Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
DIRAS3	9077	hgsc.bcm.edu	hg19	1	68512917	68512917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	DIRAS3	NM_004675	exon2	c.G64A	p.A22T	GCAGGGCGGGCAG	.	139.0	11.0	62.0	0.0	.	31	.	.	Atlas-SNP
LCE3D	84648	hgsc.bcm.edu	hg19	1	152552238	152552238	+	Missense_Mutation	SNP	G	G	A	rs199832759		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	LCE3D	NM_032563	exon2	c.C175T	p.R59C	GGTGGCGCCTGTG	.	248.0	63.0	159.0	0.0	.	28	.	G|0.999;A|0.001	Atlas-SNP
PMVK	10654	hgsc.bcm.edu	hg19	1	154898884	154898884	+	Missense_Mutation	SNP	G	G	A	rs150445298	bycluster	TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	PMVK,NS,carcinoma,0,1	PMVK	NM_006556	exon4	c.C388T	p.R130C	CAACGCGGACCGT	.	70.0	22.0	52.0	1.0	.	17	.	G|1.000;A|0.000	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177250365	177250365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	FAM5B,NS,carcinoma,0,1	FAM5B	NM_021165	exon8	c.G2053T	p.V685F	TTGCAGGTCTTTG	.	56.0	19.0	94.0	1.0	.	191	.	.	Atlas-SNP
TRAF3IP3	80342	hgsc.bcm.edu	hg19	1	209953899	209953899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	TRAF3IP3	NM_025228	exon15	c.T1397G	p.L466R	GGGATCTCAGAGA	.	164.0	17.0	105.0	0.0	.	68	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	51254752	51254752	+	Silent	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	NRXN1_ENST00000536085,colon,carcinoma,0,3	NRXN1	NM_004801	exon2	c.C660T	p.G220G	CTCCTCGCCCGCC	.	136.0	23.0	118.0	0.0	.	1118	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84861695	84861695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	DNAH6	NM_001370	exon30	c.G4583T	p.R1528L	TTAATCGAATTGA	.	100.0	4.0	92.0	0.0	.	194	.	.	Atlas-SNP
INSIG2	51141	hgsc.bcm.edu	hg19	2	118865873	118865873	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	INSIG2	NM_016133	exon6	c.T653A	p.I218N	AAGTTATCGCAGA	.	571.0	91.0	401.0	0.0	.	30	.	.	Atlas-SNP
PTPN4	5775	hgsc.bcm.edu	hg19	2	120712792	120712792	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	PTPN4	NM_002830	exon20	c.G1873T	p.E625X	ATTCCTGAGAAAG	.	68.0	15.0	45.0	0.0	.	89	.	.	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133541516	133541516	+	Silent	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	NCKAP5	NM_207363	exon14	c.C2868T	p.S956S	GGTTTCGGACTTG	.	128.0	23.0	127.0	0.0	.	322	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211473186	211473186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	CPS1	NM_001122633	exon20	c.G2312A	p.S771N	AACCTAGCCTGGA	.	163.0	39.0	104.0	0.0	.	485	.	.	Atlas-SNP
UGT1A8	54576	hgsc.bcm.edu	hg19	2	234526724	234526724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	UGT1A8	NM_019076	exon1	c.G371T	p.C124F	CGCATTGCAGGAG	.	161.0	28.0	123.0	0.0	.	69	.	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53804516	53804516	+	Silent	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	CACNA1D	NM_000720	exon33	c.G4041A	p.V1347V	ATTGGTGAAGCTT	.	74.0	27.0	67.0	0.0	.	324	.	.	Atlas-SNP
FOXP1	27086	hgsc.bcm.edu	hg19	3	71064720	71064720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	FOXP1	NM_001244815	exon7	c.A960T	p.E320D	GAAATCTTCGCAC	.	166.0	24.0	146.0	0.0	.	104	.	.	Atlas-SNP
