Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TAS1R3	83756	hgsc.bcm.edu	hg19	1	1266874	1266874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TAS1R3	NM_152228	exon1	c.G149A	p.G50D	AGGCTGGCCTCCG	.	40.0	6.0	31.0	0.0	.	39	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19408022	19408022	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	UBR4,colon,carcinoma,0,1	UBR4	NM_020765	exon103	c.G15054T	p.L5018L	CTGTTCCAGAAAG	.	91.0	24.0	56.0	1.0	.	415	.	.	Atlas-SNP
FAF1	11124	hgsc.bcm.edu	hg19	1	51323604	51323604	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FAF1	NM_007051	exon2	c.A111T	p.L37F	TACCACTAAGTCC	.	260.0	42.0	223.0	0.0	.	64	.	.	Atlas-SNP
PDE4B	5142	hgsc.bcm.edu	hg19	1	66713174	66713174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PDE4B	NM_001037341	exon4	c.C313G	p.R105G	CCAGGTCGGAGTC	.	91.0	26.0	99.0	0.0	.	231	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152281994	152281994	+	Missense_Mutation	SNP	G	G	T	rs200622741	bycluster;alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	FLG	NM_002016	exon3	c.C5368A	p.Q1790K	ATCTTTGTCTTCC	.	122.0	31.0	125.0	0.0	.	900	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185902929	185902929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HMCN1	NM_031935	exon11	c.G1801A	p.A601T	TCATCAGCCGCTT	.	68.0	10.0	55.0	0.0	.	797	.	.	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	hg19	1	200562884	200562884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIF14	NM_014875	exon15	c.T2563G	p.F855V	CACCAAAATTTTT	.	79.0	14.0	73.0	0.0	.	156	.	.	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	hg19	1	201196308	201196308	+	Silent	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	IGFN1	NM_001164586	exon23	c.A11085T	p.A3695A	CCAGGCAGTCAGC	.	45.0	17.0	29.0	0.0	.	220	.	.	Atlas-SNP
CENPO	79172	hgsc.bcm.edu	hg19	2	25016357	25016357	+	Silent	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CENPO	NM_001199803	exon1	c.C15T	p.L5L	AATTCTCGCTTCT	.	94.0	24.0	63.0	0.0	.	18	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37295937	37295937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HEATR5B	NM_019024	exon8	c.G1064A	p.R355Q	ACACATCGTCTGG	.	65.0	13.0	53.0	0.0	.	185	.	.	Atlas-SNP
NAGK	55577	hgsc.bcm.edu	hg19	2	71304745	71304745	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	NAGK	NM_017567	exon9	c.A961T	p.S321C	TGGAAGAGCTGGG	.	61.0	10.0	47.0	0.0	.	34	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197081786	197081786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HECW2	NM_020760	exon27	c.G4440T	p.W1480C	CCAGAACCACCGA	.	93.0	18.0	88.0	0.0	.	239	.	.	Atlas-SNP
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48451118	48451118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PLXNB1	NM_001130082	exon33	c.G5800T	p.D1934Y	GGTCATCCACGAA	.	93.0	10.0	74.0	0.0	.	150	.	.	Atlas-SNP
KIAA1524	57650	hgsc.bcm.edu	hg19	3	108281998	108281998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	KIAA1524,NS,carcinoma,0,1	KIAA1524	NM_020890	exon13	c.C1609G	p.P537A	GCAGTGGAGCAGC	.	200.0	34.0	174.0	1.0	.	82	.	.	Atlas-SNP
ZIC4	84107	hgsc.bcm.edu	hg19	3	147113833	147113833	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ZIC4	NM_001168378	exon3	c.G644C	p.G215A	TCCGGGCCGCCGA	.	61.0	8.0	65.0	0.0	.	174	.	.	Atlas-SNP
HTR3C	170572	hgsc.bcm.edu	hg19	3	183772621	183772621	+	Nonsense_Mutation	SNP	C	C	A	rs180785188	bycluster;by1000genomes;alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	HTR3C	NM_130770	exon2	c.C180A	p.Y60X	CAACTACAGCATC	.	81.0	16.0	56.0	0.0	.	65	.	C|0.999;T|0.001	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57180856	57180856	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIAA1211	NM_020722	exon8	c.G1188A	p.A396A	GGGCGCGGAGGAG	.	41.0	15.0	26.0	0.0	.	178	.	.	Atlas-SNP
TKTL2	84076	hgsc.bcm.edu	hg19	4	164393739	164393739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TKTL2	NM_032136	exon1	c.G1148T	p.R383L	CGACCACGTGTAG	.	61.0	11.0	72.0	0.0	.	130	.	.	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	hg19	4	177041041	177041041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	WDR17	NM_170710	exon5	c.T403C	p.C135R	AGTTGGTGCTGGA	.	179.0	20.0	181.0	0.0	.	198	.	.	Atlas-SNP
