Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TTC34	100287898	hgsc.bcm.edu	hg19	1	2704267	2704267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	TTC34	NM_001242672	exon2	c.G94A	p.A32T	CGCAGGCGACCCT	.	146.0	70.0	144.0	0.0	.	2	.	.	Atlas-SNP
PIK3CD	5293	hgsc.bcm.edu	hg19	1	9778944	9778944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	PIK3CD	NM_005026	exon9	c.C1213T	p.R405C	AAGGCTCGCTCCA	.	57.0	20.0	65.0	0.0	.	86	.	.	Atlas-SNP
MROH7	374977	hgsc.bcm.edu	hg19	1	55158176	55158176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_001039464	exon16	c.G2791A	p.G931S	CAGGGTGGCTGGG	.	72.0	30.0	45.0	0.0	.	.	.	.	Atlas-SNP
MROH7	374977	hgsc.bcm.edu	hg19	1	55158177	55158177	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_001039464	exon16	c.G2792C	p.G931A	AGGGTGGCTGGGA	.	73.0	30.0	46.0	0.0	.	.	.	.	Atlas-SNP
PTBP2	58155	hgsc.bcm.edu	hg19	1	97250726	97250726	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	PTBP2	NM_021190	exon8	c.C820T	p.R274X	TATACTCGACCTG	.	83.0	30.0	90.0	0.0	.	62	.	.	Atlas-SNP
SYT6	148281	hgsc.bcm.edu	hg19	1	114680598	114680598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SYT6	NM_205848	exon3	c.C335T	p.A112V	TCTGCTGCTGGTG	.	56.0	27.0	45.0	0.0	.	66	.	.	Atlas-SNP
AMPD1	270	hgsc.bcm.edu	hg19	1	115222318	115222318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	AMPD1	NM_000036	exon7	c.C878T	p.T293I	CGGTGGGTATAGG	.	114.0	52.0	114.0	0.0	.	223	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152283840	152283840	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	FLG	NM_002016	exon3	c.A3522T	p.G1174G	CCTTCCTCCTCTC	.	119.0	65.0	76.0	0.0	.	900	.	.	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	hg19	1	156303356	156303356	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	CCT3	NM_005998	exon5	c.A286T	p.T96S	CTGATGTGGTCCC	.	60.0	38.0	36.0	0.0	.	61	.	.	Atlas-SNP
PRCC	5546	hgsc.bcm.edu	hg19	1	156737670	156737670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	PRCC	NM_005973	exon1	c.G107C	p.G36A	CTTTAGGGGGCTT	.	226.0	58.0	181.0	0.0	.	39	.	.	Atlas-SNP
SLC9C2	284525	hgsc.bcm.edu	hg19	1	173556888	173556888	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_178527	exon5	c.T439A	p.W147R	AATCCCATGAATC	.	128.0	61.0	102.0	0.0	.	.	.	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196398776	196398776	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	KCNT2	NM_198503	exon9	c.T750A	p.P250P	TGTTTCAGGAGTG	.	595.0	360.0	418.0	0.0	.	243	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237804207	237804207	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	RYR2	NM_001035	exon47	c.G7126T	p.E2376X	ACAGAGGAGGAGG	.	80.0	54.0	54.0	0.0	.	1273	.	.	Atlas-SNP
OR14C36	127066	hgsc.bcm.edu	hg19	1	248512967	248512967	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	OR14C36	NM_001001918	exon1	c.G891A	p.V297V	AAAGGTGGCCATC	.	119.0	24.0	94.0	0.0	.	113	.	.	Atlas-SNP
DDX1	1653	hgsc.bcm.edu	hg19	2	15758310	15758310	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	DDX1	NM_004939	exon16	c.G1122T	p.G374G	GGATGGGCTTCTT	.	186.0	73.0	212.0	0.0	.	70	.	.	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	hg19	2	26702479	26702479	+	Missense_Mutation	SNP	C	C	T	rs142370721		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	OTOF	NM_194248	exon17	c.G1955A	p.R652Q	CGAGGCCGCTGGG	.	90.0	33.0	102.0	0.0	.	524	.	C|1.000;T|0.000	Atlas-SNP