AFAP1	60312	hgsc.bcm.edu	hg19	4	7844908	7844908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	AFAP1	NM_001134647	exon5	c.G504T	p.Q168H	GGTCCACTGGCCG	.	112.0	39.0	63.0	0.0	.	93	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126370127	126370127	+	Silent	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	FAT4	NM_024582	exon9	c.C7956T	p.Y2652Y	CTCTTACGAGAAA	.	107.0	36.0	96.0	0.0	.	1752	.	.	Atlas-SNP
NKD2	85409	hgsc.bcm.edu	hg19	5	1038444	1038444	+	Missense_Mutation	SNP	G	G	C	rs4996020	alternate_allele	TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.,1	NKD2	NM_033120	exon10	c.G1312C	p.E438Q	CACCACGAGCACC	.	27.0	8.0	11.0	0.0	.	39	.	.	Atlas-SNP
NKD2	85409	hgsc.bcm.edu	hg19	5	1038446	1038446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	NKD2	NM_033120	exon10	c.G1314C	p.E438D	CCACGAGCACCAC	.	24.0	5.0	11.0	0.0	.	39	.	.	Atlas-SNP
ARSK	153642	hgsc.bcm.edu	hg19	5	94922268	94922268	+	Silent	SNP	G	G	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	ARSK	NM_198150	exon5	c.G702T	p.V234V	TTAGGTGTCTCAT	.	355.0	57.0	288.0	0.0	.	29	.	.	Atlas-SNP
KCNN2	3781	hgsc.bcm.edu	hg19	5	113740180	113740180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	KCNN2	NM_021614	exon3	c.A628T	p.T210S	GCCATGACTTATG	.	48.0	7.0	54.0	0.0	.	144	.	.	Atlas-SNP
PCDHGB2	56103	hgsc.bcm.edu	hg19	5	140740865	140740865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	PCDHGB2	NM_018923	exon1	c.G1163A	p.G388E	TGTTGGGAAATGC	.	178.0	46.0	166.0	0.0	.	196	.	.	Atlas-SNP
SLC36A3	285641	hgsc.bcm.edu	hg19	5	150660677	150660677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	SLC36A3	NM_001145017	exon10	c.G1165A	p.V389I	CTGGGACGTGGAA	.	119.0	13.0	89.0	0.0	.	54	.	.	Atlas-SNP
ZFP2	80108	hgsc.bcm.edu	hg19	5	178359427	178359427	+	Silent	SNP	G	G	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	ZFP2	NM_030613	exon5	c.G1113T	p.V371V	TACCGTGCATCAG	.	81.0	28.0	64.0	0.0	.	70	.	.	Atlas-SNP
ZFP57	346171	hgsc.bcm.edu	hg19	6	29641328	29641328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	ZFP57	NM_001109809	exon4	c.G560A	p.R187H	TAGGAGCGCCTGC	.	161.0	41.0	117.0	0.0	.	80	.	.	Atlas-SNP
FTSJD2	23070	hgsc.bcm.edu	hg19	6	37403498	37403498	+	Silent	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	FTSJD2	NM_015050	exon2	c.C93T	p.S31S	CACGTCCGATGAT	.	182.0	41.0	117.0	0.0	.	64	.	.	Atlas-SNP
ZPBP	11055	hgsc.bcm.edu	hg19	7	50097728	50097728	+	Missense_Mutation	SNP	C	C	T	rs201273041	bycluster	TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	ZPBP,NS,carcinoma,0,1	ZPBP	NM_007009	exon4	c.G344A	p.R115H	GCAGTGCGGTTTT	.	144.0	18.0	111.0	0.0	.	65	.	.	Atlas-SNP
DYNC1I1	1780	hgsc.bcm.edu	hg19	7	95442633	95442633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	DYNC1I1	NM_004411	exon4	c.C349A	p.L117M	GGCGATCTGGGGC	.	149.0	47.0	95.0	0.0	.	111	.	.	Atlas-SNP
KEL	3792	hgsc.bcm.edu	hg19	7	142641785	142641785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	KEL	NM_000420	exon12	c.G1358A	p.R453H	CTGAGGCGAGTGA	.	84.0	21.0	73.0	0.0	.	128	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3015485	3015485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	CSMD1	NM_033225	exon39	c.C5848T	p.R1950C	GGGAACGGCCCTG	.	317.0	88.0	273.0	0.0	.	1469	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3216751	3216751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	CSMD1_ENST00000537824,NS,carcinoma,-1,3	CSMD1	NM_033225	exon21	c.G3227A	p.R1076H	TCTAAACGATATC	.	141.0	37.0	92.0	0.0	.	1469	.	.	Atlas-SNP