CWC27	10283	hgsc.bcm.edu	hg19	5	64079679	64079679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	CWC27,colon,carcinoma,0,1	CWC27	NM_005869	exon4	c.G269T	p.R90L	ATTCACGGTTGCG	.	77.0	18.0	69.0	0.0	.	47	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82836639	82836639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	VCAN	NM_004385	exon8	c.A7817G	p.H2606R	AACCACATGACAG	.	74.0	21.0	74.0	0.0	.	498	.	.	Atlas-SNP
SLCO4C1	353189	hgsc.bcm.edu	hg19	5	101592902	101592902	+	Silent	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SLCO4C1	NM_180991	exon8	c.A1386G	p.G462G	TGCAACTCCAGAT	.	353.0	73.0	272.0	0.0	.	113	.	.	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	hg19	6	43401071	43401071	+	Missense_Mutation	SNP	G	G	A	rs367899886		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ABCC10	NM_001198934	exon3	c.G1353A	p.M451I	GGAAATGCTACAG	.	63.0	8.0	49.0	0.0	.	118	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75887438	75887438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	COL12A1	NM_004370	exon12	c.T2378C	p.I793T	TCAGGAATTACAG	.	139.0	25.0	140.0	0.0	.	385	.	.	Atlas-SNP
LCA5	167691	hgsc.bcm.edu	hg19	6	80197406	80197406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	LCA5	NM_001122769	exon8	c.A1409G	p.K470R	TTCAGTTTAGCAA	.	231.0	49.0	242.0	0.0	.	71	.	.	Atlas-SNP
MYB	4602	hgsc.bcm.edu	hg19	6	135515497	135515497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	MYB	NM_001161656	exon8	c.C847A	p.H283N	CAGAGACACTATA	.	62.0	9.0	61.0	0.0	.	137	.	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138603314	138603314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KIAA1549	NM_020910	exon2	c.C1058T	p.A353V	CTGAATGCAAGGG	.	55.0	9.0	32.0	0.0	.	314	.	.	Atlas-SNP
PLAG1	5324	hgsc.bcm.edu	hg19	8	57080762	57080762	+	Missense_Mutation	SNP	G	G	A	rs144724863		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	PLAG1_ENST00000316981,colon,carcinoma,+1,1	PLAG1	NM_001114634	exon3	c.C67T	p.R23C	GCTTACGTTTCCC	.	98.0	8.0	110.0	0.0	.	123	.	G|1.000;A|0.000	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	68864764	68864764	+	Silent	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PREX2	NM_025170	exon1	c.G135T	p.L45L	GTTCCTGGTGTCG	.	113.0	14.0	101.0	0.0	.	614	.	.	Atlas-SNP
ANGPT1	284	hgsc.bcm.edu	hg19	8	108348431	108348431	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ANGPT1	NM_001199859	exon3	c.G522C	p.E174D	TTGCTTCTCTAGC	.	157.0	32.0	133.0	0.0	.	111	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	371468	371468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DOCK8	NM_203447	exon17	c.G1909T	p.A637S	CTCCCCGCTAAGC	.	117.0	20.0	109.0	0.0	.	401	.	.	Atlas-SNP
DDX58	23586	hgsc.bcm.edu	hg19	9	32489378	32489378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DDX58	NM_014314	exon6	c.A763G	p.M255V	CTTTCATAGCAGG	.	190.0	25.0	130.0	0.0	.	82	.	.	Atlas-SNP
S1PR3	1903	hgsc.bcm.edu	hg19	9	91616133	91616133	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	S1PR3	NM_005226	exon2	c.G18A	p.P6P	CCTCCCGCCGCGT	.	48.0	10.0	43.0	0.0	.	49	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73330627	73330627	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CDH23	NM_052836	exon8	c.C705A	p.I235I	CCCCATCTTCATC	.	83.0	13.0	105.0	0.0	.	365	.	.	Atlas-SNP
AP2A2	161	hgsc.bcm.edu	hg19	11	985500	985500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	AP2A2	NM_001242837	exon8	c.C883T	p.P295S	GAACCGCCCAAGT	.	46.0	8.0	27.0	0.0	.	50	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66460755	66460755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	SPTBN2	NM_006946	exon23	c.G4756T	p.D1586Y	GGGCATCCTCCAG	.	41.0	15.0	52.0	0.0	.	188	.	.	Atlas-SNP
