Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MIB2	142678	hgsc.bcm.edu	hg19	1	1561031	1561031	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MIB2	NM_080875	exon8	c.A1315T	p.K439X	CTCACCAAGGTGC	.	76.0	41.0	71.0	0.0	.	62	.	.	Atlas-SNP
USP48	84196	hgsc.bcm.edu	hg19	1	22083087	22083087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	USP48	NM_001032730	exon3	c.A364T	p.S122C	AAGTGCTTGGACA	.	314.0	153.0	299.0	0.0	.	91	.	.	Atlas-SNP
C1orf63	57035	hgsc.bcm.edu	hg19	1	25571745	25571745	+	Silent	SNP	G	G	A	rs147790749		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C1orf63	NM_020317	exon3	c.C568T	p.L190L	TTCCTAGAGCTTT	.	65.0	20.0	75.0	0.0	.	17	.	G|1.000;A|0.000	Atlas-SNP
TMEM57	55219	hgsc.bcm.edu	hg19	1	25810611	25810611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TMEM57	NM_018202	exon7	c.G1159A	p.E387K	AGGCTGGAACAAG	.	267.0	110.0	265.0	1.0	.	72	.	.	Atlas-SNP
SLC30A2	7780	hgsc.bcm.edu	hg19	1	26365755	26365755	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC30A2	NM_001004434	exon8	c.A1015T	p.S339C	GGCGGCTGCTGGC	.	78.0	41.0	74.0	0.0	.	29	.	.	Atlas-SNP
COL16A1	1307	hgsc.bcm.edu	hg19	1	32157244	32157244	+	Splice_Site	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	COL16A1	NM_001856	exon19	c.1258-1G>T	.	CCGGCCCTGTGGG	.	193.0	87.0	227.0	1.0	.	137	.	.	Atlas-SNP
OSCP1	127700	hgsc.bcm.edu	hg19	1	36904373	36904373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OSCP1	NM_145047	exon2	c.A251T	p.Q84L	CTGGCCTGGTTCA	.	40.0	12.0	39.0	0.0	.	48	.	.	Atlas-SNP
EPHA10	284656	hgsc.bcm.edu	hg19	1	38230698	38230698	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	EPHA10	NM_001099439	exon1	c.T41A	p.L14H	CGGCAGAGGAAGA	.	40.0	24.0	47.0	0.0	.	120	.	.	Atlas-SNP
YBX1	4904	hgsc.bcm.edu	hg19	1	43162928	43162928	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	YBX1	NM_004559	exon6	c.C735T	p.F245F	ACGATTCCGCAGG	.	179.0	57.0	220.0	0.0	.	49	.	.	Atlas-SNP
FAM73A	374986	hgsc.bcm.edu	hg19	1	78325806	78325806	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FAM73A	NM_198549	exon11	c.C1270T	p.R424X	AAAGCACGAAAGG	.	99.0	35.0	120.0	0.0	.	56	.	.	Atlas-SNP
MCOLN2	255231	hgsc.bcm.edu	hg19	1	85403666	85403666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MCOLN2	NM_153259	exon10	c.A1210T	p.N404Y	TTACATTATATGC	.	369.0	152.0	377.0	0.0	.	60	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94548999	94548999	+	Splice_Site	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ABCA4	NM_000350	exon8	c.769-2A>T	.	GGAAGCTGTAATT	.	55.0	6.0	35.0	0.0	.	275	.	.	Atlas-SNP
LPPR5	0	hgsc.bcm.edu	hg19	1	99418684	99418684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_001010861	exon3	c.G563T	p.R188L	GTTTTTCGGGCTC	.	90.0	40.0	90.0	0.0	.	.	.	.	Atlas-SNP
OLFM3	118427	hgsc.bcm.edu	hg19	1	102270187	102270187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OLFM3	NM_058170	exon6	c.C984A	p.D328E	CATTAGGTCGATG	.	178.0	89.0	133.0	0.0	.	178	.	.	Atlas-SNP
NOTCH2	4853	hgsc.bcm.edu	hg19	1	120462971	120462971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NOTCH2	NM_024408	exon30	c.G5360A	p.R1787Q	CATGGCCGTCGAT	.	114.0	7.0	130.0	0.0	.	348	.	.	Atlas-SNP
GJA5	2702	hgsc.bcm.edu	hg19	1	147230478	147230478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GJA5	NM_005266	exon2	c.A869G	p.Q290R	TTTTGTTGGGAGG	.	192.0	27.0	110.0	0.0	.	64	.	.	Atlas-SNP
VPS45	11311	hgsc.bcm.edu	hg19	1	150054960	150054960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	VPS45	NM_007259	exon10	c.C1097T	p.A366V	CTAGTGCTCTCCA	.	178.0	121.0	115.0	0.0	.	47	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153907303	153907303	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	DENND4B_ENST00000361217,bladder,carcinoma,0,2	DENND4B	NM_014856	exon18	c.G2706A	p.Q902Q	CTGCTGCTGTTGC	.	69.0	5.0	40.0	0.0	.	210	.	.	Atlas-SNP
CRTC2	200186	hgsc.bcm.edu	hg19	1	153924016	153924016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	CRTC2,extremity,malignant_melanoma,0,1	CRTC2	NM_181715	exon11	c.C1124A	p.S375Y	AAGGAGGAGGCAG	.	55.0	37.0	27.0	0.0	.	58	.	.	Atlas-SNP
UBE2Q1	55585	hgsc.bcm.edu	hg19	1	154527989	154527989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	UBE2Q1	NM_017582	exon3	c.G452A	p.R151K	ATGATCCTCTTCA	.	99.0	21.0	70.0	0.0	.	35	.	.	Atlas-SNP
DCST1	149095	hgsc.bcm.edu	hg19	1	155023119	155023119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DCST1	NM_152494	exon17	c.C1896A	p.H632Q	CCTGCACCGCGGC	.	27.0	10.0	19.0	0.0	.	69	.	.	Atlas-SNP
AIM2	9447	hgsc.bcm.edu	hg19	1	159043068	159043068	+	Silent	SNP	A	A	G	rs145394745		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AIM2	NM_004833	exon2	c.T222C	p.Y74Y	AAGCATATAATTC	.	228.0	82.0	168.0	0.0	.	70	.	A|1.000;G|0.000	Atlas-SNP
NCSTN	23385	hgsc.bcm.edu	hg19	1	160323960	160323960	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NCSTN	NM_015331	exon11	c.T1232G	p.V411G	CTGCTGTCATCCT	.	145.0	39.0	131.0	0.0	.	64	.	.	Atlas-SNP
ATF6	22926	hgsc.bcm.edu	hg19	1	161832997	161832997	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ATF6	NM_007348	exon14	c.A1614T	p.S538S	GAACTCAGGGAGT	.	225.0	65.0	172.0	0.0	.	84	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176915125	176915125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ASTN1	NM_004319	exon13	c.T2186C	p.F729S	CCAAAGAACATCT	.	144.0	39.0	116.0	0.0	.	314	.	.	Atlas-SNP
RGS16	6004	hgsc.bcm.edu	hg19	1	182569551	182569551	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RGS16	NM_002928	exon5	c.T485A	p.L162Q	TCCATCAGGGTAC	.	73.0	21.0	75.0	0.0	.	25	.	.	Atlas-SNP
KCNK2	3776	hgsc.bcm.edu	hg19	1	215345508	215345508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KCNK2	NM_001017425	exon5	c.T805A	p.F269I	ATTGGATTTGGTG	.	158.0	22.0	107.0	0.0	.	135	.	.	Atlas-SNP
C1orf35	79169	hgsc.bcm.edu	hg19	1	228290668	228290668	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C1orf35	NM_024319	exon2	c.G177T	p.A59A	CGGGCCCGCGCAT	.	27.0	18.0	14.0	0.0	.	17	.	.	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	hg19	1	232144628	232144628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DISC1	NM_001164537	exon12	c.C2236A	p.L746M	GGAAGCCTGTCTG	.	145.0	22.0	102.0	0.0	.	207	.	.	Atlas-SNP
MTR	4548	hgsc.bcm.edu	hg19	1	237025590	237025590	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MTR	NM_000254	exon21	c.A2251T	p.M751L	CCTTTCATGGAAA	.	98.0	25.0	87.0	0.0	.	127	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245851297	245851297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KIF26B	NM_018012	exon12	c.G5012T	p.R1671M	TGGGCAGGGCGAC	.	73.0	38.0	64.0	0.0	.	343	.	.	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247013752	247013752	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AHCTF1	NM_015446	exon33	c.A5583T	p.P1861P	AACTGCTGGTTCC	.	317.0	175.0	214.0	0.0	.	187	.	.	Atlas-SNP
OR2L3	391192	hgsc.bcm.edu	hg19	1	248224411	248224411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR2L3	NM_001004687	exon1	c.T428C	p.M143T	TGCTGATGATAAC	.	117.0	29.0	67.0	0.0	.	97	.	.	Atlas-SNP
SNTG2	54221	hgsc.bcm.edu	hg19	2	1094065	1094065	+	Silent	SNP	C	C	T	rs369324271		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SNTG2	NM_018968	exon4	c.C294T	p.V98V	CCCTGTCGTCATA	.	156.0	36.0	180.0	0.0	.	125	.	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	hg19	2	1926446	1926446	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MYT1L	NM_015025	exon10	c.G1095A	p.E365E	GAAGTCCTCTTCT	.	69.0	17.0	96.0	0.0	.	241	.	.	Atlas-SNP
