGGTCAGTGC	.	66.0	20.0	21.0	0.0	.	83	.	.	Atlas-SNP
DCST1	149095	hgsc.bcm.edu	hg19	1	155015937	155015937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DCST1	NM_152494	exon10	c.G1124A	p.G375E	CCCTGGGGCTGCT	.	171.0	56.0	68.0	0.0	.	69	.	.	Atlas-SNP
LAMC2	3918	hgsc.bcm.edu	hg19	1	183190045	183190045	+	Missense_Mutation	SNP	C	C	A	rs184817147	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	LAMC2,caecum,carcinoma,0,1	LAMC2	NM_005562	exon5	c.C589A	p.R197S	AGCTGCCGCAGCT	.	323.0	87.0	160.0	1.0	.	113	.	C|0.998;T|0.002	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216019200	216019200	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	USH2A,NS,carcinoma,0,1	USH2A	NM_206933	exon45	c.C9021T	p.N3007N	TGCACTGTTGATG	.	254.0	76.0	151.0	0.0	.	1168	.	.	Atlas-SNP
TBCE	6905	hgsc.bcm.edu	hg19	1	235605132	235605132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	TBCE	NM_003193	exon14	c.A1274G	p.Y425C	CAGAATATGGTGC	.	128.0	39.0	100.0	0.0	.	40	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245851773	245851773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	KIF26B	NM_018012	exon12	c.G5488A	p.E1830K	GAGGCGGAGGCGC	.	32.0	10.0	6.0	0.0	.	343	.	.	Atlas-SNP
DDX1	1653	hgsc.bcm.edu	hg19	2	15737583	15737583	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DDX1	NM_004939	exon5	c.A247C	p.T83P	ATTAAAACTGGTG	.	213.0	80.0	182.0	0.0	.	70	.	.	Atlas-SNP
CRIM1	51232	hgsc.bcm.edu	hg19	2	36749317	36749317	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	CRIM1	NM_016441	exon13	c.A2289T	p.A763A	CCTGGCAGCTGAG	.	209.0	84.0	178.0	0.0	.	88	.	.	Atlas-SNP
SOS1	6654	hgsc.bcm.edu	hg19	2	39239378	39239378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	SOS1	NM_005633	exon14	c.C2279T	p.T760I	TCAACTGTGGGAG	.	105.0	8.0	105.0	0.0	.	134	.	.	Atlas-SNP
FAM178B	51252	hgsc.bcm.edu	hg19	2	97637903	97637903	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FAM178B	NM_001122646	exon3	c.A299T	p.Q100L	GGTGCCTGTATCT	.	368.0	153.0	252.0	0.0	.	35	.	.	Atlas-SNP
ANAPC1	64682	hgsc.bcm.edu	hg19	2	112601156	112601156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	ANAPC1	NM_022662	exon17	c.A1873G	p.I625V	ACTTAATTGCTTG	.	140.0	54.0	103.0	0.0	.	116	.	.	Atlas-SNP
IFIH1	64135	hgsc.bcm.edu	hg19	2	163139081	163139081	+	Silent	SNP	C	C	A	rs180798633	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	IFIH1	NM_022168	exon6	c.G1101T	p.L367L	AACTAGCAGTACC	.	85.0	37.0	77.0	0.0	.	102	.	C|1.000;G|0.000	Atlas-SNP
DHRS9	10170	hgsc.bcm.edu	hg19	2	169952088	169952088	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DHRS9	NM_005771	exon8	c.G771T	p.V257V	CTATGTGAACATG	.	328.0	125.0	274.0	0.0	.	29	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179639038	179639038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	TTN	NM_001267550	exon30	c.G6953A	p.R2318H	CGTCCACGACGAG	.	132.0	67.0	88.0	0.0	.	18412	.	.	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	hg19	2	187627077	187627077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FAM171B	NM_177454	exon8	c.C2008T	p.P670S	CCGCATCCCAGAG	.	213.0	107.0	193.0	0.0	.	146	.	.	Atlas-SNP