TTC7A	57217	hgsc.bcm.edu	hg19	2	47278963	47278963	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	TTC7A	NM_020458	exon18	c.T2096A	p.L699Q	CGGTCCTGAAGCA	.	106.0	39.0	95.0	0.0	.	80	.	.	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	hg19	2	97274685	97274685	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_001115016	exon13	c.A1500G	p.R500R	CAAGTCTCTGCGG	.	103.0	7.0	109.0	0.0	.	.	.	.	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	hg19	2	97274687	97274687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_001115016	exon13	c.A1498G	p.R500G	AGTCTCTGCGGGC	.	102.0	6.0	110.0	0.0	.	.	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141459290	141459290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	LRP1B	NM_018557	exon40	c.G6427A	p.G2143R	GCTGACCTTTCTC	.	54.0	21.0	63.0	0.0	.	1315	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160231234	160231234	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	BAZ2B	NM_013450	exon26	c.G4036T	p.E1346X	CCAGCTCTTCAAC	.	39.0	11.0	36.0	0.0	.	196	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170101205	170101205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	LRP2	NM_004525	exon22	c.G3428T	p.C1143F	TTACTGCAGTTCT	.	39.0	14.0	48.0	0.0	.	751	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179427083	179427083	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	TTN	NM_001267550	exon326	c.T83776C	p.L27926L	CAGTTAAGCCAGA	.	62.0	29.0	67.0	0.0	.	18412	.	.	Atlas-SNP
CDK15	65061	hgsc.bcm.edu	hg19	2	202698631	202698631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	CDK15	NM_001261435	exon7	c.A667G	p.R223G	CTTCACAGGGACC	.	73.0	29.0	95.0	0.0	.	66	.	.	Atlas-SNP
SUSD5	26032	hgsc.bcm.edu	hg19	3	33195306	33195306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SUSD5	NM_015551	exon5	c.C818T	p.P273L	GCACCAGGCAAGC	.	54.0	42.0	49.0	0.0	.	53	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	108.0	90.0	107.0	1.0	.	4904	.	.	Atlas-SNP
GNL3	26354	hgsc.bcm.edu	hg19	3	52720072	52720072	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	GNL3	.	.	.	.	GCGGAGGCAGGTT	.	50.0	37.0	69.0	0.0	.	37	.	.	Atlas-SNP
TMEM110-MUSTN1	100526772	hgsc.bcm.edu	hg19	3	52877737	52877737	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_001198974	exon6	c.C618T	p.N206N	ACTGACGTTGACA	.	47.0	39.0	51.0	0.0	.	.	.	.	Atlas-SNP
CBLB	868	hgsc.bcm.edu	hg19	3	105404274	105404274	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	CBLB	NM_170662	exon14	c.A2091G	p.K697K	TCTTGTTTTCTCT	.	65.0	30.0	99.0	0.0	.	118	.	.	Atlas-SNP
MORC1	27136	hgsc.bcm.edu	hg19	3	108819341	108819341	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	MORC1	NM_014429	exon5	c.C237T	p.D79D	AATGATGTCTGAA	.	102.0	44.0	90.0	0.0	.	211	.	.	Atlas-SNP
TRH	7200	hgsc.bcm.edu	hg19	3	129696007	129696007	+	Missense_Mutation	SNP	G	G	A	rs149654673	bycluster	TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	TRH	NM_007117	exon3	c.G677A	p.R226Q	AAAAGCGGCAGCA	.	36.0	12.0	39.0	0.0	.	30	.	G|1.000;A|0.000	Atlas-SNP
TP63	8626	hgsc.bcm.edu	hg19	3	189584586	189584586	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	TP63	NM_001114979	exon6	c.G882A	p.Q294Q	ACCCCAGGTAAAA	.	172.0	63.0	185.0	0.0	.	187	.	.	Atlas-SNP
