Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
OR10Z1	128368	hgsc.bcm.edu	hg19	1	158576688	158576688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR10Z1	NM_001004478	exon1	c.C460T	p.L154F	GGATACCTCTTTG	.	171.0	44.0	135.0	0.0	.	99	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158605719	158605719	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SPTA1	NM_003126	exon38	c.G5416C	p.E1806Q	CCAACTCTTTGAG	.	72.0	55.0	48.0	0.0	.	720	.	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	hg19	1	158670099	158670099	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	OR6K2	NM_001005279	exon1	c.C344G	p.T115R	ATAACTGTCAAGA	.	103.0	56.0	90.0	0.0	.	104	.	.	Atlas-SNP
DCAF6	55827	hgsc.bcm.edu	hg19	1	167971772	167971772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DCAF6	NM_001198956	exon8	c.C956T	p.T319I	CAGATACTGGACC	.	237.0	64.0	234.0	0.0	.	99	.	.	Atlas-SNP
SHCBP1L	81626	hgsc.bcm.edu	hg19	1	182873386	182873386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SHCBP1L	NM_030933	exon8	c.G1516A	p.E506K	TTCCTTCACATTT	.	111.0	24.0	75.0	0.0	.	64	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186097385	186097385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HMCN1	NM_031935	exon83	c.C12866T	p.P4289L	CATTGCCCAAATT	.	57.0	23.0	37.0	0.0	.	797	.	.	Atlas-SNP
IFT172	26160	hgsc.bcm.edu	hg19	2	27688641	27688641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	IFT172	NM_015662	exon17	c.A1801C	p.T601P	TGGCTGTTCCAAA	.	67.0	33.0	75.0	0.0	.	119	.	.	Atlas-SNP
ABCG8	64241	hgsc.bcm.edu	hg19	2	44099245	44099245	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCG8	NM_022437	exon7	c.G1095T	p.T365T	AGAGACGAAGGAT	.	75.0	31.0	61.0	0.0	.	98	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168100450	168100450	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIRP2	NM_152381	exon9	c.T2548C	p.L850L	CAGCCATTAGACA	.	135.0	55.0	173.0	0.0	.	914	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168104420	168104420	+	Missense_Mutation	SNP	G	G	T	rs375925351	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	XIRP2	NM_152381	exon9	c.G6518T	p.G2173V	CAGTTGGAGGAAC	.	116.0	55.0	124.0	0.0	.	914	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179560596	179560596	+	Silent	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TTN	NM_001267550	exon114	c.T31203C	p.Y10401Y	ACCTTCATAGACC	.	190.0	85.0	236.0	0.0	.	18412	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198267360	198267360	+	Missense_Mutation	SNP	T	T	G	rs374250186	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	SF3B1,NS,malignant_melanoma,0,27	SF3B1	NM_012433	exon14	c.A1997C	p.K666T	ACAATCTTAATAC	.	128.0	58.0	120.0	0.0	.	1038	.	.	Atlas-SNP
TRAK2	66008	hgsc.bcm.edu	hg19	2	202245316	202245316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAK2	NM_015049	exon16	c.G2695C	p.A899P	CTGGGGCAGCAAA	.	99.0	42.0	118.0	0.0	.	62	.	.	Atlas-SNP
HACL1	26061	hgsc.bcm.edu	hg19	3	15604875	15604875	+	Missense_Mutation	SNP	C	C	G	rs149555880	bycluster;byfrequency;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HACL1	NM_012260	exon16	c.G1694C	p.R565P	GCCTTCCGTGTGG	.	259.0	132.0	327.0	0.0	.	33	.	C|1.000;T|0.000	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19554731	19554731	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KCNH8	NM_144633	exon13	c.C2349T	p.P783P	TGACCCCCCCAAC	.	99.0	31.0	130.0	0.0	.	189	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	bycluster	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	CTNNB1,gallbladder,other,+1,98	CTNNB1	NM_001098209	exon3	c.C122T	p.T41I	CCACTACCACAGC	.	111.0	53.0	121.0	0.0	.	4904	.	.	Atlas-SNP