UGT1A1	54658	hgsc.bcm.edu	hg19	2	234669658	234669658	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	UGT1A1	NM_000463	exon1	c.T725A	p.V242E	GAGAGGTGACTGT	.	159.0	65.0	132.0	0.0	.	81	.	.	Atlas-SNP
UGT1A1	54658	hgsc.bcm.edu	hg19	2	234669659	234669659	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	UGT1A1	NM_000463	exon1	c.G726C	p.V242V	AGAGGTGACTGTC	.	162.0	66.0	133.0	0.0	.	81	.	.	Atlas-SNP
CXCR7	57007	hgsc.bcm.edu	hg19	2	237489983	237489983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	CXCR7	NM_020311	exon2	c.C875T	p.A292V	AGCACGCCCTCTT	.	65.0	24.0	41.0	0.0	.	72	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4747976	4747976	+	Missense_Mutation	SNP	C	C	A	rs373619512	alternate_allele	TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	ITPR1_ENST00000357086,colon,carcinoma,0,3	ITPR1	NM_001099952	exon37	c.C4756A	p.R1586S	GCCGCACGCAGGG	.	99.0	38.0	80.0	1.0	.	659	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	bycluster	TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	CTNNB1,gallbladder,other,0,1	CTNNB1	NM_001098209	exon3	c.A121G	p.T41A	GCCACTACCACAG	.	218.0	127.0	133.0	0.0	.	4904	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266165	41266165	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	CTNNB1,NS,carcinoma,+2,1	CTNNB1	NM_001098209	exon3	c.A162C	p.E54D	TGAGGAAGAGGAT	.	206.0	117.0	138.0	0.0	.	4904	.	.	Atlas-SNP
LZTFL1	54585	hgsc.bcm.edu	hg19	3	45872441	45872441	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	LZTFL1	NM_020347	exon7	c.A564G	p.A188A	TTGCAGTGCTTTT	.	149.0	40.0	96.0	0.0	.	37	.	.	Atlas-SNP
TMEM115	11070	hgsc.bcm.edu	hg19	3	50396097	50396097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	TMEM115	NM_007024	exon1	c.T398G	p.V133G	ATACGGACAGTGA	.	227.0	138.0	86.0	0.0	.	20	.	.	Atlas-SNP
GNL3	26354	hgsc.bcm.edu	hg19	3	52724657	52724657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	GNL3	NM_014366	exon7	c.A591C	p.K197N	GAAGAAAGAATTG	.	206.0	65.0	133.0	0.0	.	37	.	.	Atlas-SNP
ALDH1L1	10840	hgsc.bcm.edu	hg19	3	125833489	125833489	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	ALDH1L1	NM_001270364	exon18	c.A2023T	p.S675C	CGTTACTTATGGC	.	63.0	27.0	68.0	0.0	.	138	.	.	Atlas-SNP
STX18	53407	hgsc.bcm.edu	hg19	4	4426917	4426917	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	STX18	NM_016930	exon8	c.A735G	p.E245E	GTTCATTTCACCA	.	94.0	4.0	73.0	0.0	.	16	.	.	Atlas-SNP
WDR1	9948	hgsc.bcm.edu	hg19	4	10079384	10079384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	WDR1	NM_017491	exon13	c.G1562T	p.G521V	GAGTAGCCGTCAG	.	165.0	63.0	100.0	0.0	.	93	.	.	Atlas-SNP
CCDC149	91050	hgsc.bcm.edu	hg19	4	24839840	24839840	+	Nonsense_Mutation	SNP	G	G	A	rs377438836		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	CCDC149	NM_173463	exon6	c.C427T	p.R143X	AGTGTCGCACGCC	.	118.0	5.0	77.0	0.0	.	41	.	.	Atlas-SNP