TRAM1L1	133022	hgsc.bcm.edu	hg19	4	118005493	118005493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	TRAM1L1	NM_152402	exon1	c.G1057T	p.E353X	AAGTTTCCACTCC	.	84.0	31.0	97.0	0.0	.	55	.	.	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	hg19	4	138451631	138451631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	PCDH18	NM_019035	exon1	c.G1612T	p.V538L	GACTCACTTCTTC	.	76.0	30.0	77.0	0.0	.	229	.	.	Atlas-SNP
KIAA1430	57587	hgsc.bcm.edu	hg19	4	186111951	186111951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	KIAA1430	NM_020827	exon2	c.G400T	p.D134Y	CTCCATCTGTGTA	.	90.0	43.0	81.0	0.0	.	55	.	.	Atlas-SNP
DHX29	54505	hgsc.bcm.edu	hg19	5	54581616	54581616	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	DHX29	NM_019030	exon9	c.A1140G	p.K380K	AAATTGTTTGGGA	.	136.0	48.0	144.0	0.0	.	116	.	.	Atlas-SNP
IQGAP2	10788	hgsc.bcm.edu	hg19	5	75886316	75886316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	IQGAP2	NM_006633	exon8	c.G724A	p.A242T	CCAAATGCGGTTT	.	130.0	51.0	131.0	0.0	.	186	.	.	Atlas-SNP
UNC5CL	222643	hgsc.bcm.edu	hg19	6	40998166	40998166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	UNC5CL	NM_173561	exon8	c.G1295A	p.R432K	GCCAGTCTGCGCC	.	194.0	22.0	87.0	0.0	.	52	.	.	Atlas-SNP
GCLC	2729	hgsc.bcm.edu	hg19	6	53364926	53364926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	GCLC	NM_001498	exon15	c.C1619A	p.S540Y	AGGTAAGAGTTCA	.	214.0	49.0	93.0	0.0	.	58	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56481993	56481993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	DST	NM_001723	exon24	c.G6272A	p.G2091E	CTAAGCCCTTGGA	.	119.0	23.0	50.0	0.0	.	1427	.	.	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	hg19	6	154360440	154360440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	OPRM1	NM_001145279	exon2	c.G145T	p.A49S	GGGGCAGGTGATG	.	52.0	40.0	80.0	0.0	.	241	.	.	Atlas-SNP
ASZ1	136991	hgsc.bcm.edu	hg19	7	117003700	117003700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	ASZ1	NM_130768	exon13	c.G1378A	p.G460R	CGAATCCGCATAT	.	93.0	16.0	83.0	0.0	.	56	.	.	Atlas-SNP
STRIP2	57464	hgsc.bcm.edu	hg19	7	129102863	129102863	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_020704	exon14	c.C1533T	p.Y511Y	GCTGTACAGCCTT	.	64.0	14.0	65.0	0.0	.	.	.	.	Atlas-SNP
MKLN1	4289	hgsc.bcm.edu	hg19	7	131122635	131122635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	MKLN1	NM_013255	exon10	c.T1052C	p.V351A	CCTCTGTGAGGAA	.	149.0	31.0	112.0	0.0	.	67	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	92982954	92982954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	RUNX1T1_ENST00000436581,NS,carcinoma,0,5	RUNX1T1	NM_001198679	exon11	c.G1648A	p.A550T	CCTCGGCGACCGT	.	124.0	26.0	67.0	0.0	.	516	.	.	Atlas-SNP
MAL2	114569	hgsc.bcm.edu	hg19	8	120220776	120220776	+	Splice_Site	SNP	G	G	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_052886	exon1	c.64+1G>C	.	CGCCCCGGGGTCA	.	81.0	13.0	34.0	0.0	.	.	.	.	Atlas-SNP
HSF1	3297	hgsc.bcm.edu	hg19	8	145533250	145533250	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	HSF1	NM_005526	exon3	c.T336A	p.L112L	GCTCCTTGAGAAC	.	353.0	250.0	172.0	0.0	.	29	.	.	Atlas-SNP
