Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ACAP3	116983	hgsc.bcm.edu	hg19	1	1231249	1231249	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACAP3	NM_030649	exon18	c.A1572G	p.A524A	GGCTGGTGCCATG	.	83.0	4.0	110.0	0.0	.	87	.	.	Atlas-SNP
NADK	65220	hgsc.bcm.edu	hg19	1	1685559	1685559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NADK	NM_001198994	exon12	c.G1467T	p.M489I	CGTGATCATGATG	.	117.0	5.0	190.0	0.0	.	79	.	.	Atlas-SNP
PANK4	55229	hgsc.bcm.edu	hg19	1	2451799	2451799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PANK4	NM_018216	exon5	c.A661G	p.T221A	AGAAGGTGCCGCC	.	82.0	4.0	104.0	0.0	.	64	.	.	Atlas-SNP
TPRG1L	127262	hgsc.bcm.edu	hg19	1	3544177	3544177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TPRG1L	NM_182752	exon4	c.C584A	p.P195Q	AACACCCGATGGC	.	95.0	4.0	118.0	0.0	.	24	.	.	Atlas-SNP
H6PD	9563	hgsc.bcm.edu	hg19	1	9324411	9324411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	H6PD,NS,carcinoma,0,1	H6PD	NM_004285	exon5	c.A1859G	p.D620G	TGGTTGACGAGCG	.	60.0	4.0	109.0	2.0	.	71	.	.	Atlas-SNP
TMEM201	199953	hgsc.bcm.edu	hg19	1	9662234	9662234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM201	NM_001010866	exon6	c.T1064C	p.L355P	ACACGCTCAAGTT	.	97.0	4.0	185.0	0.0	.	63	.	.	Atlas-SNP
MTOR	2475	hgsc.bcm.edu	hg19	1	11186822	11186822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MTOR	NM_004958	exon46	c.C6383T	p.P2128L	AGTTTTGGGGAAA	.	93.0	4.0	125.0	0.0	.	327	.	.	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	hg19	1	12516140	12516140	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13D	NM_015378	exon66	c.C12420A	p.A4140A	TGCAGCCACAAGT	.	62.0	4.0	84.0	0.0	.	316	.	.	Atlas-SNP
CROCC	9696	hgsc.bcm.edu	hg19	1	17265407	17265407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CROCC	NM_014675	exon12	c.G1378A	p.V460I	CAGGCCGTCTTGT	.	80.0	4.0	129.0	0.0	.	185	.	.	Atlas-SNP
PADI4	23569	hgsc.bcm.edu	hg19	1	17674451	17674451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PADI4	NM_012387	exon10	c.G1063T	p.G355C	GAGATCGGCTACA	.	65.0	4.0	119.0	0.0	.	70	.	.	Atlas-SNP
KLHDC7A	127707	hgsc.bcm.edu	hg19	1	18807714	18807714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHDC7A	NM_152375	exon1	c.C239T	p.P80L	GGGGGCCAAGACG	.	97.0	4.0	125.0	0.0	.	60	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19407897	19407897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon103	c.G15179A	p.R5060Q	AGCCTCCGCAAGA	.	103.0	11.0	93.0	0.0	.	415	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19433073	19433073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon83	c.G12383T	p.W4128L	CGCAGCCAGTTGT	.	30.0	4.0	46.0	0.0	.	415	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19501462	19501462	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBR4	NM_020765	exon21	c.C2839A	p.R947R	CAAGTCGGTTCAA	.	109.0	5.0	133.0	0.0	.	415	.	.	Atlas-SNP
PLA2G2F	64600	hgsc.bcm.edu	hg19	1	20466705	20466705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLA2G2F	NM_022819	exon2	c.G163A	p.G55S	CTTGCTGGCAGCG	.	64.0	4.0	108.0	0.0	.	28	.	.	Atlas-SNP
PINK1	65018	hgsc.bcm.edu	hg19	1	20971140	20971140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PINK1,NS,carcinoma,0,1	PINK1	NM_032409	exon4	c.C934T	p.R312W	CATGGCCGGACGC	.	47.0	2.0	57.0	0.0	.	37	.	.	Atlas-SNP
ALPL	249	hgsc.bcm.edu	hg19	1	21902359	21902359	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALPL	NM_000478	exon10	c.G1131T	p.A377A	CACTGCGGACCAT	.	108.0	5.0	129.0	0.0	.	50	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22170757	22170757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSPG2	NM_005529	exon65	c.T8500C	p.S2834P	AGGAGGAGGGCTC	.	105.0	5.0	184.0	0.0	.	311	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22175467	22175467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSPG2	NM_005529	exon58	c.G7504A	p.V2502M	GGCACACGTACTC	.	97.0	4.0	130.0	0.0	.	311	.	.	Atlas-SNP
EPHB2	2048	hgsc.bcm.edu	hg19	1	23110887	23110887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPHB2	NM_004442	exon3	c.G129T	p.W43C	ACAGTGGGAAGAG	.	97.0	4.0	151.0	0.0	.	257	.	.	Atlas-SNP
TCEA3	6920	hgsc.bcm.edu	hg19	1	23710837	23710837	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCEA3	NM_003196	exon11	c.1038+2T>C	.	ATACAGACCTTCC	.	55.0	4.0	91.0	0.0	.	20	.	.	Atlas-SNP
FUCA1	2517	hgsc.bcm.edu	hg19	1	24186295	24186295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FUCA1	NM_000147	exon4	c.C761A	p.P254H	TTGACAGGGCTGT	.	73.0	4.0	90.0	0.0	.	24	.	.	Atlas-SNP
WDTC1	23038	hgsc.bcm.edu	hg19	1	27627864	27627864	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDTC1	NM_001276252	exon13	c.A1380G	p.K460K	CTTCAAAGGGAAA	.	74.0	4.0	116.0	0.0	.	69	.	.	Atlas-SNP
AHDC1	27245	hgsc.bcm.edu	hg19	1	27876114	27876114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AHDC1	NM_001029882	exon6	c.G2513A	p.G838D	AAGTAGCCGGTGA	.	99.0	4.0	170.0	0.0	.	98	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34033348	34033348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD2	NM_052896	exon54	c.C8156A	p.P2719H	GGCTCAGGAGTCC	.	125.0	5.0	142.0	0.0	.	946	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34080170	34080170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CSMD2,caecum,carcinoma,0,1	CSMD2	NM_052896	exon40	c.G5947T	p.G1983C	GGAAGCCGGGGCT	.	61.0	3.0	71.0	1.0	.	946	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34089068	34089068	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD2	NM_052896	exon37	c.5506-2A>G	.	TGGATCTGGGAAG	.	113.0	5.0	136.0	0.0	.	946	.	.	Atlas-SNP
MAP7D1	55700	hgsc.bcm.edu	hg19	1	36636731	36636731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP7D1	NM_018067	exon2	c.A206G	p.E69G	AACCAGAGAGCCC	.	77.0	4.0	119.0	0.0	.	62	.	.	Atlas-SNP
SH3D21	79729	hgsc.bcm.edu	hg19	1	36785547	36785547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SH3D21	NM_001162530	exon14	c.T1283C	p.I428T	CTTCTATCCCAGA	.	69.0	5.0	83.0	0.0	.	73	.	.	Atlas-SNP
KCNQ4	9132	hgsc.bcm.edu	hg19	1	41285131	41285131	+	Missense_Mutation	SNP	T	T	C	rs80358276	bycluster;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNQ4	NM_004700	exon5	c.T821C	p.L274P	ACTCGCTCTGGTG	.	137.0	6.0	237.0	0.0	.	58	.	.	Atlas-SNP
PTPRF	5792	hgsc.bcm.edu	hg19	1	44083444	44083444	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PTPRF,colon,carcinoma,0,1	PTPRF	NM_002840	exon25	c.C4233A	p.I1411I	CTACATCGATGGC	.	116.0	6.0	144.0	0.0	.	172	.	.	Atlas-SNP
RNF220	55182	hgsc.bcm.edu	hg19	1	45115396	45115396	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF220	NM_018150	exon13	c.A1509G	p.E503E	ACTTGAACGGCAG	.	97.0	4.0	122.0	0.0	.	56	.	.	Atlas-SNP
MUTYH	4595	hgsc.bcm.edu	hg19	1	45797951	45797951	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MUTYH,NS,chondrosarcoma,0,1	MUTYH	NM_001128425	exon10	c.C820A	p.R274R	CTGGCCGGGCTGG	.	51.0	3.0	87.0	0.0	.	38	.	.	Atlas-SNP
CYP4B1	1580	hgsc.bcm.edu	hg19	1	47264911	47264911	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CYP4B1,extremity,malignant_melanoma,0,1	CYP4B1	NM_000779	exon1	c.G158A	p.W53X	CCCACTGGCTTTT	.	70.0	25.0	137.0	0.0	.	81	.	.	Atlas-SNP
C8B	732	hgsc.bcm.edu	hg19	1	57399139	57399139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C8B	NM_000066	exon10	c.T1421C	p.V474A	GCTGTCACTAGTT	.	88.0	5.0	100.0	0.0	.	107	.	.	Atlas-SNP
KANK4	163782	hgsc.bcm.edu	hg19	1	62739434	62739434	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KANK4	NM_181712	exon3	c.C1342A	p.R448R	CTCCTCGGTGCCC	.	113.0	5.0	140.0	0.0	.	135	.	.	Atlas-SNP
PGM1	5236	hgsc.bcm.edu	hg19	1	64114221	64114221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PGM1	NM_001172818	exon8	c.G1232T	p.W411L	GACTGTGGGCTGT	.	59.0	4.0	70.0	0.0	.	75	.	.	Atlas-SNP
DIRAS3	9077	hgsc.bcm.edu	hg19	1	68512864	68512864	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DIRAS3	NM_004675	exon2	c.C117T	p.R39R	CACGACGCGGTAA	.	106.0	30.0	147.0	0.0	.	31	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70504859	70504859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRC7	NM_020794	exon19	c.C3238A	p.P1080T	GGATACCCACCGA	.	93.0	4.0	121.0	0.0	.	400	.	.	Atlas-SNP
SRSF11	9295	hgsc.bcm.edu	hg19	1	70710417	70710417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRSF11	NM_001190987	exon9	c.G851T	p.R284L	GGAGTCGGCGACG	.	115.0	6.0	129.0	0.0	.	68	.	.	Atlas-SNP
LPAR3	23566	hgsc.bcm.edu	hg19	1	85331068	85331068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPAR3	NM_012152	exon2	c.G736T	p.G246W	ACCTACCTAAGAC	.	71.0	4.0	118.0	0.0	.	53	.	.	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	hg19	1	86340972	86340972	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL24A1	NM_152890	exon34	c.A3072G	p.E1024E	ACCTGGTTCACCT	.	108.0	5.0	220.0	0.0	.	202	.	.	Atlas-SNP
GBP7	388646	hgsc.bcm.edu	hg19	1	89607318	89607318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GBP7	NM_207398	exon9	c.T1379C	p.L460P	CTCTGGAGGACCT	.	100.0	4.0	148.0	0.0	.	57	.	.	Atlas-SNP
GLMN	11146	hgsc.bcm.edu	hg19	1	92712653	92712653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	GLMN,NS,carcinoma,0,1	GLMN	NM_053274	exon18	c.A1634G	p.E545G	GGGATCTCTTCTC	.	24.0	2.0	47.0	0.0	.	37	.	.	Atlas-SNP
CCDC18	343099	hgsc.bcm.edu	hg19	1	93677670	93677670	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC18	NM_206886	exon11	c.A1347G	p.A449A	GCTTGCAATAAAA	.	98.0	4.0	142.0	0.0	.	93	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94520858	94520858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA4	NM_000350	exon16	c.C2396A	p.P799Q	GCCACCGGAGACA	.	64.0	4.0	69.0	0.0	.	275	.	.	Atlas-SNP
LPPR5	0	hgsc.bcm.edu	hg19	1	99418828	99418828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001037317	exon3	c.G419T	p.G140V	ACTTGTCCAGCAT	.	79.0	4.0	91.0	0.0	.	.	.	.	Atlas-SNP
PALMD	54873	hgsc.bcm.edu	hg19	1	100154877	100154877	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PALMD	NM_017734	exon7	c.C1061A	p.S354X	AAGAATCGAATGT	.	91.0	5.0	92.0	0.0	.	64	.	.	Atlas-SNP
ATXN7L2	127002	hgsc.bcm.edu	hg19	1	110032963	110032963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATXN7L2	NM_153340	exon9	c.G1307T	p.C436F	GGTTCTGCTCAGC	.	70.0	4.0	75.0	0.0	.	60	.	.	Atlas-SNP
KCNA10	3744	hgsc.bcm.edu	hg19	1	111061042	111061042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNA10	NM_005549	exon1	c.A368G	p.D123G	ATGGAGTCAAAGA	.	29.0	5.0	42.0	0.0	.	92	.	.	Atlas-SNP
CHI3L2	1117	hgsc.bcm.edu	hg19	1	111773369	111773369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHI3L2	NM_004000	exon3	c.G76A	p.A26T	GGATCTGCCTACA	.	60.0	4.0	77.0	0.0	.	38	.	.	Atlas-SNP
CHIA	27159	hgsc.bcm.edu	hg19	1	111857977	111857977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHIA	NM_201653	exon6	c.G400T	p.G134W	TTTGACGGGCTGG	.	91.0	4.0	133.0	0.0	.	115	.	.	Atlas-SNP
HIPK1	204851	hgsc.bcm.edu	hg19	1	114499248	114499248	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIPK1	NM_152696	exon6	c.1408-1G>T	.	TTGGAAGGTGAAT	.	60.0	4.0	95.0	0.0	.	195	.	.	Atlas-SNP
ATP1A1	476	hgsc.bcm.edu	hg19	1	116942136	116942136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP1A1	NM_001160233	exon18	c.G2543T	p.R848L	ATGAGCGGCTGAT	.	92.0	4.0	116.0	0.0	.	87	.	.	Atlas-SNP
VTCN1	79679	hgsc.bcm.edu	hg19	1	117690333	117690333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VTCN1	NM_024626	exon5	c.T796C	p.F266L	TGGCAAAGAAAGA	.	58.0	4.0	94.0	0.0	.	26	.	.	Atlas-SNP
VPS72	6944	hgsc.bcm.edu	hg19	1	151150609	151150609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS72	NM_001271087	exon5	c.G575T	p.R192L	TCGAGCCGCTCAT	.	78.0	4.0	71.0	0.0	.	31	.	.	Atlas-SNP
RORC	6097	hgsc.bcm.edu	hg19	1	151779983	151779983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RORC	NM_005060	exon11	c.A1522G	p.T508A	TTTCAGTGCTGAA	.	76.0	4.0	73.0	0.0	.	70	.	.	Atlas-SNP
SPRR2A	6700	hgsc.bcm.edu	hg19	1	153029108	153029108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPRR2A	NM_005988	exon2	c.C104A	p.P35H	GGGCAGGGCTCAG	.	183.0	34.0	183.0	0.0	.	9	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153903278	153903278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DENND4B	NM_014856	exon26	c.G4170T	p.L1390F	CAGTGCCAAACTA	.	100.0	4.0	49.0	0.0	.	210	.	.	Atlas-SNP
FDPS	2224	hgsc.bcm.edu	hg19	1	155289468	155289468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FDPS	NM_001135821	exon9	c.T913C	p.F305L	GAGTTCTTTCAGA	.	88.0	4.0	118.0	0.0	.	41	.	.	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	hg19	1	156280946	156280946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCT3	NM_005998	exon12	c.G1196A	p.R399H	ACATTGCGACACA	.	157.0	23.0	141.0	0.0	.	61	.	.	Atlas-SNP
RRNAD1	51093	hgsc.bcm.edu	hg19	1	156703277	156703277	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RRNAD1	NM_015997	exon5	c.C601T	p.Q201X	CTTCTGCAGGCTC	.	75.0	4.0	77.0	0.0	.	39	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158641151	158641151	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPTA1	NM_003126	exon12	c.C1581A	p.A527A	TTCCTGGGCAGTA	.	203.0	9.0	141.0	0.0	.	720	.	.	Atlas-SNP
APCS	325	hgsc.bcm.edu	hg19	1	159558025	159558025	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APCS	NM_001639	exon2	c.A199T	p.S67C	GCCTACAGCCTCT	.	179.0	14.0	90.0	0.0	.	48	.	.	Atlas-SNP
CD84	8832	hgsc.bcm.edu	hg19	1	160519720	160519720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CD84_ENST00000311224,NS,carcinoma,0,2	CD84	NM_001184879	exon7	c.A959G	p.Q320R	GCAAACTGCACTT	.	69.0	3.0	90.0	0.0	.	71	.	.	Atlas-SNP
CD48	962	hgsc.bcm.edu	hg19	1	160648872	160648872	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD48	NM_001778	exon4	c.G702A	p.V234V	GGTGGGCACCGTG	.	136.0	44.0	134.0	0.0	.	31	.	.	Atlas-SNP
PPOX	5498	hgsc.bcm.edu	hg19	1	161138329	161138329	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPOX	NM_000309	exon6	c.C579A	p.T193T	GCAAACCCATCGT	.	94.0	4.0	106.0	0.0	.	34	.	.	Atlas-SNP
DDR2	4921	hgsc.bcm.edu	hg19	1	162743270	162743270	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDR2	NM_001014796	exon15	c.T1740C	p.C580C	TCTCTGTGAAGTG	.	117.0	5.0	112.0	0.0	.	228	.	.	Atlas-SNP
ALDH9A1	223	hgsc.bcm.edu	hg19	1	165664622	165664622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALDH9A1	NM_000696	exon2	c.C194A	p.A65D	AAAGTAGCTATCA	.	96.0	4.0	98.0	0.0	.	75	.	.	Atlas-SNP
DPT	1805	hgsc.bcm.edu	hg19	1	168670334	168670334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPT	NM_001937	exon3	c.G460T	p.G154C	CCTCACCATAGTG	.	94.0	5.0	98.0	0.0	.	29	.	.	Atlas-SNP
C1orf112	55732	hgsc.bcm.edu	hg19	1	169806089	169806089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.,1	C1orf112	NM_018186	exon17	c.T1561C	p.S521P	AAATTTTCCCCAA	.	36.0	2.0	34.0	0.0	.	74	.	.	Atlas-SNP
FMO3	2328	hgsc.bcm.edu	hg19	1	171076816	171076816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FMO3	NM_006894	exon4	c.A322G	p.T108A	TCTTAGACATTTG	.	143.0	6.0	156.0	0.0	.	73	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181684513	181684513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNA1E	NM_001205293	exon9	c.C1211T	p.T404I	CTGGAACATCCGC	.	96.0	5.0	67.0	0.0	.	778	.	.	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	hg19	1	183086467	183086467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LAMC1	NM_002293	exon9	c.G1577T	p.W526L	ATGGGTGGCGTGC	.	87.0	5.0	93.0	0.0	.	176	.	.	Atlas-SNP
CAMSAP2	23271	hgsc.bcm.edu	hg19	1	200708967	200708967	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_203459	exon1	c.T12C	p.A4A	GGATGCTGCAGAC	.	184.0	8.0	175.0	0.0	.	.	.	.	Atlas-SNP
CAMSAP2	23271	hgsc.bcm.edu	hg19	1	200817629	200817629	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_203459	exon11	c.T1732C	p.L578L	AGTATCTTAAATT	.	100.0	4.0	103.0	0.0	.	.	.	.	Atlas-SNP
DYRK3	8444	hgsc.bcm.edu	hg19	1	206822049	206822049	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYRK3	NM_003582	exon3	c.T1506C	p.C502C	AAGGTGTCTTCAC	.	111.0	5.0	138.0	0.0	.	146	.	.	Atlas-SNP
C1orf116	79098	hgsc.bcm.edu	hg19	1	207195943	207195943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	C1orf116,NS,carcinoma,0,1	C1orf116	NM_023938	exon4	c.G1166T	p.G389V	GCCAGACCTGGAG	.	40.0	2.0	49.0	0.0	.	64	.	.	Atlas-SNP
IRF6	3664	hgsc.bcm.edu	hg19	1	209974642	209974642	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IRF6	NM_006147	exon3	c.C117T	p.P39P	TTTCCAGGGAATC	.	79.0	4.0	101.0	0.0	.	65	.	.	Atlas-SNP
RPS6KC1	26750	hgsc.bcm.edu	hg19	1	213349823	213349823	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPS6KC1	NM_012424	exon8	c.G1032T	p.G344G	CCTTGGGGTGATT	.	123.0	5.0	111.0	0.0	.	114	.	.	Atlas-SNP
HHIPL2	79802	hgsc.bcm.edu	hg19	1	222717113	222717113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HHIPL2	NM_024746	exon2	c.A740G	p.D247G	CTCCCATCAGGGA	.	87.0	4.0	101.0	0.0	.	122	.	.	Atlas-SNP
NVL	4931	hgsc.bcm.edu	hg19	1	224475675	224475675	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NVL	NM_002533	exon14	c.G1596T	p.L532L	CAACCCCAGCAGC	.	70.0	4.0	66.0	0.0	.	74	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225440023	225440023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH14	NM_001373	exon44	c.G6751A	p.E2251K	ACTGGTGAATGTT	.	460.0	209.0	485.0	2.0	.	300	.	.	Atlas-SNP
EPHX1	2052	hgsc.bcm.edu	hg19	1	226027000	226027000	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPHX1	NM_001136018	exon5	c.G675T	p.G225G	AGGAGGGGACTGG	.	133.0	6.0	151.0	0.0	.	57	.	.	Atlas-SNP
CNST	163882	hgsc.bcm.edu	hg19	1	246784775	246784775	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNST	NM_152609	exon3	c.C424T	p.L142L	AAAGTACTAAGCG	.	92.0	4.0	68.0	0.0	.	73	.	.	Atlas-SNP
OR6F1	343169	hgsc.bcm.edu	hg19	1	247875382	247875382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR6F1	NM_001005286	exon1	c.C676A	p.L226I	TCCTGAGGATGGT	.	97.0	4.0	95.0	0.0	.	88	.	.	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	hg19	2	8919191	8919191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIDINS220	NM_020738	exon19	c.C2449A	p.Q817K	GGTTCTGGTTAAT	.	81.0	4.0	137.0	0.0	.	136	.	.	Atlas-SNP
WDR35	57539	hgsc.bcm.edu	hg19	2	20133274	20133274	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR35	NM_020779	exon23	c.2548-2A>G	.	ATTTCCTGTACAA	.	91.0	4.0	63.0	0.0	.	92	.	.	Atlas-SNP
C2orf44	80304	hgsc.bcm.edu	hg19	2	24261602	24261602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2orf44	NM_025203	exon2	c.G763T	p.G255C	CTTCACCAATAAC	.	112.0	5.0	121.0	0.0	.	56	.	.	Atlas-SNP
HADHA	3030	hgsc.bcm.edu	hg19	2	26453120	26453120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HADHA	NM_000182	exon7	c.A616G	p.S206G	GAATGCTTCTACC	.	82.0	4.0	108.0	0.0	.	87	.	.	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	hg19	2	26624926	26624926	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC164	NM_145038	exon1	c.C69T	p.L23L	GATTCTCGCGCCC	.	64.0	4.0	122.0	0.0	.	84	.	.	Atlas-SNP
TMEM214	54867	hgsc.bcm.edu	hg19	2	27258128	27258128	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM214	NM_017727	exon3	c.A477G	p.E159E	AAGTGAACCCACG	.	96.0	4.0	150.0	0.0	.	41	.	.	Atlas-SNP
CAD	790	hgsc.bcm.edu	hg19	2	27465209	27465209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAD	NM_004341	exon40	c.G6136T	p.G2046W	AATGCTGGGGATG	.	60.0	4.0	91.0	0.0	.	199	.	.	Atlas-SNP
GTF3C2	2976	hgsc.bcm.edu	hg19	2	27551011	27551011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GTF3C2	NM_001521	exon18	c.C2302T	p.P768S	CTGGACCTTCAGG	.	100.0	4.0	98.0	0.0	.	73	.	.	Atlas-SNP
SNX17	9784	hgsc.bcm.edu	hg19	2	27597622	27597622	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNX17	NM_014748	exon8	c.T678C	p.A226A	TTATGCTCAGGTG	.	89.0	4.0	110.0	0.0	.	40	.	.	Atlas-SNP
IFT172	26160	hgsc.bcm.edu	hg19	2	27679376	27679376	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFT172	NM_015662	exon31	c.3371+2T>C	.	GGCCTCACCAATT	.	106.0	5.0	120.0	0.0	.	119	.	.	Atlas-SNP
IFT172	26160	hgsc.bcm.edu	hg19	2	27703934	27703934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFT172	NM_015662	exon8	c.T764C	p.V255A	AGCACAACAGACT	.	83.0	4.0	117.0	0.0	.	119	.	.	Atlas-SNP
GPN1	11321	hgsc.bcm.edu	hg19	2	27852779	27852779	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPN1	NM_007266	exon2	c.G207T	p.L69L	CAACCTGGATCCA	.	121.0	5.0	148.0	0.0	.	28	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32678911	32678911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BIRC6	NM_016252	exon23	c.G4654T	p.G1552C	GCTGAGGGTAGTT	.	152.0	8.0	176.0	0.0	.	838	.	.	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33526595	33526595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LTBP1	NM_206943	exon22	c.A3365G	p.D1122G	ACATTGATGAATG	.	94.0	4.0	118.0	0.0	.	317	.	.	Atlas-SNP
RMDN2	151393	hgsc.bcm.edu	hg19	2	38178622	38178622	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_144713	exon2	c.T264A	p.A88A	AAATGCTTCCCCT	.	54.0	4.0	76.0	0.0	.	.	.	.	Atlas-SNP
EPAS1	2034	hgsc.bcm.edu	hg19	2	46605102	46605102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPAS1	NM_001430	exon10	c.C1319A	p.T440K	GGGCCACGGAGTT	.	100.0	4.0	141.0	0.0	.	83	.	.	Atlas-SNP
MSH2	4436	hgsc.bcm.edu	hg19	2	47703706	47703706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MSH2,NS,carcinoma,0,1	MSH2	NM_000251	exon13	c.C2206A	p.L736I	TCTATCCTCAGGT	.	42.0	2.0	64.0	0.0	.	198	.	.	Atlas-SNP
FAM161A	84140	hgsc.bcm.edu	hg19	2	62067708	62067708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM161A	NM_032180	exon3	c.C431T	p.S144L	TTTTCTGATACAG	.	159.0	76.0	200.0	0.0	.	200	.	.	Atlas-SNP
EHBP1	23301	hgsc.bcm.edu	hg19	2	62998523	62998523	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EHBP1	NM_001142616	exon5	c.A308C	p.E103A	TCATAGAAAATGT	.	145.0	26.0	152.0	0.0	.	127	.	.	Atlas-SNP
PLEK	5341	hgsc.bcm.edu	hg19	2	68607861	68607861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEK	NM_002664	exon3	c.T205C	p.F69L	TTTGTGTTTAAGA	.	95.0	5.0	111.0	0.0	.	64	.	.	Atlas-SNP
SFXN5	94097	hgsc.bcm.edu	hg19	2	73247367	73247367	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SFXN5	NM_144579	exon7	c.357+1G>A	.	CACTTACAATTGG	.	89.0	4.0	126.0	0.0	.	31	.	.	Atlas-SNP
FBXO41	150726	hgsc.bcm.edu	hg19	2	73496418	73496418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXO41	NM_001080410	exon1	c.C341T	p.P114L	GCGAGGGGAGCGT	.	60.0	4.0	129.0	0.0	.	82	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84822786	84822786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH6	NM_001370	exon18	c.T2741C	p.L914P	ATTGCCTGGATCC	.	93.0	4.0	54.0	0.0	.	194	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84955003	84955003	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAH6	NM_001370	exon61	c.C10183A	p.R3395R	TTTCTCCGAGGTT	.	91.0	4.0	103.0	0.0	.	194	.	.	Atlas-SNP
GNLY	10578	hgsc.bcm.edu	hg19	2	85922521	85922521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GNLY	NM_006433	exon2	c.C131T	p.P44L	CCTGCCCGTGCCT	.	84.0	4.0	78.0	0.0	.	29	.	.	Atlas-SNP