PDGFRA	5156	hgsc.bcm.edu	hg19	4	55139876	55139876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	PDGFRA	NM_006206	exon10	c.G1537A	p.E513K	AACCGAGAGCTGA	.	46.0	4.0	41.0	0.0	.	1583	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74275115	74275115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	ALB	NM_000477	exon5	c.C526G	p.P176A	TATGCCCCGGAAC	.	239.0	104.0	203.0	0.0	.	132	.	.	Atlas-SNP
MYOZ2	51778	hgsc.bcm.edu	hg19	4	120079231	120079231	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	MYOZ2,NS,malignant_melanoma,0,1	MYOZ2	NM_016599	exon4	c.T301A	p.S101T	GGTGGTTCGCAGC	.	162.0	69.0	133.0	1.0	.	34	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187524333	187524333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FAT1	NM_005245	exon19	c.A11347C	p.K3783Q	TACCTTTGCAGAG	.	139.0	55.0	83.0	0.0	.	500	.	.	Atlas-SNP
NAIP	4671	hgsc.bcm.edu	hg19	5	70308645	70308645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	NAIP	NM_004536	exon4	c.A98T	p.Q33L	GCCAACTGAACTG	.	147.0	89.0	89.0	0.0	.	38	.	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135651445	135651445	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	TRPC7	NM_020389	exon3	c.T803G	p.M268R	CATTGCATAGATA	.	181.0	14.0	100.0	0.0	.	126	.	.	Atlas-SNP
PCDHB3	56132	hgsc.bcm.edu	hg19	5	140480412	140480412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	PCDHB3	NM_018937	exon1	c.C179T	p.A60V	AACTGGCCGCGAG	.	255.0	62.0	125.0	0.0	.	208	.	.	Atlas-SNP
NKX2-5	1482	hgsc.bcm.edu	hg19	5	172661932	172661932	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	NKX2-5	NM_004387	exon1	c.A155T	p.K52M	TCTGGCTTGAAGG	.	212.0	128.0	100.0	0.0	.	42	.	.	Atlas-SNP
FOXF2	2295	hgsc.bcm.edu	hg19	6	1391085	1391085	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FOXF2	NM_001452	exon1	c.G903C	p.G301G	GGCCGGGGGCGGC	.	80.0	14.0	22.0	0.0	.	28	.	.	Atlas-SNP
FOXC1	2296	hgsc.bcm.edu	hg19	6	1612042	1612042	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FOXC1	NM_001453	exon1	c.G1362C	p.G454G	CGGCGGGGGAGGC	.	512.0	24.0	132.0	0.0	.	19	.	.	Atlas-SNP
LYRM4	57128	hgsc.bcm.edu	hg19	6	5109701	5109701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	LYRM4	NM_020408	exon3	c.A232G	p.T78A	TGTCAGTTGAATA	.	406.0	55.0	134.0	0.0	.	5	.	.	Atlas-SNP
HIST1H2AE	3012	hgsc.bcm.edu	hg19	6	26217396	26217396	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	HIST1H2AE	NM_021052	exon1	c.A194T	p.E65V	TCTTAGAGCTAGC	.	394.0	301.0	114.0	0.0	.	25	.	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	hg19	6	43222808	43222808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	TTBK1	NM_032538	exon7	c.C598T	p.R200X	GGGTTTCGAGGAA	.	332.0	55.0	91.0	0.0	.	124	.	.	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	hg19	6	83819950	83819950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DOPEY1	NM_015018	exon6	c.A598G	p.I200V	CCTGGAATCACGT	.	86.0	64.0	137.0	1.0	.	190	.	.	Atlas-SNP
RAPGEF5	9771	hgsc.bcm.edu	hg19	7	22179655	22179655	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	RAPGEF5	NM_012294	exon21	c.G1806A	p.S602S	GGTCTGCGACAGT	.	440.0	118.0	271.0	0.0	.	96	.	.	Atlas-SNP