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21971190	21971190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	CDKN2A_ENST00000361570,NS,carcinoma,+1,1	CDKN2A	NM_058195	exon2	c.C211A	p.R71S	TCGGGCGCTGCCC	.	39.0	17.0	42.0	0.0	.	4810	.	.	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100105806	100105806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_020893	exon19	c.T2591C	p.V864A	AACAAGTGACAAT	.	59.0	20.0	57.0	0.0	.	.	.	.	Atlas-SNP
ACTL7B	10880	hgsc.bcm.edu	hg19	9	111617761	111617761	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	ACTL7B	NM_006686	exon1	c.C450T	p.S150S	AGGGTCGGAGACC	.	53.0	16.0	64.0	0.0	.	57	.	.	Atlas-SNP
GPSM1	26086	hgsc.bcm.edu	hg19	9	139234263	139234263	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	GPSM1	NM_015597	exon8	c.C1074T	p.I358I	GCAGATCTCCCAG	.	55.0	27.0	63.0	0.0	.	50	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139902954	139902954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	ABCA2	NM_212533	exon48	c.C7279A	p.P2427T	CCGTGGGGGCAGA	.	61.0	23.0	60.0	0.0	.	113	.	.	Atlas-SNP
FUT7	2529	hgsc.bcm.edu	hg19	9	139925353	139925353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	FUT7	NM_004479	exon2	c.G838A	p.A280T	CTCGGGCTGAGCC	.	65.0	26.0	43.0	0.0	.	24	.	.	Atlas-SNP
RASGEF1A	221002	hgsc.bcm.edu	hg19	10	43691966	43691966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	RASGEF1A	NM_145313	exon12	c.G1379A	p.G460D	TCGGGACCCTCAC	.	59.0	21.0	50.0	0.0	.	66	.	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64952883	64952883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	JMJD1C	NM_032776	exon16	c.A5891G	p.N1964S	ATTTTATTACTGT	.	17.0	6.0	20.0	0.0	.	347	.	.	Atlas-SNP
TBATA	219793	hgsc.bcm.edu	hg19	10	72536989	72536989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_152710	exon7	c.T610C	p.S204P	GGTGAGATCTGCG	.	38.0	12.0	40.0	0.0	.	.	.	.	Atlas-SNP
PTEN	5728	hgsc.bcm.edu	hg19	10	89685287	89685287	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	PTEN,NS,carcinoma,0,10	PTEN	NM_000314	exon3	c.A182T	p.H61L	CAAAGCATAAAAA	.	1334.0	544.0	1343.0	1.0	.	3652	.	.	Atlas-SNP
CHUK	1147	hgsc.bcm.edu	hg19	10	101967049	101967049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	CHUK	NM_001278	exon11	c.G1169A	p.S390N	GTTTTACTTTTAT	.	59.0	13.0	75.0	0.0	.	71	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	107022244	107022244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SORCS3	NM_014978	exon26	c.T3599C	p.V1200A	CGCGGGTCATAGG	.	59.0	28.0	62.0	0.0	.	282	.	.	Atlas-SNP
COPB1	1315	hgsc.bcm.edu	hg19	11	14512195	14512195	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	COPB1	NM_001144062	exon5	c.T522C	p.P174P	CAGTTCAGGAGCA	.	153.0	53.0	170.0	0.0	.	81	.	.	Atlas-SNP
OR8H2	390151	hgsc.bcm.edu	hg19	11	55872580	55872580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	OR8H2	NM_001005200	exon1	c.C62T	p.S21F	CACTTTCTGAAGA	.	76.0	32.0	88.0	0.0	.	117	.	.	Atlas-SNP
OR5T3	390154	hgsc.bcm.edu	hg19	11	56019703	56019703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	OR5T3	NM_001004747	exon1	c.C28T	p.L10F	TATAACCTTTATA	.	55.0	19.0	64.0	0.0	.	98	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62293842	62293842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	AHNAK	NM_001620	exon5	c.A8047G	p.I2683V	CTTCAATGTTAAC	.	101.0	42.0	85.0	0.0	.	532	.	.	Atlas-SNP
PIH1D2	120379	hgsc.bcm.edu	hg19	11	111941928	111941928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	PIH1D2	NM_001082619	exon4	c.G381T	p.Q127H	AATTAACTGATTT	.	57.0	29.0	52.0	0.0	.	24	.	.	Atlas-SNP