MRPS5	64969	hgsc.bcm.edu	hg19	2	95756225	95756225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRPS5	NM_031902	exon11	c.G974A	p.R325Q	ATGAGCCGGCAGA	.	87.0	24.0	122.0	0.0	.	52	.	.	Atlas-SNP
FAHD2A	51011	hgsc.bcm.edu	hg19	2	96078508	96078508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAHD2A	NM_016044	exon7	c.T878C	p.L293P	TCTTTCTCAAGGT	.	98.0	4.0	105.0	0.0	.	25	.	.	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	hg19	2	97302719	97302719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001115016	exon2	c.A154G	p.S52G	CACTACTGGCATC	.	101.0	5.0	161.0	0.0	.	.	.	.	Atlas-SNP
ZAP70	7535	hgsc.bcm.edu	hg19	2	98349776	98349776	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZAP70	NM_001079	exon7	c.A807G	p.T269T	TCCCACACTCCCA	.	124.0	6.0	191.0	0.0	.	77	.	.	Atlas-SNP
LYG2	254773	hgsc.bcm.edu	hg19	2	99870712	99870712	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LYG2	NM_175735	exon2	c.C12A	p.S4S	CACCACGGAGGAT	.	57.0	5.0	73.0	0.0	.	26	.	.	Atlas-SNP
AFF3	3899	hgsc.bcm.edu	hg19	2	100185316	100185316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	AFF3,NS,carcinoma,0,1	AFF3	NM_001025108	exon18	c.A3055G	p.M1019V	TCACCATTGCATC	.	121.0	6.0	125.0	0.0	.	164	.	.	Atlas-SNP
RFX8	731220	hgsc.bcm.edu	hg19	2	102031354	102031354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RFX8	NM_001145664	exon7	c.A523G	p.R175G	TTAGTCTTTTGAC	.	76.0	4.0	115.0	0.0	.	16	.	.	Atlas-SNP
IL1R1	3554	hgsc.bcm.edu	hg19	2	102791944	102791944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IL1R1	NM_000877	exon10	c.A1142G	p.D381G	CTTCAGATGGAAA	.	557.0	109.0	555.0	0.0	.	52	.	.	Atlas-SNP
NCK2	8440	hgsc.bcm.edu	hg19	2	106498261	106498261	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCK2	NM_001004720	exon3	c.G704A	p.W235X	AGTGGTGGAAATG	.	91.0	5.0	118.0	0.0	.	75	.	.	Atlas-SNP
TFCP2L1	29842	hgsc.bcm.edu	hg19	2	121991665	121991665	+	Splice_Site	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TFCP2L1	NM_014553	exon13	c.1198+2T>A	.	CAACTCACCAGAC	.	56.0	4.0	61.0	0.0	.	54	.	.	Atlas-SNP
PROC	5624	hgsc.bcm.edu	hg19	2	128186178	128186178	+	Silent	SNP	C	C	A	rs121918141	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PROC	NM_000312	exon9	c.C1042A	p.R348R	AGCAGCCGAGAGA	.	67.0	4.0	131.0	0.0	.	31	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141773444	141773444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1B	NM_018557	exon13	c.G2011T	p.D671Y	CGCTGTCATCTAT	.	238.0	72.0	322.0	0.0	.	1315	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141777526	141777526	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1B	NM_018557	exon12	c.T1935C	p.S645S	GGGATGAGACATT	.	84.0	5.0	100.0	0.0	.	1315	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168107554	168107554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XIRP2	NM_152381	exon9	c.C9652T	p.P3218S	ATGTCTCCTGCAA	.	101.0	5.0	140.0	0.0	.	914	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170044602	170044602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP2	NM_004525	exon49	c.A9206T	p.H3069L	GGGGTGTGGCACA	.	196.0	49.0	318.0	0.0	.	751	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179577619	179577619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTN	NM_001267550	exon94	c.A27133G	p.T9045A	GAGGTGTTCCTTT	.	84.0	4.0	59.0	0.0	.	18412	.	.	Atlas-SNP
HECW2	57520	hgsc.bcm.edu	hg19	2	197172805	197172805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HECW2	NM_020760	exon11	c.G2439A	p.W813X	TGCCTCCCAGTCT	.	89.0	4.0	68.0	0.0	.	239	.	.	Atlas-SNP
PARD3B	117583	hgsc.bcm.edu	hg19	2	205912377	205912377	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARD3B	NM_205863	exon4	c.A468G	p.S156S	CGCTTCACACCCT	.	75.0	4.0	130.0	0.0	.	314	.	.	Atlas-SNP
GPR1	2825	hgsc.bcm.edu	hg19	2	207041152	207041152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR1	NM_001098199	exon3	c.C820A	p.H274N	TATTGTGGTGAAT	.	83.0	4.0	127.0	0.0	.	38	.	.	Atlas-SNP
SMARCAL1	50485	hgsc.bcm.edu	hg19	2	217303199	217303199	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SMARCAL1,colon,carcinoma,0,1	SMARCAL1	NM_014140	exon10	c.G1701T	p.P567P	TATGCCGGTCCTA	.	40.0	2.0	56.0	0.0	.	93	.	.	Atlas-SNP
GPBAR1	151306	hgsc.bcm.edu	hg19	2	219127770	219127770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPBAR1	NM_170699	exon2	c.G323T	p.G108V	TGCACGGGGAGCG	.	122.0	21.0	109.0	0.0	.	22	.	.	Atlas-SNP
C2orf62	375307	hgsc.bcm.edu	hg19	2	219222293	219222293	+	Missense_Mutation	SNP	C	C	T	rs369378162		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2orf62	NM_198559	exon3	c.C155T	p.T52M	CTGAGACGCTGGC	.	109.0	13.0	111.0	0.0	.	28	.	.	Atlas-SNP
CRYBA2	1412	hgsc.bcm.edu	hg19	2	219856962	219856962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CRYBA2	NM_057094	exon3	c.G165T	p.W55C	GGCCACCCAACTG	.	84.0	4.0	87.0	0.0	.	13	.	.	Atlas-SNP
ATG9A	79065	hgsc.bcm.edu	hg19	2	220089453	220089453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATG9A	NM_001077198	exon8	c.C640A	p.R214S	GGAAACGGAGGAT	.	98.0	4.0	165.0	0.0	.	50	.	.	Atlas-SNP
GMPPA	29926	hgsc.bcm.edu	hg19	2	220366718	220366718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GMPPA	NM_205847	exon5	c.C388T	p.H130Y	GAAGCCCACCGAC	.	65.0	6.0	115.0	0.0	.	50	.	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	hg19	2	220422083	220422083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OBSL1	NM_001173431	exon12	c.T4048C	p.F1350L	CAAGGAAGATGCG	.	38.0	4.0	54.0	0.0	.	120	.	.	Atlas-SNP
PAX3	5077	hgsc.bcm.edu	hg19	2	223066865	223066865	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAX3	NM_181457	exon8	c.C1218A	p.P406P	AGTCTGGGGCTGA	.	81.0	4.0	115.0	0.0	.	106	.	.	Atlas-SNP
CUL3	8452	hgsc.bcm.edu	hg19	2	225376256	225376256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CUL3	NM_001257198	exon6	c.A716G	p.Y239C	TTTATATATACTG	.	118.0	5.0	110.0	0.0	.	96	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225751231	225751231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK10	NM_014689	exon5	c.A434G	p.E145G	AGCTTCTCTGGTT	.	73.0	4.0	95.0	0.0	.	308	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225796364	225796364	+	Nonsense_Mutation	SNP	C	C	A	rs186136248	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK10	NM_014689	exon2	c.G145T	p.E49X	AAGGCTCGAGAAG	.	50.0	4.0	81.0	0.0	.	308	.	C|0.999;T|0.001	Atlas-SNP
NYAP2	57624	hgsc.bcm.edu	hg19	2	226378371	226378371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020864	exon3	c.C506T	p.T169I	GGAAAACCCCTGA	.	67.0	14.0	86.0	0.0	.	.	.	.	Atlas-SNP
NYAP2	57624	hgsc.bcm.edu	hg19	2	226447056	226447056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_020864	exon4	c.A923G	p.K308R	TCGCCAAGGCCTC	.	117.0	27.0	114.0	0.0	.	.	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230643664	230643664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIP12	NM_004238	exon34	c.G4912A	p.V1638I	GAGATACAAGCGC	.	82.0	4.0	106.0	0.0	.	207	.	.	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	232880358	232880358	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DIS3L2	NM_001257282	exon3	c.T187C	p.L63L	GAAGGCTTGAAGA	.	102.0	5.0	128.0	0.0	.	77	.	.	Atlas-SNP
AGXT	189	hgsc.bcm.edu	hg19	2	241813425	241813425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AGXT	NM_000030	exon6	c.A626G	p.K209R	CCCAGAAGGCCCT	.	52.0	4.0	74.0	0.0	.	50	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4730230	4730230	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR1	NM_001099952	exon31	c.C3727T	p.Q1243X	TTTTTGCAGAATT	.	97.0	4.0	139.0	0.0	.	659	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4735176	4735176	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR1	NM_001099952	exon33	c.G4005T	p.L1335L	GTAGCTGGTCAAT	.	98.0	4.0	122.0	0.0	.	659	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4747895	4747895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR1	NM_001099952	exon37	c.G4675A	p.V1559I	AGCCAAGTCAACA	.	86.0	4.0	135.0	0.0	.	659	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4774886	4774886	+	Missense_Mutation	SNP	G	G	T	rs369108656	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR1	NM_001168272	exon42	c.G5290T	p.G1764C	GGACCCGGCAAGC	.	52.0	4.0	59.0	0.0	.	659	.	.	Atlas-SNP
HRH1	3269	hgsc.bcm.edu	hg19	3	11302057	11302057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	HRH1,NS,carcinoma,0,1	HRH1	NM_000861	exon3	c.G1334T	p.C445F	ACTGTTGCAATGA	.	54.0	3.0	70.0	0.0	.	58	.	.	Atlas-SNP
NUP210	23225	hgsc.bcm.edu	hg19	3	13413453	13413453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP210	NM_024923	exon13	c.C1667T	p.P556L	CTCAGGGGCAGCT	.	94.0	5.0	130.0	0.0	.	182	.	.	Atlas-SNP
NUP210	23225	hgsc.bcm.edu	hg19	3	13429809	13429809	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	NUP210,NS,carcinoma,0,1	NUP210	NM_024923	exon5	c.C678A	p.V226V	CTTGTAGACAGCC	.	44.0	2.0	77.0	0.0	.	182	.	.	Atlas-SNP
WNT7A	7476	hgsc.bcm.edu	hg19	3	13860913	13860913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WNT7A	NM_004625	exon4	c.A578G	p.E193G	TTCTCCTCCAGGA	.	59.0	4.0	62.0	0.0	.	70	.	.	Atlas-SNP
SLC6A6	6533	hgsc.bcm.edu	hg19	3	14526411	14526411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC6A6	NM_003043	exon15	c.C1759T	p.R587C	CCCAACCGCTGGG	.	68.0	4.0	117.0	0.0	.	58	.	.	Atlas-SNP
FGD5	152273	hgsc.bcm.edu	hg19	3	14958766	14958766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FGD5	NM_152536	exon12	c.T3416C	p.V1139A	ACGATGTGCTCCT	.	84.0	4.0	121.0	0.0	.	248	.	.	Atlas-SNP
TBC1D5	9779	hgsc.bcm.edu	hg19	3	17333464	17333464	+	Missense_Mutation	SNP	C	C	A	rs143029277	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D5	NM_014744	exon15	c.G1168T	p.G390C	GAAGGCCGAGACA	.	72.0	4.0	103.0	0.0	.	69	.	C|1.000;T|0.000	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	hg19	3	18393620	18393620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SATB1	NM_002971	exon10	c.A1643G	p.N548S	GAGAGGTTCTCCC	.	146.0	6.0	220.0	0.0	.	96	.	.	Atlas-SNP
KAT2B	8850	hgsc.bcm.edu	hg19	3	20153102	20153102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KAT2B	NM_003884	exon6	c.G866A	p.C289Y	GTTACTGCAACGT	.	73.0	4.0	86.0	0.0	.	73	.	.	Atlas-SNP
NGLY1	55768	hgsc.bcm.edu	hg19	3	25778936	25778936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NGLY1	NM_018297	exon6	c.C892A	p.P298T	TCTCAGGGTTATT	.	45.0	4.0	52.0	0.0	.	57	.	.	Atlas-SNP
AZI2	64343	hgsc.bcm.edu	hg19	3	28368437	28368437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AZI2	NM_022461	exon7	c.A652G	p.N218D	GCATATTATCACT	.	92.0	4.0	105.0	0.0	.	33	.	.	Atlas-SNP
LRRFIP2	9209	hgsc.bcm.edu	hg19	3	37107332	37107332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRFIP2	NM_006309	exon24	c.G1668T	p.Q556H	CAAGACCTGAGCA	.	137.0	6.0	167.0	0.0	.	71	.	.	Atlas-SNP
VILL	50853	hgsc.bcm.edu	hg19	3	38044030	38044030	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VILL	NM_015873	exon13	c.G1623T	p.L541L	CTTGCTGGTCACA	.	119.0	7.0	87.0	0.0	.	61	.	.	Atlas-SNP
CSRNP1	64651	hgsc.bcm.edu	hg19	3	39184971	39184971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSRNP1	NM_033027	exon5	c.T1345C	p.F449L	ATGTGAAGCTACA	.	88.0	5.0	124.0	0.0	.	59	.	.	Atlas-SNP
CSRNP1	64651	hgsc.bcm.edu	hg19	3	39185786	39185786	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSRNP1	NM_033027	exon4	c.C622A	p.R208R	GAGCTCGACGTCG	.	90.0	6.0	146.0	0.0	.	59	.	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	hg19	3	39229162	39229162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XIRP1	NM_001198621	exon2	c.A1775G	p.Q592R	ATGGTCTGCACAT	.	134.0	8.0	189.0	0.0	.	173	.	.	Atlas-SNP
ZNF620	253639	hgsc.bcm.edu	hg19	3	40558019	40558019	+	Nonsense_Mutation	SNP	G	G	T	rs377575762	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF620,NS,carcinoma,0,1	ZNF620	NM_175888	exon5	c.G934T	p.E312X	TGTAACGAATGTT	.	40.0	2.0	27.0	0.0	.	38	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41275034	41275034	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTNNB1	NM_001098209	exon9	c.T1200C	p.G400G	GGAAGGTCTCCTT	.	97.0	5.0	107.0	0.0	.	4904	.	.	Atlas-SNP
TRAK1	22906	hgsc.bcm.edu	hg19	3	42244317	42244317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRAK1	NM_001265610	exon12	c.A1595G	p.K532R	TGCGGAAGGCGGG	.	66.0	4.0	107.0	0.0	.	188	.	.	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	hg19	3	42754719	42754719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC13	NM_144719	exon14	c.A1808G	p.E603G	ATCTTCTCCAGAT	.	80.0	5.0	122.0	0.0	.	71	.	.	Atlas-SNP
ANO10	55129	hgsc.bcm.edu	hg19	3	43621859	43621859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ANO10,NS,carcinoma,0,1	ANO10	NM_018075	exon5	c.A578G	p.K193R	TGATACTTCAAAG	.	30.0	4.0	38.0	0.0	.	70	.	.	Atlas-SNP
CCR9	10803	hgsc.bcm.edu	hg19	3	45942794	45942794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CCR9,NS,carcinoma,0,1	CCR9	NM_031200	exon3	c.A514G	p.I172V	TTTACCATCTGGG	.	72.0	20.0	106.0	0.0	.	45	.	.	Atlas-SNP
NBEAL2	23218	hgsc.bcm.edu	hg19	3	47046023	47046023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NBEAL2	NM_015175	exon38	c.G6237T	p.L2079F	GTACTTGATGCAA	.	74.0	4.0	139.0	0.0	.	267	.	.	Atlas-SNP
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48465517	48465517	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB1	NM_001130082	exon3	c.G504A	p.V168V	TCGCCCCACAAAC	.	88.0	4.0	91.0	0.0	.	150	.	.	Atlas-SNP
SLC26A6	65010	hgsc.bcm.edu	hg19	3	48669737	48669737	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC26A6	NM_022911	exon5	c.A526T	p.R176X	CATCTCTGGCTGT	.	262.0	109.0	340.0	0.0	.	45	.	.	Atlas-SNP
WDR6	11180	hgsc.bcm.edu	hg19	3	49049708	49049708	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR6	NM_018031	exon2	c.G831T	p.R277R	GGGTCGGGTGCAG	.	117.0	5.0	147.0	0.0	.	79	.	.	Atlas-SNP
WDR6	11180	hgsc.bcm.edu	hg19	3	49051271	49051271	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR6	NM_018031	exon2	c.A2394G	p.T798T	ACTCACAGCTGTT	.	84.0	4.0	99.0	0.0	.	79	.	.	Atlas-SNP
CCDC36	339834	hgsc.bcm.edu	hg19	3	49293752	49293752	+	Silent	SNP	G	G	T	rs143925037	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CCDC36_ENST00000438782,NS,carcinoma,0,2	CCDC36	NM_001135197	exon8	c.G822T	p.S274S	GACGTCGCCACCT	.	47.0	2.0	42.0	0.0	.	77	.	G|1.000;A|0.000	Atlas-SNP
FAM212A	389119	hgsc.bcm.edu	hg19	3	49841899	49841899	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_203370	exon2	c.C343T	p.Q115X	GTATCCCAGCGCC	.	83.0	4.0	124.0	0.0	.	.	.	.	Atlas-SNP
CYB561D2	11068	hgsc.bcm.edu	hg19	3	50390719	50390719	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYB561D2	NM_007022	exon4	c.T213C	p.S71S	TGAGAGTTCGCTG	.	91.0	4.0	86.0	0.0	.	13	.	.	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51376393	51376393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK3	NM_004947	exon37	c.G3700A	p.E1234K	AACAAGGAAGAAA	.	98.0	4.0	108.0	0.0	.	397	.	.	Atlas-SNP
VPRBP	9730	hgsc.bcm.edu	hg19	3	51505002	51505002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPRBP	NM_014703	exon4	c.A130G	p.K44E	TTTCTTTTTCAAT	.	99.0	4.0	119.0	0.0	.	107	.	.	Atlas-SNP
GLT8D1	55830	hgsc.bcm.edu	hg19	3	52730329	52730329	+	Silent	SNP	G	G	T	rs371584519	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GLT8D1	NM_152932	exon6	c.C453A	p.T151T	TGCAAAGGTTAAC	.	90.0	4.0	128.0	0.0	.	28	.	.	Atlas-SNP
TMEM110-MUSTN1	100526772	hgsc.bcm.edu	hg19	3	52874604	52874604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001198974	exon8	c.A791G	p.E264G	TCCATCTCATCAT	.	55.0	4.0	66.0	0.0	.	.	.	.	Atlas-SNP
TKT	7086	hgsc.bcm.edu	hg19	3	53289863	53289863	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TKT	NM_001258028	exon1	c.G96A	p.A32A	GCCCGCCGCAGTG	.	80.0	4.0	148.0	0.0	.	38	.	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53815596	53815596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNA1D	NM_000720	exon40	c.A4754G	p.N1585S	CAGGGAACCTGGA	.	117.0	5.0	176.0	0.0	.	324	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77617564	77617564	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ROBO2	NM_002942	exon13	c.C1950A	p.T650T	TCCCACCACGGTT	.	95.0	4.0	108.0	0.0	.	527	.	.	Atlas-SNP
STX19	415117	hgsc.bcm.edu	hg19	3	93733245	93733245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STX19	NM_001001850	exon2	c.G869A	p.C290Y	CTACAGCATGGAC	.	84.0	5.0	99.0	0.0	.	19	.	.	Atlas-SNP
DHFRL1	200895	hgsc.bcm.edu	hg19	3	93779792	93779792	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DHFRL1	NM_001195643	exon2	c.A564G	p.X188X	TTCATATTAATCA	.	125.0	5.0	122.0	0.0	.	25	.	.	Atlas-SNP
TRMT10C	54931	hgsc.bcm.edu	hg19	3	101284095	101284095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017819	exon2	c.G470T	p.R157M	CAGCAAGGGAAGA	.	50.0	4.0	69.0	0.0	.	.	.	.	Atlas-SNP
PLCXD2	257068	hgsc.bcm.edu	hg19	3	111432801	111432801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLCXD2	NM_001185106	exon3	c.C692A	p.P231Q	AGATTCCAGCGCC	.	52.0	4.0	98.0	0.0	.	36	.	.	Atlas-SNP
BOC	91653	hgsc.bcm.edu	hg19	3	112987288	112987288	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BOC	NM_033254	exon5	c.C519T	p.S173S	GGCCTCCAGAGGT	.	68.0	16.0	65.0	0.0	.	139	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113737567	113737567	+	Missense_Mutation	SNP	C	C	A	rs76418892	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1407	NM_020817	exon8	c.G1121T	p.R374L	GTCTCCCGCTCCA	.	81.0	4.0	93.0	0.0	.	80	.	C|0.991;T|0.009	Atlas-SNP
QTRTD1	79691	hgsc.bcm.edu	hg19	3	113789666	113789666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	QTRTD1	NM_001256835	exon5	c.G563T	p.R188L	GTCTGCGGCTGCA	.	93.0	4.0	57.0	0.0	.	29	.	.	Atlas-SNP
POPDC2	64091	hgsc.bcm.edu	hg19	3	119378819	119378819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POPDC2	NM_022135	exon1	c.A452G	p.E151G	GGTGTCTCACCCT	.	76.0	5.0	96.0	0.0	.	36	.	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	hg19	3	122419215	122419215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARP14	NM_017554	exon6	c.A1814G	p.N605S	TTGAGAACAAAGA	.	79.0	4.0	92.0	0.0	.	242	.	.	Atlas-SNP
CCDC14	64770	hgsc.bcm.edu	hg19	3	123634090	123634090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC14	NM_022757	exon12	c.C2275A	p.Q759K	GTGGCTGAGGGGA	.	76.0	4.0	109.0	0.0	.	97	.	.	Atlas-SNP
HEG1	57493	hgsc.bcm.edu	hg19	3	124732817	124732817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	HEG1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	HEG1	NM_020733	exon6	c.G1606T	p.G536C	CTTGACCGTAGCT	.	46.0	3.0	44.0	1.0	.	109	.	.	Atlas-SNP
IFT122	55764	hgsc.bcm.edu	hg19	3	129238004	129238004	+	Missense_Mutation	SNP	C	C	A	rs373326394	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFT122	NM_052985	exon29	c.C3599A	p.P1200Q	AGGACCCGTTCAC	.	93.0	5.0	145.0	0.0	.	117	.	.	Atlas-SNP
PLXND1	23129	hgsc.bcm.edu	hg19	3	129279245	129279245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXND1	NM_015103	exon31	c.G5061C	p.K1687N	AGACTTCTTGGGC	.	117.0	5.0	197.0	0.0	.	149	.	.	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132193831	132193831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAJC13	NM_015268	exon22	c.G2347T	p.E783X	CGAGAAGAACTGA	.	86.0	4.0	102.0	0.0	.	253	.	.	Atlas-SNP
CEP63	80254	hgsc.bcm.edu	hg19	3	134264444	134264444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP63	NM_001042383	exon7	c.G572T	p.R191L	TCAATCGGAAACA	.	78.0	4.0	105.0	0.0	.	56	.	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	hg19	3	140251313	140251313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CLSTN2	NM_022131	exon9	c.G1492T	p.G498C	ACAGTCGGCGCTT	.	91.0	5.0	122.0	0.0	.	190	.	.	Atlas-SNP
EIF2A	83939	hgsc.bcm.edu	hg19	3	150285799	150285799	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF2A	NM_032025	exon8	c.G660A	p.K220K	CTTTAAGGCAGAT	.	61.0	19.0	61.0	0.0	.	59	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153840716	153840716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARHGEF26	NM_001251962	exon2	c.T935C	p.L312S	GAGGCTTGCGGTC	.	95.0	4.0	160.0	0.0	.	158	.	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	hg19	3	154145382	154145382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	GPR149,NS,carcinoma,0,1	GPR149	NM_001038705	exon2	c.G1097A	p.R366H	GTCCAGCGTTTGG	.	71.0	3.0	116.0	0.0	.	134	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	155838515	155838515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNAB1	NM_172160	exon1	c.T115C	p.S39P	AAAGCCTCAGAAA	.	137.0	6.0	197.0	0.0	.	176	.	.	Atlas-SNP
TRIM59	286827	hgsc.bcm.edu	hg19	3	160155954	160155954	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM59	NM_173084	exon3	c.G1018C	p.V340L	GTATTACTGAAAT	.	271.0	85.0	299.0	0.0	.	42	.	.	Atlas-SNP
SPATA16	83893	hgsc.bcm.edu	hg19	3	172835323	172835323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA16	NM_031955	exon2	c.A199G	p.K67E	TGCCCTTTGTCAT	.	1219.0	190.0	696.0	0.0	.	111	.	.	Atlas-SNP
YEATS2	55689	hgsc.bcm.edu	hg19	3	183521785	183521785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	YEATS2	NM_018023	exon27	c.C3593A	p.A1198E	AAAGAGCAATGAC	.	111.0	5.0	129.0	0.0	.	111	.	.	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184049840	184049840	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF4G1	NM_001194946	exon33	c.C4605A	p.L1535L	CGCCCTCCAGGCC	.	78.0	4.0	86.0	0.0	.	151	.	.	Atlas-SNP
SENP2	59343	hgsc.bcm.edu	hg19	3	185316214	185316214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP2	NM_021627	exon3	c.C172A	p.Q58K	ATTCACCAAGTGA	.	175.0	7.0	186.0	0.0	.	88	.	.	Atlas-SNP
LPP	4026	hgsc.bcm.edu	hg19	3	188327323	188327323	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPP	NM_005578	exon6	c.G804T	p.R268R	AACACGGGGAGGC	.	89.0	4.0	119.0	0.0	.	72	.	.	Atlas-SNP
LPP	4026	hgsc.bcm.edu	hg19	3	188592145	188592145	+	Missense_Mutation	SNP	G	G	T	rs9830664	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPP	NM_005578	exon11	c.G1717T	p.G573C	GATTGCGGTGGTC	.	79.0	4.0	67.0	0.0	.	72	.	G|0.998;A|0.002	Atlas-SNP
CPN2	1370	hgsc.bcm.edu	hg19	3	194062557	194062557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPN2	NM_001080513	exon2	c.T875C	p.V292A	AGGCCAACCAGGC	.	97.0	4.0	146.0	0.0	.	56	.	.	Atlas-SNP
SLC51A	200931	hgsc.bcm.edu	hg19	3	195944788	195944788	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_152672	exon2	c.A114G	p.T38T	TCCCACAGCAGCC	.	43.0	5.0	85.0	0.0	.	.	.	.	Atlas-SNP
MFSD7	84179	hgsc.bcm.edu	hg19	4	678289	678289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MFSD7	NM_032219	exon6	c.G823A	p.A275T	CGCTTGCACAGAG	.	79.0	4.0	125.0	0.0	.	50	.	.	Atlas-SNP
GAK	2580	hgsc.bcm.edu	hg19	4	843758	843758	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAK	NM_005255	exon27	c.G3756A	p.V1252V	CATGCCCACGGGC	.	84.0	4.0	94.0	0.0	.	104	.	.	Atlas-SNP