CDK13	8621	hgsc.bcm.edu	hg19	7	40133994	40133994	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	CDK13	NM_003718	exon14	c.A3954G	p.E1318E	AAGAGAAGGTGGG	.	147.0	39.0	63.0	0.0	.	114	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51095425	51095425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	COBL	NM_015198	exon10	c.A3368G	p.K1123R	CTGTCCTTCCCTC	.	156.0	30.0	82.0	0.0	.	167	.	.	Atlas-SNP
SAMD9	54809	hgsc.bcm.edu	hg19	7	92734707	92734707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	SAMD9	NM_001193307	exon2	c.T704C	p.I235T	AAATGAATAGTGC	.	172.0	46.0	88.0	0.0	.	239	.	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	hg19	7	150695672	150695672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	NOS3	NM_001160111	exon6	c.C720A	p.D240E	AGGAGACTTCCGA	.	137.0	44.0	75.0	0.0	.	131	.	.	Atlas-SNP
WDR60	55112	hgsc.bcm.edu	hg19	7	158718939	158718939	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	WDR60	NM_018051	exon18	c.G2319T	p.T773T	CTCAACGTCCGTC	.	251.0	76.0	163.0	0.0	.	94	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37708463	37708463	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FRMPD1	NM_014907	exon4	c.A327C	p.E109D	TGCTGAAGACCTT	.	85.0	34.0	56.0	0.0	.	237	.	.	Atlas-SNP
FBP1	2203	hgsc.bcm.edu	hg19	9	97367847	97367847	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FBP1	NM_000507	exon6	c.T717A	p.A239A	ATAAGGAGCTGAA	.	84.0	28.0	61.0	0.0	.	13	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	141008886	141008886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	CACNA1B	NM_001243812	exon40	c.A5593G	p.K1865E	TTCTACAAGCAGA	.	111.0	51.0	72.0	0.0	.	266	.	.	Atlas-SNP
MMS19	64210	hgsc.bcm.edu	hg19	10	99219816	99219816	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MMS19	NM_022362	exon26	c.T2643C	p.H881H	AGCAGCATGGAAG	.	143.0	55.0	136.0	0.0	.	36	.	.	Atlas-SNP
MMP21	118856	hgsc.bcm.edu	hg19	10	127456123	127456123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MMP21	NM_147191	exon6	c.T1388C	p.I463T	AAGTAAATTAACT	.	121.0	46.0	85.0	0.0	.	46	.	.	Atlas-SNP
DOCK1	1793	hgsc.bcm.edu	hg19	10	128835982	128835982	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DOCK1	NM_001380	exon19	c.1850-1G>A	.	TTTCCAGTGGACC	.	89.0	37.0	60.0	0.0	.	188	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129914021	129914021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MKI67	NM_002417	exon7	c.A651T	p.E217D	CTTCAATTCTCCA	.	61.0	31.0	49.0	0.0	.	363	.	.	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	hg19	11	721563	721563	+	Splice_Site	SNP	A	A	T	rs111293076	bycluster	TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	EPS8L2	NM_022772	exon10	c.769-2A>T	.	GACCCCAGCAAAT	.	247.0	118.0	154.0	0.0	.	42	.	T|1.000	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411942	6411942	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	SMPD1	NM_000543	exon1	c.G114C	p.A38A	GCTGGCGCTGGCG	.	83.0	7.0	32.0	0.0	.	108	.	.	Atlas-SNP