KCNJ1	3758	hgsc.bcm.edu	hg19	11	128709552	128709552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	KCNJ1	NM_000220	exon2	c.A644G	p.N215S	CTGAGATTAGCCA	.	72.0	32.0	71.0	0.0	.	68	.	.	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6128399	6128399	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	VWF	NM_000552	exon28	c.G4185T	p.R1395R	AAAGTTCCGGGAC	.	42.0	15.0	40.0	0.0	.	338	.	.	Atlas-SNP
CLSTN3	9746	hgsc.bcm.edu	hg19	12	7288407	7288407	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	CLSTN3	NM_014718	exon5	c.T600A	p.I200I	GAACATTGAGAAC	.	53.0	26.0	64.0	0.0	.	84	.	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	hg19	12	50746094	50746094	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	FAM186A_ENST00000327337,NS,carcinoma,0,8	FAM186A	NM_001145475	exon4	c.C4521G	p.L1507L	AGGGATGAGAAGG	.	117.0	5.0	107.0	0.0	.	181	.	.	Atlas-SNP
KRT86	3892	hgsc.bcm.edu	hg19	12	52699514	52699514	+	Missense_Mutation	SNP	A	A	T	rs373358594	alternate_allele	TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	KRT86	NM_002284	exon6	c.A968T	p.N323I	AGATCAACGAGCT	.	105.0	40.0	111.0	0.0	.	33	.	.	Atlas-SNP
MFSD5	84975	hgsc.bcm.edu	hg19	12	53646678	53646678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	MFSD5	NM_001170790	exon2	c.A380G	p.E127G	GGCTGGAACTGTC	.	65.0	31.0	65.0	0.0	.	40	.	.	Atlas-SNP
IKZF4	64375	hgsc.bcm.edu	hg19	12	56429110	56429110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	IKZF4	NM_022465	exon8	c.G1753A	p.G585S	AAGGTGGGCTAGC	.	49.0	16.0	37.0	0.0	.	71	.	.	Atlas-SNP
SLC26A10	65012	hgsc.bcm.edu	hg19	12	58015473	58015473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SLC26A10	NM_133489	exon4	c.A556G	p.T186A	CCTCAGACGCTGG	.	46.0	20.0	67.0	0.0	.	89	.	.	Atlas-SNP
GIT2	9815	hgsc.bcm.edu	hg19	12	110370863	110370863	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	GIT2	NM_057169	exon20	c.C2200G	p.Q734E	TGACCTGCTGCGT	.	53.0	23.0	66.0	0.0	.	81	.	.	Atlas-SNP
PIWIL1	9271	hgsc.bcm.edu	hg19	12	130832690	130832690	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	PIWIL1	NM_004764	exon7	c.T696C	p.Y232Y	AAATTATTATAAC	.	65.0	28.0	103.0	0.0	.	157	.	.	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25367348	25367348	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	RNF17	NM_001184993	exon10	c.T1104C	p.D368D	AAATGATGTACAT	.	101.0	42.0	115.0	0.0	.	259	.	.	Atlas-SNP
HMGB1	3146	hgsc.bcm.edu	hg19	13	31035522	31035522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	HMGB1	NM_002128	exon5	c.A620T	p.D207V	TCTTCATCTTCAT	.	66.0	29.0	58.0	0.0	.	21	.	.	Atlas-SNP
ITM2B	9445	hgsc.bcm.edu	hg19	13	48807572	48807572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	ITM2B	NM_021999	exon1	c.G76T	p.A26S	GAGGAGGCGCTCA	.	150.0	63.0	113.0	0.0	.	24	.	.	Atlas-SNP
ING1	3621	hgsc.bcm.edu	hg19	13	111368119	111368119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	ING1	NM_005537	exon1	c.G329T	p.R110L	TCTCCCGCTGGCC	.	25.0	9.0	26.0	0.0	.	106	.	.	Atlas-SNP
PCK2	5106	hgsc.bcm.edu	hg19	14	24572747	24572747	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	PCK2	NM_004563	exon10	c.C1497T	p.A499A	ATTTGCCATGCGG	.	90.0	43.0	102.0	0.0	.	66	.	.	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25928550	25928550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	ATP10A	NM_024490	exon17	c.C3375A	p.F1125L	ATTAAAGAAGATT	.	175.0	79.0	178.0	0.0	.	270	.	.	Atlas-SNP