SLC26A1	10861	hgsc.bcm.edu	hg19	4	984946	984946	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC26A1	NM_022042	exon2	c.C546A	p.T182T	GAGGGCGGTGGCG	.	121.0	5.0	156.0	0.0	.	44	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3131704	3131704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	HTT,NS,carcinoma,0,1	HTT	NM_002111	exon13	c.G1797T	p.Q599H	GCCCCAGGATGAA	.	99.0	6.0	100.0	0.0	.	221	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3225849	3225849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon56	c.G7756T	p.A2586S	TCTCCGGCTACTA	.	98.0	35.0	98.0	0.0	.	221	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3241606	3241606	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTT	NM_002111	exon67	c.G9249T	p.L3083L	CAAGCTGGAGCAG	.	92.0	4.0	91.0	0.0	.	221	.	.	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	hg19	4	3424105	3424105	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RGS12	NM_002926	exon11	c.G2841T	p.S947S	CCAGTCGGAGGCC	.	122.0	5.0	141.0	0.0	.	128	.	.	Atlas-SNP
HGFAC	3083	hgsc.bcm.edu	hg19	4	3443800	3443800	+	Silent	SNP	G	G	C	rs372137428		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HGFAC	NM_001528	exon1	c.G72C	p.L24L	CCTCCTGCTGCTG	.	22.0	4.0	27.0	0.0	.	69	.	.	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	hg19	4	5399971	5399971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	STK32B,NS,carcinoma,0,1	STK32B	NM_018401	exon5	c.G472T	p.G158X	GAACACGGTAAGC	.	96.0	4.0	146.0	0.0	.	87	.	.	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	hg19	4	7735080	7735080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SORCS2	NM_020777	exon24	c.C3140T	p.A1047V	TGAACGCACAGAA	.	107.0	5.0	117.0	0.0	.	98	.	.	Atlas-SNP
WDR1	9948	hgsc.bcm.edu	hg19	4	10100740	10100740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR1	NM_017491	exon4	c.T253C	p.W85R	TATCCCAGATCCT	.	99.0	4.0	173.0	0.0	.	93	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13603749	13603749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_148894	exon10	c.G4775A	p.G1592D	GCCCCACCTTCTT	.	95.0	4.0	123.0	0.0	.	.	.	.	Atlas-SNP
KCNIP4	80333	hgsc.bcm.edu	hg19	4	20852249	20852249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	KCNIP4_ENST00000447367,NS,carcinoma,+1,4	KCNIP4	NM_025221	exon2	c.C145T	p.R49W	CAGGCCGATGCCT	.	43.0	2.0	57.0	0.0	.	85	.	.	Atlas-SNP
LGI2	55203	hgsc.bcm.edu	hg19	4	25005815	25005815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LGI2	NM_018176	exon8	c.G896T	p.G299V	TGAGAGCCACCGA	.	89.0	4.0	152.0	0.0	.	62	.	.	Atlas-SNP
SLAIN2	57606	hgsc.bcm.edu	hg19	4	48422205	48422205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLAIN2	NM_020846	exon7	c.T1424C	p.V475A	AACCAGTGAAAGC	.	96.0	4.0	178.0	0.0	.	31	.	.	Atlas-SNP
TMPRSS11BNL	401136	hgsc.bcm.edu	hg19	4	69078095	69078095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMPRSS11BNL	NM_001129907	exon2	c.C109A	p.H37N	GAAAATGAACAAG	.	306.0	89.0	438.0	1.0	.	4	.	.	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	hg19	4	74005966	74005966	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANKRD17	NM_032217	exon15	c.A2367G	p.P789P	GTTTGCTGGCAAA	.	84.0	4.0	89.0	0.0	.	214	.	.	Atlas-SNP
G3BP2	9908	hgsc.bcm.edu	hg19	4	76573877	76573877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	G3BP2	NM_012297	exon9	c.C874T	p.R292C	GTTCACGCACACG	.	35.0	4.0	34.0	0.0	.	52	.	.	Atlas-SNP
SCD5	79966	hgsc.bcm.edu	hg19	4	83582036	83582036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCD5	NM_024906	exon4	c.T764C	p.V255A	CAGAATACCTCCA	.	99.0	4.0	114.0	0.0	.	58	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87690933	87690933	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPN13	NM_080685	exon29	c.G4516T	p.E1506X	ACATTTGAGGTAA	.	93.0	4.0	81.0	0.0	.	203	.	.	Atlas-SNP
HERC6	55008	hgsc.bcm.edu	hg19	4	89356960	89356960	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HERC6	NM_017912	exon18	c.T2334C	p.P778P	CCTTCCTTTCCCA	.	104.0	5.0	129.0	0.0	.	104	.	.	Atlas-SNP
UNC5C	8633	hgsc.bcm.edu	hg19	4	96104119	96104119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UNC5C	NM_003728	exon14	c.G2380A	p.V794I	TGCAAACCAGCTC	.	98.0	4.0	155.0	0.0	.	141	.	.	Atlas-SNP
TET2	54790	hgsc.bcm.edu	hg19	4	106155605	106155605	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TET2	NM_001127208	exon3	c.A506T	p.H169L	CAACACATAACTG	.	149.0	43.0	220.0	0.0	.	1762	.	.	Atlas-SNP
SGMS2	166929	hgsc.bcm.edu	hg19	4	108824505	108824505	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGMS2	NM_001136257	exon4	c.G690T	p.T230T	TCACACGGTTACG	.	98.0	4.0	92.0	0.0	.	39	.	.	Atlas-SNP
ELOVL6	79071	hgsc.bcm.edu	hg19	4	111119423	111119423	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ELOVL6	NM_001130721	exon2	c.C69T	p.I23I	CCATTGGATGGCT	.	78.0	5.0	140.0	0.0	.	27	.	.	Atlas-SNP
ANXA5	308	hgsc.bcm.edu	hg19	4	122607464	122607464	+	Silent	SNP	G	G	T	rs370872365	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANXA5	NM_001154	exon3	c.C73A	p.R25R	CCTTCCGAAGAGT	.	80.0	4.0	124.0	0.0	.	29	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123274969	123274969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1109	NM_015312	exon80	c.G14102T	p.G4701V	TTGTAGGCTCCAG	.	87.0	4.0	132.0	0.0	.	424	.	.	Atlas-SNP
GAB1	2549	hgsc.bcm.edu	hg19	4	144378898	144378898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAB1	NM_207123	exon7	c.G1651T	p.G551C	ACCATAGGTGACT	.	87.0	4.0	112.0	0.0	.	80	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155244428	155244428	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	DCHS2_ENST00000339452,NS,carcinoma,0,1	DCHS2	NM_001142552	exon8	c.A4072C	p.K1358Q	TTTGTTTTTTGCA	.	81.0	5.0	53.0	1.0	.	594	.	.	Atlas-SNP
ANXA10	11199	hgsc.bcm.edu	hg19	4	169060641	169060641	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANXA10	NM_007193	exon3	c.T105C	p.C35C	AGACTGTGACAAA	.	100.0	4.0	146.0	0.0	.	44	.	.	Atlas-SNP
CBR4	84869	hgsc.bcm.edu	hg19	4	169931172	169931172	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBR4	NM_032783	exon1	c.C69A	p.A23A	TTTCCGGGCCATT	.	93.0	4.0	116.0	0.0	.	15	.	.	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	hg19	4	173730515	173730515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GALNTL6	NM_001034845	exon6	c.A557G	p.H186R	TAGAACACCTGAA	.	94.0	4.0	138.0	0.0	.	102	.	.	Atlas-SNP
STOX2	56977	hgsc.bcm.edu	hg19	4	184930350	184930350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STOX2	NM_020225	exon3	c.T359C	p.L120P	ACACGCTGAACAC	.	86.0	5.0	91.0	0.0	.	142	.	.	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	32098708	32098708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDZD2	NM_178140	exon22	c.C8186A	p.S2729Y	TGCTGTCCAGAAA	.	65.0	4.0	67.0	0.0	.	306	.	.	Atlas-SNP
NADKD1	133686	hgsc.bcm.edu	hg19	5	36217963	36217963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NADKD1	NM_001085411	exon6	c.G668T	p.R223M	TATAACCTGATTC	.	103.0	5.0	164.0	0.0	.	47	.	.	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	hg19	5	66459398	66459398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAST4	NM_001164664	exon29	c.G4391A	p.R1464H	GCTCCCGCAAGCA	.	62.0	4.0	88.0	0.0	.	218	.	.	Atlas-SNP
CARTPT	9607	hgsc.bcm.edu	hg19	5	71015234	71015234	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CARTPT	NM_004291	exon1	c.G114T	p.L38L	AGCCCTGGACATC	.	95.0	4.0	104.0	0.0	.	10	.	.	Atlas-SNP
ENC1	8507	hgsc.bcm.edu	hg19	5	73930624	73930624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ENC1	NM_003633	exon2	c.G1687T	p.D563Y	ACACGTCTAATGT	.	100.0	4.0	150.0	0.0	.	56	.	.	Atlas-SNP
GFM2	84340	hgsc.bcm.edu	hg19	5	74028915	74028915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GFM2	NM_032380	exon16	c.C1519A	p.H507N	ACGCATGTTCCAA	.	84.0	4.0	108.0	0.0	.	38	.	.	Atlas-SNP
JMY	133746	hgsc.bcm.edu	hg19	5	78533050	78533050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	JMY	NM_152405	exon1	c.A577G	p.I193V	GAGGAGATAGAGG	.	121.0	5.0	206.0	0.0	.	82	.	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79034137	79034137	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CMYA5	NM_153610	exon2	c.G9549T	p.L3183L	ATTTCTGGAGGAG	.	86.0	4.0	111.0	0.0	.	643	.	.	Atlas-SNP
THBS4	7060	hgsc.bcm.edu	hg19	5	79351663	79351663	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	THBS4	NM_003248	exon3	c.C348T	p.N116N	CAACAACCTGCAG	.	82.0	4.0	151.0	0.0	.	82	.	.	Atlas-SNP
THBS4	7060	hgsc.bcm.edu	hg19	5	79355537	79355537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	THBS4	NM_003248	exon7	c.T796C	p.F266L	CTCAAGTTTCAGT	.	54.0	4.0	94.0	0.0	.	82	.	.	Atlas-SNP
ARRDC3	57561	hgsc.bcm.edu	hg19	5	90670966	90670966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ARRDC3,bladder,carcinoma,0,1	ARRDC3	NM_020801	exon5	c.G643A	p.E215K	AGTTCTCAATCTC	.	64.0	3.0	51.0	0.0	.	56	.	.	Atlas-SNP
MCTP1	79772	hgsc.bcm.edu	hg19	5	94275844	94275844	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCTP1	NM_024717	exon5	c.G1117T	p.G373X	TGATTCCAAGATC	.	82.0	4.0	124.0	0.0	.	110	.	.	Atlas-SNP
ARSK	153642	hgsc.bcm.edu	hg19	5	94939217	94939217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARSK	NM_198150	exon8	c.C1598A	p.P533Q	TGAATCCAAGAGC	.	73.0	4.0	74.0	0.0	.	29	.	.	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135692571	135692571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRPC7	NM_001167576	exon2	c.A505G	p.I169V	CCAGGATGATGGG	.	93.0	4.0	116.0	0.0	.	126	.	.	Atlas-SNP
KIF20A	10112	hgsc.bcm.edu	hg19	5	137518950	137518950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF20A	NM_005733	exon8	c.T925C	p.Y309H	GAGATCTACAACG	.	84.0	4.0	83.0	0.0	.	53	.	.	Atlas-SNP
ETF1	2107	hgsc.bcm.edu	hg19	5	137844000	137844000	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ETF1	NM_004730	exon11	c.C1308T	p.D436D	CTAGTAGTCATCA	.	124.0	19.0	96.0	0.0	.	38	.	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139189371	139189371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSD2	NM_032289	exon2	c.C346A	p.P116T	CTCTACCCAGATG	.	113.0	5.0	64.0	0.0	.	88	.	.	Atlas-SNP
PCDHAC2	56134	hgsc.bcm.edu	hg19	5	140347691	140347691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHAC2	NM_031883	exon1	c.C1340A	p.P447Q	GAATACCGCAGCT	.	87.0	5.0	151.0	0.0	.	142	.	.	Atlas-SNP
PCDHGA2	56113	hgsc.bcm.edu	hg19	5	140719523	140719523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGA2	NM_018915	exon1	c.A985G	p.T329A	CTTCTAACCAGAG	.	98.0	4.0	149.0	0.0	.	205	.	.	Atlas-SNP
PCDHGA6	56109	hgsc.bcm.edu	hg19	5	140754660	140754660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGA6	NM_018919	exon1	c.T1010C	p.I337T	TAACTATCTTGGA	.	98.0	6.0	151.0	0.0	.	219	.	.	Atlas-SNP
PCDHGA7	56108	hgsc.bcm.edu	hg19	5	140762724	140762724	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDHGA7	NM_032087	exon1	c.T258C	p.T86T	GGTCACTGCGGGC	.	97.0	4.0	160.0	0.0	.	130	.	.	Atlas-SNP
PCDHGB4	8641	hgsc.bcm.edu	hg19	5	140768682	140768682	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PCDHGB4,NS,carcinoma,0,1	PCDHGB4	NM_032098	exon1	c.G1231T	p.E411X	GACCGCGAGCAGA	.	83.0	4.0	92.0	0.0	.	125	.	.	Atlas-SNP
PCDHGB4	8641	hgsc.bcm.edu	hg19	5	140769224	140769224	+	Silent	SNP	G	G	T	rs372714152	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PCDHGB4,colon,carcinoma,0,1	PCDHGB4	NM_032098	exon1	c.G1773T	p.A591A	AGTGGCGGTGGAC	.	63.0	3.0	81.0	0.0	.	125	.	.	Atlas-SNP
DIAPH1	1729	hgsc.bcm.edu	hg19	5	140953135	140953135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DIAPH1	NM_005219	exon16	c.C2282A	p.P761Q	AGAACTGGGGCTG	.	94.0	5.0	133.0	0.0	.	64	.	.	Atlas-SNP
PDE6A	5145	hgsc.bcm.edu	hg19	5	149278051	149278051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDE6A	NM_000440	exon10	c.G1282T	p.G428C	ACCAGCCCAGAAA	.	57.0	4.0	52.0	0.0	.	98	.	.	Atlas-SNP
NDST1	3340	hgsc.bcm.edu	hg19	5	149927823	149927823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDST1	NM_001543	exon12	c.T2189C	p.F730S	ACACCTTCCATGA	.	104.0	5.0	133.0	0.0	.	79	.	.	Atlas-SNP
TIMD4	91937	hgsc.bcm.edu	hg19	5	156349214	156349214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TIMD4	NM_138379	exon7	c.C908A	p.P303H	GACATGGGTATTC	.	82.0	5.0	125.0	0.0	.	94	.	.	Atlas-SNP
C5orf52	100190949	hgsc.bcm.edu	hg19	5	157102111	157102111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C5orf52	NM_001145132	exon2	c.C224A	p.S75Y	TGAATTCCAGTGA	.	90.0	4.0	157.0	0.0	.	17	.	.	Atlas-SNP
GABRA1	2554	hgsc.bcm.edu	hg19	5	161300201	161300201	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABRA1	NM_001127643	exon6	c.C334A	p.R112R	GTCCTCCGGTTAA	.	133.0	42.0	167.0	0.0	.	132	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167675305	167675305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001122679	exon27	c.C7334T	p.P2445L	CGGCCCCCTTTAA	.	98.0	4.0	144.0	0.0	.	.	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167689229	167689229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001122679	exon29	c.G7712T	p.R2571L	AAGGGCGGGTGAC	.	89.0	6.0	115.0	0.0	.	.	.	.	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	hg19	5	175995734	175995734	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDHR2	NM_017675	exon4	c.T180C	p.Y60Y	GACCTATGGGATG	.	98.0	4.0	121.0	0.0	.	152	.	.	Atlas-SNP
UIMC1	51720	hgsc.bcm.edu	hg19	5	176396709	176396709	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UIMC1	NM_016290	exon6	c.358-2A>G	.	CAACTCTGAAACA	.	89.0	4.0	107.0	0.0	.	55	.	.	Atlas-SNP
ZNF346	23567	hgsc.bcm.edu	hg19	5	176477805	176477805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF346	NM_012279	exon5	c.C571T	p.H191Y	CTCTGCCATGCAA	.	71.0	4.0	129.0	0.0	.	24	.	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176523334	176523334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	FGFR4_ENST00000292408,colon,carcinoma,0,2	FGFR4	NM_002011	exon15	c.G1991T	p.R664L	TTGACCGGGTGTA	.	75.0	3.0	127.0	0.0	.	174	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176722236	176722236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NSD1	NM_022455	exon23	c.A7867C	p.S2623R	GAGCAAAGTCCCT	.	110.0	39.0	151.0	0.0	.	416	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176722361	176722361	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NSD1	NM_022455	exon23	c.T7992C	p.S2664S	CTGGTCTCTTGGA	.	96.0	5.0	139.0	0.0	.	416	.	.	Atlas-SNP
F12	2161	hgsc.bcm.edu	hg19	5	176833015	176833015	+	Silent	SNP	G	G	T	rs201132135	bycluster;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	F12	NM_000505	exon3	c.C163A	p.R55R	GCTGCCGGTGGTA	.	87.0	4.0	127.0	0.0	.	35	.	.	Atlas-SNP
ZNF354C	30832	hgsc.bcm.edu	hg19	5	178506014	178506014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF354C	NM_014594	exon5	c.G581T	p.G194V	CATTTGGGAAAGA	.	70.0	5.0	71.0	0.0	.	77	.	.	Atlas-SNP
MGAT1	4245	hgsc.bcm.edu	hg19	5	180219412	180219412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MGAT1	NM_001114617	exon3	c.G560T	p.R187L	TAGTGGCGCGCGA	.	91.0	30.0	110.0	0.0	.	48	.	.	Atlas-SNP
TRIM41	90933	hgsc.bcm.edu	hg19	5	180651055	180651055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM41	NM_201627	exon1	c.T56C	p.V19A	AGGCGGTGTGCGC	.	100.0	4.0	115.0	0.0	.	96	.	.	Atlas-SNP
GNB2L1	10399	hgsc.bcm.edu	hg19	5	180668513	180668513	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GNB2L1	NM_006098	exon3	c.T408C	p.G136G	GCACACACCCAGG	.	76.0	5.0	76.0	0.0	.	22	.	.	Atlas-SNP
SLC22A23	63027	hgsc.bcm.edu	hg19	6	3416016	3416016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC22A23	NM_015482	exon2	c.G728A	p.G243D	AGGTAGCCAAAGA	.	104.0	5.0	174.0	0.0	.	89	.	.	Atlas-SNP
GCNT2	2651	hgsc.bcm.edu	hg19	6	10621632	10621632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GCNT2	NM_145649	exon4	c.C974T	p.A325V	TCAGAGCTATAAA	.	87.0	4.0	90.0	0.0	.	123	.	.	Atlas-SNP
TBC1D7	51256	hgsc.bcm.edu	hg19	6	13316857	13316857	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBC1D7	NM_001143965	exon5	c.C465A	p.T155T	GCGTCGGGTGATC	.	96.0	4.0	101.0	0.0	.	34	.	.	Atlas-SNP
SOX4	6659	hgsc.bcm.edu	hg19	6	21595158	21595158	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SOX4,bladder,carcinoma,0,1	SOX4	NM_003107	exon1	c.G393A	p.R131R	GCCCAGGAAGAAG	.	59.0	4.0	96.0	0.0	.	11	.	.	Atlas-SNP
HIST1H2BA	255626	hgsc.bcm.edu	hg19	6	25727451	25727451	+	Silent	SNP	G	G	T	rs145569895	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIST1H2BA	NM_170610	exon1	c.G315T	p.P105P	ACTGCCGGGAGAG	.	125.0	6.0	124.0	0.0	.	25	.	G|1.000;C|0.000	Atlas-SNP
LOC554223	0	hgsc.bcm.edu	hg19	6	29760408	29760408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001207043	exon2	c.A493G	p.T165A	ACAGGGACCGCCA	.	83.0	5.0	37.0	0.0	.	.	.	.	Atlas-SNP
ATP6V1G2	534	hgsc.bcm.edu	hg19	6	31513188	31513188	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP6V1G2	NM_130463	exon3	c.C354A	p.A118A	GCCCTAGGCAGAA	.	58.0	4.0	56.0	0.0	.	15	.	.	Atlas-SNP
TNF	7124	hgsc.bcm.edu	hg19	6	31544346	31544346	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNF	NM_000594	exon2	c.C222A	p.A74A	TCTGGCCCAGGCA	.	74.0	4.0	73.0	0.0	.	15	.	.	Atlas-SNP
CLIC1	1192	hgsc.bcm.edu	hg19	6	31698776	31698776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CLIC1	NM_001288	exon6	c.T569C	p.V190A	TTACACACCACCT	.	123.0	5.0	96.0	0.0	.	15	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32029479	32029479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNXB	NM_019105	exon21	c.C7187A	p.P2396H	GGGCTGGGGGTCT	.	115.0	5.0	131.0	0.0	.	553	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32038106	32038106	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNXB	NM_019105	exon14	c.C5076A	p.L1692L	CCAGGAGAGGCGC	.	166.0	31.0	187.0	0.0	.	553	.	.	Atlas-SNP
RNF5	6048	hgsc.bcm.edu	hg19	6	32148076	32148076	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF5	NM_006913	exon6	c.C516T	p.F172F	CATCTTCTTCTTT	.	63.0	4.0	44.0	0.0	.	16	.	.	Atlas-SNP
SLC39A7	7922	hgsc.bcm.edu	hg19	6	33170874	33170874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC39A7	NM_006979	exon6	c.C1128A	p.S376R	CTGCAGCAAAAAG	.	84.0	4.0	119.0	0.0	.	32	.	.	Atlas-SNP
DEF6	50619	hgsc.bcm.edu	hg19	6	35288753	35288753	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DEF6	NM_022047	exon10	c.1672+2T>A	.	TGGAGGTGAGAAG	.	93.0	4.0	134.0	0.0	.	36	.	.	Atlas-SNP
FKBP5	2289	hgsc.bcm.edu	hg19	6	35604882	35604882	+	Silent	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FKBP5	NM_001145775	exon4	c.T159G	p.V53V	GACATAAACTTTG	.	117.0	40.0	204.0	0.0	.	64	.	.	Atlas-SNP
SLC26A8	116369	hgsc.bcm.edu	hg19	6	35918964	35918964	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC26A8	NM_052961	exon19	c.G2448T	p.R816R	GGTTTCCCGTATC	.	99.0	4.0	146.0	0.0	.	95	.	.	Atlas-SNP
TREM2	54209	hgsc.bcm.edu	hg19	6	41130810	41130810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TREM2	NM_018965	exon1	c.T11C	p.L4P	AGCCGGAGAGGCT	.	88.0	4.0	139.0	0.0	.	35	.	.	Atlas-SNP
KLHL31	401265	hgsc.bcm.edu	hg19	6	53516499	53516499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHL31	NM_001003760	exon3	c.C1802A	p.P601H	GCCTCGGGTAGCT	.	88.0	5.0	133.0	0.0	.	48	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56350122	56350122	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	DST_ENST00000370769,pharynx,carcinoma,0,1	DST	NM_015548	exon69	c.C13326A	p.I4442I	ATTATCGATCAGA	.	106.0	5.0	150.0	0.0	.	1427	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56365936	56365936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon61	c.A11969G	p.E3990G	TTCTGCTCACTTA	.	77.0	5.0	103.0	0.0	.	1427	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56376052	56376052	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DST	NM_015548	exon54	c.A10854G	p.K3618K	ATCTTCTTTAATT	.	132.0	6.0	164.0	0.0	.	1427	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66094343	66094343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EYS	NM_001142801	exon8	c.G1235A	p.C412Y	AGTTTACAGTGGT	.	83.0	4.0	131.0	0.0	.	527	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	69666002	69666002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BAI3	NM_001704	exon7	c.A1282G	p.T428A	CAGTGCACTGCAG	.	70.0	4.0	93.0	0.0	.	451	.	.	Atlas-SNP
COL19A1	1310	hgsc.bcm.edu	hg19	6	70897949	70897949	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	COL19A1,right_upper_lobe,carcinoma,+1,1	COL19A1	NM_001858	exon47	c.G3027T	p.P1009P	CATTCCGGTAAGT	.	97.0	4.0	120.0	1.0	.	232	.	.	Atlas-SNP
TMEM30A	55754	hgsc.bcm.edu	hg19	6	75970580	75970580	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM30A	NM_018247	exon4	c.A501G	p.P167P	AGCAATTGGTTTG	.	189.0	69.0	263.0	0.0	.	40	.	.	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76542624	76542624	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO6	NM_004999	exon6	c.T457A	p.S153T	GGAGAATCAGGAG	.	84.0	4.0	109.0	0.0	.	124	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84300973	84300973	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNAP91	NM_001242792	exon21	c.T1971C	p.S657S	AGCCTGAGATGCA	.	44.0	4.0	87.0	0.0	.	199	.	.	Atlas-SNP
CASP8AP2	9994	hgsc.bcm.edu	hg19	6	90577355	90577355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CASP8AP2	NM_001137667	exon8	c.C4346T	p.P1449L	CATCGCCTCTGAA	.	79.0	4.0	105.0	0.0	.	108	.	.	Atlas-SNP
BACH2	60468	hgsc.bcm.edu	hg19	6	90661010	90661010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BACH2	NM_001170794	exon5	c.G815T	p.R272M	TGCCCCCTGGCAA	.	95.0	4.0	135.0	0.0	.	224	.	.	Atlas-SNP
MANEA	79694	hgsc.bcm.edu	hg19	6	96034523	96034523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MANEA	NM_024641	exon2	c.G208A	p.E70K	AACAGTGAAACAA	.	96.0	4.0	111.0	0.0	.	58	.	.	Atlas-SNP
BEND3	57673	hgsc.bcm.edu	hg19	6	107390471	107390471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BEND3	NM_001080450	exon5	c.C1924A	p.R642S	GGCAGCGCTCATC	.	77.0	4.0	94.0	0.0	.	70	.	.	Atlas-SNP
WASF1	8936	hgsc.bcm.edu	hg19	6	110426738	110426738	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WASF1	NM_001024935	exon7	c.A585G	p.R195R	AGGTGCTCTTGGC	.	95.0	4.0	103.0	0.0	.	35	.	.	Atlas-SNP
HS3ST5	222537	hgsc.bcm.edu	hg19	6	114383915	114383915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HS3ST5	NM_153612	exon1	c.G95T	p.G32V	AAGCTCCCAACTC	.	100.0	4.0	125.0	0.0	.	80	.	.	Atlas-SNP
ZUFSP	221302	hgsc.bcm.edu	hg19	6	116988328	116988328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZUFSP	NM_145062	exon2	c.A28G	p.T10A	TTACTGTTTCACC	.	99.0	4.0	120.0	0.0	.	46	.	.	Atlas-SNP
GOPC	57120	hgsc.bcm.edu	hg19	6	117884507	117884507	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GOPC	NM_020399	exon9	c.A1299G	p.G433G	CAGGTCTCCATTT	.	96.0	4.0	129.0	0.0	.	29	.	.	Atlas-SNP
RNF146	81847	hgsc.bcm.edu	hg19	6	127607967	127607967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF146	NM_001242850	exon3	c.G209T	p.R70L	GAAAGCGGTGTGC	.	200.0	9.0	243.0	0.0	.	31	.	.	Atlas-SNP