OR5M11	219487	hgsc.bcm.edu	hg19	11	56310580	56310580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	OR5M11,NS,carcinoma,0,1	OR5M11	NM_001005245	exon1	c.G154A	p.D52N	GAGAGTCCAGTCT	.	140.0	69.0	92.0	0.0	.	60	.	.	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	hg19	11	56468039	56468039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	.	NM_001013358	exon1	c.A176G	p.Y59C	CCATGTATTTTTT	.	68.0	16.0	77.0	0.0	.	.	.	.	Atlas-SNP
HRASLS5	117245	hgsc.bcm.edu	hg19	11	63257813	63257813	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	HRASLS5	NM_001146728	exon2	c.T171C	p.L57L	TAATTCAAGGGGG	.	59.0	21.0	32.0	0.0	.	28	.	.	Atlas-SNP
CATSPER1	117144	hgsc.bcm.edu	hg19	11	65790380	65790380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	CATSPER1	NM_053054	exon2	c.G1369T	p.V457F	GGCAGACAACGAA	.	88.0	37.0	94.0	0.0	.	101	.	.	Atlas-SNP
PICALM	8301	hgsc.bcm.edu	hg19	11	85722082	85722082	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	PICALM	NM_007166	exon7	c.A756C	p.K252N	TGCAACTTTGAGG	.	93.0	39.0	92.0	0.0	.	82	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103156996	103156996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DYNC2H1	NM_001080463	exon75	c.A10924G	p.S3642G	CTCCCCAGTCTTT	.	70.0	27.0	53.0	0.0	.	246	.	.	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	hg19	11	113142501	113142501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	NCAM1	NM_001242607	exon20	c.C2437A	p.P813T	AAGGAGCCCATCG	.	69.0	34.0	68.0	0.0	.	372	.	.	Atlas-SNP
WNT5B	81029	hgsc.bcm.edu	hg19	12	1755095	1755095	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	WNT5B	NM_032642	exon5	c.G757C	p.A253P	AGCGCGGCCGCCA	.	44.0	14.0	32.0	0.0	.	27	.	.	Atlas-SNP
MLF2	8079	hgsc.bcm.edu	hg19	12	6859471	6859471	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MLF2	NM_005439	exon6	c.G271T	p.E91X	TGTGTTCCTGAGG	.	51.0	23.0	48.0	0.0	.	26	.	.	Atlas-SNP
MLF2	8079	hgsc.bcm.edu	hg19	12	6859472	6859472	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MLF2	NM_005439	exon7	c.271-1G>C	.	GTGTTCCTGAGGA	.	51.0	22.0	48.0	0.0	.	26	.	.	Atlas-SNP
A2ML1	144568	hgsc.bcm.edu	hg19	12	9004828	9004828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	A2ML1	NM_144670	exon20	c.C2486T	p.S829L	CTAAATCGCATGA	.	97.0	8.0	92.0	0.0	.	199	.	.	Atlas-SNP
PDE1B	5153	hgsc.bcm.edu	hg19	12	54969802	54969802	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	PDE1B	NM_000924	exon13	c.A1294T	p.T432S	GAGCCCACATTCT	.	59.0	23.0	72.0	0.0	.	76	.	.	Atlas-SNP
PAN2	9924	hgsc.bcm.edu	hg19	12	56720131	56720131	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	PAN2	NM_014871	exon8	c.A1325T	p.Y442F	GGCGCATAGCCAA	.	120.0	48.0	74.0	0.0	.	107	.	.	Atlas-SNP
LRIG3	121227	hgsc.bcm.edu	hg19	12	59307787	59307787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	LRIG3	NM_153377	exon3	c.C359T	p.S120L	TTTGCCGAGACTG	.	68.0	22.0	51.0	0.0	.	120	.	.	Atlas-SNP
C12orf43	64897	hgsc.bcm.edu	hg19	12	121448715	121448715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	C12orf43	NM_022895	exon3	c.A203T	p.E68V	TCATGCTCATTCA	.	147.0	56.0	118.0	0.0	.	30	.	.	Atlas-SNP
