Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HMCN1	83872	hgsc.bcm.edu	hg19	1	185897698	185897698	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	HMCN1	NM_031935	exon10	c.T1451G	p.L484X	TGAACTTAGATAT	.	81.0	8.0	49.0	0.0	.	797	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240286619	240286619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	FMN2	NM_020066	exon2	c.G1756A	p.A586T	CAGAATGCCCAGA	.	95.0	82.0	43.0	0.0	.	451	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32641025	32641025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	BIRC6	NM_016252	exon10	c.T2666C	p.F889S	ATGGTTTTGAGAG	.	184.0	40.0	144.0	0.0	.	838	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	51255367	51255367	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	NRXN1	NM_004801	exon2	c.C45A	p.C15X	CGAGAGGCACAGA	.	17.0	9.0	16.0	0.0	.	1118	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197184307	197184307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	HECW2	NM_020760	exon9	c.G1307A	p.C436Y	TCAGAGCAGGTCG	.	85.0	29.0	87.0	0.0	.	239	.	.	Atlas-SNP
IL17RD	54756	hgsc.bcm.edu	hg19	3	57130461	57130461	+	Missense_Mutation	SNP	C	C	T	rs146776354		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	IL17RD	NM_017563	exon13	c.G2180A	p.R727H	TAGCTGCGGCAAC	.	120.0	29.0	118.0	0.0	.	93	.	C|1.000;T|0.000	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130293202	130293202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	COL6A6	NM_001102608	exon7	c.A3380G	p.H1127R	TGAGACACAGAGG	.	183.0	74.0	171.0	0.0	.	497	.	.	Atlas-SNP
IRF2	3660	hgsc.bcm.edu	hg19	4	185339323	185339323	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	IRF2,NS,carcinoma,0,1	IRF2	NM_002199	exon5	c.A409T	p.K137X	TTACCTTGATGTG	.	94.0	65.0	183.0	0.0	.	53	.	.	Atlas-SNP
SNX14	57231	hgsc.bcm.edu	hg19	6	86223594	86223594	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SNX14	NM_153816	exon26	c.C2577T	p.N859N	TTCAGTGTTTTCA	.	39.0	5.0	48.0	0.0	.	58	.	.	Atlas-SNP
CLDN20	49861	hgsc.bcm.edu	hg19	6	155597357	155597357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CLDN20	NM_001001346	exon2	c.C504A	p.F168L	CGGATTCATTTCT	.	141.0	51.0	147.0	0.0	.	10	.	.	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91498042	91498042	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	KIF20B	NM_016195	exon20	c.G3324A	p.A1108A	GAGAGCGCTTTCA	.	95.0	36.0	102.0	0.0	.	191	.	.	Atlas-SNP
DCLRE1A	9937	hgsc.bcm.edu	hg19	10	115602174	115602174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	DCLRE1A	NM_014881	exon6	c.G2593T	p.A865S	TTACAGCCTCAAA	.	98.0	38.0	92.0	0.0	.	80	.	.	Atlas-SNP
OR51S1	119692	hgsc.bcm.edu	hg19	11	4869943	4869943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	OR51S1	NM_001004758	exon1	c.C496T	p.P166S	GCAGGGGCAGATG	.	93.0	46.0	82.0	0.0	.	83	.	.	Atlas-SNP
OR4C15	81309	hgsc.bcm.edu	hg19	11	55322154	55322154	+	Silent	SNP	G	G	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	OR4C15,NS,neuroblastoma,0,1	OR4C15	NM_001001920	exon1	c.G372C	p.A124A	GGATGCGTGCTTC	.	62.0	5.0	41.0	0.0	.	145	.	.	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	hg19	11	56468353	56468353	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	.	NM_001013358	exon1	c.T490A	p.S164T	ACGTTTTCCTTTA	.	138.0	37.0	156.0	0.0	.	.	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103029663	103029663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	DYNC2H1	NM_001377	exon28	c.T4285A	p.F1429I	CCAAGATTTTATT	.	