THEMIS	387357	hgsc.bcm.edu	hg19	6	128134090	128134090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	THEMIS	NM_001010923	exon4	c.A1696G	p.T566A	ACTTTGTTTCCTC	.	95.0	4.0	88.0	0.0	.	168	.	.	Atlas-SNP
ENPP3	5169	hgsc.bcm.edu	hg19	6	131996238	131996238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ENPP3	NM_005021	exon9	c.T781C	p.Y261H	GCAATGTATCAAG	.	84.0	4.0	92.0	0.0	.	117	.	.	Atlas-SNP
ENPP3	5169	hgsc.bcm.edu	hg19	6	132068028	132068028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ENPP3	NM_005021	exon25	c.A2560G	p.K854E	CAGGATAAAGTGC	.	151.0	37.0	217.0	0.0	.	117	.	.	Atlas-SNP
VNN2	8875	hgsc.bcm.edu	hg19	6	133071001	133071001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VNN2	NM_004665	exon6	c.T1204C	p.C402R	GTGTGCAGACCTA	.	93.0	4.0	115.0	0.0	.	83	.	.	Atlas-SNP
PEX7	5191	hgsc.bcm.edu	hg19	6	137193356	137193356	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PEX7	NM_000288	exon8	c.T768C	p.S256S	TGCTTCTGTGCTG	.	92.0	5.0	100.0	0.0	.	24	.	.	Atlas-SNP
NHSL1	57224	hgsc.bcm.edu	hg19	6	138745873	138745873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NHSL1	NM_020464	exon7	c.C4178T	p.P1393L	CCGGTGGGTGTCA	.	105.0	5.0	136.0	0.0	.	99	.	.	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151152098	151152098	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHG1	NM_001029884	exon16	c.A1851G	p.T617T	CAACACATGCCCT	.	62.0	4.0	114.0	0.0	.	97	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157502170	157502170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARID1B	NM_020732	exon12	c.A3203G	p.E1068G	AGCCAGAGAGAAA	.	38.0	4.0	73.0	0.0	.	320	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157502190	157502190	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ARID1B_ENST00000346085,NS,adenocarcinoma,0,2	ARID1B	NM_020732	exon12	c.C3223A	p.R1075R	GTCGACCGATACC	.	43.0	3.0	78.0	0.0	.	320	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159618551	159618551	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FNDC1	NM_032532	exon2	c.C198A	p.T66T	TGCTACCAGTAGA	.	96.0	4.0	134.0	0.0	.	250	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160450671	160450671	+	Missense_Mutation	SNP	C	C	A	rs373279911	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGF2R	NM_000876	exon7	c.C866A	p.P289Q	TTTGCCCGTCGGA	.	125.0	5.0	168.0	0.0	.	251	.	.	Atlas-SNP
SLC22A2	6582	hgsc.bcm.edu	hg19	6	160663434	160663434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC22A2	NM_003058	exon8	c.A1280G	p.D427G	TGTAGATCTAAGA	.	61.0	4.0	124.0	0.0	.	78	.	.	Atlas-SNP
SLC22A2	6582	hgsc.bcm.edu	hg19	6	160666525	160666525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC22A2	NM_003058	exon6	c.A1010G	p.D337G	ACCAAGTCAAGAA	.	79.0	4.0	85.0	0.0	.	78	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161508771	161508771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP3K4	NM_006724	exon10	c.G2608A	p.A870T	ACTCTTGCTGAGG	.	92.0	4.0	129.0	0.0	.	364	.	.	Atlas-SNP
RNASET2	8635	hgsc.bcm.edu	hg19	6	167356557	167356557	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNASET2	NM_003730	exon5	c.G282A	p.R94R	GTATGCCCTCATT	.	70.0	4.0	72.0	0.0	.	18	.	.	Atlas-SNP
ADAP1	11033	hgsc.bcm.edu	hg19	7	975141	975141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAP1	NM_006869	exon2	c.A83G	p.D28G	TCGGGATCTGCAA	.	93.0	4.0	143.0	0.0	.	23	.	.	Atlas-SNP
IQCE	23288	hgsc.bcm.edu	hg19	7	2644523	2644523	+	Silent	SNP	G	G	A	rs201471152	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IQCE	NM_152558	exon19	c.G1641A	p.V547V	GGCTGTGGTGCTT	.	91.0	4.0	111.0	0.0	.	66	.	G|1.000;T|0.000	Atlas-SNP
RADIL	55698	hgsc.bcm.edu	hg19	7	4917718	4917718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RADIL	NM_018059	exon2	c.A53G	p.K18R	TGCCGCTTCAGTT	.	83.0	4.0	98.0	0.0	.	110	.	.	Atlas-SNP
FAM220A	84792	hgsc.bcm.edu	hg19	7	6370275	6370275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001037163	exon2	c.C511A	p.P171T	TTGGTGGGTCATC	.	118.0	5.0	139.0	0.0	.	.	.	.	Atlas-SNP
DAGLB	221955	hgsc.bcm.edu	hg19	7	6474496	6474496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DAGLB	NM_139179	exon4	c.T575C	p.V192A	TCCCACACGCTTG	.	114.0	6.0	190.0	0.0	.	74	.	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	hg19	7	6561059	6561059	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRID2IP	NM_001145118	exon7	c.1084+1G>A	.	GTCTCACCACTGG	.	97.0	5.0	144.0	0.0	.	82	.	.	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	hg19	7	20444277	20444277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITGB8	NM_002214	exon11	c.T1714C	p.C572R	GGCAGATGCCAAT	.	100.0	6.0	136.0	0.0	.	159	.	.	Atlas-SNP
CBX3	11335	hgsc.bcm.edu	hg19	7	26248156	26248156	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CBX3	NM_016587	exon4	c.C311A	p.S104X	GCAAATCAAAGAA	.	116.0	5.0	139.0	0.0	.	25	.	.	Atlas-SNP
SKAP2	8935	hgsc.bcm.edu	hg19	7	26779530	26779530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SKAP2	NM_003930	exon5	c.G361A	p.G121S	GGTAGCCAGCCTT	.	99.0	4.0	162.0	0.0	.	40	.	.	Atlas-SNP
CREB5	9586	hgsc.bcm.edu	hg19	7	28547292	28547292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CREB5,colon,carcinoma,0,2	CREB5	NM_182898	exon4	c.C228A	p.S76R	CTTCAGCGAGCTG	.	119.0	5.0	162.0	0.0	.	115	.	.	Atlas-SNP
VPS41	27072	hgsc.bcm.edu	hg19	7	38798051	38798051	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS41	NM_014396	exon18	c.G1453T	p.G485X	GATCTCCAGGCCA	.	95.0	4.0	150.0	0.0	.	102	.	.	Atlas-SNP
INHBA	3624	hgsc.bcm.edu	hg19	7	41729530	41729530	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	INHBA,NS,carcinoma,0,1	INHBA	NM_002192	exon3	c.C999A	p.I333I	CCAGCCGATGTCC	.	32.0	2.0	50.0	1.0	.	118	.	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	hg19	7	45125286	45125286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NACAD	NM_001146334	exon2	c.T493C	p.S165P	GAGGGGAAGGCAC	.	80.0	4.0	78.0	0.0	.	44	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47870945	47870945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon42	c.A6343G	p.S2115G	CACTGCTGGGTGC	.	92.0	4.0	129.0	0.0	.	328	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47874578	47874578	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon39	c.C6114A	p.T2038T	TGCCTCGGTCTGT	.	84.0	4.0	109.0	0.0	.	328	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47898327	47898327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon27	c.A4306G	p.K1436E	CCTCCTTCGAGTT	.	77.0	4.0	80.0	0.0	.	328	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47947753	47947753	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKD1L1	NM_138295	exon9	c.C1323A	p.A441A	AGACACGGCCTCA	.	75.0	4.0	75.0	0.0	.	328	.	.	Atlas-SNP
ZNF107	51427	hgsc.bcm.edu	hg19	7	64166707	64166707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF107	NM_016220	exon7	c.T25C	p.S9P	GTAATGTCTTTTC	.	63.0	4.0	78.0	0.0	.	107	.	.	Atlas-SNP
GUSB	2990	hgsc.bcm.edu	hg19	7	65435344	65435344	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GUSB	NM_000181	exon9	c.C1401A	p.I467I	GTGAGCGATCACC	.	89.0	5.0	82.0	0.0	.	52	.	.	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	hg19	7	70880904	70880904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WBSCR17	NM_022479	exon4	c.G619A	p.V207I	GAGTATGTCCACA	.	86.0	21.0	154.0	0.0	.	208	.	.	Atlas-SNP
FGL2	10875	hgsc.bcm.edu	hg19	7	76828978	76828978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FGL2	NM_006682	exon1	c.A133G	p.S45G	CTCTGCTTTCTAG	.	89.0	4.0	112.0	0.0	.	40	.	.	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	hg19	7	91652178	91652178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.,2	AKAP9	NM_005751	exon14	c.A4003C	p.K1335Q	AAAACTAAACTTG	.	116.0	7.0	50.0	2.0	.	788	.	.	Atlas-SNP
CDK6	1021	hgsc.bcm.edu	hg19	7	92300836	92300836	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDK6	NM_001259	exon5	c.G551A	p.W184X	CTGTACCACAGCG	.	137.0	6.0	92.0	0.0	.	30	.	.	Atlas-SNP
ARPC1B	10095	hgsc.bcm.edu	hg19	7	98988562	98988562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARPC1B	NM_005720	exon6	c.A547G	p.T183A	GCACCCACCCCGT	.	70.0	4.0	36.0	0.0	.	41	.	.	Atlas-SNP
ZNF655	79027	hgsc.bcm.edu	hg19	7	99169920	99169920	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF655	NM_001085368	exon4	c.G294T	p.S98S	AATTTCGGAAGAA	.	123.0	5.0	64.0	0.0	.	75	.	.	Atlas-SNP
TAF6	6878	hgsc.bcm.edu	hg19	7	99709449	99709449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TAF6,NS,carcinoma,0,1	TAF6	NM_001190415	exon9	c.C913A	p.R305S	TCACACGGACCTG	.	125.0	5.0	154.0	0.0	.	55	.	.	Atlas-SNP
C7orf43	55262	hgsc.bcm.edu	hg19	7	99754538	99754538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C7orf43	NM_018275	exon6	c.A923G	p.N308S	AGGGCATTCAGCG	.	58.0	4.0	53.0	0.0	.	28	.	.	Atlas-SNP
AGFG2	3268	hgsc.bcm.edu	hg19	7	100161852	100161852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AGFG2	NM_006076	exon11	c.G1312T	p.G438W	TCCTTCGGGGACT	.	93.0	4.0	117.0	0.0	.	44	.	.	Atlas-SNP
LRCH4	4034	hgsc.bcm.edu	hg19	7	100175328	100175328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRCH4	NM_002319	exon9	c.A1075G	p.S359G	CATGGCTGTCGAT	.	72.0	4.0	67.0	0.0	.	53	.	.	Atlas-SNP
SLC12A9	56996	hgsc.bcm.edu	hg19	7	100454532	100454532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A9	NM_001267812	exon5	c.A491G	p.Y164C	AGGGCTACGGCTG	.	84.0	4.0	83.0	0.0	.	81	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100675798	100675798	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MUC17	NM_001040105	exon3	c.T1101C	p.T367T	GACCACTTCTACT	.	83.0	4.0	70.0	0.0	.	804	.	.	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	hg19	7	101840082	101840082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CUX1	NM_001202543	exon15	c.C1424A	p.S475Y	GCTCATCCCTGGC	.	146.0	6.0	162.0	0.0	.	253	.	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107706357	107706357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LAMB4	NM_007356	exon21	c.G2686T	p.D896Y	AACCATCAATACA	.	81.0	5.0	65.0	0.0	.	253	.	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107720067	107720067	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LAMB4	NM_007356	exon15	c.T1866C	p.I622I	AATGGCAATGGTG	.	49.0	4.0	74.0	0.0	.	253	.	.	Atlas-SNP
IMPDH1	3614	hgsc.bcm.edu	hg19	7	128034563	128034563	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IMPDH1	NM_000883	exon15	c.A1641G	p.A547A	GATGCCTGCTATG	.	91.0	4.0	96.0	0.0	.	38	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128494726	128494726	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FLNC	NM_001458	exon41	c.C6987A	p.A2329A	TGTGGCCGGCGTG	.	95.0	4.0	113.0	0.0	.	339	.	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138554406	138554406	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	KIAA1549_ENST00000422774,NS,carcinoma,0,2	KIAA1549	NM_020910	exon14	c.C4653T	p.D1551D	CAGGTCGTCTACC	.	194.0	31.0	161.0	0.0	.	314	.	.	Atlas-SNP
TRPV6	55503	hgsc.bcm.edu	hg19	7	142574527	142574527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRPV6	NM_018646	exon5	c.A551G	p.E184G	CCATGCTCAATGA	.	119.0	5.0	148.0	0.0	.	108	.	.	Atlas-SNP
AGAP3	116988	hgsc.bcm.edu	hg19	7	150814236	150814236	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AGAP3	NM_001042535	exon3	c.A445G	p.T149A	TATCTGACGGGGA	.	100.0	4.0	121.0	0.0	.	121	.	.	Atlas-SNP
ASB10	136371	hgsc.bcm.edu	hg19	7	150878505	150878505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ASB10	NM_001142459	exon3	c.G625T	p.G209C	ACCGACCATCCAC	.	94.0	4.0	120.0	0.0	.	99	.	.	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154738503	154738503	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAXIP1	NM_007349	exon18	c.A2943G	p.T981T	TCCAGGTGTGATG	.	49.0	4.0	44.0	0.0	.	150	.	.	Atlas-SNP
UBE3C	9690	hgsc.bcm.edu	hg19	7	156961778	156961778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBE3C	NM_014671	exon3	c.C157A	p.Q53K	ATTATCCAGTCAT	.	73.0	4.0	90.0	0.0	.	124	.	.	Atlas-SNP
PTPRN2	5799	hgsc.bcm.edu	hg19	7	157959974	157959974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRN2	NM_130843	exon6	c.C559A	p.R187S	AGAAGCGGTCATC	.	95.0	5.0	71.0	0.0	.	243	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2967694	2967694	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CSMD1	NM_033225	exon43	c.T6594C	p.D2198D	AATGTAATCGTTG	.	52.0	4.0	72.0	0.0	.	1469	.	.	Atlas-SNP
SGK223	0	hgsc.bcm.edu	hg19	8	8185764	8185764	+	Missense_Mutation	SNP	G	G	T	rs150737128	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001080826	exon4	c.C2528A	p.P843H	AGCTTGGGGCTTG	.	72.0	4.0	149.0	0.0	.	.	.	G|1.000;A|0.000	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10468763	10468763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	RP1L1,right_upper_lobe,carcinoma,0,1	RP1L1	NM_178857	exon4	c.C2845T	p.P949S	AGCGGGGCAGAGA	.	44.0	2.0	103.0	0.0	.	453	.	.	Atlas-SNP
MSR1	4481	hgsc.bcm.edu	hg19	8	15967718	15967718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MSR1,NS,carcinoma,0,1	MSR1	NM_138715	exon10	c.C1232T	p.P411L	CATATTGGACCAG	.	73.0	3.0	132.0	0.0	.	140	.	.	Atlas-SNP
EFHA2	286097	hgsc.bcm.edu	hg19	8	16921741	16921741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EFHA2	NM_181723	exon2	c.C530A	p.P177H	ATGAGCCCAAAGG	.	87.0	4.0	130.0	0.0	.	60	.	.	Atlas-SNP
VPS37A	137492	hgsc.bcm.edu	hg19	8	17126365	17126365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS37A	NM_152415	exon4	c.T316C	p.F106L	TTTCAGTTTACAA	.	79.0	4.0	117.0	0.0	.	22	.	.	Atlas-SNP
EGR3	1960	hgsc.bcm.edu	hg19	8	22548215	22548215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGR3	NM_004430	exon2	c.G935A	p.R312Q	AAGCTCCGCATGC	.	100.0	4.0	207.0	0.0	.	33	.	.	Atlas-SNP
TNFRSF10D	8793	hgsc.bcm.edu	hg19	8	23003279	23003279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNFRSF10D	NM_003840	exon5	c.T638C	p.L213P	ATGATAAGGTAGT	.	56.0	4.0	101.0	0.0	.	21	.	.	Atlas-SNP
DPYSL2	1808	hgsc.bcm.edu	hg19	8	26439530	26439530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPYSL2	NM_001197293	exon2	c.C400A	p.Q134K	GATGACCAGTCGT	.	85.0	4.0	126.0	0.0	.	49	.	.	Atlas-SNP
CHRNA2	1135	hgsc.bcm.edu	hg19	8	27320754	27320754	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHRNA2	NM_000742	exon6	c.C1206T	p.H402H	CAGCCAGTGATAA	.	37.0	4.0	79.0	0.0	.	48	.	.	Atlas-SNP
ESCO2	157570	hgsc.bcm.edu	hg19	8	27633887	27633887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ESCO2	NM_001017420	exon3	c.A62G	p.H21R	TTTTACACTTCAC	.	79.0	4.0	143.0	0.0	.	50	.	.	Atlas-SNP
HTRA4	203100	hgsc.bcm.edu	hg19	8	38845473	38845473	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HTRA4	NM_153692	exon9	c.C1287T	p.H429H	AGATCACGATGTA	.	46.0	4.0	87.0	0.0	.	25	.	.	Atlas-SNP
ADAM9	8754	hgsc.bcm.edu	hg19	8	38934925	38934925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM9	NM_003816	exon16	c.G1876A	p.G626R	GGTGCTGGAAAGG	.	85.0	4.0	173.0	0.0	.	66	.	.	Atlas-SNP
ADAM2	2515	hgsc.bcm.edu	hg19	8	39678655	39678655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM2	NM_001464	exon6	c.A379G	p.I127V	GTTCTATTCCATA	.	99.0	5.0	163.0	0.0	.	124	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41790607	41790607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001099412	exon18	c.T5131C	p.F1711L	GGGTGAAACTGTT	.	72.0	4.0	185.0	0.0	.	.	.	.	Atlas-SNP
POLB	5423	hgsc.bcm.edu	hg19	8	42214709	42214709	+	Missense_Mutation	SNP	A	A	G	rs200554507	bycluster	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POLB	NM_002690	exon8	c.A445G	p.R149G	GAAAAAAGAATTC	.	99.0	4.0	181.0	0.0	.	60	.	A|0.999;G|0.001	Atlas-SNP
PRKDC	5591	hgsc.bcm.edu	hg19	8	48707064	48707064	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKDC	NM_001081640	exon75	c.10458-2A>T	.	GAGATCTAAAACA	.	73.0	4.0	81.0	0.0	.	394	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61765595	61765595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHD7	NM_017780	exon31	c.C6311T	p.A2104V	TTGGTGCTGCTAA	.	220.0	95.0	241.0	1.0	.	534	.	.	Atlas-SNP
RRS1	23212	hgsc.bcm.edu	hg19	8	67342183	67342183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RRS1	NM_015169	exon1	c.C817T	p.R273C	CTGCTTCGTGTCA	.	73.0	5.0	58.0	0.0	.	13	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69104651	69104651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PREX2,colon,carcinoma,0,1	PREX2	NM_024870	exon37	c.G4495A	p.A1499T	GCCTGTGCAAACA	.	68.0	17.0	73.0	0.0	.	614	.	.	Atlas-SNP
LY96	23643	hgsc.bcm.edu	hg19	8	74941217	74941217	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LY96	NM_015364	exon5	c.T411C	p.A137A	TGAAGCTATTTCT	.	94.0	4.0	84.0	0.0	.	17	.	.	Atlas-SNP
MRPS28	28957	hgsc.bcm.edu	hg19	8	80942312	80942312	+	Silent	SNP	G	G	T	rs147337080	bycluster;byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MRPS28	NM_014018	exon1	c.C172A	p.R58R	AGTGCCGCTCCAA	.	89.0	4.0	58.0	0.0	.	11	.	G|0.997;A|0.003	Atlas-SNP
WWP1	11059	hgsc.bcm.edu	hg19	8	87439874	87439874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WWP1	NM_007013	exon11	c.G1160T	p.W387L	GTAGTTGGGAAAG	.	130.0	6.0	129.0	0.0	.	97	.	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95531221	95531221	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1429	NM_015496	exon9	c.A2505G	p.E835E	CAAGGCTTCTTTG	.	68.0	4.0	64.0	0.0	.	176	.	.	Atlas-SNP
MTDH	92140	hgsc.bcm.edu	hg19	8	98656988	98656988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MTDH	NM_178812	exon1	c.C254T	p.P85L	GGAGCCCGCCCCG	.	32.0	4.0	28.0	0.0	.	54	.	.	Atlas-SNP
FBXO43	286151	hgsc.bcm.edu	hg19	8	101153750	101153750	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	FBXO43_ENST00000428847,colon,carcinoma,0,3	FBXO43	NM_001029860	exon2	c.A732T	p.L244L	TTCAAATAGGCTA	.	50.0	2.0	50.0	1.0	.	155	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110457403	110457403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PKHD1L1	NM_177531	exon38	c.G5305T	p.G1769X	ATTGAAGGAGAAG	.	59.0	4.0	62.0	0.0	.	522	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113650925	113650925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CSMD3_ENST00000343508,left_upper_lobe,carcinoma,0,2	CSMD3	NM_198123	exon21	c.G3526A	p.E1176K	TCTCACCAGAGAA	.	25.0	2.0	26.0	0.0	.	2325	.	.	Atlas-SNP
KIAA0196	9897	hgsc.bcm.edu	hg19	8	126093910	126093910	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA0196	NM_014846	exon5	c.C511A	p.R171R	TGTATCGGTAGTA	.	121.0	5.0	114.0	0.0	.	90	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131833641	131833641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCY8	NM_001115	exon13	c.T2701C	p.S901P	GCAGTGATACCTC	.	97.0	4.0	88.0	0.0	.	291	.	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	hg19	8	133153569	133153569	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNQ3	NM_004519	exon10	c.G1272A	p.L424L	GAGACCCAGCTTT	.	105.0	50.0	85.0	0.0	.	164	.	.	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141753415	141753415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTK2	NM_005607	exon20	c.G1715T	p.R572L	ACATTCCGAGCAG	.	91.0	4.0	76.0	0.0	.	311	.	.	Atlas-SNP
GPR20	2843	hgsc.bcm.edu	hg19	8	142366956	142366956	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR20	NM_005293	exon2	c.C1068A	p.P356P	AGCCTCGGGCCCA	.	73.0	5.0	57.0	0.0	.	43	.	.	Atlas-SNP
TSNARE1	203062	hgsc.bcm.edu	hg19	8	143436037	143436037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSNARE1	NM_145003	exon2	c.C49T	p.P17S	CGAAAGGGCCACG	.	64.0	5.0	58.0	0.0	.	59	.	.	Atlas-SNP
BAI1	575	hgsc.bcm.edu	hg19	8	143603470	143603470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BAI1	NM_001702	exon20	c.G3169A	p.G1057S	TGCCTGGGCTGGG	.	57.0	4.0	64.0	0.0	.	146	.	.	Atlas-SNP
LYNX1	66004	hgsc.bcm.edu	hg19	8	143846491	143846491	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	LYNX1_ENST00000317543,NS,carcinoma,0,2	LYNX1	NM_023946	exon4	c.C222T	p.C74C	CCTCAGGCATCTG	.	39.0	3.0	71.0	0.0	.	40	.	.	Atlas-SNP
PUF60	22827	hgsc.bcm.edu	hg19	8	144904074	144904074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PUF60	NM_078480	exon3	c.T121C	p.S41P	TGATGGAGTCTGT	.	61.0	4.0	61.0	0.0	.	26	.	.	Atlas-SNP
EPPK1	83481	hgsc.bcm.edu	hg19	8	144942463	144942463	+	Silent	SNP	G	G	T	rs377506188	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPPK1	NM_031308	exon1	c.C4959A	p.T1653T	GGGGTCGGTGTAG	.	152.0	7.0	146.0	0.0	.	199	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144996328	144996328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEC	NM_201380	exon32	c.A8072G	p.E2691G	CGCGCCTCCTCCA	.	48.0	4.0	50.0	0.0	.	1144	.	.	Atlas-SNP
EXOSC4	54512	hgsc.bcm.edu	hg19	8	145135446	145135446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EXOSC4	NM_019037	exon3	c.T680C	p.L227P	ACACCCTCTTAGA	.	54.0	6.0	71.0	0.0	.	19	.	.	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	hg19	8	145622853	145622853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPSF1	NM_013291	exon22	c.A2234G	p.E745G	AGCATCTCCTCCT	.	78.0	4.0	70.0	0.0	.	92	.	.	Atlas-SNP
SLC39A4	55630	hgsc.bcm.edu	hg19	8	145640174	145640174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SLC39A4_ENST00000276833,NS,carcinoma,0,2	SLC39A4	NM_130849	exon5	c.A911G	p.Q304R	CTCAGCTGCTGTT	.	75.0	3.0	94.0	1.0	.	54	.	.	Atlas-SNP
TONSL	4796	hgsc.bcm.edu	hg19	8	145659654	145659654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TONSL	NM_013432	exon21	c.C3094A	p.Q1032K	CCTGTTGGTGCTC	.	90.0	4.0	125.0	0.0	.	128	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2056807	2056807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SMARCA2	NM_139045	exon7	c.A1309G	p.K437E	CAGCAGAAGATTG	.	65.0	4.0	107.0	0.0	.	313	.	.	Atlas-SNP
ERMP1	79956	hgsc.bcm.edu	hg19	9	5830996	5830996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERMP1	NM_024896	exon2	c.C371A	p.P124H	GTCCTGGGGCCAA	.	89.0	4.0	134.0	0.0	.	63	.	.	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	hg19	9	16552604	16552604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BNC2	NM_017637	exon5	c.A593G	p.K198R	TCTTGCTTCAGGA	.	77.0	5.0	163.0	0.0	.	166	.	.	Atlas-SNP
CNTLN	54875	hgsc.bcm.edu	hg19	9	17332673	17332673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNTLN	NM_017738	exon10	c.A1589G	p.K530R	TACAGAAGCTGAG	.	137.0	6.0	244.0	0.0	.	128	.	.	Atlas-SNP
SH3GL2	6456	hgsc.bcm.edu	hg19	9	17791315	17791315	+	Silent	SNP	G	G	T	rs150625805	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SH3GL2	NM_003026	exon7	c.G711T	p.T237T	AGTCACGGTCAGA	.	91.0	4.0	234.0	0.0	.	60	.	G|0.998;A|0.002	Atlas-SNP
FOCAD	54914	hgsc.bcm.edu	hg19	9	20907148	20907148	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017794	exon24	c.2626-1G>T	.	CCCATAGGTTCAT	.	64.0	4.0	80.0	0.0	.	.	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27212778	27212778	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEK	NM_000459	exon17	c.G2760T	p.L920L	TGTGCTGGAGACG	.	84.0	4.0	141.0	0.0	.	250	.	.	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	hg19	9	33364038	33364038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NFX1	NM_147133	exon20	c.G2904T	p.E968D	CAGTGAGGATTCT	.	136.0	6.0	173.0	0.0	.	85	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37737222	37737222	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FRMPD1	NM_014907	exon14	c.C1531A	p.R511R	GCGCACCGGGTAT	.	106.0	5.0	122.0	0.0	.	237	.	.	Atlas-SNP