SCARB1	949	hgsc.bcm.edu	hg19	12	125299561	125299561	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	SCARB1	NM_005505	exon3	c.C384T	p.G128G	CTCCGAGCCGTGG	.	123.0	5.0	82.0	0.0	.	40	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25255721	25255721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	ATP12A	NM_001185085	exon2	c.G31A	p.V11M	TACTCCGTGGAGC	.	261.0	14.0	225.0	0.0	.	172	.	.	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	hg19	13	70314528	70314528	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	KLHL1	NM_020866	exon8	c.C1800A	p.G600G	TTACTTGCCATTC	.	51.0	34.0	56.0	0.0	.	164	.	.	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60212848	60212848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	RTN1,NS,carcinoma,0,1	RTN1	NM_021136	exon2	c.A593T	p.D198V	GTTATGTCAATGT	.	107.0	26.0	108.0	0.0	.	139	.	.	Atlas-SNP
OR4M2	390538	hgsc.bcm.edu	hg19	15	22368845	22368845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	OR4M2	NM_001004719	exon1	c.G270C	p.K90N	GAGGAAGATAATT	.	175.0	55.0	180.0	0.0	.	140	.	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	hg19	15	29346270	29346270	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	APBA2	NM_005503	exon3	c.G183A	p.Q61Q	GGAACAGGAGTGC	.	221.0	110.0	129.0	0.0	.	132	.	.	Atlas-SNP
KNSTRN	90417	hgsc.bcm.edu	hg19	15	40675151	40675151	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	.	NM_033286	exon1	c.C115T	p.Q39X	GAAACCCAGGCGG	.	105.0	42.0	63.0	0.0	.	.	.	.	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	hg19	15	44876651	44876651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	SPG11	NM_025137	exon30	c.A5227G	p.I1743V	TTGAAATTGAATT	.	92.0	50.0	103.0	0.0	.	207	.	.	Atlas-SNP
DUOX2	50506	hgsc.bcm.edu	hg19	15	45404147	45404147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DUOX2	NM_014080	exon5	c.A332G	p.H111R	AGAACATGGTAGC	.	191.0	90.0	156.0	0.0	.	137	.	.	Atlas-SNP
CRTC3	64784	hgsc.bcm.edu	hg19	15	91181991	91181991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	CRTC3	NM_022769	exon13	c.C1492T	p.P498S	TTCTTCCCAGATG	.	93.0	40.0	87.0	0.0	.	47	.	.	Atlas-SNP
SLX4	84464	hgsc.bcm.edu	hg19	16	3647563	3647563	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	SLX4	NM_032444	exon7	c.G1500T	p.T500T	TGGTGGCGTGCTA	.	111.0	53.0	92.0	0.0	.	173	.	.	Atlas-SNP
SPNS1	83985	hgsc.bcm.edu	hg19	16	28986482	28986482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	SPNS1	NM_001142451	exon1	c.T10C	p.S4P	GCCGGGTCCGACA	.	39.0	17.0	42.0	0.0	.	47	.	.	Atlas-SNP
TANGO6	79613	hgsc.bcm.edu	hg19	16	68894026	68894026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	.	NM_024562	exon2	c.C334T	p.L112F	ATCCGCCTTGCAG	.	114.0	47.0	114.0	0.0	.	.	.	.	Atlas-SNP
NQO1	1728	hgsc.bcm.edu	hg19	16	69752318	69752318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	NQO1	NM_000903	exon2	c.T127G	p.Y43D	TGGCATAGAGGTC	.	97.0	46.0	85.0	0.0	.	21	.	.	Atlas-SNP
FA2H	79152	hgsc.bcm.edu	hg19	16	74752917	74752917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FA2H	NM_024306	exon5	c.T755A	p.L252Q	AAGTGCAGCATGA	.	81.0	32.0	66.0	0.0	.	21	.	.	Atlas-SNP