KLHL35	283212	hgsc.bcm.edu	hg19	11	75134789	75134789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KLHL35	NM_001039548	exon5	c.T1510A	p.Y504N	GATCATAGGTGAA	.	32.0	9.0	35.0	0.0	.	15	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103006470	103006470	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	DYNC2H1	NM_001377	exon17	c.G2367C	p.R789S	ATTCAGGCCCCCT	.	140.0	32.0	144.0	0.0	.	246	.	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	hg19	12	20769305	20769305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PDE3A	NM_000921	exon4	c.G1411A	p.A471T	CAGGAAGCACCTT	.	40.0	9.0	47.0	0.0	.	184	.	.	Atlas-SNP
CUX2	23316	hgsc.bcm.edu	hg19	12	111655734	111655734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CUX2	NM_015267	exon3	c.A215T	p.Q72L	GCTTCCAAGCCGA	.	53.0	11.0	36.0	0.0	.	145	.	.	Atlas-SNP
CLIP1	6249	hgsc.bcm.edu	hg19	12	122845703	122845703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CLIP1	NM_002956	exon5	c.G808A	p.G270S	ACAAGCCATATTT	.	62.0	15.0	50.0	0.0	.	126	.	.	Atlas-SNP
C14orf37	145407	hgsc.bcm.edu	hg19	14	58478850	58478850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	C14orf37	NM_001001872	exon6	c.A2108G	p.K703R	TTTAATTTTTCCA	.	573.0	89.0	446.0	0.0	.	87	.	.	Atlas-SNP
KCNH5	27133	hgsc.bcm.edu	hg19	14	63468076	63468076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	KCNH5	NM_172375	exon4	c.C406A	p.Q136K	TTGGCTGTTTGAA	.	94.0	16.0	68.0	0.0	.	320	.	.	Atlas-SNP
AHSA1	10598	hgsc.bcm.edu	hg19	14	77931884	77931884	+	Silent	SNP	T	T	G	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	AHSA1	NM_012111	exon6	c.T564G	p.A188A	ACAGGCTAAGCCT	.	36.0	7.0	31.0	0.0	.	24	.	.	Atlas-SNP
ALDH1A2	8854	hgsc.bcm.edu	hg19	15	58254254	58254254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ALDH1A2	NM_003888	exon10	c.G1207T	p.V403L	AAAACACTGTGGG	.	158.0	25.0	148.0	0.0	.	69	.	.	Atlas-SNP
PEAK1	0	hgsc.bcm.edu	hg19	15	77407661	77407661	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_024776	exon8	c.A4078T	p.I1360F	TACAGATCTGAAA	.	47.0	8.0	41.0	0.0	.	.	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24831569	24831569	+	Silent	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	TNRC6A	NM_014494	exon22	c.G5190A	p.P1730P	TGCTCCGTCCCGC	.	121.0	28.0	100.0	0.0	.	171	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577511	7577511	+	Missense_Mutation	SNP	A	A	G	rs28934577	bycluster;alternate_allele	TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	TP53_ENST00000413465,colon,carcinoma,+1,27	TP53	NM_000546	exon7	c.T770C	p.L257P	TCTTCCAGTGTGA	.	64.0	17.0	80.0	0.0	.	33396	.	.	Atlas-SNP
EMR3	84658	hgsc.bcm.edu	hg19	19	14748990	14748990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	EMR3	NM_032571	exon11	c.G1411A	p.G471S	CATAGCCGACTGG	.	88.0	18.0	52.0	0.0	.	99	.	.	Atlas-SNP
ENTPD6	955	hgsc.bcm.edu	hg19	20	25203506	25203506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	ENTPD6	NM_001247	exon12	c.G1078T	p.V360L	GCCAGAGTGTCAG	.	55.0	12.0	39.0	0.0	.	57	.	.	Atlas-SNP
CTNNBL1	56259	hgsc.bcm.edu	hg19	20	36470822	36470822	+	Splice_Site	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	CTNNBL1	NM_030877	exon13	c.1392+1G>A	.	AAACACGTATGTA	.	89.0	17.0	78.0	0.0	.	78	.	.	Atlas-SNP
EWSR1	2130	hgsc.bcm.edu	hg19	22	29695604	29695604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	EWSR1	NM_013986	exon17	c.G1709T	p.R570I	GTGGCAGAGGTGG	.	116.0	21.0	107.0	0.0	.	104	.	.	Atlas-SNP
RAI2	10742	hgsc.bcm.edu	hg19	X	17819379	17819379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	RAI2	NM_001172739	exon3	c.C752T	p.P251L	GGCATCGGGATGG	.	63.0	19.0	53.0	0.0	.	66	.	.	Atlas-SNP
PTCHD1	139411	hgsc.bcm.edu	hg19	X	23398175	23398175	+	Silent	SNP	C	C	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	PTCHD1	NM_173495	exon2	c.C819A	p.V273V	CCTGGTCACCAGC	.	59.0	21.0	48.0	0.0	.	213	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135441570	135441570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	GPR112	NM_153834	exon11	c.T7100C	p.L2367S	ATCAATTGACGTT	.	167.0	63.0	111.0	0.0	.	459	.	.	Atlas-SNP
SMIM5	643008	hgsc.bcm.edu	hg19	17	73636388	73636389	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A7XO-01A-11D-A34Z-10	TCGA-ED-A7XO-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a3d6c15a-8dd7-4b2c-b41a-33c2d4412d80	a83a44f3-45ec-4725-bef7-e1656fef6932	.	.	NM_001162995	exon2	c.107_108insA	p.S36fs	.	.	76.0	10.0	78.0	0.0	.	.	.	.	Atlas-INDEL