TJP2	9414	hgsc.bcm.edu	hg19	9	71842715	71842715	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TJP2	NM_001170416	exon8	c.T1338C	p.S446S	ATTTTCTCCAGAG	.	91.0	5.0	142.0	0.0	.	120	.	.	Atlas-SNP
FAM189A2	9413	hgsc.bcm.edu	hg19	9	72003281	72003281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM189A2	NM_004816	exon10	c.A1064G	p.E355G	TCCATGAACTTGT	.	94.0	4.0	140.0	0.0	.	55	.	.	Atlas-SNP
MAMDC2	256691	hgsc.bcm.edu	hg19	9	72728033	72728033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAMDC2	NM_153267	exon5	c.T628C	p.F210L	CACACCTTCAAGA	.	96.0	4.0	120.0	0.0	.	55	.	.	Atlas-SNP
PCSK5	5125	hgsc.bcm.edu	hg19	9	78749051	78749051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCSK5	NM_006200	exon10	c.A1235G	p.Q412R	ACGTACAGCATGT	.	72.0	4.0	73.0	0.0	.	329	.	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84608274	84608274	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001001670	exon4	c.C2889A	p.S963S	TAAGTCCCGTAGT	.	89.0	4.0	107.0	0.0	.	.	.	.	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	hg19	9	87339221	87339221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NTRK2	NM_001018065	exon8	c.C803T	p.A268V	GTGTGGCGGAAAA	.	140.0	35.0	188.0	0.0	.	331	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96079837	96079837	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WNK2	NM_006648	exon28	c.T6552C	p.R2184R	GCCACGTCTGCCC	.	96.0	4.0	131.0	0.0	.	277	.	.	Atlas-SNP
PTPDC1	138639	hgsc.bcm.edu	hg19	9	96827014	96827014	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPDC1	.	.	.	.	TCCAACAGACTAC	.	46.0	4.0	78.0	0.0	.	134	.	.	Atlas-SNP
HIATL1	84641	hgsc.bcm.edu	hg19	9	97218607	97218607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HIATL1	NM_032558	exon10	c.T1114C	p.S372P	GCAGAGTCAGATC	.	84.0	4.0	112.0	0.0	.	31	.	.	Atlas-SNP
ERCC6L2	375748	hgsc.bcm.edu	hg19	9	98643510	98643510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001010895	exon2	c.G439A	p.G147R	CTTTATGGACACT	.	79.0	4.0	96.0	0.0	.	.	.	.	Atlas-SNP
CCDC180	0	hgsc.bcm.edu	hg19	9	100080840	100080840	+	Missense_Mutation	SNP	G	G	T	rs368120179	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	KIAA1529,colon,carcinoma,0,1	.	NM_020893	exon10	c.G1187T	p.R396L	AAAGGCGGCTGAA	.	26.0	2.0	36.0	0.0	.	.	.	.	Atlas-SNP
C9orf156	51531	hgsc.bcm.edu	hg19	9	100667081	100667081	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C9orf156	NM_016481	exon5	c.C1260A	p.I420I	CGGCTTGATCCTC	.	106.0	6.0	122.0	0.0	.	35	.	.	Atlas-SNP
TEX10	54881	hgsc.bcm.edu	hg19	9	103090232	103090232	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEX10	NM_001161584	exon8	c.A1647G	p.K549K	TAACACTTTACTA	.	113.0	5.0	113.0	0.0	.	99	.	.	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767096	105767096	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CYLC2,NS,carcinoma,0,1	CYLC2	NM_001340	exon4	c.A300G	p.K100K	TCTCAAACCAACT	.	46.0	2.0	65.0	0.0	.	109	.	.	Atlas-SNP
SMC2	10592	hgsc.bcm.edu	hg19	9	106877083	106877083	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SMC2L1,NS,carcinoma,0,2	SMC2	NM_006444	exon13	c.A1644G	p.R548R	AGAACGACTCTAC	.	81.0	4.0	99.0	2.0	.	127	.	.	Atlas-SNP
OR13D1	286365	hgsc.bcm.edu	hg19	9	107457666	107457666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR13D1	NM_001004484	exon1	c.T964C	p.Y322H	ATCATCTATAGCC	.	90.0	4.0	137.0	0.0	.	42	.	.	Atlas-SNP
RAD23B	5887	hgsc.bcm.edu	hg19	9	110045933	110045933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAD23B	NM_002874	exon1	c.T23C	p.L8P	AGACCCTCCAGCA	.	39.0	4.0	76.0	0.0	.	31	.	.	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	hg19	9	111665171	111665171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKBKAP	NM_003640	exon16	c.T1802C	p.V601A	AACCGAACAGGAA	.	120.0	6.0	175.0	0.0	.	122	.	.	Atlas-SNP
IKBKAP	8518	hgsc.bcm.edu	hg19	9	111685163	111685163	+	Missense_Mutation	SNP	G	G	A	rs202179488	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IKBKAP	NM_003640	exon6	c.C511T	p.H171Y	ATCCATGGAACTG	.	100.0	4.0	110.0	0.0	.	122	.	G|0.999;C|0.001	Atlas-SNP
EPB41L4B	54566	hgsc.bcm.edu	hg19	9	112013790	112013790	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPB41L4B	NM_019114	exon13	c.A1281G	p.A427A	GTTGCTTGCTATA	.	121.0	5.0	135.0	0.0	.	111	.	.	Atlas-SNP
PALM2-AKAP2	445815	hgsc.bcm.edu	hg19	9	112899145	112899145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PALM2-AKAP2	NM_007203	exon8	c.A1321G	p.R441G	AAAGTGAGGCCTT	.	93.0	4.0	130.0	0.0	.	117	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114172333	114172333	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA0368	NM_001080398	exon24	c.A3072G	p.K1024K	TGTTTCTTTACTG	.	122.0	5.0	109.0	0.0	.	144	.	.	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114480520	114480520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C9orf84	NM_173521	exon14	c.A1988G	p.H663R	AGAAGATGTAAGA	.	80.0	4.0	133.0	0.0	.	207	.	.	Atlas-SNP
PRPF4	9128	hgsc.bcm.edu	hg19	9	116053881	116053881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRPF4	NM_004697	exon14	c.G1510A	p.G504R	TCCGATGGGCAGC	.	78.0	4.0	135.0	0.0	.	56	.	.	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	hg19	9	117068856	117068856	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL27A1	NM_032888	exon58	c.C4995A	p.T1665T	TAAAACCTTACAC	.	84.0	4.0	77.0	0.0	.	200	.	.	Atlas-SNP
FBXW2	26190	hgsc.bcm.edu	hg19	9	123526947	123526947	+	Missense_Mutation	SNP	C	C	T	rs374464211		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXW2	NM_012164	exon8	c.G1255A	p.E419K	ATGCTTCGCCTGC	.	95.0	5.0	115.0	0.0	.	34	.	.	Atlas-SNP
FBXW2	26190	hgsc.bcm.edu	hg19	9	123526956	123526956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXW2	NM_012164	exon8	c.C1246A	p.L416M	CTGCCAGGAAGCT	.	96.0	4.0	105.0	0.0	.	34	.	.	Atlas-SNP
PHF19	26147	hgsc.bcm.edu	hg19	9	123636996	123636996	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHF19	NM_015651	exon2	c.A24G	p.P8P	AGTCCCTGGATCC	.	63.0	4.0	58.0	0.0	.	47	.	.	Atlas-SNP
SCAI	286205	hgsc.bcm.edu	hg19	9	127781126	127781126	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCAI	NM_173690	exon10	c.A882G	p.G294G	CAACTGTCCCACA	.	82.0	4.0	105.0	0.0	.	84	.	.	Atlas-SNP
FAM129B	64855	hgsc.bcm.edu	hg19	9	130272586	130272586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM129B	NM_022833	exon9	c.T1000C	p.C334R	GCACGCACACCTC	.	66.0	4.0	108.0	0.0	.	84	.	.	Atlas-SNP
C9orf117	286207	hgsc.bcm.edu	hg19	9	130473684	130473684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C9orf117	NM_001012502	exon4	c.T764C	p.L255P	AGCAGCTCAAGGG	.	70.0	4.0	121.0	0.0	.	21	.	.	Atlas-SNP
LCN2	3934	hgsc.bcm.edu	hg19	9	130911932	130911932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LCN2	NM_005564	exon1	c.A128G	p.Q43R	ACTTCCAGGACAA	.	99.0	5.0	110.0	0.0	.	12	.	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131337065	131337065	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPTAN1	NM_003127	exon4	c.G475T	p.E159X	GAATGTGAGGACG	.	100.0	4.0	124.0	0.0	.	266	.	.	Atlas-SNP
NUP188	23511	hgsc.bcm.edu	hg19	9	131765691	131765691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP188	NM_015354	exon38	c.G4392T	p.K1464N	CATGAAGGAGTGG	.	46.0	4.0	67.0	0.0	.	140	.	.	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132642472	132642472	+	Missense_Mutation	SNP	C	C	A	rs200854092	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP20	NM_001008563	exon25	c.C2665A	p.R889S	GCCATCCGCCAGA	.	50.0	4.0	112.0	0.0	.	186	.	C|1.000;T|0.000	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134049687	134049687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP214	NM_005085	exon22	c.G3139A	p.G1047S	TCACCTGGTGTGA	.	93.0	4.0	153.0	0.0	.	166	.	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135218087	135218087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETX	NM_015046	exon5	c.C488A	p.P163H	TCATTGGGATGGA	.	74.0	5.0	104.0	0.0	.	234	.	.	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135779080	135779080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSC1	NM_000368	exon17	c.G2166T	p.K722N	GATCACCTTGCGG	.	82.0	33.0	94.0	0.0	.	167	.	.	Atlas-SNP
GBGT1	26301	hgsc.bcm.edu	hg19	9	136029419	136029419	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.,1	GBGT1	NM_021996	exon7	c.C589A	p.R197R	CCTCCCGGTGAGC	.	99.0	4.0	114.0	0.0	.	25	.	.	Atlas-SNP
GBGT1	26301	hgsc.bcm.edu	hg19	9	136031411	136031411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GBGT1	NM_021996	exon4	c.C179A	p.P60H	ACCACGGGCTGGA	.	83.0	4.0	149.0	0.0	.	25	.	.	Atlas-SNP
CACFD1	11094	hgsc.bcm.edu	hg19	9	136328625	136328625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACFD1	NM_001242370	exon2	c.T142C	p.F48L	GGCCTCTTCAACT	.	93.0	4.0	119.0	0.0	.	1	.	.	Atlas-SNP
GPSM1	26086	hgsc.bcm.edu	hg19	9	139250846	139250846	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPSM1	NM_001145638	exon13	c.C1665T	p.I555I	CCTCATCGCCAGC	.	65.0	19.0	76.0	0.0	.	50	.	.	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	hg19	9	139370230	139370230	+	Missense_Mutation	SNP	G	G	T	rs371898934	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEC16A	NM_014866	exon3	c.C1838A	p.P613Q	TTTACCGGTTCGA	.	51.0	4.0	84.0	0.0	.	249	.	.	Atlas-SNP
GRIN1	2902	hgsc.bcm.edu	hg19	9	140036523	140036523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIN1	NM_000832	exon2	c.C317T	p.P106L	CCACCCCTGTCTC	.	191.0	32.0	287.0	0.0	.	51	.	.	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	hg19	9	140077667	140077667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANAPC2	NM_013366	exon6	c.T1196C	p.L399P	ATATAGAGGGTGA	.	93.0	5.0	136.0	0.0	.	57	.	.	Atlas-SNP
ANAPC2	29882	hgsc.bcm.edu	hg19	9	140082090	140082090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANAPC2	NM_013366	exon2	c.A583G	p.T195A	GGTCTGTGCCCCC	.	95.0	4.0	148.0	0.0	.	57	.	.	Atlas-SNP
TOR4A	54863	hgsc.bcm.edu	hg19	9	140173587	140173587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017723	exon2	c.A446G	p.D149G	GCTATGACCTCGA	.	67.0	4.0	97.0	0.0	.	.	.	.	Atlas-SNP
AKR1E2	83592	hgsc.bcm.edu	hg19	10	4879675	4879675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AKR1E2	NM_001040177	exon5	c.G484T	p.G162W	ATCACCGGGCTGG	.	81.0	4.0	98.0	0.0	.	30	.	.	Atlas-SNP
ITIH2	3698	hgsc.bcm.edu	hg19	10	7751027	7751027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITIH2	NM_002216	exon4	c.T235C	p.S79P	GTCCAGTCTACTA	.	91.0	4.0	107.0	0.0	.	144	.	.	Atlas-SNP
NUDT5	11164	hgsc.bcm.edu	hg19	10	12219831	12219831	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	NUDT5,caecum,carcinoma,0,1	NUDT5	NM_014142	exon5	c.C250A	p.R84R	GTGGTCGGAACTG	.	54.0	4.0	91.0	0.0	.	10	.	.	Atlas-SNP
NUDT5	11164	hgsc.bcm.edu	hg19	10	12219892	12219892	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUDT5	NM_014142	exon5	c.G189T	p.A63A	GATGACCGCGACA	.	48.0	4.0	57.0	0.0	.	10	.	.	Atlas-SNP
FAM188A	80013	hgsc.bcm.edu	hg19	10	15821138	15821138	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM188A	NM_024948	exon15	c.C1191A	p.V397V	GTACATGACCTGT	.	69.0	4.0	112.0	0.0	.	44	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17127716	17127716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CUBN	NM_001081	exon16	c.T1990C	p.F664L	TGCAGAACTTCCC	.	87.0	4.0	152.0	0.0	.	515	.	.	Atlas-SNP
STAM	8027	hgsc.bcm.edu	hg19	10	17747603	17747603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	STAM,colon,carcinoma,0,1	STAM	NM_003473	exon12	c.T1072C	p.S358P	GAACTCTCAGAAC	.	59.0	3.0	82.0	0.0	.	60	.	.	Atlas-SNP
ARL5B	221079	hgsc.bcm.edu	hg19	10	18963040	18963040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARL5B	NM_178815	exon5	c.C467A	p.S156Y	TTCAATCCTGCTG	.	64.0	4.0	85.0	0.0	.	12	.	.	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	hg19	10	21104614	21104614	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEBL	NM_006393	exon22	c.C2181A	p.T727T	TAAAGTGGTAGCT	.	92.0	4.0	139.0	0.0	.	199	.	.	Atlas-SNP
MLLT10	8028	hgsc.bcm.edu	hg19	10	21884283	21884283	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MLLT10_ENST00000377072,colon,carcinoma,0,2	MLLT10	NM_001195626	exon4	c.C319T	p.L107L	TGTGCCCTGTATA	.	98.0	5.0	128.0	0.0	.	183	.	.	Atlas-SNP
PIP4K2A	5305	hgsc.bcm.edu	hg19	10	22880591	22880591	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PIP4K2A	NM_005028	exon4	c.C459A	p.A153A	CATTTCGGCCACG	.	120.0	6.0	125.0	0.0	.	59	.	.	Atlas-SNP
APBB1IP	54518	hgsc.bcm.edu	hg19	10	26825148	26825148	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APBB1IP	NM_019043	exon10	c.1044+2T>C	.	CTAAGGTCAGAAA	.	80.0	4.0	73.0	0.0	.	117	.	.	Atlas-SNP
ZNF248	57209	hgsc.bcm.edu	hg19	10	38126943	38126943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF248	NM_001267597	exon4	c.C112A	p.L38M	TTTCCAGGATCAC	.	96.0	4.0	148.0	0.0	.	61	.	.	Atlas-SNP
ZNF33A	7581	hgsc.bcm.edu	hg19	10	38343701	38343701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF33A	NM_006954	exon5	c.C649A	p.H217N	TTAGAGCACAATT	.	118.0	5.0	142.0	0.0	.	103	.	.	Atlas-SNP
ZNF33B	7582	hgsc.bcm.edu	hg19	10	43088543	43088543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF33B	NM_006955	exon5	c.T1855C	p.C619R	TCTGGCAGAAGGT	.	121.0	5.0	129.0	0.0	.	78	.	.	Atlas-SNP
RASGEF1A	221002	hgsc.bcm.edu	hg19	10	43698747	43698747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASGEF1A	NM_145313	exon3	c.A320G	p.K107R	CTCACCTTTTCAG	.	100.0	4.0	91.0	0.0	.	66	.	.	Atlas-SNP
TMEM72	643236	hgsc.bcm.edu	hg19	10	45429084	45429084	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM72	NM_001123376	exon4	c.210-1G>T	.	TCCCCAGGTGTCA	.	52.0	4.0	63.0	0.0	.	25	.	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	hg19	10	50532329	50532329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C10orf71	NM_001135196	exon3	c.C1739T	p.P580L	CTGACCCCAGTGA	.	86.0	4.0	133.0	0.0	.	179	.	.	Atlas-SNP
CHAT	1103	hgsc.bcm.edu	hg19	10	50833615	50833615	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CHAT,NS,carcinoma,0,1	CHAT	NM_020549	exon6	c.C849A	p.P283P	GCTCCCCGGCCAT	.	71.0	4.0	108.0	0.0	.	162	.	.	Atlas-SNP
OGDHL	55753	hgsc.bcm.edu	hg19	10	50948862	50948862	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OGDHL	NM_018245	exon16	c.T2034C	p.H678H	CTGGTCATGGAGA	.	47.0	4.0	67.0	0.0	.	149	.	.	Atlas-SNP
SGMS1	259230	hgsc.bcm.edu	hg19	10	52066912	52066912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGMS1	NM_147156	exon11	c.A1232G	p.N411S	GTGTCATTCACCA	.	149.0	6.0	223.0	0.0	.	40	.	.	Atlas-SNP
A1CF	29974	hgsc.bcm.edu	hg19	10	52619608	52619608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	A1CF	NM_138932	exon3	c.G93T	p.L31F	CTGGACCAAGCTA	.	80.0	4.0	105.0	0.0	.	190	.	.	Atlas-SNP
EGR2	1959	hgsc.bcm.edu	hg19	10	64575711	64575711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGR2	NM_000399	exon1	c.C79A	p.P27T	CCACCGGGTAGAT	.	122.0	5.0	178.0	0.0	.	77	.	.	Atlas-SNP
STOX1	219736	hgsc.bcm.edu	hg19	10	70645469	70645469	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STOX1	NM_152709	exon3	c.T1917C	p.H639H	TCCGCATAGTCTG	.	54.0	4.0	60.0	0.0	.	75	.	.	Atlas-SNP
PRF1	5551	hgsc.bcm.edu	hg19	10	72357906	72357906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRF1	NM_001083116	exon3	c.G1571T	p.R524M	AAGCACCTGGCAT	.	79.0	6.0	88.0	0.0	.	64	.	.	Atlas-SNP
PSAP	5660	hgsc.bcm.edu	hg19	10	73585601	73585601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSAP	NM_001042466	exon7	c.T770C	p.M257T	ATGTGCATCATCA	.	88.0	4.0	102.0	0.0	.	43	.	.	Atlas-SNP
SEC24C	9632	hgsc.bcm.edu	hg19	10	75526220	75526220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SEC24C	NM_198597	exon12	c.T1720C	p.S574P	GTTGTGTCTGATG	.	50.0	4.0	69.0	0.0	.	86	.	.	Atlas-SNP
CAMK2G	818	hgsc.bcm.edu	hg19	10	75602229	75602229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAMK2G	NM_172170	exon11	c.G890T	p.R297L	TTTCTCCGGGCAT	.	91.0	5.0	110.0	0.0	.	79	.	.	Atlas-SNP
PLAU	5328	hgsc.bcm.edu	hg19	10	75671984	75671984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLAU	NM_002658	exon4	c.T97C	p.C33R	TGTGACTGTCTAA	.	93.0	4.0	94.0	0.0	.	47	.	.	Atlas-SNP
MAT1A	4143	hgsc.bcm.edu	hg19	10	82039957	82039957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAT1A	NM_000429	exon5	c.C521A	p.P174H	AGCCAGGGGAGGA	.	70.0	19.0	100.0	0.0	.	52	.	.	Atlas-SNP
TSPAN14	81619	hgsc.bcm.edu	hg19	10	82275975	82275975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSPAN14	NM_030927	exon8	c.G637T	p.D213Y	AAGTGGGATGAGT	.	83.0	4.0	154.0	0.0	.	29	.	.	Atlas-SNP
IFIT2	3433	hgsc.bcm.edu	hg19	10	91066851	91066851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IFIT2	NM_001547	exon2	c.T1138C	p.F380L	GGCAACTTTCAGC	.	91.0	4.0	96.0	0.0	.	39	.	.	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94291601	94291601	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IDE	NM_004969	exon4	c.G565T	p.E189X	CATGTTCTGAATC	.	76.0	5.0	114.0	0.0	.	77	.	.	Atlas-SNP
HPS1	3257	hgsc.bcm.edu	hg19	10	100182230	100182230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HPS1	NM_000195	exon17	c.G1639A	p.V547M	GGTCCACATAGAT	.	89.0	4.0	87.0	0.0	.	65	.	.	Atlas-SNP
ABCC2	1244	hgsc.bcm.edu	hg19	10	101567952	101567952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC2	NM_000392	exon13	c.G1781A	p.S594N	CCCTGAGCATGCT	.	115.0	39.0	160.0	0.0	.	160	.	.	Atlas-SNP
CPN1	1369	hgsc.bcm.edu	hg19	10	101824984	101824984	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPN1	NM_001308	exon4	c.C720A	p.T240T	GCTGGCGGTGCGG	.	87.0	4.0	96.0	0.0	.	62	.	.	Atlas-SNP
CHUK	1147	hgsc.bcm.edu	hg19	10	101964400	101964400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHUK	NM_001278	exon13	c.G1370T	p.R457I	TTATATCTAAGAA	.	115.0	5.0	104.0	0.0	.	71	.	.	Atlas-SNP
CHUK	1147	hgsc.bcm.edu	hg19	10	101982628	101982628	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CHUK,NS,carcinoma,0,1	CHUK	NM_001278	exon3	c.C310A	p.R104R	CCTTTCGGAGATC	.	98.0	4.0	86.0	1.0	.	71	.	.	Atlas-SNP
OBFC1	79991	hgsc.bcm.edu	hg19	10	105652001	105652001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OBFC1	NM_024928	exon8	c.A763G	p.K255E	CCTTCTTAAAATT	.	93.0	4.0	77.0	0.0	.	33	.	.	Atlas-SNP
VWA2	340706	hgsc.bcm.edu	hg19	10	116045927	116045927	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VWA2	NM_001272046	exon11	c.C1227T	p.S409S	CTGGAGCCTCGAT	.	85.0	4.0	159.0	0.0	.	64	.	.	Atlas-SNP
BTBD16	118663	hgsc.bcm.edu	hg19	10	124096039	124096039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BTBD16	NM_144587	exon15	c.T1294C	p.S432P	TCTCCCTCTGCGG	.	93.0	4.0	121.0	0.0	.	44	.	.	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	hg19	10	124380739	124380739	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	DMBT1_ENST00000368915,NS,carcinoma,0,3	DMBT1	NM_007329	exon41	c.G5064T	p.S1688S	CATGTCGGCCCCA	.	49.0	3.0	102.0	1.0	.	677	.	.	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134694527	134694527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTC40	NM_001200049	exon28	c.A3637G	p.M1213V	ACTCCATCTCAGG	.	51.0	5.0	91.0	0.0	.	100	.	.	Atlas-SNP
GPR123	84435	hgsc.bcm.edu	hg19	10	134910585	134910585	+	Silent	SNP	C	C	T	rs62624493	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR123	NM_001083909	exon3	c.C111T	p.V37V	CTTCGTCACCTAC	.	36.0	8.0	35.0	0.0	.	118	.	C|0.993;G|0.007	Atlas-SNP
ADAM8	101	hgsc.bcm.edu	hg19	10	135087474	135087474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAM8	NM_001164489	exon4	c.C287T	p.T96M	TGCTCCGTCACCT	.	62.0	17.0	101.0	0.0	.	41	.	.	Atlas-SNP
ECHS1	1892	hgsc.bcm.edu	hg19	10	135182430	135182430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ECHS1	NM_004092	exon4	c.C511A	p.P171T	TACCTGGGATGGT	.	109.0	6.0	135.0	0.0	.	31	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	607103	607103	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHRF1	NM_020901	exon14	c.C1644A	p.S548S	TCTGTCCAGAGGG	.	85.0	4.0	93.0	0.0	.	188	.	.	Atlas-SNP
OSBPL5	114879	hgsc.bcm.edu	hg19	11	3143580	3143580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OSBPL5	NM_145638	exon4	c.A298G	p.K100E	TCACCTTGAGAGT	.	80.0	4.0	107.0	0.0	.	78	.	.	Atlas-SNP
OR52A1	23538	hgsc.bcm.edu	hg19	11	5173434	5173434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR52A1	NM_012375	exon1	c.A166G	p.S56G	GGAGACTGCGCTC	.	112.0	5.0	132.0	0.0	.	58	.	.	Atlas-SNP
RRP8	23378	hgsc.bcm.edu	hg19	11	6622399	6622399	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	RRP8,NS,adenocarcinoma,0,1	RRP8	NM_015324	exon3	c.C897A	p.I299I	CCTGGCGATGCGG	.	41.0	2.0	54.0	1.0	.	40	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6653382	6653382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DCHS1	NM_003737	exon6	c.G3361A	p.G1121R	TGGTCCCTGGGGG	.	112.0	5.0	128.0	0.0	.	277	.	.	Atlas-SNP
NLRP14	338323	hgsc.bcm.edu	hg19	11	7091661	7091661	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NLRP14	NM_176822	exon11	c.T3120C	p.S1040S	GAAGTCTCCTAAG	.	96.0	4.0	139.0	0.0	.	187	.	.	Atlas-SNP
OR10A3	26496	hgsc.bcm.edu	hg19	11	7960614	7960614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR10A3	NM_001003745	exon1	c.G454T	p.G152W	TGATCCCTGAGAT	.	129.0	6.0	117.0	0.0	.	54	.	.	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	hg19	11	8642090	8642090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRIM66	NM_014818	exon16	c.G3047A	p.S1016N	GTCAGGCTGCGGC	.	132.0	34.0	167.0	0.0	.	45	.	.	Atlas-SNP
DKK3	27122	hgsc.bcm.edu	hg19	11	11988502	11988502	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DKK3	NM_001018057	exon5	c.A672G	p.R224R	CTCACCTCTCTGG	.	129.0	6.0	232.0	0.0	.	35	.	.	Atlas-SNP
TEAD1	7003	hgsc.bcm.edu	hg19	11	12904610	12904610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEAD1	NM_021961	exon9	c.A637G	p.T213A	ATTGGCACAACCA	.	97.0	4.0	137.0	0.0	.	40	.	.	Atlas-SNP
ARNTL	406	hgsc.bcm.edu	hg19	11	13408153	13408153	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARNTL	NM_001030272	exon19	c.C1728A	p.P576P	GAACCCCCACATA	.	72.0	4.0	103.0	0.0	.	46	.	.	Atlas-SNP
C11orf58	10944	hgsc.bcm.edu	hg19	11	16774369	16774369	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	C11orf58,bladder,carcinoma,+1,1	C11orf58	NM_014267	exon4	c.T246C	p.S82S	GGAGTCTCAATAT	.	98.0	5.0	145.0	0.0	.	14	.	.	Atlas-SNP
SAA2-SAA4	100528017	hgsc.bcm.edu	hg19	11	18253136	18253136	+	Silent	SNP	C	C	A	rs201938371	by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SAA4,colon,carcinoma,0,1	.	NM_001199744	exon6	c.G540T	p.S180S	GGACTTCGAGTCC	.	111.0	28.0	169.0	0.0	.	.	.	C|1.000;T|0.000	Atlas-SNP