SPEM1	374768	hgsc.bcm.edu	hg19	17	7324364	7324364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	SPEM1	NM_199339	exon3	c.T370A	p.C124S	GCTCACTGCCCAG	.	106.0	53.0	69.0	0.0	.	41	.	.	Atlas-SNP
EME1	146956	hgsc.bcm.edu	hg19	17	48457826	48457826	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	EME1	NM_001166131	exon8	c.T1539C	p.V513V	TGCAGTTGTGAAT	.	84.0	34.0	67.0	0.0	.	39	.	.	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	hg19	17	72838940	72838940	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	GRIN2C	NM_000835	exon13	c.G3336C	p.S1112S	GCAGGCCGAGTGG	.	51.0	23.0	19.0	0.0	.	144	.	.	Atlas-SNP
FOXK2	3607	hgsc.bcm.edu	hg19	17	80529707	80529707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FOXK2	NM_004514	exon4	c.A870C	p.K290N	CACTAAAAATTAT	.	148.0	52.0	128.0	0.0	.	46	.	.	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	hg19	18	9886755	9886755	+	Silent	SNP	A	A	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	TXNDC2	NM_001098529	exon2	c.A279C	p.S93S	GTCCTCAGCAAAC	.	164.0	12.0	128.0	0.0	.	168	.	.	Atlas-SNP
RIOK3	8780	hgsc.bcm.edu	hg19	18	21053404	21053404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	RIOK3	NM_003831	exon8	c.A827G	p.E276G	AGGATGAAAAGGA	.	297.0	133.0	249.0	0.0	.	42	.	.	Atlas-SNP
DTNA	1837	hgsc.bcm.edu	hg19	18	32418754	32418754	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DTNA	NM_001390	exon12	c.T1218G	p.H406Q	TGAACATGTTCTC	.	139.0	56.0	128.0	0.0	.	321	.	.	Atlas-SNP
ZNF397	84307	hgsc.bcm.edu	hg19	18	32834231	32834231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	ZSCAN30,colon,carcinoma,0,2	ZNF397	NM_032347	exon5	c.C682A	p.R228S	GCTATCCGTTGGG	.	117.0	48.0	109.0	1.0	.	51	.	.	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	hg19	19	5456638	5456638	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	ZNRF4	NM_181710	exon1	c.A1136T	p.H379L	CGGGCCACCGGCC	.	107.0	45.0	58.0	0.0	.	59	.	.	Atlas-SNP
MLLT1	4298	hgsc.bcm.edu	hg19	19	6213406	6213406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MLLT1	NM_005934	exon11	c.A1493G	p.E498G	ACCAGCTCATCCG	.	72.0	29.0	49.0	0.0	.	47	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9083038	9083038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MUC16	NM_024690	exon1	c.C8777T	p.S2926F	GAGGAAGATGCTG	.	203.0	93.0	143.0	0.0	.	4315	.	.	Atlas-SNP
ZNF181	339318	hgsc.bcm.edu	hg19	19	35231867	35231867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	ZNF181	NM_001029997	exon4	c.A581G	p.K194R	TACCAAAAAAGTC	.	420.0	195.0	343.0	1.0	.	65	.	.	Atlas-SNP
PTH2	113091	hgsc.bcm.edu	hg19	19	49926536	49926536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	PTH2	NM_178449	exon1	c.C61G	p.L21V	CCAGCAGCAGCAG	.	129.0	12.0	51.0	0.0	.	20	.	.	Atlas-SNP
PTH2	113091	hgsc.bcm.edu	hg19	19	49926539	49926539	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	PTH2	NM_178449	exon1	c.C58G	p.L20V	GCAGCAGCAGCAG	.	123.0	14.0	48.0	0.0	.	20	.	.	Atlas-SNP
LILRA5	353514	hgsc.bcm.edu	hg19	19	54822602	54822602	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	LILRA5	NM_181879	exon5	c.G794C	p.C265S	TCTTAGCAGGGGC	.	91.0	10.0	68.0	0.0	.	49	.	.	Atlas-SNP