SMC6	79677	hgsc.bcm.edu	hg19	2	17896176	17896176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SMC6	NM_001142286	exon16	c.C1682T	p.P561L	ATTATCGGTGGCC	.	106.0	9.0	100.0	0.0	.	102	.	.	Atlas-SNP
SLC30A3	7781	hgsc.bcm.edu	hg19	2	27480785	27480785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC30A3	NM_003459	exon4	c.G566T	p.C189F	TTGGCACAGACTG	.	127.0	33.0	137.0	0.0	.	39	.	.	Atlas-SNP
SPAST	6683	hgsc.bcm.edu	hg19	2	32341205	32341205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SPAST	NM_014946	exon7	c.T1022A	p.F341Y	TTAAATTTGATGA	.	80.0	29.0	95.0	0.0	.	61	.	.	Atlas-SNP
STON1-GTF2A1L	286749	hgsc.bcm.edu	hg19	2	48848041	48848041	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	STON1-GTF2A1L	NM_001198594	exon3	c.C2185G	p.L729V	CGGAATCTATTTG	.	52.0	22.0	85.0	0.0	.	180	.	.	Atlas-SNP
CNRIP1	25927	hgsc.bcm.edu	hg19	2	68544310	68544310	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CNRIP1	NM_001111101	exon2	c.A309T	p.Q103H	GATGGGTTGCCGT	.	111.0	66.0	188.0	0.0	.	45	.	.	Atlas-SNP
ZC3H6	376940	hgsc.bcm.edu	hg19	2	113067546	113067546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZC3H6	NM_198581	exon4	c.A421T	p.S141C	GAGTACAGCACCT	.	252.0	83.0	278.0	0.0	.	93	.	.	Atlas-SNP
CSRNP3	80034	hgsc.bcm.edu	hg19	2	166535809	166535809	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CSRNP3	NM_001172173	exon7	c.T1304A	p.L435Q	CAACTCTGTATTA	.	56.0	32.0	103.0	0.0	.	73	.	.	Atlas-SNP
SLC25A12	8604	hgsc.bcm.edu	hg19	2	172666177	172666177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC25A12	NM_003705	exon13	c.A1244T	p.D415V	AATTTGTCCCGAA	.	165.0	33.0	213.0	0.0	.	59	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179407911	179407911	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTN	NM_001267550	exon347	c.T96789A	p.T32263T	AGTAACAGTGTGC	.	73.0	41.0	76.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179594820	179594820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTN	NM_001267550	exon62	c.G18307A	p.E6103K	CCAGACCTTTTAC	.	34.0	12.0	50.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179611653	179611653	+	Silent	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTN	NM_133379	exon46	c.T15474G	p.A5158A	TTCATAAGCTGAA	.	78.0	26.0	80.0	0.0	.	18412	.	.	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	hg19	2	179825979	179825979	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CCDC141	NM_173648	exon5	c.A758T	p.Q253L	TCCCACTGACATA	.	100.0	60.0	122.0	0.0	.	362	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	hg19	2	189861938	189861938	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	COL3A1	NM_000090	exon25	c.C1809A	p.G603G	ACCTGGCCCTCAG	.	84.0	39.0	121.0	0.0	.	292	.	.	Atlas-SNP
BMPR2	659	hgsc.bcm.edu	hg19	2	203379609	203379609	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BMPR2	NM_001204	exon5	c.530-2A>T	.	TCTTATAGGAGAC	.	60.0	19.0	59.0	0.0	.	142	.	.	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	hg19	2	207429764	207429764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ADAM23	NM_003812	exon14	c.T1366A	p.W456R	GAATCCTGGGGTG	.	49.0	23.0	73.0	0.0	.	239	.	.	Atlas-SNP
STK36	27148	hgsc.bcm.edu	hg19	2	219553490	219553490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	STK36	NM_015690	exon12	c.C1451T	p.S484F	TTCTCTCCAGCTG	.	126.0	40.0	134.0	0.0	.	111	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220341676	220341676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SPEG	NM_005876	exon19	c.A4532T	p.K1511I	AGGGAAAACCACT	.	38.0	10.0	70.0	0.0	.	272	.	.	Atlas-SNP
INHA	3623	hgsc.bcm.edu	hg19	2	220439764	220439764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	INHA	NM_002191	exon2	c.C617A	p.S206X	CCTGCTCAGCCCG	.	38.0	14.0	66.0	0.0	.	30	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225702538	225702538	+	Missense_Mutation	SNP	C	C	G	rs369073678	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DOCK10	NM_014689	exon25	c.G2791C	p.D931H	CAATGTCGGTCAG	.	58.0	22.0	57.0	0.0	.	308	.	.	Atlas-SNP
B3GNT7	93010	hgsc.bcm.edu	hg19	2	232263636	232263636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	B3GNT7	NM_145236	exon2	c.A1206T	p.X402C	GCTCTGACCCCAG	.	8.0	6.0	11.0	0.0	.	38	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	CTNNB1,gallbladder,other,+1,128	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	114.0	106.0	182.0	0.0	.	4904	.	.	Atlas-SNP
CACNA2D2	9254	hgsc.bcm.edu	hg19	3	50418547	50418547	+	Silent	SNP	G	G	A	rs56287038	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CACNA2D2	NM_001174051	exon7	c.C663T	p.I221I	ATTGAGGATGACA	.	56.0	18.0	81.0	0.0	.	82	.	G|0.887;T|0.113	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	hg19	3	97868527	97868527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	OR5H14,NS,carcinoma,0,1	OR5H14	NM_001005514	exon1	c.C298A	p.Q100K	AAGATACAGTTGT	.	182.0	26.0	165.0	0.0	.	56	.	.	Atlas-SNP
MORC1	27136	hgsc.bcm.edu	hg19	3	108698446	108698446	+	Missense_Mutation	SNP	C	C	A	rs201675482	by1000genomes;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MORC1	NM_014429	exon24	c.G2393T	p.G798V	CAACTGCCACTCA	.	102.0	24.0	124.0	0.0	.	211	.	C|1.000;T|0.000	Atlas-SNP
CD96	10225	hgsc.bcm.edu	hg19	3	111342600	111342600	+	Splice_Site	SNP	G	G	T	rs77738677	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CD96	NM_005816	exon9	c.1181-1G>T	.	AAAATAGGATATC	.	304.0	108.0	284.0	0.0	.	75	.	G|0.995;A|0.005	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124437851	124437851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KALRN	NM_001024660	exon60	c.C8495T	p.S2832L	AGATCTCGGGTCA	.	116.0	18.0	102.0	0.0	.	556	.	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124437876	124437876	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KALRN	NM_001024660	exon60	c.G8520A	p.L2840L	CCACCTGCTGGGG	.	119.0	20.0	97.0	0.0	.	556	.	.	Atlas-SNP
SLC12A8	84561	hgsc.bcm.edu	hg19	3	124909320	124909320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	SLC12A8_ENST00000393469,NS,carcinoma,0,1	SLC12A8	NM_024628	exon3	c.A97T	p.M33L	CCCACATGAACAG	.	334.0	60.0	304.0	0.0	.	81	.	.	Atlas-SNP
NEK11	79858	hgsc.bcm.edu	hg19	3	130884346	130884346	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NEK11	NM_024800	exon12	c.A1159T	p.S387C	CAGCTGAGTGTTG	.	186.0	98.0	171.0	0.0	.	76	.	.	Atlas-SNP
PLSCR4	57088	hgsc.bcm.edu	hg19	3	145924525	145924525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PLSCR4	NM_020353	exon4	c.C142T	p.P48S	TAGGTGGAGGGAC	.	124.0	17.0	108.0	0.0	.	44	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153842229	153842229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	SGEF,colon,carcinoma,0,3	ARHGEF26	NM_001251962	exon3	c.G1114C	p.D372H	ACATTTGATGGGG	.	50.0	28.0	48.0	0.0	.	158	.	.	Atlas-SNP
TTC14	151613	hgsc.bcm.edu	hg19	3	180322340	180322340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TTC14	NM_001042601	exon5	c.C646A	p.L216I	CCACACCTATCTG	.	167.0	41.0	153.0	0.0	.	112	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195507956	195507956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MUC4	NM_018406	exon2	c.A10495T	p.T3499S	CACCTGTGGATGC	.	195.0	33.0	187.0	0.0	.	1505	.	.	Atlas-SNP
POLN	353497	hgsc.bcm.edu	hg19	4	2209958	2209958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	POLN	NM_181808	exon3	c.A470C	p.K157T	ATATGTTTTCTTT	.	143.0	21.0	82.0	0.0	.	82	.	.	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	hg19	4	3427240	3427240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RGS12	NM_002926	exon14	c.A3284G	p.D1095G	GTCTGGACGGACA	.	148.0	35.0	131.0	0.0	.	128	.	.	Atlas-SNP