IGSF22	283284	hgsc.bcm.edu	hg19	11	18732375	18732375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGSF22	NM_173588	exon16	c.A2399G	p.E800G	GGAGGCTCTGTGG	.	132.0	6.0	137.0	0.0	.	211	.	.	Atlas-SNP
LUZP2	338645	hgsc.bcm.edu	hg19	11	24759781	24759781	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	LUZP2,colon,carcinoma,0,1	LUZP2	NM_001252010	exon4	c.C266G	p.S89C	TGAAGTCTCTTCA	.	183.0	55.0	251.0	1.0	.	90	.	.	Atlas-SNP
WT1	7490	hgsc.bcm.edu	hg19	11	32452076	32452076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WT1	NM_001198551	exon1	c.G10A	p.G4S	ACGAACCCTTCTC	.	63.0	4.0	104.0	0.0	.	744	.	.	Atlas-SNP
LDLRAD3	143458	hgsc.bcm.edu	hg19	11	36250861	36250861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LDLRAD3	NM_174902	exon6	c.A952G	p.S318G	GACACCAGCCACA	.	90.0	4.0	127.0	0.0	.	52	.	.	Atlas-SNP
ACCS	84680	hgsc.bcm.edu	hg19	11	44089232	44089232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ACCS,rectum,carcinoma,0,1	ACCS	NM_032592	exon2	c.A55G	p.T19A	GGCCCCACCTGCA	.	112.0	5.0	127.0	0.0	.	64	.	.	Atlas-SNP
C11orf94	143678	hgsc.bcm.edu	hg19	11	45928125	45928125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf94	NM_001080446	exon3	c.C292A	p.L98I	GTCATAGGTGTGC	.	82.0	4.0	87.0	0.0	.	13	.	.	Atlas-SNP
LRP4	4038	hgsc.bcm.edu	hg19	11	46896443	46896443	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP4	NM_002334	exon28	c.C4137A	p.V1379V	AACAGGGACATGC	.	114.0	31.0	134.0	0.0	.	160	.	.	Atlas-SNP
PACSIN3	29763	hgsc.bcm.edu	hg19	11	47199984	47199984	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PACSIN3	NM_016223	exon10	c.C1092A	p.T364T	AACCCCGGTGGCA	.	87.0	4.0	155.0	0.0	.	28	.	.	Atlas-SNP
MADD	8567	hgsc.bcm.edu	hg19	11	47307982	47307982	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MADD	NM_130470	exon15	c.2552-2A>G	.	CTTGATAGGCAGC	.	69.0	4.0	102.0	0.0	.	172	.	.	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57069548	57069548	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNKS1BP1	NM_033396	exon8	c.G4834T	p.E1612X	CCCTACCTGTAGA	.	82.0	4.0	94.0	0.0	.	148	.	.	Atlas-SNP
P2RX3	5024	hgsc.bcm.edu	hg19	11	57115686	57115686	+	Missense_Mutation	SNP	G	G	T	rs115850675	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P2RX3	NM_002559	exon5	c.G434T	p.R145L	TGCTCCGGACCTG	.	68.0	5.0	57.0	0.0	.	55	.	G|0.996;A|0.004	Atlas-SNP
MS4A13	503497	hgsc.bcm.edu	hg19	11	60292725	60292725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MS4A13	NM_001012417	exon5	c.A232T	p.I78F	ACTACAATTACTG	.	373.0	126.0	409.0	0.0	.	27	.	.	Atlas-SNP
PRPF19	27339	hgsc.bcm.edu	hg19	11	60666657	60666657	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRPF19	NM_014502	exon11	c.C948A	p.A316A	GCCAGTGGCATGA	.	77.0	4.0	110.0	0.0	.	62	.	.	Atlas-SNP
TUT1	64852	hgsc.bcm.edu	hg19	11	62346379	62346379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TUT1	NM_022830	exon5	c.G928T	p.D310Y	CAGAATCCTGGGG	.	91.0	4.0	140.0	0.0	.	122	.	.	Atlas-SNP
HNRNPUL2	221092	hgsc.bcm.edu	hg19	11	62488867	62488867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HNRNPUL2	NM_001079559	exon9	c.A1511G	p.D504G	TTGGGGTCCATCT	.	90.0	4.0	132.0	0.0	.	41	.	.	Atlas-SNP
FLRT1	23769	hgsc.bcm.edu	hg19	11	63884020	63884020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FLRT1	NM_013280	exon2	c.A281G	p.N94S	AGATCAACAACGC	.	61.0	5.0	65.0	0.0	.	46	.	.	Atlas-SNP
STIP1	10963	hgsc.bcm.edu	hg19	11	63962047	63962047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STIP1	NM_006819	exon4	c.G458T	p.R153L	CCTACCGGGAGCT	.	93.0	5.0	134.0	0.0	.	63	.	.	Atlas-SNP
CDC42BPG	55561	hgsc.bcm.edu	hg19	11	64599915	64599915	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDC42BPG	NM_017525	exon27	c.G3072A	p.L1024L	GCGTGGCAGGTCC	.	75.0	4.0	119.0	0.0	.	101	.	.	Atlas-SNP
MAP3K11	4296	hgsc.bcm.edu	hg19	11	65373551	65373551	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP3K11	NM_002419	exon7	c.G1605A	p.L535L	AGGCTCCACTGCA	.	58.0	4.0	48.0	0.0	.	67	.	.	Atlas-SNP
KLC2	64837	hgsc.bcm.edu	hg19	11	66031564	66031564	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLC2	NM_022822	exon8	c.G990T	p.L330L	CAACCTGGCCCTG	.	142.0	18.0	118.0	0.0	.	50	.	.	Atlas-SNP
BBS1	582	hgsc.bcm.edu	hg19	11	66283057	66283057	+	Missense_Mutation	SNP	G	G	T	rs376894444	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BBS1	NM_024649	exon5	c.G479T	p.R160L	GCATCCGGTGAGA	.	195.0	8.0	132.0	0.0	.	58	.	.	Atlas-SNP
RBM14	10432	hgsc.bcm.edu	hg19	11	66392658	66392658	+	Silent	SNP	C	C	A	rs375934305	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBM14	NM_006328	exon2	c.C1311A	p.A437A	GCCAGCCACAGCT	.	75.0	4.0	40.0	0.0	.	59	.	.	Atlas-SNP
RBM14	10432	hgsc.bcm.edu	hg19	11	66392968	66392968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBM14	NM_006328	exon2	c.C1621A	p.R541S	TCCTACCGCGGCC	.	126.0	6.0	88.0	0.0	.	59	.	.	Atlas-SNP
KDM2A	22992	hgsc.bcm.edu	hg19	11	67017960	67017960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDM2A	NM_012308	exon17	c.A2459G	p.Q820R	AGCTGCAGGCCAT	.	85.0	4.0	107.0	0.0	.	80	.	.	Atlas-SNP
ACY3	91703	hgsc.bcm.edu	hg19	11	67410349	67410349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACY3	NM_080658	exon8	c.A806G	p.D269G	AGCAGGTCCTCCC	.	91.0	4.0	73.0	0.0	.	27	.	.	Atlas-SNP
TCIRG1	10312	hgsc.bcm.edu	hg19	11	67818045	67818045	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCIRG1	NM_006019	exon19	c.C2328A	p.I776I	CCCCATCTTTGCC	.	386.0	167.0	433.0	1.0	.	40	.	.	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	hg19	11	70332784	70332784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHANK2	NM_133266	exon10	c.T1850C	p.L617P	CCTGTGAGTGGGT	.	101.0	5.0	87.0	0.0	.	340	.	.	Atlas-SNP
P2RY2	5029	hgsc.bcm.edu	hg19	11	72946264	72946264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P2RY2	NM_176071	exon3	c.G1060T	p.G354C	GTGTTGGGCAGCA	.	94.0	4.0	127.0	0.0	.	54	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73796884	73796884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C2CD3	NM_015531	exon21	c.G3689T	p.G1230V	TTGACCCCGACTG	.	116.0	5.0	178.0	0.0	.	288	.	.	Atlas-SNP
LIPT2	387787	hgsc.bcm.edu	hg19	11	74203187	74203187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LIPT2	NM_001144869	exon2	c.C689A	p.P230H	CAGTTGGGGCTGT	.	95.0	4.0	117.0	0.0	.	5	.	.	Atlas-SNP
PICALM	8301	hgsc.bcm.edu	hg19	11	85701369	85701369	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PICALM	NM_007166	exon13	c.T1332C	p.S444S	ATCACCACTACTT	.	100.0	4.0	131.0	0.0	.	82	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92616016	92616016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAT3	NM_001008781	exon23	c.T12394C	p.Y4132H	GGCCAGTACTGCG	.	76.0	22.0	130.0	0.0	.	1822	.	.	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93844139	93844139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HEPHL1	NM_001098672	exon18	c.C3116T	p.A1039V	TGTTTGCAGATCA	.	91.0	4.0	112.0	0.0	.	144	.	.	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	100141826	100141826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNTN5	NM_001243270	exon17	c.C2167T	p.P723S	ATAGTCCCAGAAA	.	70.0	4.0	89.0	0.0	.	324	.	.	Atlas-SNP
BIRC2	329	hgsc.bcm.edu	hg19	11	102221307	102221307	+	Missense_Mutation	SNP	G	G	T	rs144530384	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BIRC2	NM_001256163	exon2	c.G722T	p.R241L	AACACCGGAGGCA	.	83.0	4.0	82.0	0.0	.	51	.	G|1.000;A|0.000	Atlas-SNP
TMEM123	114908	hgsc.bcm.edu	hg19	11	102272281	102272281	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM123	NM_052932	exon4	c.G591A	p.R197R	TCGATACCGAATG	.	90.0	5.0	108.0	0.0	.	16	.	.	Atlas-SNP
KBTBD3	143879	hgsc.bcm.edu	hg19	11	105924774	105924774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KBTBD3	NM_152433	exon3	c.G642A	p.M214I	CAGTACCATTTCT	.	92.0	4.0	88.0	0.0	.	59	.	.	Atlas-SNP
CWF19L2	143884	hgsc.bcm.edu	hg19	11	107263571	107263571	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CWF19L2	NM_152434	exon11	c.A1668G	p.R556R	CCATACTCTTCCA	.	86.0	4.0	108.0	0.0	.	135	.	.	Atlas-SNP
C11orf88	399949	hgsc.bcm.edu	hg19	11	111385715	111385715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C11orf88	NM_001100388	exon1	c.C206A	p.P69H	CGCGGCCCAGGAG	.	65.0	5.0	74.0	0.0	.	37	.	.	Atlas-SNP
PTS	5805	hgsc.bcm.edu	hg19	11	112104184	112104184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTS	NM_000317	exon6	c.G344T	p.W115L	ATATCTGGGACAA	.	93.0	5.0	114.0	0.0	.	7	.	.	Atlas-SNP
USP28	57646	hgsc.bcm.edu	hg19	11	113694377	113694377	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP28	NM_020886	exon12	c.T1233C	p.C411C	TCGAATACACTCT	.	89.0	4.0	92.0	0.0	.	135	.	.	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	hg19	11	115109361	115109361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CADM1	NM_014333	exon3	c.A283G	p.S95G	ACCTGCTGTCCTT	.	86.0	4.0	129.0	0.0	.	74	.	.	Atlas-SNP
SIK3	23387	hgsc.bcm.edu	hg19	11	116746722	116746722	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SIK3	NM_025164	exon9	c.T925C	p.L309L	ATCTTAATGACTA	.	76.0	4.0	101.0	0.0	.	112	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117374691	117374691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	DSCAML1,NS,carcinoma,0,1	DSCAML1	NM_020693	exon11	c.G2408A	p.R803H	TGGATGCGGCCAG	.	134.0	40.0	194.0	0.0	.	286	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117392100	117392100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DSCAML1	NM_020693	exon6	c.A1138T	p.T380S	TTGGTGTCAGGGT	.	80.0	4.0	109.0	0.0	.	286	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	hg19	11	117780678	117780678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMPRSS13	NM_001206790	exon8	c.G952T	p.G318X	TCAGTCCGCAGTC	.	73.0	5.0	97.0	0.0	.	75	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118377325	118377325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLL	NM_001197104	exon27	c.C10718T	p.P3573L	ACATTCCAGACCA	.	51.0	4.0	104.0	0.0	.	548	.	.	Atlas-SNP
HSPA8	3312	hgsc.bcm.edu	hg19	11	122930222	122930222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSPA8	NM_006597	exon5	c.A1079G	p.N360S	CTCTTATTCAGTT	.	122.0	12.0	146.0	0.0	.	168	.	.	Atlas-SNP
OR10G8	219869	hgsc.bcm.edu	hg19	11	123901212	123901212	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR10G8	NM_001004464	exon1	c.A883T	p.K295X	GAGGTGAAGAAAG	.	201.0	63.0	284.0	0.0	.	132	.	.	Atlas-SNP
OR8G5	219865	hgsc.bcm.edu	hg19	11	124134976	124134976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001005198	exon1	c.G254A	p.G85E	TGATTGGGCTCAG	.	123.0	34.0	137.0	0.0	.	.	.	.	Atlas-SNP
OR8B8	26493	hgsc.bcm.edu	hg19	11	124310838	124310838	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR8B8	NM_012378	exon1	c.G144A	p.L48L	CCTTATCAGGGTT	.	84.0	4.0	148.0	0.0	.	76	.	.	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	hg19	12	988759	988759	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	WNK1,colon,carcinoma,0,1	WNK1	NM_018979	exon11	c.A2394G	p.V798V	GCCAGTACCAACT	.	98.0	4.0	103.0	0.0	.	403	.	.	Atlas-SNP
KCNA5	3741	hgsc.bcm.edu	hg19	12	5153812	5153812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNA5	NM_002234	exon1	c.C499T	p.R167C	TTCGACCGCAACC	.	63.0	26.0	98.0	0.0	.	138	.	.	Atlas-SNP
PIANP	196500	hgsc.bcm.edu	hg19	12	6804636	6804636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001244014	exon5	c.A787G	p.M263V	GGGGCATCCCAGG	.	84.0	4.0	135.0	0.0	.	.	.	.	Atlas-SNP
COPS7A	50813	hgsc.bcm.edu	hg19	12	6833778	6833778	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COPS7A	.	.	.	.	CCTTGCAGCTCTG	.	41.0	4.0	49.0	0.0	.	26	.	.	Atlas-SNP
USP5	8078	hgsc.bcm.edu	hg19	12	6968664	6968664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP5	NM_003481	exon9	c.G1089T	p.Q363H	CTTCCAGAATGCC	.	84.0	4.0	106.0	0.0	.	124	.	.	Atlas-SNP
AICDA	57379	hgsc.bcm.edu	hg19	12	8759503	8759503	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AICDA	NM_020661	exon2	c.T114C	p.S38S	TGTAGCACTGTCA	.	57.0	4.0	71.0	0.0	.	37	.	.	Atlas-SNP
PHC1	1911	hgsc.bcm.edu	hg19	12	9086863	9086863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHC1	NM_004426	exon10	c.A2042G	p.E681G	TTCCAGAAAAAGC	.	84.0	4.0	58.0	0.0	.	67	.	.	Atlas-SNP
TAS2R43	259289	hgsc.bcm.edu	hg19	12	11244577	11244577	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAS2R43	NM_176884	exon1	c.T252C	p.A84A	ATTATAAGCAGTA	.	107.0	6.0	152.0	0.0	.	19	.	.	Atlas-SNP
GSG1	83445	hgsc.bcm.edu	hg19	12	13238130	13238130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GSG1	NM_001080555	exon7	c.C794T	p.T265I	TTGAAGGTGGTGA	.	99.0	4.0	172.0	0.0	.	62	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19489449	19489449	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHA5	NM_001256470	exon21	c.G2449T	p.E817X	TTTTAGGAATTGG	.	87.0	4.0	72.0	0.0	.	198	.	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	hg19	12	20769196	20769196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PDE3A,lower_third,carcinoma,0,1	PDE3A	NM_000921	exon4	c.G1302T	p.L434F	CTTGTTGAGACGA	.	39.0	3.0	49.0	0.0	.	184	.	.	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	hg19	12	21962812	21962812	+	Missense_Mutation	SNP	A	A	G	rs144125604		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC9	NM_005691	exon35	c.T4289C	p.M1430T	TTGACCATATTCT	.	45.0	4.0	60.0	0.0	.	411	.	A|1.000;G|0.000	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26732975	26732975	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ITPR2	NM_002223	exon33	c.T4494A	p.N1498K	GGTACTATTGTCT	.	124.0	5.0	99.0	0.0	.	270	.	.	Atlas-SNP
STK38L	23012	hgsc.bcm.edu	hg19	12	27475143	27475143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STK38L	NM_015000	exon13	c.C1243T	p.P415S	GACTTCCCTGAAT	.	58.0	5.0	75.0	0.0	.	44	.	.	Atlas-SNP
SLC2A13	114134	hgsc.bcm.edu	hg19	12	40158289	40158289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC2A13	NM_052885	exon9	c.C1693T	p.H565Y	CTGTGTGTAAAAA	.	89.0	4.0	158.0	0.0	.	91	.	.	Atlas-SNP
ANO6	196527	hgsc.bcm.edu	hg19	12	45742051	45742051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANO6	NM_001204803	exon6	c.A649T	p.I217L	TTTTACATAGTTG	.	213.0	16.0	275.0	0.0	.	163	.	.	Atlas-SNP
SENP1	29843	hgsc.bcm.edu	hg19	12	48491823	48491823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP1	NM_001267594	exon3	c.C89T	p.P30L	GTTTGTGGCAGGA	.	73.0	4.0	106.0	0.0	.	44	.	.	Atlas-SNP
SENP1	29843	hgsc.bcm.edu	hg19	12	48491866	48491866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP1	NM_001267594	exon3	c.A46G	p.T16A	CTAAAGTCACTTC	.	81.0	4.0	117.0	0.0	.	44	.	.	Atlas-SNP
CACNB3	784	hgsc.bcm.edu	hg19	12	49221409	49221409	+	Silent	SNP	C	C	T	rs191174951	by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNB3	NM_000725	exon13	c.C1182T	p.P394P	CTCCCCCCTTGAG	.	51.0	4.0	91.0	0.0	.	51	.	C|1.000;A|0.000	Atlas-SNP
SPATS2	65244	hgsc.bcm.edu	hg19	12	49854820	49854820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATS2	NM_023071	exon3	c.G25T	p.D9Y	CAGAAGGGTAAGA	.	211.0	9.0	272.0	0.0	.	43	.	.	Atlas-SNP
LARP4	113251	hgsc.bcm.edu	hg19	12	50822725	50822725	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LARP4	NM_001170808	exon3	c.A174G	p.A58A	TAATGCAGAGCTC	.	86.0	4.0	85.0	0.0	.	58	.	.	Atlas-SNP
KRT75	9119	hgsc.bcm.edu	hg19	12	52826983	52826983	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT75	NM_004693	exon2	c.G552T	p.L184L	CTCCTGCAGGAGG	.	69.0	4.0	100.0	0.0	.	75	.	.	Atlas-SNP
KRT79	338785	hgsc.bcm.edu	hg19	12	53217754	53217754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT79	NM_175834	exon6	c.C1063A	p.L355M	CCCGCAGGTTGTC	.	87.0	4.0	140.0	0.0	.	78	.	.	Atlas-SNP
AAAS	8086	hgsc.bcm.edu	hg19	12	53701649	53701649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AAAS	NM_015665	exon15	c.A1396G	p.K466E	CCCCTTTGTTGAA	.	100.0	4.0	101.0	0.0	.	46	.	.	Atlas-SNP
NFE2	4778	hgsc.bcm.edu	hg19	12	54686181	54686181	+	Missense_Mutation	SNP	T	T	C	rs373651500	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NFE2	NM_001261461	exon4	c.A1099G	p.T367A	TCTTGGTCCCCCG	.	121.0	5.0	130.0	0.0	.	28	.	.	Atlas-SNP
GPR84	53831	hgsc.bcm.edu	hg19	12	54757304	54757304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR84	NM_020370	exon2	c.T332C	p.L111P	AGGCAGAGGGTCA	.	98.0	4.0	96.0	0.0	.	38	.	.	Atlas-SNP
OR6C4	341418	hgsc.bcm.edu	hg19	12	55945361	55945361	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR6C4	NM_001005494	exon1	c.T351C	p.S117S	CATGTCTTATGAT	.	120.0	6.0	137.0	0.0	.	34	.	.	Atlas-SNP
DNAJC14	85406	hgsc.bcm.edu	hg19	12	56221087	56221087	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAJC14	NM_032364	exon2	c.C1356A	p.A452A	TGCTGTGGCCTCA	.	83.0	4.0	111.0	0.0	.	52	.	.	Atlas-SNP
MMP19	4327	hgsc.bcm.edu	hg19	12	56234506	56234506	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MMP19	NM_001272101	exon4	c.C465A	p.R155R	GGAGAGGCGGATG	.	89.0	4.0	98.0	0.0	.	61	.	.	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	hg19	12	56487950	56487950	+	Missense_Mutation	SNP	G	G	T	rs202048840	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERBB3	NM_001982	exon14	c.G1681T	p.G561C	ATGGAGGGCACTG	.	52.0	4.0	68.0	0.0	.	350	.	G|0.999;A|0.001	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57573622	57573622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1	NM_002332	exon30	c.C5024G	p.T1675R	TCTGGACAAGCTA	.	72.0	16.0	89.0	0.0	.	428	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57592334	57592334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRP1	NM_002332	exon60	c.C9557A	p.T3186N	TGGACACCAAGAT	.	84.0	4.0	65.0	0.0	.	428	.	.	Atlas-SNP
SHMT2	6472	hgsc.bcm.edu	hg19	12	57627867	57627867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHMT2	NM_005412	exon11	c.T1361C	p.I454T	TCAACATTGGCTT	.	94.0	5.0	98.0	0.0	.	40	.	.	Atlas-SNP
HELB	92797	hgsc.bcm.edu	hg19	12	66698763	66698763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HELB	NM_033647	exon2	c.G440T	p.W147L	TAACATGGGTAAA	.	100.0	5.0	164.0	0.0	.	90	.	.	Atlas-SNP
HELB	92797	hgsc.bcm.edu	hg19	12	66725244	66725244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HELB	NM_033647	exon12	c.T2981C	p.M994T	ACGCCATGACAAA	.	85.0	4.0	81.0	0.0	.	90	.	.	Atlas-SNP
HELB	92797	hgsc.bcm.edu	hg19	12	66731843	66731843	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HELB	NM_033647	exon13	c.C3225A	p.P1075P	AATTCCCAGGCAA	.	98.0	4.0	140.0	0.0	.	90	.	.	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	hg19	12	71976289	71976289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LGR5	NM_003667	exon17	c.C1606A	p.L536I	AAAGCCCTTCATT	.	114.0	5.0	161.0	0.0	.	103	.	.	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	hg19	12	72057219	72057219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZFC3H1,NS,carcinoma,0,1	ZFC3H1	NM_144982	exon1	c.C172A	p.P58T	AGTGAGGAGGCCT	.	43.0	2.0	70.0	0.0	.	172	.	.	Atlas-SNP
TPH2	121278	hgsc.bcm.edu	hg19	12	72416258	72416258	+	Missense_Mutation	SNP	C	C	A	rs371065822	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TPH2	NM_173353	exon9	c.C1148A	p.S383Y	TTTCCTCCATTGG	.	74.0	4.0	111.0	0.0	.	81	.	.	Atlas-SNP
CAPS2	84698	hgsc.bcm.edu	hg19	12	75683540	75683540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAPS2	NM_032606	exon15	c.A1313G	p.K438R	TGTAGTTTTTCTT	.	98.0	4.0	107.0	0.0	.	96	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78513068	78513068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NAV3	NM_014903	exon15	c.G3092T	p.G1031V	TAAAAGGATCATC	.	83.0	4.0	98.0	0.0	.	506	.	.	Atlas-SNP
PAWR	5074	hgsc.bcm.edu	hg19	12	80007382	80007382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAWR	NM_002583	exon4	c.C656A	p.P219H	GTTCTAGGTGGCT	.	98.0	6.0	137.0	0.0	.	14	.	.	Atlas-SNP
TMTC2	160335	hgsc.bcm.edu	hg19	12	83526015	83526015	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMTC2	NM_152588	exon12	c.A2358G	p.G786G	CCTGGGAGCCATT	.	124.0	5.0	139.0	0.0	.	100	.	.	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	hg19	12	90015326	90015326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP2B1	NM_001001323	exon9	c.G1587T	p.L529F	CCTTACCAATATT	.	81.0	4.0	115.0	0.0	.	191	.	.	Atlas-SNP
APAF1	317	hgsc.bcm.edu	hg19	12	99056270	99056270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	APAF1	NM_181868	exon6	c.G747T	p.W249C	CTCTTGGGTGTTG	.	122.0	5.0	173.0	0.0	.	111	.	.	Atlas-SNP
MYBPC1	4604	hgsc.bcm.edu	hg19	12	102067212	102067212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYBPC1	NM_206819	exon25	c.C2621T	p.P874L	GAAAACCAAGACC	.	92.0	4.0	113.0	0.0	.	235	.	.	Atlas-SNP
KIAA1033	23325	hgsc.bcm.edu	hg19	12	105534742	105534742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA1033	NM_015275	exon17	c.G1626T	p.L542F	AGTTTTGGCTGAA	.	103.0	5.0	162.0	0.0	.	83	.	.	Atlas-SNP
TCP11L2	255394	hgsc.bcm.edu	hg19	12	106740234	106740234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCP11L2	NM_152772	exon10	c.G1486T	p.A496S	TTTTATGCAAATA	.	69.0	4.0	109.0	0.0	.	59	.	.	Atlas-SNP
RIC8B	55188	hgsc.bcm.edu	hg19	12	107209055	107209055	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	RIC8B_ENST00000355478,NS,carcinoma,0,2	RIC8B	NM_018157	exon3	c.G714T	p.T238T	TGTGACGGTAGAC	.	45.0	3.0	90.0	0.0	.	51	.	.	Atlas-SNP
DAO	1610	hgsc.bcm.edu	hg19	12	109278816	109278816	+	Missense_Mutation	SNP	G	G	T	rs373913310		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	DAO,caecum,carcinoma,0,2	DAO	NM_001917	exon2	c.G34T	p.G12W	GTCATCGGGCTGT	.	86.0	4.0	54.0	0.0	.	58	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109660331	109660331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACACB	NM_001093	exon24	c.A3584G	p.D1195G	GCCCAGACCCTTC	.	88.0	4.0	132.0	0.0	.	330	.	.	Atlas-SNP
TCHP	84260	hgsc.bcm.edu	hg19	12	110340853	110340853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCHP	NM_001143852	exon2	c.T22C	p.S8P	CTGCCGTCCTACT	.	87.0	4.0	149.0	0.0	.	45	.	.	Atlas-SNP
OAS1	4938	hgsc.bcm.edu	hg19	12	113357204	113357204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OAS1	NM_016816	exon6	c.A1049G	p.N350S	AAAGCAACAGTGC	.	92.0	5.0	93.0	0.0	.	128	.	.	Atlas-SNP
LHX5	64211	hgsc.bcm.edu	hg19	12	113901182	113901182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LHX5	NM_022363	exon5	c.T1022C	p.F341S	TCGGTGAACCTGG	.	88.0	6.0	118.0	0.0	.	39	.	.	Atlas-SNP
CIT	11113	hgsc.bcm.edu	hg19	12	120151337	120151337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CIT	NM_001206999	exon34	c.C4423A	p.P1475T	GACCTGGGGAGTT	.	119.0	5.0	149.0	0.0	.	535	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120572406	120572406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GCN1L1	NM_006836	exon52	c.A7133G	p.H2378R	TTAATGTGGATGG	.	95.0	5.0	145.0	0.0	.	207	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120600885	120600885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GCN1L1	NM_006836	exon19	c.A2027G	p.H676R	GATGGGTGGTGGG	.	92.0	4.0	108.0	0.0	.	207	.	.	Atlas-SNP