167.0	60.0	214.0	0.0	.	246	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121476237	121476237	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SORL1	NM_003105	exon35	c.A4905G	p.A1635A	CAAGGCACACAAC	.	138.0	70.0	136.0	0.0	.	218	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49443599	49443599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	MLL2_ENST00000301067,caecum,carcinoma,+2,2	MLL2	NM_003482	exon11	c.C3772T	p.R1258W	AGAGCCGTAGGGA	.	146.0	62.0	193.0	0.0	.	1173	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49448415	49448415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MLL2	NM_003482	exon3	c.C296A	p.P99H	CCCCCAGGGGACA	.	118.0	5.0	142.0	0.0	.	1173	.	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	hg19	13	58299287	58299287	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PCDH17	NM_001040429	exon4	c.G3339A	p.E1113E	CAGTGAGATGGGT	.	141.0	56.0	107.0	0.0	.	304	.	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	hg19	14	101350343	101350343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	RTL1	NM_001134888	exon1	c.C783A	p.S261R	CAGGGGGCTGTTT	.	52.0	27.0	67.0	0.0	.	120	.	.	Atlas-SNP
HAUS2	55142	hgsc.bcm.edu	hg19	15	42858992	42858992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	HAUS2	NM_018097	exon6	c.T686C	p.V229A	TTCATGTCCAAAC	.	97.0	4.0	110.0	0.0	.	12	.	.	Atlas-SNP
CDAN1	146059	hgsc.bcm.edu	hg19	15	43027807	43027807	+	Missense_Mutation	SNP	G	G	A	rs371090455		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	CDAN1	NM_138477	exon4	c.C844T	p.R282W	CTGTCCGGCTGGG	.	95.0	23.0	122.0	0.0	.	70	.	.	Atlas-SNP
AP2B1	163	hgsc.bcm.edu	hg19	17	33932839	33932839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	AP2B1	NM_001282	exon4	c.G259T	p.A87S	ATCATGGCTGTAA	.	90.0	34.0	79.0	0.0	.	70	.	.	Atlas-SNP
ONECUT2	9480	hgsc.bcm.edu	hg19	18	55103728	55103728	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ONECUT2	NM_004852	exon1	c.C780T	p.P260P	CAGCCCCAACTTC	.	68.0	29.0	61.0	0.0	.	42	.	.	Atlas-SNP
ZNF69	7620	hgsc.bcm.edu	hg19	19	12015547	12015547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	ZNF69	NM_021915	exon4	c.T293C	p.L98P	ACAGGCTGAACTT	.	121.0	11.0	149.0	0.0	.	27	.	.	Atlas-SNP
ZNF676	163223	hgsc.bcm.edu	hg19	19	22362861	22362861	+	Missense_Mutation	SNP	C	C	A	rs201300029	bycluster	TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	ZNF676,NS,carcinoma,0,3	ZNF676	NM_001001411	exon3	c.G1658T	p.R553I	TGAATTCTCTTGT	.	50.0	7.0	73.0	0.0	.	146	.	.	Atlas-SNP
SCRT2	85508	hgsc.bcm.edu	hg19	20	644968	644968	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	SCRT2	NM_033129	exon2	c.C271T	p.L91L	CCGACAGGCTCGA	.	30.0	16.0	39.0	0.0	.	16	.	.	Atlas-SNP
MED14	9282	hgsc.bcm.edu	hg19	X	40511063	40511063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	MED14	NM_004229	exon31	c.C4360A	p.P1454T	TCTATGGACGCCC	.	409.0	131.0	505.0	1.0	.	108	.	.	Atlas-SNP
PPP1R3F	89801	hgsc.bcm.edu	hg19	X	49138482	49138483	+	Frame_Shift_Ins	INS	-	-	TAGCCCCCACCTGA	novel		TCGA-ED-A7PY-01A-11D-A33Q-10	TCGA-ED-A7PY-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0e067207-764e-452a-9e8b-5cf53b052abc	f017e474-7862-4fff-8064-742a7c3c8e52	.	PPP1R3F	NM_033215	exon3	c.1099_1100insTAGCCCCCACCTGA	p.V367_A368delinsVAPTX	.	.	124.0	10.0	179.0	0.0	.	56	.	.	Atlas-Indel,Pindel