LONRF1	91694	hgsc.bcm.edu	hg19	8	12580687	12580687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	LONRF1	NM_152271	exon12	c.T2240C	p.V747A	GACAAAACCGACA	.	147.0	33.0	102.0	0.0	.	45	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	50.0	3.0	30.0	0.0	.	384	.	.	Atlas-SNP
FOXE1	2304	hgsc.bcm.edu	hg19	9	100616728	100616728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	FOXE1	NM_004473	exon1	c.G532A	p.A178T	GCCGCCGCCGCCA	.	240.0	14.0	204.0	0.0	.	19	.	.	Atlas-SNP
COL13A1	1305	hgsc.bcm.edu	hg19	10	71665571	71665571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	COL13A1	NM_001130103	exon17	c.G944A	p.G315D	ACCACGGCCGGAA	.	148.0	56.0	164.0	0.0	.	133	.	.	Atlas-SNP
SLIT1	6585	hgsc.bcm.edu	hg19	10	98766408	98766408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	SLIT1	NM_003061	exon32	c.G3411T	p.Q1137H	CCCATTCTGGCAC	.	143.0	55.0	153.0	0.0	.	154	.	.	Atlas-SNP
THRSP	7069	hgsc.bcm.edu	hg19	11	77775039	77775039	+	Missense_Mutation	SNP	C	C	T	rs147579530		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	THRSP,NS,carcinoma,0,2	THRSP	NM_003251	exon1	c.C112T	p.R38W	CTTCTGCGGGACG	.	90.0	9.0	69.0	0.0	.	18	.	C|1.000;T|0.000	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25362794	25362794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	KRAS	NM_004985	exon5	c.G502A	p.E168K	TCTTTTCTTTATG	.	140.0	48.0	104.0	0.0	.	30930	.	.	Atlas-SNP
PRICKLE1	144165	hgsc.bcm.edu	hg19	12	42858348	42858348	+	Silent	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	PRICKLE1	NM_001144882	exon7	c.G1488A	p.R496R	CTGAAGCCTTCTA	.	108.0	26.0	123.0	0.0	.	105	.	.	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53185086	53185086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	KRT3,colon,carcinoma,0,2	KRT3	NM_057088	exon7	c.G1439T	p.R480L	AGCAGCCGCGCCA	.	69.0	3.0	59.0	0.0	.	65	.	.	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	hg19	12	90015489	90015489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	ATP2B1	NM_001001323	exon9	c.A1424C	p.D475A	GTTTTATCTGAAC	.	62.0	26.0	60.0	0.0	.	191	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45605599	45605599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	FANCM	NM_020937	exon1	c.C365T	p.A122V	TTGCCGCCGTGGT	.	158.0	38.0	114.0	0.0	.	225	.	.	Atlas-SNP
C14orf39	317761	hgsc.bcm.edu	hg19	14	60950469	60950469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	C14orf39	NM_174978	exon4	c.C173T	p.T58I	TCATCTGTTGCAT	.	127.0	10.0	99.0	0.0	.	79	.	.	Atlas-SNP
DAPK2	23604	hgsc.bcm.edu	hg19	15	64275864	64275864	+	Missense_Mutation	SNP	G	G	T	rs193279006	bycluster;by1000genomes;alternate_allele	TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	DAPK2	NM_014326	exon3	c.C182A	p.A61E	CGGCTCGCCCGGC	.	60.0	28.0	50.0	0.0	.	31	.	G|1.000;A|0.000	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21123354	21123354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	DNAH3	NM_017539	exon13	c.C1880T	p.A627V	AGGAACGCAGCGA	.	73.0	16.0	56.0	0.0	.	1142	.	.	Atlas-SNP
PAGR1	79447	hgsc.bcm.edu	hg19	16	29828159	29828159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	.	NM_024516	exon1	c.T313A	p.W105R	CAGCCCTGGATGC	.	95.0	15.0	85.0	0.0	.	.	.	.	Atlas-SNP