UCHL1	7345	hgsc.bcm.edu	hg19	4	41266155	41266155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	UCHL1	NM_004181	exon8	c.A562T	p.S188C	GGCGCCAGTTCAG	.	97.0	53.0	69.0	0.0	.	19	.	.	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	hg19	4	57873096	57873096	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	POLR2B	NM_000938	exon10	c.A1332T	p.L444L	TGGCCTAAAATAC	.	461.0	111.0	263.0	0.0	.	108	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62862048	62862048	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LPHN3	NM_015236	exon17	c.T3072C	p.F1024F	GAGTTTTATAGGA	.	65.0	50.0	132.0	0.0	.	800	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87692580	87692580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PTPN13	NM_080685	exon31	c.T5075A	p.V1692E	ACATGGTATCACA	.	100.0	82.0	223.0	0.0	.	203	.	.	Atlas-SNP
INTU	27152	hgsc.bcm.edu	hg19	4	128628111	128628111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	INTU	NM_015693	exon12	c.G2258A	p.G753E	AAAGTGGGACCTT	.	39.0	31.0	77.0	0.0	.	92	.	.	Atlas-SNP
SH3D19	152503	hgsc.bcm.edu	hg19	4	152080413	152080413	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SH3D19	NM_001128923	exon9	c.T894A	p.N298K	CTCAACATTACTG	.	68.0	21.0	96.0	0.0	.	54	.	.	Atlas-SNP
IRX4	50805	hgsc.bcm.edu	hg19	5	1882077	1882077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IRX4	NM_016358	exon2	c.T142A	p.Y48N	GGCAGTAGACCGG	.	87.0	59.0	76.0	0.0	.	45	.	.	Atlas-SNP
ERBB2IP	55914	hgsc.bcm.edu	hg19	5	65322213	65322213	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ERBB2IP	NM_001253701	exon13	c.A1104C	p.Q368H	TATGCAAAAATTA	.	88.0	18.0	82.0	0.0	.	120	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90070014	90070014	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GPR98	NM_032119	exon60	c.G12297A	p.Q4099Q	GTCCCAGAAGACC	.	51.0	11.0	65.0	0.0	.	605	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128977564	128977564	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ADAMTS19	NM_133638	exon11	c.A1765T	p.T589S	ATTTGCACAGGAT	.	79.0	20.0	86.0	0.0	.	216	.	.	Atlas-SNP
CXXC5	51523	hgsc.bcm.edu	hg19	5	139060694	139060694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CXXC5	NM_016463	exon2	c.G586A	p.V196M	GAGGCTGTGGCAG	.	55.0	13.0	72.0	0.0	.	27	.	.	Atlas-SNP
PCDHB13	56123	hgsc.bcm.edu	hg19	5	140595369	140595369	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	PCDHB13,colon,carcinoma,0,2	PCDHB13	NM_018933	exon1	c.G1674A	p.S558S	CAACTCGCCCTTC	.	30.0	17.0	25.0	0.0	.	142	.	.	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153035418	153035418	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GRIA1	NM_001258021	exon5	c.A715T	p.I239F	CACTACATTCTTG	.	75.0	22.0	66.0	0.0	.	321	.	.	Atlas-SNP
TIMD4	91937	hgsc.bcm.edu	hg19	5	156381475	156381475	+	Silent	SNP	A	A	T	rs371298031	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TIMD4	NM_138379	exon2	c.T351A	p.P117P	CCAGCCAGGCACT	.	68.0	45.0	72.0	0.0	.	94	.	.	Atlas-SNP
NIPAL4	348938	hgsc.bcm.edu	hg19	5	156899882	156899882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NIPAL4	NM_001099287	exon6	c.G1315A	p.D439N	CTGGAAGACAAGA	.	64.0	43.0	74.0	0.0	.	48	.	.	Atlas-SNP
C5orf54	63920	hgsc.bcm.edu	hg19	5	159821530	159821530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C5orf54	NM_022090	exon2	c.G968C	p.S323T	AGGACACTATATT	.	81.0	18.0	88.0	0.0	.	46	.	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176520211	176520211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FGFR4	NM_002011	exon9	c.C1130T	p.S377F	CGGGCTCCCTGGC	.	85.0	25.0	109.0	0.0	.	174	.	.	Atlas-SNP
ZNF454	285676	hgsc.bcm.edu	hg19	5	178392529	178392529	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF454	NM_001178089	exon5	c.A1124T	p.Q375L	AACATCAGAGAAT	.	98.0	34.0	101.0	0.0	.	99	.	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12124094	12124094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HIVEP1	NM_002114	exon4	c.G4066T	p.V1356F	CTGAATGTTCCTG	.	158.0	24.0	86.0	0.0	.	242	.	.	Atlas-SNP
POM121L2	94026	hgsc.bcm.edu	hg19	6	27279067	27279067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	POM121L2	NM_033482	exon1	c.C883A	p.P295T	AGGAAGGCCGATG	.	117.0	63.0	92.0	0.0	.	61	.	.	Atlas-SNP
OR12D3	81797	hgsc.bcm.edu	hg19	6	29342331	29342331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR12D3	NM_030959	exon1	c.T734C	p.M245T	ACCACCATAAAAT	.	173.0	16.0	137.0	0.0	.	55	.	.	Atlas-SNP
RNF39	80352	hgsc.bcm.edu	hg19	6	30039406	30039406	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RNF39	NM_025236	exon4	c.A745C	p.S249R	GTACGCTGCGGCG	.	20.0	8.0	2.0	0.0	.	27	.	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30918786	30918786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DPCR1	NM_080870	exon2	c.G2545T	p.A849S	AGCACAGCCAATG	.	94.0	45.0	45.0	0.0	.	99	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32015532	32015532	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TNXB	NM_019105	exon30	c.A10297T	p.I3433F	CAGAGATGGGGCC	.	76.0	22.0	45.0	0.0	.	553	.	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	hg19	6	40400714	40400714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LRFN2	NM_020737	exon2	c.C139A	p.P47T	CAGGGGGTACAAA	.	146.0	63.0	91.0	0.0	.	133	.	.	Atlas-SNP
TREML1	340205	hgsc.bcm.edu	hg19	6	41121500	41121500	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TREML1	NM_178174	exon2	c.C372T	p.P124P	ACCTGGGGGCAGT	.	150.0	20.0	85.0	0.0	.	20	.	.	Atlas-SNP
CAPN11	11131	hgsc.bcm.edu	hg19	6	44149032	44149032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CAPN11	NM_007058	exon19	c.T1913A	p.L638Q	AGATCCTGTGGAA	.	95.0	52.0	63.0	0.0	.	66	.	.	Atlas-SNP
GSTA4	2941	hgsc.bcm.edu	hg19	6	52849299	52849299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GSTA4	NM_001512	exon5	c.A377T	p.Q126L	GCCTTCTGGGCCA	.	156.0	65.0	70.0	0.0	.	20	.	.	Atlas-SNP
KHDRBS2	202559	hgsc.bcm.edu	hg19	6	62407112	62407112	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KHDRBS2	NM_152688	exon8	c.T940A	p.Y314N	TGTCATAGGCATC	.	94.0	43.0	53.0	0.0	.	103	.	.	Atlas-SNP
DDX43	55510	hgsc.bcm.edu	hg19	6	74118988	74118988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DDX43	NM_018665	exon10	c.C1197A	p.D399E	AGCAGACAAGATG	.	77.0	17.0	90.0	0.0	.	69	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75887629	75887629	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	COL12A1	NM_004370	exon12	c.A2187T	p.L729L	CACCTTTAGGTTT	.	36.0	33.0	38.0	0.0	.	385	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84417640	84417640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	SNAP91_ENST00000439399,right_lower_lobe,carcinoma,0,2	SNAP91	NM_001242794	exon2	c.G7T	p.G3C	TTTGGCCCGACAT	.	42.0	41.0	25.0	0.0	.	199	.	.	Atlas-SNP
CNR1	1268	hgsc.bcm.edu	hg19	6	88854869	88854869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CNR1	NM_001160258	exon4	c.G125A	p.G42E	AAGTACCCTAATT	.	102.0	90.0	87.0	0.0	.	91	.	.	Atlas-SNP
TCF21	6943	hgsc.bcm.edu	hg19	6	134210900	134210900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TCF21	NM_003206	exon1	c.G365A	p.R122K	CGCTCAGGCTGGC	.	155.0	36.0	221.0	0.0	.	30	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136597179	136597179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BCLAF1	NM_014739	exon5	c.A1484T	p.Q495L	GGTGACTGAGTTT	.	132.0	42.0	113.0	0.0	.	203	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151151983	151151983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PLEKHG1	NM_001029884	exon16	c.A1736G	p.D579G	GTGAAGATAGCAC	.	60.0	50.0	101.0	0.0	.	97	.	.	Atlas-SNP