TRAIP	10293	hgsc.bcm.edu	hg19	3	49867199	49867199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRAIP	NM_005879	exon13	c.G1087A	p.E363K	GGGACTCCTGCAG	.	19.0	11.0	31.0	0.0	.	47	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	hg19	3	64582656	64582656	+	Silent	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ADAMTS9	NM_182920	exon27	c.C4029G	p.T1343T	AGCACAGGTACTG	.	60.0	33.0	72.0	0.0	.	206	.	.	Atlas-SNP
CADM2	253559	hgsc.bcm.edu	hg19	3	85984981	85984981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CADM2	NM_001167675	exon7	c.G765T	p.L255F	AATTTTGACTTGT	.	213.0	93.0	218.0	0.0	.	195	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30726038	30726038	+	Silent	SNP	T	T	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PCDH7	NM_032457	exon1	c.T2994A	p.S998S	CAAATCTAGTTCC	.	64.0	22.0	42.0	0.0	.	215	.	.	Atlas-SNP
SMIM14	201895	hgsc.bcm.edu	hg19	4	39553765	39553765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_174921	exon5	c.C281T	p.P94L	GGAGCTGGTGGAT	.	205.0	88.0	251.0	1.0	.	.	.	.	Atlas-SNP
GABRA2	2555	hgsc.bcm.edu	hg19	4	46390684	46390684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GABRA2	NM_000807	exon2	c.C40A	p.L14I	CAAAAAGCAGGAA	.	309.0	139.0	302.0	1.0	.	134	.	.	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	hg19	4	73990633	73990633	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANKRD17	NM_032217	exon18	c.G3489A	p.Q1163Q	TACCTCCTGTCTT	.	45.0	18.0	57.0	0.0	.	214	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74279198	74279198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ALB	NM_000477	exon8	c.G905T	p.C302F	AGGAATGCTGTGA	.	69.0	30.0	62.0	0.0	.	132	.	.	Atlas-SNP
ANXA3	306	hgsc.bcm.edu	hg19	4	79494388	79494388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ANXA3	NM_005139	exon3	c.G70T	p.A24S	GTGGATGCTGAAG	.	27.0	13.0	43.0	0.0	.	35	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183267884	183267884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001080477	exon2	c.C313T	p.L105F	ATGGGGCTCCCTC	.	71.0	31.0	92.0	0.0	.	.	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16701447	16701447	+	Silent	SNP	T	T	C	rs372673284	alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MYO10	NM_012334	exon25	c.A3057G	p.R1019R	ACTTGTTCGCTGG	.	61.0	28.0	57.0	0.0	.	198	.	.	Atlas-SNP
GDNF	2668	hgsc.bcm.edu	hg19	5	37815756	37815756	+	Silent	SNP	G	G	A	rs121918536	bycluster;alternate_allele	TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GDNF	NM_001190468	exon3	c.C684T	p.I228I	GAGTCAGATACAT	.	93.0	25.0	112.0	0.0	.	56	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54637586	54637586	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SKIV2L2	NM_015360	exon7	c.T768C	p.Y256Y	TCATTATATGAGA	.	102.0	42.0	99.0	0.0	.	104	.	.	Atlas-SNP