NOP56	10528	hgsc.bcm.edu	hg19	20	2635441	2635441	+	Silent	SNP	G	G	A	rs140571524	alternate_allele	TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	NOP56	NM_006392	exon5	c.G417A	p.L139L	CGATCTGTCAGCT	.	72.0	28.0	55.0	0.0	.	73	.	G|1.000;T|0.000	Atlas-SNP
RRP1B	23076	hgsc.bcm.edu	hg19	21	45107430	45107430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	RRP1B	NM_015056	exon13	c.G1175A	p.S392N	AGGACAGTGAAAG	.	29.0	16.0	22.0	0.0	.	51	.	.	Atlas-SNP
AIRE	326	hgsc.bcm.edu	hg19	21	45707002	45707002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	AIRE	NM_000383	exon3	c.G449T	p.G150V	CAAGGGGCACCGC	.	150.0	40.0	102.0	0.0	.	61	.	.	Atlas-SNP
PIWIL3	440822	hgsc.bcm.edu	hg19	22	25155853	25155853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	PIWIL3	NM_001008496	exon3	c.G206A	p.G69E	GCTCCTCCTCCTG	.	70.0	35.0	39.0	0.0	.	115	.	.	Atlas-SNP
TAB1	10454	hgsc.bcm.edu	hg19	22	39817945	39817945	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	TAB1	NM_153497	exon8	c.A890T	p.E297V	CCCTAGAGGCAGC	.	118.0	51.0	101.0	0.0	.	36	.	.	Atlas-SNP
ACE2	59272	hgsc.bcm.edu	hg19	X	15609834	15609834	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	ACE2	NM_021804	exon6	c.583+2T>C	.	AAACTTACGATTT	.	121.0	110.0	53.0	0.0	.	87	.	.	Atlas-SNP
KDM5C	8242	hgsc.bcm.edu	hg19	X	53230776	53230776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	KDM5C	NM_004187	exon14	c.A2017G	p.M673V	GCACCATGATGAA	.	142.0	6.0	77.0	0.0	.	385	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12345	12345	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	.	ENST00000361567	exon1	c.G9A	p.M3M	AACCATGCACACT	.	80.0	76.0	12.0	0.0	.	.	.	.	Atlas-SNP
USP37	57695	hgsc.bcm.edu	hg19	2	219330793	219330794	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	USP37	NM_020935	exon21	c.2406_2407insT	p.M802fs	.	.	60.0	23.0	43.0	0.0	.	76	.	.	Atlas-INDEL
FBXL18	80028	hgsc.bcm.edu	hg19	7	5540596	5540605	+	Frame_Shift_Del	DEL	GCGCGGTCGG	GCGCGGTCGG	-	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	GCGCGGTCGG	GCGCGGTCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	FBXL18	NM_024963	exon3	c.1296_1305del	p.432_435del	.	.	73.0	24.0	37.0	0.0	.	99	.	.	Atlas-INDEL
MYO16	23026	hgsc.bcm.edu	hg19	13	109644729	109644729	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	MYO16	NM_001198950	exon21	c.2374delC	p.Q792fs	.	.	85.0	37.0	79.0	0.0	.	285	.	.	Atlas-INDEL
NCKAP1L	3071	hgsc.bcm.edu	hg19	12	54917217	54917223	+	Frame_Shift_Del	DEL	AAGAACA	AAGAACA	-	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	AAGAACA	AAGAACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	NCKAP1L	NM_005337	exon19	c.1917_1923del	p.639_641del	.	.	210.0	64.0	182.0	0.0	.	180	.	.	Atlas-INDEL
DDX60L	91351	hgsc.bcm.edu	hg19	4	169369922	169369922	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AAW2-01A-11D-A40P-10	TCGA-DD-AAW2-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	91d7e3b8-5b43-4687-82e3-fd0f5f872589	8038b7be-ceb3-48e7-a9a2-b55e0e60721f	.	DDX60L	NM_001012967	exon9	c.1006delT	p.C336fs	.	.	376.0	176.0	377.0	0.0	.	116	.	.	Atlas-INDEL