TTLL2	83887	hgsc.bcm.edu	hg19	6	167754699	167754699	+	Silent	SNP	C	C	A	rs201555411	by1000genomes;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	TTLL2,NS,carcinoma,0,1	TTLL2	NM_031949	exon3	c.C1311A	p.I437I	CAACATCGACGCT	.	56.0	54.0	66.0	0.0	.	82	.	C|1.000;T|0.000	Atlas-SNP
PHF10	55274	hgsc.bcm.edu	hg19	6	170112536	170112536	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PHF10	NM_018288	exon8	c.A903T	p.S301S	ATCATCTGAATCA	.	171.0	147.0	258.0	0.0	.	76	.	.	Atlas-SNP
FTSJ2	29960	hgsc.bcm.edu	hg19	7	2279075	2279075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FTSJ2	NM_013393	exon2	c.G276C	p.Q92H	GACCTTCTGCACC	.	38.0	20.0	38.0	0.0	.	22	.	.	Atlas-SNP
USP42	84132	hgsc.bcm.edu	hg19	7	6189834	6189834	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	USP42	NM_032172	exon13	c.G2007A	p.P669P	TGACCCGAAAGAA	.	50.0	31.0	48.0	0.0	.	138	.	.	Atlas-SNP
PHF14	9678	hgsc.bcm.edu	hg19	7	11030469	11030469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PHF14	NM_014660	exon4	c.A1040G	p.H347R	CAGTCCATGAAGG	.	122.0	50.0	99.0	0.0	.	90	.	.	Atlas-SNP
IGF2BP3	10643	hgsc.bcm.edu	hg19	7	23391021	23391021	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IGF2BP3	NM_006547	exon6	c.T586A	p.L196M	GAGGCAAATCACA	.	69.0	35.0	67.0	0.0	.	71	.	.	Atlas-SNP
AVL9	23080	hgsc.bcm.edu	hg19	7	32599056	32599056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AVL9	NM_015060	exon10	c.C1195A	p.P399T	GGCATGCCCCTGG	.	128.0	32.0	126.0	0.0	.	66	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42007259	42007259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GLI3	NM_000168	exon14	c.T2366A	p.M789K	GGAAACATTCCAT	.	144.0	65.0	139.0	0.0	.	312	.	.	Atlas-SNP
HECW1	23072	hgsc.bcm.edu	hg19	7	43484963	43484963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HECW1	NM_015052	exon11	c.C2192A	p.T731K	AGAGCACGGTCTT	.	65.0	29.0	93.0	0.0	.	540	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48278844	48278844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ABCA13	NM_152701	exon9	c.A904T	p.T302S	ATTCCCACAGACA	.	50.0	21.0	53.0	0.0	.	1192	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100676441	100676441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MUC17	NM_001040105	exon3	c.G1744A	p.V582M	AGGCTGGTGGTCA	.	69.0	38.0	77.0	0.0	.	804	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100684989	100684989	+	Missense_Mutation	SNP	C	C	T	rs190089107	bycluster;by1000genomes;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MUC17	NM_001040105	exon3	c.C10292T	p.T3431I	TGGTGACCACTTC	.	99.0	47.0	97.0	0.0	.	804	.	C|1.000;G|0.000	Atlas-SNP
RBM28	55131	hgsc.bcm.edu	hg19	7	127978350	127978350	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RBM28	NM_018077	exon5	c.A495C	p.L165L	TGCTTCTAGGAGG	.	103.0	43.0	106.0	0.0	.	71	.	.	Atlas-SNP
CPA4	51200	hgsc.bcm.edu	hg19	7	129951962	129951962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CPA4	NM_016352	exon10	c.T1078A	p.Y360N	ACTGTCTGTAAGT	.	51.0	25.0	57.0	0.0	.	47	.	.	Atlas-SNP
HIPK2	28996	hgsc.bcm.edu	hg19	7	139416674	139416674	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HIPK2	NM_022740	exon2	c.A160T	p.S54C	TCTTGCTCTGGCT	.	122.0	66.0	135.0	0.0	.	192	.	.	Atlas-SNP
HIPK2	28996	hgsc.bcm.edu	hg19	7	139416675	139416675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HIPK2	NM_022740	exon2	c.G159T	p.Q53H	CTTGCTCTGGCTA	.	124.0	67.0	135.0	0.0	.	192	.	.	Atlas-SNP
MRPS33	51650	hgsc.bcm.edu	hg19	7	140710338	140710338	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MRPS33	NM_016071	exon2	c.A96G	p.K32K	CACCACTTTCATA	.	156.0	57.0	161.0	0.0	.	8	.	.	Atlas-SNP
CNPY1	285888	hgsc.bcm.edu	hg19	7	155301641	155301641	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CNPY1	NM_001103176	exon2	c.A92T	p.E31V	TTAAATTCTTGGT	.	107.0	42.0	124.0	0.0	.	20	.	.	Atlas-SNP
MNX1	3110	hgsc.bcm.edu	hg19	7	156802352	156802352	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MNX1	NM_005515	exon2	c.691+2T>A	.	GTACTCACAGTTG	.	55.0	24.0	69.0	0.0	.	17	.	.	Atlas-SNP
MSR1	4481	hgsc.bcm.edu	hg19	8	16035438	16035438	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MSR1	NM_138715	exon2	c.T60A	p.S20S	TTTCACAGATTCG	.	41.0	36.0	77.0	0.0	.	140	.	.	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30705371	30705371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TEX15	NM_031271	exon1	c.T1163C	p.I388T	TGGGGTATGTCTT	.	60.0	51.0	124.0	0.0	.	350	.	.	Atlas-SNP
RGS20	8601	hgsc.bcm.edu	hg19	8	54792132	54792132	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RGS20	NM_170587	exon2	c.C480T	p.D160D	AGAAGACGCCACC	.	95.0	20.0	90.0	0.0	.	51	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69143582	69143582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PREX2	NM_024870	exon40	c.G4790T	p.C1597F	AGCTGTGCGAGCC	.	92.0	34.0	70.0	0.0	.	614	.	.	Atlas-SNP
TERF1	7013	hgsc.bcm.edu	hg19	8	73932979	73932979	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TERF1	NM_017489	exon3	c.G476C	p.G159A	TTTGGGGTTCAAT	.	356.0	135.0	266.0	0.0	.	48	.	.	Atlas-SNP
ZFAND1	79752	hgsc.bcm.edu	hg19	8	82615054	82615054	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZFAND1	NM_024699	exon8	c.A683G	p.D228G	GTATGATCCAAGG	.	202.0	25.0	182.0	0.0	.	29	.	.	Atlas-SNP
TP53INP1	94241	hgsc.bcm.edu	hg19	8	95952315	95952315	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TP53INP1	NM_001135733	exon3	c.C246A	p.S82S	AAAGCAGGAATCA	.	165.0	23.0	161.0	0.0	.	22	.	.	Atlas-SNP
OSR2	116039	hgsc.bcm.edu	hg19	8	99963924	99963924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OSR2	NM_001142462	exon4	c.T934G	p.F312V	CAGGACTTCTAGA	.	69.0	29.0	49.0	0.0	.	56	.	.	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	hg19	8	142151309	142151309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DENND3	NM_014957	exon4	c.A269G	p.Y90C	ATGAGTACTGTTT	.	78.0	23.0	61.0	0.0	.	127	.	.	Atlas-SNP
ZNF16	7564	hgsc.bcm.edu	hg19	8	146157778	146157778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF16	NM_006958	exon3	c.A395T	p.Q132L	CCCTCCTGGGAGA	.	91.0	46.0	68.0	0.0	.	80	.	.	Atlas-SNP
VLDLR	7436	hgsc.bcm.edu	hg19	9	2641451	2641451	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	VLDLR	NM_003383	exon4	c.T400A	p.C134S	TGGAGATGTGATG	.	60.0	50.0	127.0	0.0	.	68	.	.	Atlas-SNP
GABBR2	9568	hgsc.bcm.edu	hg19	9	101068512	101068512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GABBR2	NM_005458	exon15	c.C2120T	p.A707V	ACAGCGGCCCCGA	.	77.0	69.0	186.0	0.0	.	126	.	.	Atlas-SNP
AKNA	80709	hgsc.bcm.edu	hg19	9	117139221	117139221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AKNA	NM_030767	exon3	c.G866A	p.C289Y	TGAGGGCAGAAGA	.	30.0	26.0	91.0	0.0	.	119	.	.	Atlas-SNP
URM1	81605	hgsc.bcm.edu	hg19	9	131133678	131133678	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	URM1	NM_001265582	exon1	c.G19C	p.V7L	TTGTCAGTGGAGG	.	40.0	33.0	90.0	0.0	.	19	.	.	Atlas-SNP
NTNG2	84628	hgsc.bcm.edu	hg19	9	135116364	135116364	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NTNG2	NM_032536	exon7	c.C1290A	p.R430R	GTGCCGCGAGGGC	.	23.0	22.0	47.0	0.0	.	66	.	.	Atlas-SNP
DHTKD1	55526	hgsc.bcm.edu	hg19	10	12126675	12126675	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DHTKD1	NM_018706	exon3	c.G447T	p.R149R	CAAGCGGTTTGAG	.	132.0	63.0	139.0	0.0	.	104	.	.	Atlas-SNP