GRAMD3	65983	hgsc.bcm.edu	hg19	5	125819257	125819257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GRAMD3	NM_001146319	exon9	c.A883C	p.N295H	TCTGAGAACTCTC	.	43.0	18.0	39.0	0.0	.	30	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176562164	176562164	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NSD1	NM_022455	exon2	c.G60A	p.V20V	TCCAGTGAATTTA	.	56.0	18.0	63.0	0.0	.	416	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33144048	33144048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	COL11A2	NM_080680	exon28	c.T2202A	p.H734Q	ACCCTTATGACCC	.	82.0	36.0	81.0	0.0	.	124	.	.	Atlas-SNP
SLC35B2	347734	hgsc.bcm.edu	hg19	6	44223037	44223037	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SLC35B2	NM_178148	exon4	c.C705T	p.Y235Y	GTGTTCGTAGCTG	.	63.0	28.0	77.0	0.0	.	40	.	.	Atlas-SNP
FBXL4	26235	hgsc.bcm.edu	hg19	6	99322272	99322272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FBXL4	NM_012160	exon9	c.C1748A	p.S583Y	TTACAAGATTCCA	.	108.0	49.0	116.0	0.0	.	54	.	.	Atlas-SNP
RPF2	84154	hgsc.bcm.edu	hg19	6	111318428	111318428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPF2	NM_032194	exon5	c.G277A	p.G93S	ATGTTTGGCTCCC	.	95.0	36.0	122.0	0.0	.	26	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151161944	151161944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHG1	NM_001029884	exon17	c.T4070G	p.L1357R	ACTATCTTTGGAG	.	65.0	26.0	94.0	0.0	.	97	.	.	Atlas-SNP
RSPH10B	222967	hgsc.bcm.edu	hg19	7	5967916	5967916	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RSPH10B	NM_173565	exon20	c.A2343G	p.E781E	GATAGCTTCTTCA	.	465.0	135.0	667.0	0.0	.	28	.	.	Atlas-SNP
MPP6	51678	hgsc.bcm.edu	hg19	7	24705683	24705683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MPP6	NM_016447	exon9	c.G927C	p.M309I	AAAGATGATGTAT	.	87.0	40.0	76.0	0.0	.	62	.	.	Atlas-SNP
ABCB4	5244	hgsc.bcm.edu	hg19	7	87051459	87051459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ABCB4	NM_018850	exon18	c.C2294T	p.S765F	AAAAAAGAAATAA	.	273.0	76.0	195.0	0.0	.	177	.	.	Atlas-SNP
PVRIG	79037	hgsc.bcm.edu	hg19	7	99818613	99818613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PVRIG	NM_024070	exon6	c.C720A	p.C240X	CAGCTGCCGCCCA	.	102.0	30.0	100.0	0.0	.	20	.	.	Atlas-SNP
PNPLA8	50640	hgsc.bcm.edu	hg19	7	108131857	108131857	+	Silent	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PNPLA8	NM_001256008	exon7	c.T1680A	p.P560P	TACCTTAGGACAT	.	147.0	56.0	115.0	0.0	.	82	.	.	Atlas-SNP
C9orf170	401535	hgsc.bcm.edu	hg19	9	89763702	89763702	+	Silent	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	C9orf170	NM_001001709	exon1	c.G57T	p.G19G	CCTGGGGGTGTGG	.	27.0	14.0	34.0	0.0	.	17	.	.	Atlas-SNP
PSAP	5660	hgsc.bcm.edu	hg19	10	73610968	73610968	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PSAP	NM_001042466	exon1	c.T11A	p.L4H	AGGAAGAGGGCGT	.	56.0	32.0	54.0	0.0	.	43	.	.	Atlas-SNP
PLEKHA1	59338	hgsc.bcm.edu	hg19	10	124166157	124166157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PLEKHA1	NM_021622	exon5	c.G310T	p.V104L	GAATGGGTAAATG	.	139.0	62.0	149.0	0.0	.	33	.	.	Atlas-SNP
MOB2	81532	hgsc.bcm.edu	hg19	11	1491556	1491556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MOB2	NM_001172223	exon5	c.G653A	p.R218Q	AACTCCCGAGCAA	.	61.0	24.0	86.0	0.0	.	23	.	.	Atlas-SNP
HNRNPUL2	221092	hgsc.bcm.edu	hg19	11	62491884	62491884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HNRNPUL2	NM_001079559	exon2	c.A553C	p.S185R	TTTCACTATCCTG	.	88.0	42.0	122.0	0.0	.	41	.	.	Atlas-SNP