MSI1	4440	hgsc.bcm.edu	hg19	12	120795696	120795696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MSI1,NS,carcinoma,0,1	MSI1	NM_002442	exon8	c.G457T	p.G153W	CAAACCCGAACCC	.	85.0	5.0	140.0	1.0	.	40	.	.	Atlas-SNP
P2RX4	5025	hgsc.bcm.edu	hg19	12	121648016	121648016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P2RX4	NM_001261398	exon1	c.A49G	p.T17A	TACGACACGCCGC	.	93.0	4.0	72.0	0.0	.	27	.	.	Atlas-SNP
CAMKK2	10645	hgsc.bcm.edu	hg19	12	121701741	121701741	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CAMKK2	NM_153500	exon6	c.T627C	p.R209R	AGGGCGACCTGAA	.	76.0	4.0	62.0	0.0	.	87	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122257551	122257551	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD1B	NM_015048	exon11	c.G3531T	p.P1177P	GGCCCCGGGGGCA	.	79.0	4.0	106.0	0.0	.	105	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122261465	122261465	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD1B	NM_015048	exon12	c.C4851A	p.P1617P	CTCGCCCGAACTC	.	81.0	4.0	68.0	0.0	.	105	.	.	Atlas-SNP
LRRC43	254050	hgsc.bcm.edu	hg19	12	122669301	122669301	+	Missense_Mutation	SNP	G	G	T	rs372181783		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LRRC43	NM_001098519	exon2	c.G386T	p.R129L	ACTTCCGGTCCCT	.	144.0	6.0	192.0	0.0	.	105	.	.	Atlas-SNP
SFSWAP	6433	hgsc.bcm.edu	hg19	12	132283969	132283969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SFSWAP	NM_001261411	exon19	c.A2948G	p.D983G	CACAGGATCTCAT	.	81.0	4.0	140.0	0.0	.	69	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132549272	132549272	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EP400	NM_015409	exon48	c.A8394G	p.P2798P	ACCGCCACAGGCC	.	73.0	4.0	100.0	0.0	.	370	.	.	Atlas-SNP
ZNF10	7556	hgsc.bcm.edu	hg19	12	133732852	133732852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF10	NM_015394	exon5	c.G1020T	p.Q340H	TCATCAGAGAACT	.	75.0	4.0	100.0	0.0	.	58	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23908202	23908202	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SACS	NM_014363	exon10	c.T9813C	p.V3271V	ATCAACAACAATG	.	84.0	4.0	98.0	0.0	.	871	.	.	Atlas-SNP
SLC46A3	283537	hgsc.bcm.edu	hg19	13	29286871	29286871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC46A3	NM_181785	exon3	c.A1006G	p.M336V	CTGTCATCGTGGT	.	112.0	5.0	154.0	0.0	.	86	.	.	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	hg19	13	33681005	33681005	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STARD13	NM_178006	exon13	c.A3114G	p.E1038E	CTGGGCTTCCTCA	.	97.0	4.0	132.0	0.0	.	100	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36239245	36239245	+	Missense_Mutation	SNP	G	G	A	rs368581341		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NBEA	NM_015678	exon55	c.G8323A	p.V2775I	AGAGCCGTCCTCA	.	177.0	53.0	282.0	0.0	.	340	.	.	Atlas-SNP
KBTBD7	84078	hgsc.bcm.edu	hg19	13	41768100	41768100	+	Missense_Mutation	SNP	G	G	T	rs138677495	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KBTBD7	NM_032138	exon1	c.C294A	p.S98R	GAACATGCTCTTG	.	99.0	4.0	153.0	0.0	.	60	.	G|1.000;A|0.000	Atlas-SNP
COG3	83548	hgsc.bcm.edu	hg19	13	46085936	46085936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COG3	NM_031431	exon16	c.T1756C	p.S586P	GCATTGTCTGCCT	.	91.0	5.0	105.0	0.0	.	52	.	.	Atlas-SNP
INTS6	26512	hgsc.bcm.edu	hg19	13	51961531	51961531	+	Silent	SNP	C	C	A	rs142545429	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	INTS6,NS,carcinoma,-1,1	INTS6	NM_012141	exon7	c.G885T	p.S295S	TGTTGGCGAATTT	.	57.0	3.0	68.0	0.0	.	72	.	C|1.000;T|0.000	Atlas-SNP
ATP7B	540	hgsc.bcm.edu	hg19	13	52539142	52539142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP7B	NM_000053	exon5	c.G1735A	p.V579I	TGTGGACACAGGA	.	88.0	4.0	108.0	0.0	.	123	.	.	Atlas-SNP
PCDH20	64881	hgsc.bcm.edu	hg19	13	61987996	61987996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCDH20	NM_022843	exon2	c.G236T	p.G79V	AGCACCCCCGCGG	.	83.0	4.0	102.0	0.0	.	265	.	.	Atlas-SNP
KLF12	11278	hgsc.bcm.edu	hg19	13	74420058	74420058	+	Silent	SNP	C	C	A	rs200955639	by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLF12	NM_007249	exon4	c.G576T	p.S192S	AGGCACCGACTGT	.	137.0	7.0	166.0	0.0	.	42	.	C|1.000;T|0.000	Atlas-SNP
POU4F1	5457	hgsc.bcm.edu	hg19	13	79175920	79175920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POU4F1	NM_006237	exon2	c.A890G	p.K297R	GGGATCTTGAGGT	.	91.0	4.0	126.0	0.0	.	43	.	.	Atlas-SNP
DOCK9	23348	hgsc.bcm.edu	hg19	13	99536145	99536145	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOCK9	NM_001130049	exon22	c.T2394C	p.G798G	TTCCGGACCATAA	.	72.0	4.0	73.0	0.0	.	311	.	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110831299	110831299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL4A1	NM_001845	exon31	c.C2429A	p.P810H	CCTCCAGGGGGAC	.	52.0	4.0	69.0	0.0	.	372	.	.	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	hg19	13	111144454	111144454	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	COL4A2	NM_001846	exon38	c.A3492G	p.G1164G	GCAGGGAGAGCTG	.	57.0	4.0	84.0	0.0	.	178	.	.	Atlas-SNP
TUBGCP3	10426	hgsc.bcm.edu	hg19	13	113174218	113174218	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TUBGCP3	NM_006322	exon15	c.G1863A	p.L621L	CACGTCCAGCCTT	.	92.0	4.0	97.0	0.0	.	74	.	.	Atlas-SNP
ATP11A	23250	hgsc.bcm.edu	hg19	13	113512575	113512575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP11A	NM_032189	exon22	c.T2638C	p.S880P	AGGATCTCTGAGC	.	121.0	5.0	168.0	0.0	.	225	.	.	Atlas-SNP
RASA3	22821	hgsc.bcm.edu	hg19	13	114780788	114780788	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASA3	NM_007368	exon14	c.G1302A	p.V434V	GCGGTCCACATAC	.	59.0	4.0	81.0	0.0	.	83	.	.	Atlas-SNP
CDC16	8881	hgsc.bcm.edu	hg19	13	115002339	115002339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDC16	NM_003903	exon3	c.G169T	p.A57S	AGAGCCGCCCATG	.	90.0	4.0	116.0	0.0	.	50	.	.	Atlas-SNP
OR4K14	122740	hgsc.bcm.edu	hg19	14	20483233	20483233	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OR4K14	NM_001004712	exon1	c.G120T	p.L40L	GTTACCCAGCATA	.	224.0	78.0	296.0	0.0	.	86	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20848600	20848600	+	Silent	SNP	G	G	T	rs200043242	by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TEP1,bladder,carcinoma,0,1	TEP1	NM_007110	exon34	c.C4797A	p.P1599P	AGCCTCGGGGAGC	.	54.0	4.0	70.0	0.0	.	224	.	G|1.000;A|0.000	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20872802	20872802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEP1	NM_007110	exon5	c.T1000C	p.S334P	AGTCAGAAGGCAG	.	92.0	4.0	114.0	0.0	.	224	.	.	Atlas-SNP
KLHL33	123103	hgsc.bcm.edu	hg19	14	20898426	20898426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHL33	NM_001109997	exon2	c.T409C	p.F137L	CCACAAAGGCCTC	.	95.0	4.0	116.0	0.0	.	37	.	.	Atlas-SNP
RNASE1	6035	hgsc.bcm.edu	hg19	14	21270132	21270132	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNASE1	NM_198235	exon3	c.G96T	p.R32R	CTTGGCCCGGGAT	.	96.0	4.0	92.0	0.0	.	14	.	.	Atlas-SNP
ARHGEF40	55701	hgsc.bcm.edu	hg19	14	21547122	21547122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ARHGEF40,NS,carcinoma,0,1	ARHGEF40	NM_018071	exon11	c.C2326A	p.H776N	AACCTGCACGTGC	.	56.0	3.0	60.0	0.0	.	84	.	.	Atlas-SNP
OXA1L	5018	hgsc.bcm.edu	hg19	14	23237290	23237290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OXA1L	NM_005015	exon3	c.G529T	p.G177W	GGGCTGGGGTCAT	.	68.0	4.0	113.0	0.0	.	49	.	.	Atlas-SNP
MMP14	4323	hgsc.bcm.edu	hg19	14	23314461	23314461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MMP14	NM_004995	exon9	c.T1303C	p.Y435H	CCCAGGTACTACC	.	49.0	4.0	40.0	0.0	.	40	.	.	Atlas-SNP
SLC7A8	23428	hgsc.bcm.edu	hg19	14	23598939	23598939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC7A8	NM_012244	exon9	c.A1183G	p.N395D	GGTAGTTGATGAA	.	80.0	4.0	165.0	0.0	.	54	.	.	Atlas-SNP
PABPN1	8106	hgsc.bcm.edu	hg19	14	23790983	23790983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PABPN1	NM_004643	exon1	c.C305T	p.P102L	AGGAGCCGGGACT	.	102.0	5.0	176.0	0.0	.	18	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23866382	23866382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH6	NM_002471	exon17	c.C2047A	p.P683T	CACCTGGAGCCTT	.	93.0	4.0	110.0	0.0	.	274	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23890225	23890225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH7	NM_000257	exon26	c.G3278T	p.R1093M	TCAATCCTTGCGT	.	100.0	5.0	160.0	0.0	.	349	.	.	Atlas-SNP
TM9SF1	10548	hgsc.bcm.edu	hg19	14	24662037	24662037	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TM9SF1	NM_001014842	exon3	c.C784A	p.R262R	CATTCCGAAGCAC	.	100.0	4.0	144.0	0.0	.	58	.	.	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24808320	24808320	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RIPK3	NM_006871	exon3	c.G372T	p.V124V	AAGCACCACTTCT	.	67.0	4.0	103.0	0.0	.	43	.	.	Atlas-SNP
PRKD1	5587	hgsc.bcm.edu	hg19	14	30066937	30066937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PRKD1_ENST00000331968,right_upper_lobe,carcinoma,0,4	PRKD1	NM_002742	exon16	c.C2194T	p.R732W	TGATCCGGGCAAA	.	24.0	2.0	34.0	0.0	.	316	.	.	Atlas-SNP
PRKD1	5587	hgsc.bcm.edu	hg19	14	30068321	30068321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKD1	NM_002742	exon15	c.C2078T	p.A693V	CGCAAAGCCACGA	.	70.0	4.0	101.0	0.0	.	316	.	.	Atlas-SNP
FBXO33	254170	hgsc.bcm.edu	hg19	14	39900875	39900875	+	Silent	SNP	A	A	G	rs377484603		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXO33	NM_203301	exon1	c.T492C	p.T164T	CCCTCCAGTCCCG	.	70.0	4.0	94.0	0.0	.	21	.	.	Atlas-SNP
FBXO33	254170	hgsc.bcm.edu	hg19	14	39900902	39900902	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXO33	NM_203301	exon1	c.G465A	p.G155G	TCCGTCCCCTGGG	.	83.0	4.0	110.0	0.0	.	21	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45465036	45465036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM179B	NM_015091	exon2	c.A2134G	p.R712G	AGAAAAAGAGTAT	.	110.0	5.0	148.0	0.0	.	115	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45633698	45633698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FANCM	NM_020937	exon10	c.G1718T	p.R573L	TACAACGAATGGG	.	80.0	4.0	128.0	0.0	.	225	.	.	Atlas-SNP
MDGA2	161357	hgsc.bcm.edu	hg19	14	47613426	47613426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MDGA2	NM_001113498	exon4	c.A647G	p.E216G	AATTGTTCTTTAG	.	112.0	5.0	146.0	0.0	.	470	.	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	hg19	14	52509008	52509008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NID2	NM_007361	exon7	c.T1640C	p.V547A	AAGTGCACGGGTG	.	82.0	5.0	137.0	0.0	.	201	.	.	Atlas-SNP
WDHD1	11169	hgsc.bcm.edu	hg19	14	55434060	55434060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDHD1	NM_007086	exon17	c.G2116A	p.V706I	TAGCAACAGCAGG	.	82.0	4.0	101.0	0.0	.	82	.	.	Atlas-SNP
SLC38A6	145389	hgsc.bcm.edu	hg19	14	61550393	61550393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC38A6	NM_001172702	exon17	c.T1529C	p.I510T	CCTTGATCTTGCA	.	92.0	4.0	99.0	0.0	.	87	.	.	Atlas-SNP
SLC38A6	145389	hgsc.bcm.edu	hg19	14	61550399	61550399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC38A6	NM_001172702	exon17	c.A1535G	p.H512R	TCTTGCACTTCCC	.	84.0	5.0	96.0	0.0	.	87	.	.	Atlas-SNP
SLC38A6	145389	hgsc.bcm.edu	hg19	14	61550409	61550409	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC38A6	NM_001172702	exon17	c.C1545A	p.T515T	CCCAACCTCCAGA	.	79.0	4.0	87.0	0.0	.	87	.	.	Atlas-SNP
PRKCH	5583	hgsc.bcm.edu	hg19	14	61920071	61920071	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRKCH	NM_006255	exon7	c.G960T	p.S320S	AACCTCGGTGAGA	.	112.0	5.0	114.0	0.0	.	89	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64641845	64641845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SYNE2	NM_182914	exon95	c.A17419G	p.S5807G	TTCCAGAGCACTG	.	113.0	5.0	88.0	0.0	.	577	.	.	Atlas-SNP
RAB15	376267	hgsc.bcm.edu	hg19	14	65417736	65417736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAB15	NM_198686	exon4	c.C380A	p.A127E	CGCCTTGCCTTCC	.	35.0	5.0	31.0	0.0	.	23	.	.	Atlas-SNP
FUT8	2530	hgsc.bcm.edu	hg19	14	66083023	66083023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	FUT8_ENST00000360689,NS,carcinoma,0,4	FUT8	NM_178155	exon5	c.G414T	p.K138N	ATTAAAGAACTTA	.	86.0	4.0	115.0	0.0	.	101	.	.	Atlas-SNP
RDH11	51109	hgsc.bcm.edu	hg19	14	68157901	68157901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RDH11	NM_001252650	exon4	c.A410G	p.K137R	GCTGTCTTCGAGT	.	89.0	4.0	129.0	0.0	.	21	.	.	Atlas-SNP
PLEKHD1	400224	hgsc.bcm.edu	hg19	14	69967627	69967627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHD1	NM_001161498	exon4	c.A373G	p.T125A	GAGCAGACCCAGT	.	60.0	4.0	64.0	0.0	.	24	.	.	Atlas-SNP
PAPLN	89932	hgsc.bcm.edu	hg19	14	73720573	73720573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAPLN	NM_173462	exon11	c.G1125T	p.E375D	CGTGGAGGAGGCT	.	94.0	4.0	145.0	0.0	.	180	.	.	Atlas-SNP
HEATR4	399671	hgsc.bcm.edu	hg19	14	73969702	73969702	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HEATR4	NM_203309	exon10	c.T2002C	p.L668L	GGATCAACTTATG	.	88.0	4.0	84.0	0.0	.	126	.	.	Atlas-SNP
ALDH6A1	4329	hgsc.bcm.edu	hg19	14	74534081	74534081	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALDH6A1	NM_005589	exon9	c.1042+2T>C	.	TTGATTACCTGCA	.	73.0	4.0	63.0	0.0	.	42	.	.	Atlas-SNP
ADCK1	57143	hgsc.bcm.edu	hg19	14	78374194	78374194	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCK1	NM_020421	exon7	c.G790T	p.E264X	CTGATGGAGTTTG	.	71.0	5.0	147.0	0.0	.	81	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	80130289	80130289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NRXN3	NM_004796	exon14	c.A2494G	p.T832A	TATCCTACAGGTA	.	93.0	4.0	115.0	0.0	.	342	.	.	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	hg19	14	80971326	80971326	+	Missense_Mutation	SNP	C	C	A	rs377362585		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CEP128	NM_152446	exon23	c.G3110T	p.G1037V	TCTAACCCACGAG	.	60.0	4.0	78.0	0.0	.	146	.	.	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	hg19	14	88974267	88974267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPN21	NM_007039	exon4	c.G448A	p.A150T	ATTTACCTTGAAC	.	79.0	4.0	95.0	0.0	.	113	.	.	Atlas-SNP
GPR68	8111	hgsc.bcm.edu	hg19	14	91700499	91700499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	GPR68,colon,carcinoma,0,1	GPR68	NM_001177676	exon2	c.G896A	p.R299H	CGGAGGCGGGCCA	.	32.0	11.0	40.0	0.0	.	32	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94158258	94158258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UNC79	NM_020818	exon47	c.C7022A	p.P2341H	TGACACCCAGCAT	.	138.0	8.0	173.0	0.0	.	366	.	.	Atlas-SNP
DEGS2	123099	hgsc.bcm.edu	hg19	14	100613207	100613207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DEGS2	NM_206918	exon3	c.C863A	p.P288Q	TGCTGCGGCAGGT	.	75.0	4.0	114.0	0.0	.	25	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102446804	102446804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1H1	NM_001376	exon5	c.A878G	p.E293G	AACGGGAGAGCCC	.	102.0	6.0	113.0	0.0	.	395	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102494143	102494143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1H1	NM_001376	exon47	c.C9236A	p.A3079E	ACCGGGCAGCTAC	.	59.0	14.0	88.0	0.0	.	395	.	.	Atlas-SNP
ZNF839	55778	hgsc.bcm.edu	hg19	14	102805186	102805186	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF839	NM_018335	exon6	c.C1693A	p.R565R	TTCCTACGGAAGA	.	149.0	35.0	217.0	0.0	.	41	.	.	Atlas-SNP
AMN	81693	hgsc.bcm.edu	hg19	14	103396365	103396365	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AMN	NM_030943	exon9	c.C948A	p.P316P	TGGGCCCGAGACA	.	76.0	4.0	114.0	0.0	.	13	.	.	Atlas-SNP
C14orf2	9556	hgsc.bcm.edu	hg19	14	104379023	104379023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C14orf2	NM_001127393	exon5	c.C208T	p.P70S	GAGCAGGCGCTGA	.	66.0	4.0	72.0	0.0	.	7	.	.	Atlas-SNP
TDRD9	122402	hgsc.bcm.edu	hg19	14	104470585	104470585	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TDRD9	NM_153046	exon14	c.A1494G	p.G498G	TGCTGGACGAGTG	.	91.0	4.0	137.0	0.0	.	175	.	.	Atlas-SNP
GPR132	29933	hgsc.bcm.edu	hg19	14	105517772	105517772	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GPR132	NM_013345	exon4	c.T702C	p.A234A	CTGGGCAGCGCTT	.	99.0	4.0	152.0	0.0	.	40	.	.	Atlas-SNP
TUBGCP5	114791	hgsc.bcm.edu	hg19	15	22873209	22873209	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TUBGCP5	NM_052903	exon23	c.T3036C	p.S1012S	GGAATCTCTAGCG	.	100.0	4.0	100.0	0.0	.	82	.	.	Atlas-SNP
GABRB3	2562	hgsc.bcm.edu	hg19	15	26812847	26812847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GABRB3	NM_021912	exon7	c.T716C	p.L239S	CTCTTCAACCGAA	.	80.0	4.0	103.0	0.0	.	338	.	.	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	hg19	15	31360167	31360167	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRPM1	NM_001252020	exon4	c.C459T	p.P153P	CAGCTTGGGCTGC	.	99.0	4.0	101.0	0.0	.	183	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33855056	33855056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RYR3	NM_001243996	exon11	c.G991T	p.D331Y	AAATTAGACTCCA	.	86.0	30.0	120.0	0.0	.	760	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35182513	35182513	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AQR	NM_014691	exon24	c.T2584C	p.L862L	CAAACAACTGGTT	.	97.0	4.0	147.0	0.0	.	139	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35212582	35212582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AQR	NM_014691	exon14	c.C1172A	p.P391H	TTTTTAGGAAGAG	.	88.0	4.0	92.0	0.0	.	139	.	.	Atlas-SNP
EIF2AK4	440275	hgsc.bcm.edu	hg19	15	40301931	40301931	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF2AK4	NM_001013703	exon26	c.G3693A	p.V1231V	TGCTGTGGTAAGC	.	96.0	4.0	138.0	0.0	.	107	.	.	Atlas-SNP
PAK6	56924	hgsc.bcm.edu	hg19	15	40565184	40565184	+	Missense_Mutation	SNP	A	A	G	rs140245743		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PAK6	NM_001128629	exon6	c.A1474G	p.I492V	ACAGACATCGTCT	.	70.0	4.0	66.0	0.0	.	49	.	A|1.000;G|0.000	Atlas-SNP
VPS18	57617	hgsc.bcm.edu	hg19	15	41187016	41187016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS18	NM_020857	exon1	c.T50C	p.V17A	CGGCCGTCTTGCA	.	48.0	4.0	127.0	0.0	.	67	.	.	Atlas-SNP
NDUFAF1	51103	hgsc.bcm.edu	hg19	15	41687071	41687071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDUFAF1	NM_016013	exon3	c.T745C	p.W249R	CCTGCCAGTAGGG	.	71.0	4.0	95.0	0.0	.	39	.	.	Atlas-SNP
LTK	4058	hgsc.bcm.edu	hg19	15	41801262	41801262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LTK	NM_002344	exon8	c.C1063A	p.P355T	TGCTGGGGTGTAT	.	163.0	7.0	238.0	0.0	.	117	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	41989188	41989188	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MGA	NM_001080541	exon3	c.G1980T	p.V660V	AGATGTGGATGGT	.	86.0	4.0	88.0	0.0	.	264	.	.	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42182404	42182404	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPTBN5	NM_016642	exon5	c.280-1G>T	.	TGGCACCTGTGGG	.	90.0	4.0	147.0	0.0	.	171	.	.	Atlas-SNP
TMEM87A	25963	hgsc.bcm.edu	hg19	15	42529654	42529654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMEM87A	NM_015497	exon9	c.A844G	p.N282D	GGATATTCTGAAA	.	89.0	4.0	101.0	0.0	.	56	.	.	Atlas-SNP
SERINC4	619189	hgsc.bcm.edu	hg19	15	44089116	44089116	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SERINC4	NM_001258031	exon7	c.A867T	p.L289L	AGCTTGTAGGAGG	.	121.0	5.0	175.0	0.0	.	18	.	.	Atlas-SNP
SPG11	80208	hgsc.bcm.edu	hg19	15	44876208	44876208	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPG11	NM_025137	exon30	c.T5670C	p.C1890C	ATGCACACAGCCA	.	98.0	5.0	102.0	0.0	.	207	.	.	Atlas-SNP
SPATA5L1	79029	hgsc.bcm.edu	hg19	15	45713246	45713246	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA5L1	NM_024063	exon8	c.T2100C	p.A700A	GGCTGCTTTGCTG	.	60.0	4.0	43.0	0.0	.	40	.	.	Atlas-SNP
SLC12A1	6557	hgsc.bcm.edu	hg19	15	48519318	48519318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A1	NM_001184832	exon5	c.C671T	p.T224I	TAACGACACTCAC	.	99.0	4.0	155.0	0.0	.	243	.	.	Atlas-SNP
SLC12A1	6557	hgsc.bcm.edu	hg19	15	48539187	48539187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A1	NM_001184832	exon12	c.C1534T	p.L512F	GCCTCCCTTGTCA	.	98.0	4.0	138.0	0.0	.	243	.	.	Atlas-SNP
SECISBP2L	9728	hgsc.bcm.edu	hg19	15	49320786	49320786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SECISBP2L	NM_001193489	exon5	c.C758G	p.P253R	GCAGTAGGGTGGG	.	140.0	51.0	218.0	0.0	.	118	.	.	Atlas-SNP
GALK2	2585	hgsc.bcm.edu	hg19	15	49611880	49611880	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GALK2	NM_002044	exon9	c.T1047C	p.C349C	GATATGTGAAGAA	.	100.0	4.0	135.0	0.0	.	78	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54307628	54307628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	UNC13C_ENST00000260323,colon,carcinoma,0,2	UNC13C	NM_001080534	exon1	c.A2528G	p.E843G	CAAATGAGTCAAG	.	69.0	3.0	76.0	1.0	.	674	.	.	Atlas-SNP
CCPG1	9236	hgsc.bcm.edu	hg19	15	55664085	55664085	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCPG1	NM_020739	exon6	c.G612A	p.K204K	CAACTCCTTAGAA	.	204.0	34.0	271.0	0.0	.	74	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62202491	62202491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS13C	NM_020821	exon64	c.G8729T	p.W2910L	TCTGGCCAAAATG	.	78.0	4.0	100.0	0.0	.	506	.	.	Atlas-SNP
FBXL22	283807	hgsc.bcm.edu	hg19	15	63889776	63889776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FBXL22	NM_203373	exon1	c.A185G	p.K62R	TCCAGAAGGACAA	.	83.0	4.0	80.0	0.0	.	4	.	.	Atlas-SNP
PARP16	54956	hgsc.bcm.edu	hg19	15	65578651	65578651	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARP16	NM_017851	exon1	c.G114T	p.S38S	CAGCACCGAGTCG	.	78.0	4.0	68.0	0.0	.	23	.	.	Atlas-SNP
IGDCC3	9543	hgsc.bcm.edu	hg19	15	65621487	65621487	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IGDCC3	NM_004884	exon15	c.2206-1G>T	.	ATCCTGCTGGGGA	.	46.0	16.0	51.0	0.0	.	82	.	.	Atlas-SNP
ARIH1	25820	hgsc.bcm.edu	hg19	15	72767267	72767267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARIH1	NM_005744	exon1	c.A287G	p.E96G	AGCAGGAGGAGGA	.	79.0	4.0	86.0	0.0	.	42	.	.	Atlas-SNP
PML	5371	hgsc.bcm.edu	hg19	15	74327563	74327563	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PML	NM_033239	exon8	c.C1761A	p.S587S	CCACTCCTCGCCA	.	94.0	4.0	159.0	0.0	.	169	.	.	Atlas-SNP
CYP1A1	1543	hgsc.bcm.edu	hg19	15	75015213	75015213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYP1A1	NM_000499	exon2	c.A226G	p.I76V	TTCGGATCTGCAG	.	99.0	5.0	142.0	0.0	.	60	.	.	Atlas-SNP
NEIL1	79661	hgsc.bcm.edu	hg19	15	75647049	75647049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEIL1	NM_001256552	exon9	c.T1250C	p.L417P	GAGACCTTCCTAA	.	66.0	4.0	82.0	0.0	.	36	.	.	Atlas-SNP