MKX	283078	hgsc.bcm.edu	hg19	10	28023482	28023482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MKX	NM_001242702	exon5	c.A741T	p.Q247H	GTTTCTTTGCCTT	.	119.0	63.0	142.0	0.0	.	43	.	.	Atlas-SNP
EPC1	80314	hgsc.bcm.edu	hg19	10	32560684	32560684	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	EPC1	NM_025209	exon14	c.A2236T	p.T746S	GAGTTGTTGCAGA	.	139.0	71.0	147.0	0.0	.	74	.	.	Atlas-SNP
FRMPD2	143162	hgsc.bcm.edu	hg19	10	49392912	49392912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FRMPD2	NM_001018071	exon19	c.A2372T	p.N791I	CCCTCATTAATGA	.	78.0	28.0	86.0	0.0	.	157	.	.	Atlas-SNP
VSTM4	196740	hgsc.bcm.edu	hg19	10	50256624	50256624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	VSTM4	NM_001031746	exon6	c.G674T	p.G225V	GTCTCCCCTGAGC	.	79.0	12.0	72.0	0.0	.	83	.	.	Atlas-SNP
CLRN3	119467	hgsc.bcm.edu	hg19	10	129681969	129681969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CLRN3	NM_152311	exon2	c.G400T	p.G134W	CGAGCCCGTTCCA	.	89.0	43.0	120.0	0.0	.	27	.	.	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	hg19	10	134942775	134942775	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GPR123	NM_001083909	exon7	c.C1443T	p.V481V	CATGGTCACCCAG	.	49.0	22.0	58.0	0.0	.	118	.	.	Atlas-SNP
HBE1	3046	hgsc.bcm.edu	hg19	11	5291051	5291051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HBE1	NM_005330	exon1	c.G70T	p.A24S	CTCCAGCCTCTTC	.	61.0	11.0	91.0	0.0	.	42	.	.	Atlas-SNP
SWAP70	23075	hgsc.bcm.edu	hg19	11	9750888	9750888	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SWAP70	NM_015055	exon6	c.790-2A>T	.	TGTTTTAGTCCTT	.	115.0	36.0	145.0	0.0	.	40	.	.	Atlas-SNP
SBF2	81846	hgsc.bcm.edu	hg19	11	9853870	9853870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SBF2	NM_030962	exon27	c.T3553C	p.W1185R	TCTTCCAACATAC	.	98.0	24.0	120.0	0.0	.	146	.	.	Atlas-SNP
RASSF10	644943	hgsc.bcm.edu	hg19	11	13031125	13031125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_001080521	exon1	c.T2A	p.M1K	GCGCCATGGATCC	.	39.0	25.0	37.0	0.0	.	.	.	.	Atlas-SNP
CD44	960	hgsc.bcm.edu	hg19	11	35236397	35236397	+	Splice_Site	SNP	A	A	T	rs200427375	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CD44	NM_000610	exon15	c.1811-2A>T	.	CATTACAGGAGAC	.	57.0	36.0	92.0	0.0	.	48	.	.	Atlas-SNP
OR8H2	390151	hgsc.bcm.edu	hg19	11	55873254	55873254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR8H2	NM_001005200	exon1	c.T736G	p.L246V	CATCTCTTGGGAG	.	85.0	24.0	113.0	0.0	.	117	.	.	Atlas-SNP
OR8H1	219469	hgsc.bcm.edu	hg19	11	56058142	56058142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR8H1	NM_001005199	exon1	c.G397A	p.V133I	TAATAACTGGGTA	.	86.0	21.0	124.0	0.0	.	89	.	.	Atlas-SNP
CLP1	10978	hgsc.bcm.edu	hg19	11	57427466	57427466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CLP1	NM_006831	exon2	c.A518T	p.D173V	CTGCAGATGTCGA	.	56.0	30.0	87.0	0.0	.	40	.	.	Atlas-SNP
SLC22A9	114571	hgsc.bcm.edu	hg19	11	63176219	63176219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC22A9	NM_080866	exon9	c.T1469C	p.L490P	TGATCCTAAGTGT	.	87.0	29.0	102.0	0.0	.	77	.	.	Atlas-SNP
SLC22A9	114571	hgsc.bcm.edu	hg19	11	63177289	63177289	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC22A9	NM_080866	exon10	c.A1617T	p.R539S	CCCCAGAGAACCA	.	61.0	41.0	72.0	0.0	.	77	.	.	Atlas-SNP
C11orf84	144097	hgsc.bcm.edu	hg19	11	63585819	63585819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C11orf84	NM_138471	exon3	c.C589T	p.R197C	GGACTCCGCCCCC	.	31.0	19.0	52.0	0.0	.	33	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92534161	92534161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FAT3	NM_001008781	exon9	c.T7982C	p.V2661A	GGATGGTCACAAA	.	83.0	51.0	121.0	0.0	.	1822	.	.	Atlas-SNP
MMP7	4316	hgsc.bcm.edu	hg19	11	102398359	102398359	+	Missense_Mutation	SNP	C	C	A	rs138303399	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MMP7	NM_002423	exon3	c.G380T	p.R127L	ACTAATCGATCCA	.	68.0	20.0	93.0	0.0	.	27	.	C|1.000;T|0.000	Atlas-SNP
GUCY1A2	2977	hgsc.bcm.edu	hg19	11	106810255	106810255	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GUCY1A2	NM_000855	exon4	c.G1137A	p.L379L	TCGCAGCAGGACC	.	123.0	35.0	189.0	0.0	.	180	.	.	Atlas-SNP
DRD2	1813	hgsc.bcm.edu	hg19	11	113281601	113281601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DRD2	NM_000795	exon8	c.A1180G	p.I394V	TCAGGATGTGTGT	.	104.0	65.0	149.0	0.0	.	98	.	.	Atlas-SNP
OR8D1	283159	hgsc.bcm.edu	hg19	11	124180322	124180322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR8D1	NM_001002917	exon1	c.T341A	p.L114H	GTCAGGAGGTAAC	.	118.0	83.0	117.0	0.0	.	53	.	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2717739	2717739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CACNA1C	NM_199460	exon28	c.T3479A	p.V1160E	ACCGTGTGGAGAT	.	115.0	18.0	92.0	0.0	.	1023	.	.	Atlas-SNP
TULP3	7289	hgsc.bcm.edu	hg19	12	3047308	3047308	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TULP3	NM_003324	exon10	c.A1052T	p.Q351L	GGTGGCAGAACAG	.	124.0	93.0	104.0	0.0	.	45	.	.	Atlas-SNP
KCNA5	3741	hgsc.bcm.edu	hg19	12	5153590	5153590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KCNA5	NM_002234	exon1	c.C277T	p.P93S	CCGCCTCCCGAGG	.	30.0	22.0	31.0	0.0	.	138	.	.	Atlas-SNP
CLEC2B	9976	hgsc.bcm.edu	hg19	12	10005943	10005943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CLEC2B	NM_005127	exon5	c.T406C	p.C136R	TGTAACATCTAGC	.	79.0	60.0	77.0	0.0	.	19	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43826449	43826449	+	Silent	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ADAMTS20	NM_025003	exon20	c.T2886C	p.H962H	GTTACCATGGCAT	.	141.0	94.0	120.0	0.0	.	635	.	.	Atlas-SNP
HDAC7	51564	hgsc.bcm.edu	hg19	12	48191236	48191236	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HDAC7	NM_001098416	exon6	c.A508C	p.S170R	AGCTGCTGAGCAT	.	72.0	54.0	68.0	0.0	.	71	.	.	Atlas-SNP
LARP4	113251	hgsc.bcm.edu	hg19	12	50869368	50869368	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LARP4	NM_052879	exon16	c.A1896T	p.S632S	ATCTTCAGTTCTT	.	175.0	45.0	152.0	0.0	.	58	.	.	Atlas-SNP
STAT6	6778	hgsc.bcm.edu	hg19	12	57498539	57498539	+	Silent	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	STAT6	NM_001178079	exon10	c.G1059C	p.G353G	GCAGTTCCCAGGA	.	71.0	19.0	69.0	0.0	.	69	.	.	Atlas-SNP
C12orf56	115749	hgsc.bcm.edu	hg19	12	64724758	64724758	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C12orf56	NM_001170633	exon3	c.T470A	p.L157Q	TCTTTCAGACTTC	.	70.0	57.0	65.0	0.0	.	42	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101693811	101693811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	UTP20	NM_014503	exon14	c.G1647T	p.M549I	CTTCATGACTGTT	.	198.0	180.0	286.0	1.0	.	222	.	.	Atlas-SNP
CCDC53	51019	hgsc.bcm.edu	hg19	12	102419817	102419817	+	Splice_Site	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CCDC53	NM_016053	exon7	c.436-1G>C	.	TACACCCTAAGCA	.	64.0	15.0	63.0	0.0	.	14	.	.	Atlas-SNP
VSIG10	54621	hgsc.bcm.edu	hg19	12	118533474	118533474	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	VSIG10	NM_019086	exon2	c.A225T	p.P75P	CTCAGCTGGCCGG	.	139.0	132.0	137.0	0.0	.	41	.	.	Atlas-SNP
WASF3	10810	hgsc.bcm.edu	hg19	13	27239184	27239184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	WASF3	NM_006646	exon4	c.A153G	p.I51M	AGACATATTTGGT	.	41.0	15.0	71.0	0.0	.	68	.	.	Atlas-SNP
FLT1	2321	hgsc.bcm.edu	hg19	13	29001941	29001941	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FLT1	NM_002019	exon9	c.C1224T	p.S408S	TTTTATGCTCAGC	.	38.0	19.0	83.0	0.0	.	393	.	.	Atlas-SNP