NOP10	55505	hgsc.bcm.edu	hg19	15	34635263	34635263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	NOP10	NM_018648	exon1	c.G12T	p.Q4H	GTAATACTGGAGA	.	81.0	36.0	87.0	0.0	.	8	.	.	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	hg19	15	44859685	44859685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SPG11	NM_025137	exon36	c.A6691G	p.I2231V	CGCCAATCTCCCG	.	51.0	25.0	57.0	0.0	.	207	.	.	Atlas-SNP
SEMA4B	10509	hgsc.bcm.edu	hg19	15	90764627	90764627	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SEMA4B	NM_020210	exon7	c.C624T	p.S208S	AGTCAGCAGCTTC	.	69.0	26.0	62.0	0.0	.	51	.	.	Atlas-SNP
MAPK8IP3	23162	hgsc.bcm.edu	hg19	16	1816360	1816360	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	MAPK8IP3	NM_015133	exon22	c.C2766T	p.H922H	AGAGCACGTCTTC	.	112.0	11.0	104.0	0.0	.	164	.	.	Atlas-SNP
FAM92B	339145	hgsc.bcm.edu	hg19	16	85132897	85132897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	FAM92B	NM_198491	exon8	c.C809T	p.A270V	TGATTGGCATGAG	.	61.0	28.0	87.0	0.0	.	29	.	.	Atlas-SNP
GLP2R	9340	hgsc.bcm.edu	hg19	17	9729508	9729508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	GLP2R	NM_004246	exon1	c.G128A	p.C43Y	GGAAGTGCTCTCT	.	35.0	9.0	44.0	0.0	.	90	.	.	Atlas-SNP
TPGS1	91978	hgsc.bcm.edu	hg19	19	519025	519025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	NM_033513	exon2	c.G475A	p.E159K	CCCGAGGAGGTGG	.	46.0	23.0	38.0	0.0	.	.	.	.	Atlas-SNP
ADAMTS10	81794	hgsc.bcm.edu	hg19	19	8661267	8661267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	ADAMTS10	NM_030957	exon10	c.C1114T	p.R372C	TCTCGCGCTCACA	.	43.0	6.0	44.0	0.0	.	132	.	.	Atlas-SNP
ZNF878	729747	hgsc.bcm.edu	hg19	19	12154963	12154963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	ZNF878	NM_001080404	exon4	c.C1253T	p.T418I	TCTCCTGTGTGAG	.	47.0	22.0	57.0	0.0	.	172	.	.	Atlas-SNP
POP4	10775	hgsc.bcm.edu	hg19	19	30099579	30099579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	POP4	NM_006627	exon2	c.C23T	p.A8V	ACCATGCATTGTC	.	42.0	18.0	59.0	0.0	.	20	.	.	Atlas-SNP
CEBPA	1050	hgsc.bcm.edu	hg19	19	33792753	33792753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	CEBPA	NM_004364	exon1	c.T568C	p.S190P	GGTGCGAGGGCGG	.	129.0	12.0	71.0	0.0	.	986	.	.	Atlas-SNP
FGF21	26291	hgsc.bcm.edu	hg19	19	49259647	49259647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	FGF21	NM_019113	exon1	c.G154A	p.D52N	TACACAGATGATG	.	46.0	18.0	44.0	0.0	.	21	.	.	Atlas-SNP
RUVBL2	10856	hgsc.bcm.edu	hg19	19	49506571	49506571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	RUVBL2	NM_006666	exon3	c.G103A	p.D35N	CTGGACGATGCCT	.	83.0	39.0	93.0	0.0	.	31	.	.	Atlas-SNP
SIGLEC5	8778	hgsc.bcm.edu	hg19	19	52130954	52130954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SIGLEC5	NM_003830	exon6	c.G1043A	p.G348D	TGCAGACCCTCAG	.	44.0	19.0	30.0	0.0	.	67	.	.	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	hg19	20	3674951	3674951	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SIGLEC1	NM_023068	exon12	c.T3173A	p.M1058K	TCCAGCATAGCCC	.	92.0	44.0	102.0	0.0	.	210	.	.	Atlas-SNP