GAS2L2	246176	hgsc.bcm.edu	hg19	17	34072620	34072620	+	Silent	SNP	G	G	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	GAS2L2	NM_139285	exon6	c.C1896A	p.R632R	CCCACTGCGAGGG	.	96.0	4.0	72.0	0.0	.	94	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975315	38975315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	KRT10	NM_000421	exon7	c.A1472C	p.H491P	CCGCCGTGGCCGC	.	106.0	10.0	67.0	0.0	.	56	.	.	Atlas-SNP
KRT10	3858	hgsc.bcm.edu	hg19	17	38975319	38975319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	KRT10	NM_000421	exon7	c.G1468A	p.G490S	CGTGGCCGCCGCC	.	109.0	10.0	64.0	0.0	.	56	.	.	Atlas-SNP
PRKCA	5578	hgsc.bcm.edu	hg19	17	64302214	64302214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	PRKCA	NM_002737	exon2	c.G174C	p.W58C	TTTCAGGGGGTTT	.	75.0	10.0	56.0	0.0	.	82	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39055854	39055854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	RYR1	NM_000540	exon91	c.A12880G	p.T4294A	GGGGCGACGGCGC	.	13.0	5.0	6.0	0.0	.	708	.	.	Atlas-SNP
ZBTB45	84878	hgsc.bcm.edu	hg19	19	59027809	59027809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	ZBTB45	NM_032792	exon2	c.C1232T	p.T411M	CTGAACGTCTTGC	.	59.0	17.0	36.0	0.0	.	37	.	.	Atlas-SNP
RASSF2	9770	hgsc.bcm.edu	hg19	20	4771204	4771204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	RASSF2	NM_014737	exon7	c.C430T	p.R144C	CACTGCGTGTGCG	.	57.0	19.0	48.0	0.0	.	75	.	.	Atlas-SNP
CDK5RAP1	51654	hgsc.bcm.edu	hg19	20	31973469	31973469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	CDK5RAP1	NM_016408	exon7	c.A863G	p.K288R	GAAAGCTTCTTCA	.	113.0	24.0	82.0	0.0	.	62	.	.	Atlas-SNP
USP11	8237	hgsc.bcm.edu	hg19	X	47104422	47104422	+	Silent	SNP	G	G	A	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	USP11	NM_004651	exon16	c.G2223A	p.P741P	CCAGCCGTACATT	.	72.0	31.0	53.0	0.0	.	93	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142718491	142718491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	SLITRK4	NM_001184750	exon2	c.A434G	p.Y145C	TCAATATACTTGA	.	120.0	19.0	117.0	0.0	.	162	.	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65681239	65681240	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.,1	IGDCC4	NM_020962	exon15	c.2614_2615insC	p.T872fs	.	.	81.0	18.0	82.0	0.0	.	95	.	.	Atlas-INDEL
TGFBR2	7048	hgsc.bcm.edu	hg19	3	30713509	30713509	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	TGFBR2	NM_001024847	exon5	c.908delT	p.I303fs	.	.	159.0	66.0	124.0	0.0	.	139	.	.	Atlas-INDEL
KLF5	688	hgsc.bcm.edu	hg19	13	73649897	73649901	+	Frame_Shift_Del	DEL	GATCG	GATCG	-	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	GATCG	GATCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	KLF5	NM_001730	exon4	c.1246_1250del	p.416_417del	.	.	92.0	11.0	71.0	0.0	.	59	.	.	Atlas-INDEL
NF1	4763	hgsc.bcm.edu	hg19	17	29587388	29587388	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	NF1	NM_001042492	exon34	c.4431delG	p.R1477fs	.	.	45.0	13.0	49.0	0.0	.	1586	.	.	Atlas-INDEL
PPP1R13B	23368	hgsc.bcm.edu	hg19	14	104216135	104216136	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A97K-01A-21D-A382-10	TCGA-ED-A97K-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0f0404ca-e297-4913-86a1-c140b47e98fd	228563d9-a759-4c83-93c8-8ceb4c9e0e9f	.	PPP1R13B	NM_015316	exon8	c.965_966insA	p.I322fs	.	.	78.0	25.0	79.0	0.0	.	72	.	.	Atlas-INDEL