EPSTI1	94240	hgsc.bcm.edu	hg19	13	43469145	43469145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	EPSTI1	NM_001002264	exon11	c.G948T	p.W316C	ACTCACCCAGCTG	.	21.0	13.0	83.0	0.0	.	47	.	.	Atlas-SNP
EPSTI1	94240	hgsc.bcm.edu	hg19	13	43469146	43469146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	EPSTI1	NM_001002264	exon11	c.G947T	p.W316L	CTCACCCAGCTGT	.	21.0	13.0	82.0	0.0	.	47	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	49027173	49027173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RB1	NM_000321	exon18	c.A1740C	p.E580D	CCGAGAAGGACCA	.	32.0	11.0	46.0	0.0	.	1068	.	.	Atlas-SNP
ABCC4	10257	hgsc.bcm.edu	hg19	13	95816633	95816633	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ABCC4	NM_005845	exon16	c.A2174T	p.Q725L	TTTACCTGAGCTG	.	60.0	15.0	100.0	0.0	.	248	.	.	Atlas-SNP
RNASE1	6035	hgsc.bcm.edu	hg19	14	21270099	21270099	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RNASE1	NM_198235	exon3	c.A129T	p.S43S	ACTGTCTGAGTCC	.	43.0	8.0	41.0	0.0	.	14	.	.	Atlas-SNP
TOX4	9878	hgsc.bcm.edu	hg19	14	21961062	21961062	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	TOX4,NS,carcinoma,0,2	TOX4	NM_014828	exon7	c.T1287A	p.A429A	AGCAGCTGCTGCT	.	70.0	3.0	102.0	0.0	.	50	.	.	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	hg19	14	59112597	59112597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DACT1	NM_016651	exon4	c.G1256T	p.W419L	AGCAGTGGTCGAA	.	38.0	19.0	59.0	0.0	.	119	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64522760	64522760	+	Silent	SNP	C	C	G	rs373355920	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	SYNE2,caecum,carcinoma,0,1	SYNE2	NM_182914	exon49	c.C9843G	p.P3281P	TATACCCTACAGA	.	176.0	58.0	227.0	0.0	.	577	.	.	Atlas-SNP
EXD2	55218	hgsc.bcm.edu	hg19	14	69676318	69676318	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	EXD2	NM_001193361	exon2	c.A131T	p.Q44L	AGCCACAGCAGAA	.	82.0	55.0	110.0	0.0	.	43	.	.	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	hg19	14	75505088	75505088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MLH3	NM_014381	exon6	c.A3598G	p.I1200V	AGGCAATAAACTT	.	57.0	21.0	77.0	0.0	.	200	.	.	Atlas-SNP
SERPINA3	12	hgsc.bcm.edu	hg19	14	95088801	95088801	+	Silent	SNP	A	A	T	rs1802958	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SERPINA3	NM_001085	exon4	c.A1041T	p.T347T	GATCACAGGGGCC	.	76.0	21.0	124.0	0.0	.	78	.	A|0.990;G|0.010	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28460799	28460799	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	HERC2,NS,carcinoma,0,1	HERC2	NM_004667	exon39	c.G6178C	p.A2060P	AGGGTGCGTGCCC	.	101.0	65.0	123.0	0.0	.	501	.	.	Atlas-SNP
TMCO5A	145942	hgsc.bcm.edu	hg19	15	38228513	38228513	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TMCO5A	.	.	.	.	GTCTATAGGTCGG	.	66.0	17.0	67.0	0.0	.	42	.	.	Atlas-SNP
JMJD7-PLA2G4B	8681	hgsc.bcm.edu	hg19	15	42137485	42137485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	JMJD7-PLA2G4B	NM_005090	exon19	c.A2017G	p.K673E	AACACCAAAGGGC	.	48.0	8.0	85.0	0.0	.	90	.	.	Atlas-SNP
TP53BP1	7158	hgsc.bcm.edu	hg19	15	43700285	43700285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TP53BP1	NM_001141980	exon27	c.C5602A	p.Q1868K	GGGGTTGCCTATG	.	35.0	5.0	71.0	0.0	.	157	.	.	Atlas-SNP
SLC12A1	6557	hgsc.bcm.edu	hg19	15	48577419	48577419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC12A1	NM_001184832	exon21	c.A2602T	p.N868Y	AAGTTGAACATTA	.	156.0	90.0	223.0	1.0	.	243	.	.	Atlas-SNP
PRTG	283659	hgsc.bcm.edu	hg19	15	55931838	55931838	+	Splice_Site	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRTG	NM_173814	exon14	c.2324+2T>A	.	CTACATACGTTTG	.	91.0	31.0	102.0	0.0	.	110	.	.	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	hg19	15	56388218	56388218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RFX7	NM_022841	exon9	c.G1708A	p.G570R	TCTGCCCCAAAAG	.	29.0	7.0	64.0	0.0	.	170	.	.	Atlas-SNP
RLBP1	6017	hgsc.bcm.edu	hg19	15	89754011	89754011	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RLBP1	NM_000326	exon8	c.C714A	p.I238I	GAAGTGGATGGCT	.	211.0	87.0	202.0	0.0	.	34	.	.	Atlas-SNP
FLYWCH1	84256	hgsc.bcm.edu	hg19	16	2980531	2980531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FLYWCH1	NM_020912	exon4	c.A443G	p.Q148R	GCCGCCAACATGC	.	69.0	27.0	50.0	0.0	.	27	.	.	Atlas-SNP
CCDC64B	146439	hgsc.bcm.edu	hg19	16	3085406	3085406	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CCDC64B	NM_001103175	exon1	c.T92A	p.L31Q	CGCTCCAGCACAA	.	66.0	39.0	59.0	0.0	.	19	.	.	Atlas-SNP
RBFOX1	54715	hgsc.bcm.edu	hg19	16	7629893	7629893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	RBFOX1_ENST00000550418,NS,adenoma,0,6	RBFOX1	NM_145891	exon3	c.C445T	p.R149W	AGGTTCCGGGATC	.	214.0	103.0	165.0	0.0	.	341	.	.	Atlas-SNP
KIAA0430	9665	hgsc.bcm.edu	hg19	16	15727694	15727694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KIAA0430	NM_014647	exon5	c.C1013A	p.P338Q	ACTTCTGGTGACC	.	133.0	51.0	110.0	0.0	.	154	.	.	Atlas-SNP
MYH11	4629	hgsc.bcm.edu	hg19	16	15853461	15853461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MYH11	NM_001040114	exon13	c.T1394A	p.L465Q	ATATCCAGGATCC	.	125.0	63.0	122.0	0.0	.	520	.	.	Atlas-SNP
CHD9	80205	hgsc.bcm.edu	hg19	16	53341643	53341643	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CHD9	NM_025134	exon33	c.A6831C	p.K2277N	TCTGAAAGGAAAG	.	183.0	31.0	165.0	0.0	.	203	.	.	Atlas-SNP
GPR114	221188	hgsc.bcm.edu	hg19	16	57608882	57608882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GPR114	NM_153837	exon11	c.A1364G	p.D455G	GCCATGACACTGT	.	36.0	6.0	36.0	0.0	.	52	.	.	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	hg19	16	57731872	57731872	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CCDC135	NM_032269	exon2	c.T11A	p.L4Q	AGGTCCTGAGGGA	.	39.0	8.0	52.0	0.0	.	97	.	.	Atlas-SNP
CTCF	10664	hgsc.bcm.edu	hg19	16	67662374	67662374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CTCF	NM_006565	exon9	c.G1620A	p.M540I	CGACATGCACTTC	.	178.0	113.0	168.0	0.0	.	193	.	.	Atlas-SNP
SLC12A4	6560	hgsc.bcm.edu	hg19	16	67985728	67985728	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC12A4	NM_001145962	exon7	c.A1136T	p.Q379L	CCACCCTGGAGCA	.	72.0	44.0	55.0	0.0	.	81	.	.	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	hg19	16	70852337	70852337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	HYDIN	NM_001270974	exon84	c.A14566T	p.N4856Y	GAGGGTTCTCCAA	.	77.0	16.0	69.0	0.0	.	788	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88499480	88499480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF469	NM_001127464	exon2	c.C5518T	p.P1840S	ACTGCCCCCCGGG	.	118.0	25.0	130.0	0.0	.	121	.	.	Atlas-SNP
CDH15	1013	hgsc.bcm.edu	hg19	16	89256721	89256721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CDH15	NM_004933	exon8	c.C1049A	p.A350E	TGCAGGCGGCTGC	.	111.0	22.0	161.0	0.0	.	54	.	.	Atlas-SNP
ACAP1	9744	hgsc.bcm.edu	hg19	17	7251303	7251303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ACAP1	NM_014716	exon15	c.T1406A	p.L469Q	CAGAACTAGTGAA	.	25.0	17.0	38.0	0.0	.	66	.	.	Atlas-SNP
SHMT1	6470	hgsc.bcm.edu	hg19	17	18250860	18250860	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SHMT1	NM_148918	exon5	c.A469T	p.K157X	TCTTCTTGTCTGT	.	137.0	43.0	86.0	0.0	.	36	.	.	Atlas-SNP
RDM1	201299	hgsc.bcm.edu	hg19	17	34257110	34257110	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RDM1	NM_001034836	exon2	c.G246T	p.R82R	CTGCTTCCGGTCG	.	158.0	31.0	104.0	0.0	.	46	.	.	Atlas-SNP
KRT40	125115	hgsc.bcm.edu	hg19	17	39140202	39140202	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KRT40	NM_182497	exon3	c.C324A	p.R108R	CAGGCTGCGCACC	.	120.0	46.0	93.0	0.0	.	27	.	.	Atlas-SNP