MRPL21	219927	hgsc.bcm.edu	hg19	11	68664055	68664055	+	Silent	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MRPL21	NM_181514	exon4	c.G324C	p.V108V	AGAGGTCACCTTC	.	69.0	30.0	77.0	0.0	.	13	.	.	Atlas-SNP
NOX4	50507	hgsc.bcm.edu	hg19	11	89069054	89069054	+	Silent	SNP	C	C	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOX4	NM_016931	exon17	c.G1575C	p.R525R	TTTCCACCGAGGA	.	418.0	181.0	455.0	0.0	.	101	.	.	Atlas-SNP
TMTC1	83857	hgsc.bcm.edu	hg19	12	29659790	29659790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMTC1	NM_001193451	exon18	c.G2638A	p.D880N	TTTGATCCTTTTC	.	119.0	47.0	149.0	0.0	.	147	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53071186	53071186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KRT1	NM_006121	exon5	c.G1042T	p.D348Y	TGCTGTCCAGGTC	.	57.0	26.0	64.0	0.0	.	110	.	.	Atlas-SNP
RAB3IP	117177	hgsc.bcm.edu	hg19	12	70149324	70149324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RAB3IP	NM_175623	exon2	c.T184G	p.S62A	CACCCTTCAGCTT	.	106.0	37.0	84.0	0.0	.	48	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80933705	80933705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PTPRQ	NM_001145026	exon17	c.G2620A	p.V874I	ATTGAAGTATACA	.	62.0	26.0	80.0	0.0	.	119	.	.	Atlas-SNP
TMPO	7112	hgsc.bcm.edu	hg19	12	98938066	98938066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TMPO	NM_001032283	exon5	c.G722A	p.G241E	AAGGCGGACCTCT	.	112.0	57.0	117.0	0.0	.	111	.	.	Atlas-SNP
KIAA1033	23325	hgsc.bcm.edu	hg19	12	105557965	105557965	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	KIAA1033	NM_015275	exon31	c.G3234A	p.E1078E	TAGAGAGAAATAC	.	77.0	31.0	106.0	0.0	.	83	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124377824	124377824	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH10	NM_207437	exon52	c.C8686T	p.L2896L	TCTATCCTGAGTC	.	67.0	28.0	90.0	0.0	.	888	.	.	Atlas-SNP
ZMYM2	7750	hgsc.bcm.edu	hg19	13	20567272	20567272	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZMYM2	NM_001190964	exon4	c.G60A	p.G20G	ATTAGGGAGTACG	.	123.0	54.0	99.0	0.0	.	191	.	.	Atlas-SNP
FARP1	10160	hgsc.bcm.edu	hg19	13	98896898	98896898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	FARP1	NM_001001715	exon3	c.A325G	p.T109A	TCTTACACAAACT	.	57.0	32.0	57.0	0.0	.	207	.	.	Atlas-SNP
NOVA1	4857	hgsc.bcm.edu	hg19	14	26917704	26917704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	NOVA1	NM_002515	exon5	c.C985A	p.L329I	TGTTGAGATTATA	.	20.0	11.0	26.0	0.0	.	146	.	.	Atlas-SNP
TMEM260	0	hgsc.bcm.edu	hg19	14	57070549	57070549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_017799	exon4	c.G361A	p.A121T	TCATCTGCTGGAG	.	174.0	67.0	223.0	0.0	.	.	.	.	Atlas-SNP
SYT16	83851	hgsc.bcm.edu	hg19	14	62550920	62550920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SYT16	NM_031914	exon5	c.G1441T	p.G481W	AGTGGAGGGTCTC	.	71.0	26.0	81.0	0.0	.	144	.	.	Atlas-SNP
PPP2R5E	5529	hgsc.bcm.edu	hg19	14	63858560	63858560	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	PPP2R5E	NM_006246	exon10	c.G929A	p.W310X	TTAGGCCAAAATT	.	88.0	34.0	121.0	0.0	.	43	.	.	Atlas-SNP
STON2	85439	hgsc.bcm.edu	hg19	14	81737182	81737182	+	Silent	SNP	A	A	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	STON2	NM_001256430	exon7	c.T2445G	p.L815L	GAGTTCAAGGTGG	.	34.0	11.0	46.0	0.0	.	94	.	.	Atlas-SNP