CST11	140880	hgsc.bcm.edu	hg19	20	23432513	23432513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	CST11	NM_130794	exon2	c.G273T	p.W91C	GGTGGTCCACTGC	.	62.0	32.0	61.0	0.0	.	27	.	.	Atlas-SNP
SDC4	6385	hgsc.bcm.edu	hg19	20	43964503	43964503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	SDC4	NM_002999	exon2	c.G118A	p.G40R	GGGCTCCGGAGAA	.	37.0	14.0	44.0	0.0	.	16	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32235165	32235165	+	Silent	SNP	A	A	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	DMD	NM_004006	exon44	c.T6306A	p.S2102S	CTCAACAGATCTG	.	202.0	176.0	174.0	0.0	.	2127	.	.	Atlas-SNP
MAGEC3	139081	hgsc.bcm.edu	hg19	X	140926121	140926121	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	MAGEC3	NM_138702	exon1	c.G20C	p.W7S	GCCACTGGGTGTT	.	86.0	76.0	89.0	0.0	.	228	.	.	Atlas-SNP
NLGN4Y	22829	hgsc.bcm.edu	hg19	Y	16942170	16942170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	NLGN4Y	NM_014893	exon5	c.G1372T	p.D458Y	ACCGCCGACCTGC	.	149.0	119.0	157.0	0.0	.	44	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9591	9591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	.	ENST00000362079	exon1	c.G385A	p.V129I	CTAGAAGTCCCAC	.	44.0	40.0	23.0	0.0	.	.	.	.	Atlas-SNP
FAM45A	404636	hgsc.bcm.edu	hg19	10	120879889	120879890	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	FAM45A	NM_207009	exon5	c.518_519insA	p.L173fs	.	.	240.0	100.0	289.0	0.0	.	30	.	.	Atlas-INDEL
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20222202	20222203	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	RPS6KA3	NM_004586	exon4	c.263_264insA	p.I88fs	.	.	112.0	32.0	107.0	0.0	.	110	.	.	Atlas-INDEL
C9orf131	138724	hgsc.bcm.edu	hg19	9	35044496	35044497	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	C9orf131	NM_203299	exon2	c.1869_1870del	p.623_624del	.	.	59.0	25.0	98.0	0.0	.	71	.	.	Atlas-INDEL
PCLO	27445	hgsc.bcm.edu	hg19	7	82585150	82585157	+	Frame_Shift_Del	DEL	AGTCTGTC	AGTCTGTC	-	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	AGTCTGTC	AGTCTGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	PCLO	NM_014510	exon5	c.5113_5120del	p.1705_1707del	.	.	130.0	23.0	97.0	0.0	.	1506	.	.	Atlas-INDEL
CENPH	64946	hgsc.bcm.edu	hg19	5	68492921	68492921	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	CENPH	NM_022909	exon5	c.355delA	p.I119fs	.	.	247.0	110.0	260.0	0.0	.	28	.	.	Atlas-INDEL
FZD2	2535	hgsc.bcm.edu	hg19	17	42635670	42635675	+	In_Frame_Del	DEL	TCAAGG	TCAAGG	-	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	TCAAGG	TCAAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	FZD2	NM_001466	exon1	c.613_618del	p.205_206del	.	.	35.0	11.0	49.0	0.0	.	81	.	.	Atlas-INDEL
TTC19	54902	hgsc.bcm.edu	hg19	17	15930009	15930023	+	In_Frame_Del	DEL	GCACAGAGGTAGGTA	GCACAGAGGTAGGTA	-	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	GCACAGAGGTAGGTA	GCACAGAGGTAGGTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	TTC19	NM_017775	exon9	c.986_994del	p.329_332del	.	.	79.0	15.0	94.0	0.0	.	10	.	.	Atlas-INDEL
FAM117B	150864	hgsc.bcm.edu	hg19	2	203630340	203630341	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAW3-01A-11D-A40P-10	TCGA-DD-AAW3-10A-01D-A40P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	07d529e0-2ba2-49d7-b348-2ef3d52cc0ce	e3ae1920-aeb7-4aa2-b8c2-f83450414f08	.	FAM117B	NM_173511	exon8	c.1623_1624insA	p.G541fs	.	.	62.0	29.0	83.0	0.0	.	73	.	.	Atlas-INDEL