KRT37	8688	hgsc.bcm.edu	hg19	17	39579146	39579146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KRT37	NM_003770	exon3	c.G616A	p.D206N	ACTTGTCCGCCTC	.	49.0	25.0	50.0	0.0	.	61	.	.	Atlas-SNP
KRT35	3886	hgsc.bcm.edu	hg19	17	39637038	39637038	+	Silent	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KRT35	NM_002280	exon1	c.G312C	p.L104L	GTCGTTCAGGGAT	.	103.0	57.0	96.0	0.0	.	58	.	.	Atlas-SNP
AOC2	314	hgsc.bcm.edu	hg19	17	41001329	41001329	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AOC2	NM_009590	exon2	c.C1815G	p.S605R	CCACAGCCCCCTT	.	117.0	23.0	99.0	0.0	.	61	.	.	Atlas-SNP
OSBPL7	114881	hgsc.bcm.edu	hg19	17	45897358	45897358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	OSBPL7,NS,carcinoma,0,1	OSBPL7	NM_145798	exon3	c.G180T	p.W60C	CAGAGGCCACTTC	.	38.0	20.0	30.0	0.0	.	65	.	.	Atlas-SNP
DLX4	1748	hgsc.bcm.edu	hg19	17	48050405	48050405	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DLX4	NM_001934	exon1	c.C36A	p.L12L	CCTCCTCGCCCCC	.	292.0	113.0	283.0	0.0	.	25	.	.	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	57057829	57057829	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PPM1E	NM_014906	exon7	c.T1705A	p.Y569N	CCAGGCTACCTAG	.	119.0	47.0	133.0	0.0	.	97	.	.	Atlas-SNP
ABCA5	23461	hgsc.bcm.edu	hg19	17	67283767	67283767	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ABCA5	NM_018672	exon14	c.T2028A	p.A676A	AATGTCAGCTTCA	.	106.0	19.0	87.0	0.0	.	162	.	.	Atlas-SNP
AZI1	22994	hgsc.bcm.edu	hg19	17	79193699	79193699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	AZI1	NM_014984	exon2	c.A158T	p.E53V	TTCTGCTCGCTGC	.	92.0	18.0	93.0	0.0	.	145	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2732311	2732311	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SMCHD1	NM_015295	exon25	c.A3097T	p.S1033C	CTTCCCAGTAGCC	.	176.0	80.0	194.0	0.0	.	88	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	7949192	7949192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	PTPRM,NS,carcinoma,0,1	PTPRM	NM_001105244	exon6	c.G677A	p.R226Q	ATGTGCGAGATGC	.	54.0	11.0	72.0	0.0	.	185	.	.	Atlas-SNP
IMPA2	3613	hgsc.bcm.edu	hg19	18	12028869	12028869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IMPA2	NM_014214	exon7	c.G628T	p.A210S	ACATTGGCACTCT	.	58.0	23.0	61.0	0.0	.	27	.	.	Atlas-SNP
B4GALT6	9331	hgsc.bcm.edu	hg19	18	29264373	29264373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	B4GALT6	NM_004775	exon1	c.G17A	p.R6Q	ATCATCCGCCTGA	.	58.0	11.0	72.0	0.0	.	44	.	.	Atlas-SNP
PIAS2	9063	hgsc.bcm.edu	hg19	18	44408008	44408008	+	Silent	SNP	T	T	G	rs373537803	alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PIAS2	NM_173206	exon11	c.A1422C	p.I474I	GCTTTCTATTGTA	.	71.0	33.0	97.0	0.0	.	85	.	.	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	hg19	18	59158023	59158023	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CDH20	NM_031891	exon1	c.T237C	p.Y79Y	TTTGTATGTCGGC	.	112.0	47.0	131.0	0.0	.	117	.	.	Atlas-SNP
SERPINB3	6317	hgsc.bcm.edu	hg19	18	61325773	61325773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SERPINB3	NM_006919	exon5	c.A443G	p.N148S	CAGGAGTTAATCT	.	113.0	22.0	106.0	0.0	.	90	.	.	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	hg19	19	1005395	1005395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GRIN3B	NM_138690	exon3	c.T1895A	p.V632E	GCACCGTGTCCAG	.	97.0	70.0	128.0	0.0	.	46	.	.	Atlas-SNP
TMEM259	91304	hgsc.bcm.edu	hg19	19	1014293	1014293	+	Silent	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_033420	exon2	c.G405C	p.G135G	GAAGCTCCCGCGG	.	100.0	33.0	132.0	0.0	.	.	.	.	Atlas-SNP
ATP8B3	148229	hgsc.bcm.edu	hg19	19	1796124	1796124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ATP8B3	NM_138813	exon17	c.C1894A	p.L632M	TGGCCAGGACCTG	.	75.0	36.0	94.0	0.0	.	108	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9071656	9071656	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MUC16	NM_024690	exon3	c.T15790G	p.S5264A	CTGCAGATTTTGT	.	50.0	22.0	95.0	0.0	.	4315	.	.	Atlas-SNP
S1PR5	53637	hgsc.bcm.edu	hg19	19	10624601	10624601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	S1PR5	NM_030760	exon2	c.T1087A	p.S363T	GCTCCGAGCCGCT	.	18.0	15.0	46.0	0.0	.	33	.	.	Atlas-SNP
RTBDN	83546	hgsc.bcm.edu	hg19	19	12936625	12936625	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RTBDN	NM_031429	exon7	c.A681T	p.G227G	CCGTCGTCCTGGT	.	105.0	89.0	156.0	0.0	.	26	.	.	Atlas-SNP
OR7C2	26658	hgsc.bcm.edu	hg19	19	15052983	15052983	+	Missense_Mutation	SNP	T	T	C	rs78307433		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OR7C2	NM_012377	exon1	c.T683C	p.V228A	TAAGAGTATCTGC	.	1064.0	44.0	101.0	0.0	.	50	.	.	Atlas-SNP
FCHO1	23149	hgsc.bcm.edu	hg19	19	17886926	17886926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	FCHO1	NM_001161358	exon15	c.C1138A	p.L380I	GCACAGCTCAGGG	.	34.0	32.0	45.0	0.0	.	69	.	.	Atlas-SNP
ZNF486	90649	hgsc.bcm.edu	hg19	19	20308783	20308783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF486	NM_052852	exon4	c.A1264G	p.T422A	AATCTAACTGAAC	.	71.0	28.0	113.0	0.0	.	74	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36214899	36214899	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MLL4	NM_014727	exon8	c.C3325T	p.R1109X	ACCCCCCGAGAAA	.	137.0	21.0	72.0	0.0	.	229	.	.	Atlas-SNP
SIPA1L3	23094	hgsc.bcm.edu	hg19	19	38572737	38572737	+	Missense_Mutation	SNP	G	G	A	rs377070862		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SIPA1L3	NM_015073	exon3	c.G532A	p.E178K	CTCAGCGAGTGTG	.	58.0	11.0	37.0	0.0	.	150	.	.	Atlas-SNP
ACTN4	81	hgsc.bcm.edu	hg19	19	39207845	39207845	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ACTN4	NM_004924	exon10	c.G1032A	p.P344P	CAAGCCGCCCAAG	.	176.0	14.0	101.0	0.0	.	69	.	.	Atlas-SNP
CEACAM7	1087	hgsc.bcm.edu	hg19	19	42187899	42187899	+	Missense_Mutation	SNP	T	T	A	rs201378485	by1000genomes;alternate_allele	TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	CEACAM7	NM_006890	exon3	c.A523T	p.T175S	AGGTTGTGTTCTG	.	130.0	86.0	91.0	0.0	.	33	.	T|1.000;C|0.000	Atlas-SNP
KCNN4	3783	hgsc.bcm.edu	hg19	19	44271859	44271859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KCNN4	NM_002250	exon8	c.A1120G	p.M374V	TGTGCATCTGGGT	.	82.0	49.0	69.0	0.0	.	37	.	.	Atlas-SNP
PTGIR	5739	hgsc.bcm.edu	hg19	19	47127137	47127137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PTGIR	NM_000960	exon2	c.G346A	p.E116K	AGCGCTCCACGGC	.	98.0	20.0	57.0	0.0	.	31	.	.	Atlas-SNP
ZNF808	388558	hgsc.bcm.edu	hg19	19	53056843	53056843	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF808	NM_001039886	exon5	c.A674T	p.H225L	AAGTACACATGAG	.	153.0	98.0	70.0	0.0	.	81	.	.	Atlas-SNP
BIRC8	112401	hgsc.bcm.edu	hg19	19	53793422	53793422	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BIRC8	NM_033341	exon1	c.T206A	p.L69Q	TCTAGCAGATATT	.	196.0	124.0	132.0	0.0	.	54	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55493848	55493848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	NLRP2	NM_017852	exon6	c.T782A	p.L261Q	CAGAGCTGGTCTT	.	177.0	48.0	123.0	0.0	.	161	.	.	Atlas-SNP
ZNF256	10172	hgsc.bcm.edu	hg19	19	58453484	58453484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZNF256	NM_005773	exon3	c.G692C	p.G231A	AGGTCTCCCTGGT	.	201.0	25.0	106.0	0.0	.	117	.	.	Atlas-SNP
TASP1	55617	hgsc.bcm.edu	hg19	20	13550171	13550171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TASP1	NM_017714	exon7	c.C551A	p.P184H	ATGTTAGGAGGGC	.	44.0	30.0	43.0	0.0	.	52	.	.	Atlas-SNP