RPS6KA5	9252	hgsc.bcm.edu	hg19	14	91338575	91338575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	RPS6KA5	NM_004755	exon17	c.C2252G	p.T751S	GTACTGGTGCTAG	.	224.0	108.0	215.0	0.0	.	135	.	.	Atlas-SNP
DUOXA2	405753	hgsc.bcm.edu	hg19	15	45408389	45408389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DUOXA2	NM_207581	exon3	c.C273A	p.S91R	CTTCAGCGCAGCG	.	43.0	26.0	41.0	0.0	.	38	.	.	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	hg19	16	30977205	30977205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SETD1A	NM_014712	exon8	c.G2003T	p.R668L	TGGACCGACTTGG	.	113.0	48.0	113.0	0.0	.	143	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7734001	7734001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	DNAH2	NM_020877	exon78	c.A12071G	p.Y4024C	GCCTCTATCTCGA	.	62.0	24.0	99.0	0.0	.	498	.	.	Atlas-SNP
DLX4	1748	hgsc.bcm.edu	hg19	17	48046980	48046980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	DLX4,caecum,carcinoma,0,1	DLX4	NM_138281	exon1	c.C148T	p.P50S	TCCAGGCCGTATG	.	26.0	12.0	33.0	0.0	.	25	.	.	Atlas-SNP
VEZF1	7716	hgsc.bcm.edu	hg19	17	56056601	56056601	+	Silent	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	VEZF1	NM_007146	exon5	c.A1050G	p.Q350Q	TTGTTGTTGTTGC	.	112.0	10.0	84.0	0.0	.	50	.	.	Atlas-SNP
CD300LF	146722	hgsc.bcm.edu	hg19	17	72700898	72700898	+	Missense_Mutation	SNP	C	C	A	rs146550147		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CD300LF	NM_139018	exon2	c.G101T	p.G34V	AAGGAGCCCCGCT	.	84.0	35.0	90.0	0.0	.	55	.	C|1.000;A|0.000	Atlas-SNP
SLC25A52	147407	hgsc.bcm.edu	hg19	18	29339767	29339767	+	Silent	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	NM_001034172	exon1	c.C888T	p.I296I	TGCATTGATTATG	.	131.0	46.0	132.0	0.0	.	.	.	.	Atlas-SNP
SERPINB13	5275	hgsc.bcm.edu	hg19	18	61255920	61255920	+	Missense_Mutation	SNP	G	G	A	rs139825462		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	SERPINB13,NS,carcinoma,0,3	SERPINB13	NM_012397	exon2	c.G19A	p.V7I	GGCGCCGTCAGCA	.	128.0	68.0	156.0	1.0	.	51	.	G|1.000;A|0.000	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	hg19	18	76754127	76754127	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SALL3	NM_171999	exon2	c.C2136T	p.C712C	GATCTGCGGCCGC	.	21.0	9.0	33.0	0.0	.	162	.	.	Atlas-SNP
CLEC17A	388512	hgsc.bcm.edu	hg19	19	14705334	14705334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CLEC17A	NM_207390	exon5	c.A283T	p.S95C	GGTTCAAGTGCTC	.	66.0	31.0	57.0	0.0	.	27	.	.	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	hg19	19	17950393	17950393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	JAK3	NM_000215	exon10	c.G1334A	p.R445Q	TGGGGTCGGCTGA	.	20.0	8.0	15.0	0.0	.	341	.	.	Atlas-SNP
ZNF676	163223	hgsc.bcm.edu	hg19	19	22363944	22363944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF676	NM_001001411	exon3	c.C575A	p.T192N	TCTCCAGTATGAA	.	55.0	29.0	46.0	0.0	.	146	.	.	Atlas-SNP
HIPK4	147746	hgsc.bcm.edu	hg19	19	40895613	40895613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HIPK4	NM_144685	exon1	c.A197G	p.D66G	TCAGGGTCTAGGC	.	70.0	33.0	118.0	0.0	.	100	.	.	Atlas-SNP
TBC1D17	79735	hgsc.bcm.edu	hg19	19	50387721	50387721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	TBC1D17,NS,carcinoma,0,1	TBC1D17	NM_024682	exon12	c.G1249A	p.V417I	GGCTACGTCCAGG	.	80.0	39.0	87.0	0.0	.	39	.	.	Atlas-SNP