GZF1	64412	hgsc.bcm.edu	hg19	20	23350846	23350846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GZF1	NM_022482	exon5	c.C1904T	p.S635L	AGCTTTCGGATAA	.	119.0	13.0	177.0	0.0	.	61	.	.	Atlas-SNP
C20orf112	140688	hgsc.bcm.edu	hg19	20	31043960	31043960	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	C20orf112	NM_001256798	exon6	c.G1080A	p.L360L	GCTCCGCAGCCCG	.	48.0	12.0	56.0	0.0	.	39	.	.	Atlas-SNP
RBPJL	11317	hgsc.bcm.edu	hg19	20	43942173	43942173	+	Missense_Mutation	SNP	C	C	T	rs370206478		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	RBPJL	NM_014276	exon7	c.C685T	p.R229C	TCCACACGCTACC	.	65.0	47.0	59.0	0.0	.	67	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47273608	47273608	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PREX1	NM_020820	exon18	c.T2093A	p.L698Q	AGGCGCAGAGGGC	.	45.0	13.0	36.0	0.0	.	441	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47444283	47444283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PREX1	NM_020820	exon1	c.G115A	p.A39T	GGGCGGCCGCGCA	.	62.0	16.0	70.0	0.0	.	441	.	.	Atlas-SNP
ZFP64	55734	hgsc.bcm.edu	hg19	20	50782528	50782528	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZFP64	NM_018197	exon3	c.A323T	p.Q108L	TAAGTTTGATAGC	.	94.0	66.0	107.0	0.0	.	240	.	.	Atlas-SNP
PHACTR3	116154	hgsc.bcm.edu	hg19	20	58318246	58318246	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PHACTR3	NM_080672	exon2	c.T203A	p.L68Q	GCAAACTGGCCAC	.	154.0	107.0	194.0	0.0	.	104	.	.	Atlas-SNP
PSMA7	5688	hgsc.bcm.edu	hg19	20	60713291	60713291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PSMA7	NM_002792	exon5	c.A527G	p.Y176C	TCAGTATAGTTCT	.	138.0	95.0	143.0	0.0	.	13	.	.	Atlas-SNP
GATA5	140628	hgsc.bcm.edu	hg19	20	61040413	61040413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	GATA5	NM_080473	exon6	c.C1021A	p.P341T	TGCTGGGCCCAGG	.	13.0	8.0	8.0	0.0	.	22	.	.	Atlas-SNP
ITGB2	3689	hgsc.bcm.edu	hg19	21	46308698	46308698	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ITGB2	NM_000211	exon14	c.G1990C	p.E664Q	CCCTCTCCTTGCA	.	34.0	23.0	37.0	0.0	.	107	.	.	Atlas-SNP
PCBP3	54039	hgsc.bcm.edu	hg19	21	47333904	47333904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PCBP3	NM_020528	exon8	c.C640T	p.P214S	CCAAAGCCCGCCT	.	26.0	11.0	33.0	0.0	.	82	.	.	Atlas-SNP
P2RX6	9127	hgsc.bcm.edu	hg19	22	21377002	21377002	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	NM_005446	exon4	c.A425T	p.E142V	TCGACGAGGACTG	.	98.0	30.0	80.0	0.0	.	.	.	.	Atlas-SNP
PRR14L	253143	hgsc.bcm.edu	hg19	22	32108298	32108298	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRR14L	NM_173566	exon4	c.A5527T	p.S1843C	TGTGGCTGGAGAA	.	158.0	78.0	142.0	0.0	.	198	.	.	Atlas-SNP
KCNJ4	3761	hgsc.bcm.edu	hg19	22	38823554	38823554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KCNJ4	NM_004981	exon2	c.T584A	p.V195E	TCGCGCACCGAAA	.	55.0	31.0	44.0	0.0	.	74	.	.	Atlas-SNP
PNPLA3	80339	hgsc.bcm.edu	hg19	22	44332942	44332942	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PNPLA3	NM_025225	exon6	c.A769T	p.R257W	TGCAACAGGCCCC	.	50.0	17.0	49.0	0.0	.	53	.	.	Atlas-SNP
PRR5-ARHGAP8	553158	hgsc.bcm.edu	hg19	22	45210622	45210622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRR5-ARHGAP8	NM_181334	exon8	c.T736G	p.L246V	AACATCTTGAAGC	.	88.0	21.0	79.0	0.0	.	53	.	.	Atlas-SNP
MBTPS2	51360	hgsc.bcm.edu	hg19	X	21887622	21887622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MBTPS2	NM_015884	exon7	c.C796T	p.P266S	GACTCTCCTGCCA	.	69.0	64.0	60.0	0.0	.	52	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32429921	32429921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	DMD	NM_004006	exon30	c.C4181A	p.A1394E	TAAGCTGCCAACT	.	60.0	60.0	54.0	0.0	.	2127	.	.	Atlas-SNP
BCOR	54880	hgsc.bcm.edu	hg19	X	39932115	39932115	+	Silent	SNP	T	T	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	BCOR	NM_001123385	exon4	c.A2484T	p.A828A	ACTCTCTGCTGCA	.	44.0	39.0	63.0	0.0	.	351	.	.	Atlas-SNP
MAOA	4128	hgsc.bcm.edu	hg19	X	43603116	43603116	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MAOA	NM_000240	exon13	c.A1338T	p.E446D	CATGGAAGGGGCA	.	34.0	31.0	43.0	0.0	.	48	.	.	Atlas-SNP
PRAF2	11230	hgsc.bcm.edu	hg19	X	48931536	48931536	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRAF2	NM_007213	exon1	c.C111A	p.V37V	GTTGATGACGCGG	.	41.0	34.0	25.0	0.0	.	14	.	.	Atlas-SNP
OPHN1	4983	hgsc.bcm.edu	hg19	X	67293091	67293091	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	OPHN1	NM_002547	exon20	c.T1737A	p.P579P	CACCCGAGGCGGA	.	98.0	91.0	97.0	0.0	.	75	.	.	Atlas-SNP
IL13RA2	3598	hgsc.bcm.edu	hg19	X	114249118	114249118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	IL13RA2	NM_000640	exon4	c.T266A	p.L89Q	TAATGTAGATTCT	.	43.0	40.0	54.0	0.0	.	66	.	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118223434	118223434	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	KIAA1210	NM_020721	exon11	c.T1759A	p.L587M	AGGACAAGTGCGA	.	42.0	40.0	42.0	0.0	.	171	.	.	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	hg19	X	140994576	140994576	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	MAGEC1	NM_005462	exon4	c.C1386A	p.S462S	GAGTTCCCCTGAG	.	121.0	12.0	123.0	0.0	.	317	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12736	12736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	.	ENST00000361567	exon1	c.G400A	p.A134T	GTTACCGCTAACA	.	388.0	29.0	24.0	0.0	.	.	.	.	Atlas-SNP
TAS2R9	50835	hgsc.bcm.edu	hg19	12	10962090	10962091	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TAS2R9	NM_023917	exon1	c.585_586insT	p.L195fs	.	.	168.0	27.0	132.0	0.0	.	39	.	.	Atlas-Indel,Pindel
ZBTB20	26137	hgsc.bcm.edu	hg19	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	ZBTB20	NM_001164342	exon5	c.2076delT	p.P692fs	.	.	70.0	22.0	70.0	0.0	.	157	.	.	Atlas-Indel,Pindel
DHX16	8449	hgsc.bcm.edu	hg19	6	30621047	30621048	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.,1	DHX16	NM_003587	exon20	c.3098_3099insA	p.I1033fs	.	.	165.0	82.0	100.0	0.0	.	119	.	.	Atlas-Indel,Pindel
TP53	7157	hgsc.bcm.edu	hg19	17	7577531	7577538	+	Frame_Shift_Del	DEL	GGGCCTCC	GGGCCTCC	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	GGGCCTCC	GGGCCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	TP53_ENST00000455263,NS,malignant_melanoma,+1,4	TP53	NM_001126112	exon7	c.744_751del	p.248_251del	.	.	24.0	18.0	77.0	0.0	.	33396	.	.	Atlas-Indel,Pindel
PRR12	57479	hgsc.bcm.edu	hg19	19	50102990	50102992	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	PRR12	NM_020719	exon5	c.4139_4141del	p.1380_1381del	.	.	126.0	23.0	86.0	0.0	.	157	.	.	Atlas-Indel,Pindel
TMX2	51075	hgsc.bcm.edu	hg19	11	57505430	57505441	+	In_Frame_Del	DEL	TGGCCAACACAA	TGGCCAACACAA	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	TGGCCAACACAA	TGGCCAACACAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	TMX2	NM_015959	exon3	c.295_306del	p.99_102del	.	.	82.0	22.0	160.0	0.0	.	29	.	.	Atlas-Indel,Pindel
SLC10A1	6554	hgsc.bcm.edu	hg19	14	70263762	70263764	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	SLC10A1	NM_003049	exon1	c.110_112del	p.37_38del	.	.	88.0	43.0	114.0	0.0	.	32	.	.	Atlas-Indel,Pindel
LCORL	254251	hgsc.bcm.edu	hg19	4	18023321	18023322	+	In_Frame_Ins	INS	-	-	GCGGCGGCAGCA	novel		TCGA-ED-A7PZ-01A-11D-A33Q-10	TCGA-ED-A7PZ-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b9271fe2-2c4b-4513-8eac-853a1acc9568	84111421-4619-45db-918a-9570d676c285	.	LCORL	NM_001166139	exon1	c.54_55insTGCTGCCGCCGC	p.A18delinsAAAAA	.	.	72.0	15.0	47.0	0.0	.	60	.	.	Atlas-INDEL