ZSCAN5A	79149	hgsc.bcm.edu	hg19	19	56735066	56735066	+	Silent	SNP	T	T	C	rs199886337		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZSCAN5A	NM_024303	exon3	c.A522G	p.P174P	TTCCCCTGGACGC	.	32.0	16.0	44.0	0.0	.	118	.	T|0.999;C|0.001	Atlas-SNP
ZNF71	58491	hgsc.bcm.edu	hg19	19	57133787	57133787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	ZNF71	NM_021216	exon3	c.G1132T	p.G378C	CACACCGGCGAGA	.	78.0	30.0	118.0	0.0	.	69	.	.	Atlas-SNP
SCARF2	91179	hgsc.bcm.edu	hg19	22	20784723	20784723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	SCARF2	NM_182895	exon6	c.G1195A	p.G399R	GGGGCCCGTGGAC	.	22.0	14.0	19.0	0.0	.	23	.	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38120914	38120914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	TRIOBP	NM_001039141	exon7	c.A2351G	p.N784S	CTCCCAATAGAGC	.	138.0	69.0	148.0	0.0	.	262	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41560092	41560092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EP300	NM_001429	exon22	c.A3764T	p.H1255L	AGATGCATCAGAT	.	217.0	98.0	232.0	0.0	.	367	.	.	Atlas-SNP
CPT1B	1375	hgsc.bcm.edu	hg19	22	51010728	51010728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	CPT1B	NM_001145135	exon12	c.C1362G	p.D454E	GGATTTGTCAAAC	.	34.0	16.0	54.0	0.0	.	61	.	.	Atlas-SNP
GDPD2	54857	hgsc.bcm.edu	hg19	X	69644840	69644840	+	Silent	SNP	C	C	T	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GDPD2	NM_017711	exon2	c.C6T	p.A2A	CATGGCCGAGTCC	.	46.0	43.0	46.0	0.0	.	80	.	.	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10390	10390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	ENST00000361227	exon1	c.T332C	p.L111S	AAGGATTAGACTG	.	401.0	53.0	147.0	0.0	.	.	.	.	Atlas-SNP
EIF3C	8663	hgsc.bcm.edu	hg19	16	28734840	28734840	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EIF3C	NM_001199142	exon10	c.1007delA	p.E336fs	.	.	729.0	112.0	801.0	0.0	.	8	.	.	Atlas-INDEL
EIF3C	8663	hgsc.bcm.edu	hg19	16	28403104	28403104	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	EIF3C	NM_001267574	exon9	c.1013delT	p.L338fs	.	.	644.0	67.0	799.0	0.0	.	8	.	.	Atlas-INDEL
MAPKAPK2	9261	hgsc.bcm.edu	hg19	1	206902164	206902166	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	MAPKAPK2	NM_004759	exon2	c.388_390del	p.130_130del	.	.	62.0	15.0	73.0	0.0	.	45	.	.	Atlas-Indel,Pindel
HMBS	3145	hgsc.bcm.edu	hg19	11	118963906	118963907	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	HMBS	NM_000190	exon14	c.998_999del	p.333_333del	.	.	31.0	14.0	26.0	0.0	.	27	.	.	Atlas-INDEL
DCN	1634	hgsc.bcm.edu	hg19	12	91558424	91558424	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	DCN,NS,carcinoma,0,3	DCN	NM_133506	exon2	c.283delG	p.E95fs	.	.	145.0	60.0	203.0	0.0	.	61	.	.	Atlas-Indel,Pindel
GABRA2	2555	hgsc.bcm.edu	hg19	4	46390679	46390679	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	GABRA2	NM_001114175	exon1	c.46delG	p.V16fs	.	.	311.0	137.0	306.0	0.0	.	134	.	.	Atlas-Indel,Pindel
MIR620	693205	hgsc.bcm.edu	hg19	12	116586417	116586420	+	RNA	DEL	TATA	TATA	-	novel		TCGA-EP-A26S-01A-11D-A16V-10	TCGA-EP-A26S-10A-01D-A16V-10	TATA	TATA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	463bf060-8ba6-4a73-8173-172025f7b527	b2075602-828f-4788-9c30-978a3ca744bd	.	.	.	.	.	.	.	.	70.0	11.0	55.0	0.0	.	.	.	.	Pindel