ACSBG1	23205	hgsc.bcm.edu	hg19	15	78474373	78474373	+	Missense_Mutation	SNP	C	C	A	rs372447099	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACSBG1	NM_015162	exon8	c.G1009T	p.D337Y	ACAGGTCGTAGAT	.	48.0	4.0	70.0	0.0	.	79	.	.	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	hg19	15	84561455	84561455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAMTSL3	NM_207517	exon13	c.A1282G	p.T428A	CCTTGGACTGCAT	.	91.0	4.0	120.0	0.0	.	290	.	.	Atlas-SNP
NTRK3	4916	hgsc.bcm.edu	hg19	15	88679734	88679734	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	NTRK3_ENST00000360948,NS,carcinoma,0,3	NTRK3	NM_001243101	exon8	c.G729C	p.W243C	GACTATCCAGTCC	.	75.0	4.0	134.0	0.0	.	587	.	.	Atlas-SNP
MFGE8	4240	hgsc.bcm.edu	hg19	15	89442944	89442944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MFGE8	NM_005928	exon7	c.C969A	p.Y323X	ATTACTGTAGGCA	.	97.0	4.0	125.0	0.0	.	60	.	.	Atlas-SNP
RLBP1	6017	hgsc.bcm.edu	hg19	15	89760380	89760380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	RLBP1,face,carcinoma,0,1	RLBP1	NM_000326	exon5	c.A317G	p.N106S	CCCACGTTGAACT	.	74.0	3.0	108.0	0.0	.	34	.	.	Atlas-SNP
TICRR	90381	hgsc.bcm.edu	hg19	15	90142664	90142664	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_152259	exon8	c.C2010A	p.T670T	CTCAACCGTTAAA	.	92.0	4.0	144.0	0.0	.	.	.	.	Atlas-SNP
VPS33B	26276	hgsc.bcm.edu	hg19	15	91549273	91549273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS33B	NM_018668	exon12	c.G869A	p.R290Q	TCGTTCCGAATCT	.	110.0	5.0	113.0	0.0	.	42	.	.	Atlas-SNP
NR2F2	7026	hgsc.bcm.edu	hg19	15	96877485	96877485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NR2F2	NM_021005	exon2	c.G623T	p.G208V	TCATGGGTATCGA	.	112.0	5.0	135.0	0.0	.	35	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1261545	1261545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNA1H	NM_021098	exon23	c.A4415G	p.Q1472R	AGGCACAGTGCCG	.	89.0	4.0	137.0	0.0	.	317	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1270004	1270004	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CACNA1H	NM_021098	exon35	c.G6072A	p.L2024L	TTCCTTGGAAGGG	.	99.0	4.0	118.0	0.0	.	317	.	.	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	hg19	16	2024958	2024958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TBL3,NS,carcinoma,0,1	TBL3	NM_006453	exon7	c.G494T	p.R165L	CTACACGCCTGCT	.	56.0	3.0	109.0	1.0	.	54	.	.	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	hg19	16	2027159	2027159	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TBL3	NM_006453	exon15	c.T1545C	p.G515G	GCTGGGTGTCTTC	.	40.0	4.0	57.0	0.0	.	54	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	hg19	16	2339468	2339468	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA3	NM_001089	exon20	c.G2667A	p.E889E	CTCCTCCTCGATG	.	67.0	16.0	110.0	0.0	.	176	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2812361	2812361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRRM2	NM_016333	exon11	c.G1832T	p.R611L	CAGCCCGGAGGGG	.	54.0	5.0	89.0	0.0	.	263	.	.	Atlas-SNP
CCDC64B	146439	hgsc.bcm.edu	hg19	16	3078749	3078749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC64B	NM_001103175	exon7	c.G1190T	p.G397V	GCCTCCCCAGGGT	.	118.0	6.0	143.0	0.0	.	19	.	.	Atlas-SNP
ZNF75A	7627	hgsc.bcm.edu	hg19	16	3367499	3367499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF75A	NM_153028	exon6	c.C521G	p.S174C	TTAGCTCTGACCT	.	199.0	62.0	220.0	0.0	.	34	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3778391	3778391	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CREBBP	NM_004380	exon31	c.C6657A	p.A2219A	CATGCCGGCACTC	.	76.0	5.0	82.0	0.0	.	546	.	.	Atlas-SNP
DNAJA3	9093	hgsc.bcm.edu	hg19	16	4500484	4500484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNAJA3	NM_001135110	exon10	c.C1325T	p.T442I	GCGTCACCCTCAC	.	66.0	4.0	72.0	0.0	.	52	.	.	Atlas-SNP
ABAT	18	hgsc.bcm.edu	hg19	16	8866644	8866644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABAT	NM_001127448	exon12	c.A824G	p.D275G	TGGAGGATCTGAT	.	100.0	4.0	103.0	0.0	.	46	.	.	Atlas-SNP
USP7	7874	hgsc.bcm.edu	hg19	16	9015082	9015082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP7	NM_003470	exon4	c.C454A	p.R152S	TACGACGACTGAA	.	135.0	8.0	148.0	0.0	.	116	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9934644	9934644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIN2A	NM_000833	exon8	c.G1511T	p.R504L	ACTGCCCGTTGAT	.	72.0	4.0	109.0	0.0	.	366	.	.	Atlas-SNP
PDXDC1	23042	hgsc.bcm.edu	hg19	16	15127208	15127208	+	Silent	SNP	C	C	A	rs151129728	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PDXDC1	NM_015027	exon19	c.C1764A	p.L588L	TGAGCTCGTGGAG	.	72.0	4.0	86.0	0.0	.	59	.	C|1.000;T|0.000	Atlas-SNP
USP31	57478	hgsc.bcm.edu	hg19	16	23080459	23080459	+	Silent	SNP	G	G	T	rs201814190	by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	USP31,leg,malignant_melanoma,0,1	USP31	NM_020718	exon16	c.C2967A	p.I989I	ATAAGCGATCTGA	.	27.0	4.0	50.0	0.0	.	122	.	G|1.000;A|0.000	Atlas-SNP
USP31	57478	hgsc.bcm.edu	hg19	16	23080589	23080589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon16	c.A2837G	p.E946G	ACGCCTTCCATGA	.	96.0	5.0	103.0	0.0	.	122	.	.	Atlas-SNP
USP31	57478	hgsc.bcm.edu	hg19	16	23091273	23091273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	USP31	NM_020718	exon13	c.T2170C	p.Y724H	CTGTGTAGTGCCC	.	75.0	4.0	116.0	0.0	.	122	.	.	Atlas-SNP
XPO6	23214	hgsc.bcm.edu	hg19	16	28167437	28167437	+	Missense_Mutation	SNP	T	T	A	rs369899782	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	XPO6	NM_015171	exon7	c.A1055T	p.N352I	TGGGCATTGTTAT	.	544.0	173.0	773.0	0.0	.	177	.	.	Atlas-SNP
TUFM	7284	hgsc.bcm.edu	hg19	16	28856082	28856082	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TUFM,rectum,carcinoma,0,1	TUFM	NM_003321	exon5	c.C621A	p.T207T	AAACTCGGTGAGC	.	100.0	4.0	126.0	0.0	.	33	.	.	Atlas-SNP
SPN	6693	hgsc.bcm.edu	hg19	16	29675060	29675060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPN	NM_001030288	exon2	c.T11C	p.L4P	CCACGCTTCTCCT	.	104.0	5.0	122.0	0.0	.	44	.	.	Atlas-SNP
MAZ	4150	hgsc.bcm.edu	hg19	16	29820871	29820871	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAZ	NM_001042539	exon5	c.G1290T	p.T430T	CACCACGGCAGCA	.	125.0	5.0	141.0	0.0	.	48	.	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	hg19	16	30002499	30002499	+	Silent	SNP	G	G	T	rs138517482	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAOK2	NM_004783	exon19	c.G2760T	p.L920L	GGCTCTGGGGGGC	.	79.0	4.0	97.0	0.0	.	142	.	G|1.000;C|0.000	Atlas-SNP
DOC2A	8448	hgsc.bcm.edu	hg19	16	30020840	30020840	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DOC2A	NM_003586	exon3	c.C301A	p.R101R	AGGCCCGGTCGTA	.	57.0	4.0	58.0	0.0	.	40	.	.	Atlas-SNP
GDPD3	79153	hgsc.bcm.edu	hg19	16	30124047	30124047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GDPD3	NM_024307	exon3	c.G250A	p.V84M	GTGACACCACCAC	.	40.0	13.0	52.0	0.0	.	23	.	.	Atlas-SNP
ZNF629	23361	hgsc.bcm.edu	hg19	16	30793344	30793344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF629	NM_001080417	exon3	c.C2305A	p.R769S	AGCAGCGGTAGGG	.	89.0	4.0	89.0	0.0	.	44	.	.	Atlas-SNP
SETD1A	9739	hgsc.bcm.edu	hg19	16	30976649	30976649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD1A	NM_014712	exon7	c.A1586G	p.E529G	GGAGTGAGGTGCC	.	101.0	5.0	133.0	0.0	.	143	.	.	Atlas-SNP
HSD3B7	80270	hgsc.bcm.edu	hg19	16	30997766	30997766	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HSD3B7	NM_025193	exon4	c.T345C	p.A115A	CGAGGCTTGTGTG	.	123.0	6.0	96.0	0.0	.	33	.	.	Atlas-SNP
BCKDK	10295	hgsc.bcm.edu	hg19	16	31123498	31123498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BCKDK	NM_005881	exon12	c.T1151C	p.L384P	GGTCTCTGCAGCT	.	90.0	4.0	90.0	0.0	.	52	.	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	hg19	16	31926476	31926476	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF267,right_upper_lobe,carcinoma,0,1	ZNF267	NM_003414	exon4	c.A906G	p.K302K	TGATAAAGATCTT	.	72.0	3.0	99.0	0.0	.	94	.	.	Atlas-SNP
SHCBP1	79801	hgsc.bcm.edu	hg19	16	46633834	46633834	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHCBP1	NM_024745	exon9	c.C1254A	p.G418G	GCCTTTGCCCCTC	.	70.0	4.0	110.0	0.0	.	54	.	.	Atlas-SNP
NLRC5	84166	hgsc.bcm.edu	hg19	16	57113154	57113154	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NLRC5	NM_032206	exon44	c.T5187C	p.A1729A	CCTGGCTGGAGGG	.	100.0	4.0	142.0	0.0	.	186	.	.	Atlas-SNP
C16orf80	29105	hgsc.bcm.edu	hg19	16	58150036	58150036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C16orf80	NM_013242	exon3	c.C185A	p.P62H	TCTGCAGGGCATG	.	96.0	4.0	170.0	0.0	.	17	.	.	Atlas-SNP
DYNC1LI2	1783	hgsc.bcm.edu	hg19	16	66764024	66764024	+	Silent	SNP	G	G	T	rs145562779	bycluster;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DYNC1LI2	NM_006141	exon8	c.C1032A	p.P344P	TCTCACGGGAGGT	.	79.0	4.0	105.0	0.0	.	37	.	G|1.000;A|0.000	Atlas-SNP
ZDHHC1	29800	hgsc.bcm.edu	hg19	16	67432186	67432186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZDHHC1	NM_013304	exon8	c.C856A	p.R286S	GTGGGCGGTGCTG	.	61.0	4.0	78.0	0.0	.	28	.	.	Atlas-SNP
RLTPR	146206	hgsc.bcm.edu	hg19	16	67679452	67679452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RLTPR	NM_001013838	exon2	c.C50T	p.T17I	AGATCACCAGGTT	.	75.0	4.0	109.0	0.0	.	124	.	.	Atlas-SNP
TSNAXIP1	55815	hgsc.bcm.edu	hg19	16	67859899	67859899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSNAXIP1	NM_018430	exon9	c.A902G	p.K301R	CGCTGAAGGAACG	.	64.0	4.0	94.0	0.0	.	66	.	.	Atlas-SNP
ESRP2	80004	hgsc.bcm.edu	hg19	16	68269764	68269764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ESRP2	NM_024939	exon1	c.C185A	p.P62Q	CTCCGCGGCTCAA	.	85.0	4.0	138.0	0.0	.	118	.	.	Atlas-SNP
MTSS1L	92154	hgsc.bcm.edu	hg19	16	70698860	70698860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MTSS1L,NS,carcinoma,0,1	MTSS1L	NM_138383	exon13	c.C1268A	p.P423Q	GGTCGCGGTGCCT	.	62.0	3.0	93.0	0.0	.	22	.	.	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	hg19	16	72163129	72163129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PMFBP1	NM_031293	exon13	c.A1786G	p.R596G	GCTCCCTGTGCTG	.	84.0	4.0	103.0	0.0	.	101	.	.	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	hg19	16	72184647	72184647	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PMFBP1	NM_031293	exon5	c.T496C	p.L166L	CGGCCAAGGCGAG	.	94.0	4.0	111.0	0.0	.	101	.	.	Atlas-SNP
CMIP	80790	hgsc.bcm.edu	hg19	16	81654516	81654516	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CMIP	NM_198390	exon3	c.T462C	p.H154H	GTTCCATTCTCTG	.	98.0	4.0	125.0	0.0	.	37	.	.	Atlas-SNP
MBTPS1	8720	hgsc.bcm.edu	hg19	16	84097002	84097002	+	Missense_Mutation	SNP	A	A	G	rs138967616		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MBTPS1	NM_003791	exon19	c.T2480C	p.I827T	CCCAAAATGGGGA	.	121.0	5.0	143.0	0.0	.	85	.	A|1.000;G|0.000	Atlas-SNP
TAF1C	9013	hgsc.bcm.edu	hg19	16	84212983	84212983	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAF1C	NM_005679	exon14	c.G2174A	p.W725X	CCTGCCCAGGCTT	.	84.0	4.0	122.0	0.0	.	60	.	.	Atlas-SNP
GALNS	2588	hgsc.bcm.edu	hg19	16	88909227	88909227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GALNS	NM_000512	exon2	c.G131A	p.G44D	AGGTCACCCCATC	.	84.0	4.0	92.0	0.0	.	37	.	.	Atlas-SNP
METTL16	79066	hgsc.bcm.edu	hg19	17	2323799	2323799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	METTL16	NM_024086	exon10	c.A1154G	p.K385R	TCTCTTTTCTTTC	.	74.0	4.0	50.0	0.0	.	75	.	.	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	hg19	17	2599486	2599486	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_015229	exon13	c.T2241C	p.A747A	GAAGGCAGCCGCG	.	99.0	6.0	158.0	0.0	.	.	.	.	Atlas-SNP
RAP1GAP2	23108	hgsc.bcm.edu	hg19	17	2921396	2921396	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAP1GAP2	NM_015085	exon18	c.G1536A	p.V512V	CATGGTGGGCGGC	.	54.0	4.0	77.0	0.0	.	90	.	.	Atlas-SNP
GSG2	83903	hgsc.bcm.edu	hg19	17	3628016	3628016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GSG2	NM_031965	exon1	c.G787T	p.G263W	GCAGATGGGAAGA	.	75.0	4.0	110.0	0.0	.	48	.	.	Atlas-SNP
MYBBP1A	10514	hgsc.bcm.edu	hg19	17	4458458	4458458	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYBBP1A	NM_014520	exon1	c.G162A	p.T54T	CTTCTCCGTGGCC	.	77.0	4.0	82.0	0.0	.	69	.	.	Atlas-SNP
MINK1	50488	hgsc.bcm.edu	hg19	17	4793904	4793904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MINK1	NM_170663	exon14	c.G1440T	p.Q480H	CCTGCAGCAGCAG	.	64.0	4.0	72.0	0.0	.	110	.	.	Atlas-SNP
SLC52A1	55065	hgsc.bcm.edu	hg19	17	4936582	4936582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_017986	exon4	c.G1108T	p.G370C	TGGTGCCCACCAG	.	88.0	4.0	105.0	0.0	.	.	.	.	Atlas-SNP
RABEP1	9135	hgsc.bcm.edu	hg19	17	5283729	5283729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RABEP1	NM_004703	exon16	c.A2342G	p.E781G	TGGAAGAGCAGTT	.	75.0	4.0	107.0	0.0	.	59	.	.	Atlas-SNP
NUP88	4927	hgsc.bcm.edu	hg19	17	5317451	5317451	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NUP88	NM_002532	exon3	c.C471A	p.T157T	TGGAGTGGTACTA	.	66.0	4.0	62.0	0.0	.	47	.	.	Atlas-SNP
TEKT1	83659	hgsc.bcm.edu	hg19	17	6716342	6716342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TEKT1	NM_053285	exon6	c.C660A	p.F220L	GCTGGAGAAGTCC	.	65.0	4.0	95.0	0.0	.	49	.	.	Atlas-SNP
DVL2	1856	hgsc.bcm.edu	hg19	17	7132581	7132581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL2	NM_004422	exon8	c.T830C	p.F277S	CCCAGGAAGTTGT	.	79.0	4.0	115.0	0.0	.	49	.	.	Atlas-SNP
DVL2	1856	hgsc.bcm.edu	hg19	17	7133190	7133190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DVL2	NM_004422	exon5	c.T593C	p.L198P	GTCATGAGGGTAG	.	50.0	4.0	93.0	0.0	.	49	.	.	Atlas-SNP
TNK1	8711	hgsc.bcm.edu	hg19	17	7290400	7290400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNK1	NM_001251902	exon9	c.G1339T	p.G447C	GCGGGGGGCTTGC	.	67.0	4.0	97.0	0.0	.	31	.	.	Atlas-SNP
ZBTB4	57659	hgsc.bcm.edu	hg19	17	7370026	7370026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZBTB4	NM_001128833	exon3	c.T95C	p.V32A	AGGGTGACGTCAC	.	67.0	4.0	113.0	0.0	.	163	.	.	Atlas-SNP
SENP3	26168	hgsc.bcm.edu	hg19	17	7466514	7466514	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SENP3	NM_015670	exon2	c.C121A	p.R41R	AAACCCCGACTCA	.	83.0	4.0	91.0	0.0	.	18	.	.	Atlas-SNP
KDM6B	23135	hgsc.bcm.edu	hg19	17	7749921	7749921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDM6B	NM_001080424	exon8	c.C574T	p.R192W	GCCAAGCGGGGAG	.	63.0	26.0	73.0	0.0	.	95	.	.	Atlas-SNP
CTC1	80169	hgsc.bcm.edu	hg19	17	8138160	8138160	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CTC1	NM_025099	exon9	c.T1524C	p.A508A	GGTAGGAGCCAGG	.	130.0	6.0	208.0	0.0	.	75	.	.	Atlas-SNP
ARHGEF15	22899	hgsc.bcm.edu	hg19	17	8221748	8221748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARHGEF15	NM_025014	exon10	c.A1748G	p.N583S	AGGAGAATGCCCA	.	56.0	5.0	105.0	0.0	.	97	.	.	Atlas-SNP
NDEL1	81565	hgsc.bcm.edu	hg19	17	8347657	8347657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NDEL1	NM_001025579	exon2	c.C68A	p.S23Y	AACTTTCCTTGAA	.	88.0	4.0	120.0	0.0	.	47	.	.	Atlas-SNP
ZNF18	7566	hgsc.bcm.edu	hg19	17	11896054	11896054	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF18	NM_144680	exon4	c.A93G	p.Q31Q	TTCCTCTTGAAGG	.	95.0	4.0	96.0	0.0	.	42	.	.	Atlas-SNP
TOM1L2	146691	hgsc.bcm.edu	hg19	17	17801962	17801962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TOM1L2	NM_001033551	exon3	c.A164G	p.K55R	CGCTTCTTCAGGG	.	295.0	119.0	314.0	1.0	.	54	.	.	Atlas-SNP
ATPAF2	91647	hgsc.bcm.edu	hg19	17	17921898	17921898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATPAF2	NM_145691	exon8	c.A835G	p.S279G	TGGTGCTCTCGGA	.	86.0	4.0	120.0	0.0	.	15	.	.	Atlas-SNP
RNF112	7732	hgsc.bcm.edu	hg19	17	19314770	19314770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF112	NM_007148	exon1	c.A49G	p.K17E	CTTGGCAAACGGG	.	28.0	4.0	35.0	0.0	.	37	.	.	Atlas-SNP
SLC47A1	55244	hgsc.bcm.edu	hg19	17	19476161	19476161	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC47A1	NM_018242	exon16	c.T1473C	p.D491D	TCAGGATCCGCTT	.	100.0	4.0	110.0	0.0	.	55	.	.	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	hg19	17	20107661	20107661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPECC1	NM_001033553	exon4	c.C299G	p.T100S	CAACAACTAAACG	.	63.0	26.0	102.0	0.0	.	100	.	.	Atlas-SNP
SPAG5	10615	hgsc.bcm.edu	hg19	17	26907029	26907029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPAG5	NM_006461	exon16	c.A2795G	p.E932G	TAACCTTCATCTG	.	140.0	6.0	134.0	0.0	.	92	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27022398	27022398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SUPT6H	NM_003170	exon29	c.T3803C	p.M1268T	GCATCATGAAGAT	.	158.0	7.0	113.0	0.0	.	165	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27027431	27027431	+	Silent	SNP	G	G	T	rs373264371	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SUPT6H	NM_003170	exon35	c.G4707T	p.A1569A	TGCTGCGGTGACA	.	94.0	4.0	86.0	0.0	.	165	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27438814	27438814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYO18A	NM_078471	exon16	c.T2666C	p.V889A	CCTGGCACCAGAG	.	68.0	4.0	81.0	0.0	.	217	.	.	Atlas-SNP
CRYBA1	1411	hgsc.bcm.edu	hg19	17	27580737	27580737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CRYBA1	NM_005208	exon5	c.C437T	p.P146L	ACTACCCCTCCTT	.	162.0	27.0	123.0	0.0	.	15	.	.	Atlas-SNP
ANKRD13B	124930	hgsc.bcm.edu	hg19	17	27920706	27920706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ANKRD13B	NM_152345	exon1	c.T67C	p.W23R	CTCGTGTGGCACA	.	97.0	4.0	95.0	0.0	.	39	.	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	hg19	17	29192785	29192785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATAD5	NM_024857	exon11	c.T3200C	p.I1067T	AACTTATAGGAAA	.	229.0	68.0	279.0	0.0	.	150	.	.	Atlas-SNP
SPACA3	124912	hgsc.bcm.edu	hg19	17	31323887	31323887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPACA3	NM_173847	exon3	c.G370T	p.G124C	ACAAGCGGTTTCA	.	123.0	5.0	141.0	0.0	.	35	.	.	Atlas-SNP
RAD51D	5892	hgsc.bcm.edu	hg19	17	33445530	33445530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RAD51D	NM_002878	exon3	c.G253T	p.G85C	CAATGCCAGTGGA	.	79.0	4.0	62.0	0.0	.	53	.	.	Atlas-SNP
TAF15	8148	hgsc.bcm.edu	hg19	17	34171487	34171487	+	Missense_Mutation	SNP	G	G	T	rs71381481	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TAF15	NM_139215	exon15	c.G1184T	p.R395L	ATTTCCGGGGGAG	.	182.0	8.0	158.0	0.0	.	46	.	G|0.999;A|0.001	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37872839	37872839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ERBB2,bladder,carcinoma,0,1	ERBB2	NM_004448	exon14	c.C1718A	p.S573X	ATGGCTCAGTGAC	.	73.0	4.0	132.0	0.0	.	429	.	.	Atlas-SNP
NR1D1	9572	hgsc.bcm.edu	hg19	17	38252091	38252091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NR1D1	NM_021724	exon5	c.T854C	p.V285A	TCCTCCACTGTGG	.	97.0	4.0	115.0	0.0	.	45	.	.	Atlas-SNP
KRT27	342574	hgsc.bcm.edu	hg19	17	38936687	38936687	+	Silent	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT27	NM_181537	exon3	c.T549A	p.L183L	CTGGTGAAGCGCT	.	82.0	4.0	123.0	0.0	.	41	.	.	Atlas-SNP
KRTAP9-9	81870	hgsc.bcm.edu	hg19	17	39411917	39411917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRTAP9-9	NM_030975	exon1	c.A280G	p.T94A	GGCCAAACCAGCT	.	100.0	5.0	148.0	0.0	.	24	.	.	Atlas-SNP
KRT16	3868	hgsc.bcm.edu	hg19	17	39766790	39766790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRT16	NM_005557	exon6	c.A1073G	p.E358G	CTGTTCTCCAGGG	.	83.0	4.0	98.0	0.0	.	45	.	.	Atlas-SNP
KLHL10	317719	hgsc.bcm.edu	hg19	17	39998458	39998458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLHL10	NM_152467	exon2	c.A578G	p.D193G	AGAAAGATGAGCT	.	87.0	4.0	121.0	0.0	.	67	.	.	Atlas-SNP
KCNH4	23415	hgsc.bcm.edu	hg19	17	40321671	40321671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KCNH4	NM_012285	exon9	c.G1414A	p.G472R	CGTTCCCGAACAC	.	66.0	4.0	73.0	0.0	.	105	.	.	Atlas-SNP
VPS25	84313	hgsc.bcm.edu	hg19	17	40928289	40928289	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	VPS25	NM_032353	exon5	c.C369A	p.S123S	CAACTCCGTCTTT	.	121.0	5.0	174.0	0.0	.	11	.	.	Atlas-SNP
CNTD1	124817	hgsc.bcm.edu	hg19	17	40959859	40959859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CNTD1	NM_173478	exon6	c.C799A	p.Q267K	TTCATCCAAAACC	.	86.0	5.0	110.0	0.0	.	22	.	.	Atlas-SNP
PTGES3L-AARSD1	100885850	hgsc.bcm.edu	hg19	17	41108253	41108253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	AARSD1,NS,carcinoma,0,1	PTGES3L-AARSD1	NM_001136042	exon11	c.G1153A	p.G385R	GGGTCCCACAGCA	.	47.0	2.0	86.0	0.0	.	15	.	.	Atlas-SNP
MEOX1	4222	hgsc.bcm.edu	hg19	17	41720883	41720883	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MEOX1	NM_004527	exon2	c.G615T	p.A205A	GTTTACCGCAATC	.	87.0	4.0	114.0	0.0	.	29	.	.	Atlas-SNP
CD300LG	146894	hgsc.bcm.edu	hg19	17	41924620	41924620	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD300LG	NM_001168323	exon1	c.G36A	p.L12L	CCTGCTGCTCCCA	.	94.0	22.0	106.0	0.0	.	46	.	.	Atlas-SNP
TMUB2	79089	hgsc.bcm.edu	hg19	17	42266555	42266555	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMUB2	NM_001076674	exon3	c.G201A	p.L67L	GCTCCTGGGCGCT	.	94.0	4.0	114.0	0.0	.	29	.	.	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	hg19	17	42937415	42937415	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EFTUD2	NM_004247	exon19	c.1720-2A>G	.	TGAGCCTGAGATC	.	116.0	5.0	145.0	0.0	.	85	.	.	Atlas-SNP
KIF18B	146909	hgsc.bcm.edu	hg19	17	43005599	43005599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF18B	NM_001264573	exon13	c.C2107A	p.P703T	TGGCTGGGCAAAC	.	79.0	4.0	127.0	0.0	.	63	.	.	Atlas-SNP
KIF18B	146909	hgsc.bcm.edu	hg19	17	43012257	43012257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF18B	NM_001264573	exon4	c.T518C	p.L173P	ATGGCAAGGGGCC	.	56.0	5.0	57.0	0.0	.	63	.	.	Atlas-SNP
FMNL1	752	hgsc.bcm.edu	hg19	17	43314685	43314685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	FMNL1,caecum,carcinoma,0,1	FMNL1	NM_005892	exon8	c.T761C	p.V254A	CCTGTGTCAATGA	.	97.0	4.0	120.0	0.0	.	78	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	hg19	17	45249328	45249328	+	Missense_Mutation	SNP	G	G	A	rs142853734		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CDC27_ENST00000531206,NS,haematopoietic_neoplasm,0,2	CDC27	NM_001114091	exon3	c.C206T	p.P69L	CATTGCGGTGTAG	.	55.0	3.0	76.0	0.0	.	337	.	.	Atlas-SNP
SPATA20	64847	hgsc.bcm.edu	hg19	17	48628203	48628203	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SPATA20	NM_022827	exon11	c.C1308A	p.T436T	TGCCACCGAGCCG	.	125.0	5.0	169.0	0.0	.	59	.	.	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	hg19	17	48750986	48750986	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCC3	NM_003786	exon19	c.G2566T	p.E856X	CCCGATGAGGACC	.	87.0	4.0	138.0	0.0	.	138	.	.	Atlas-SNP
WFIKKN2	124857	hgsc.bcm.edu	hg19	17	48913333	48913333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WFIKKN2	NM_175575	exon1	c.G35A	p.R12H	GGTCTCGCTGGGA	.	110.0	41.0	127.0	0.0	.	69	.	.	Atlas-SNP
STXBP4	252983	hgsc.bcm.edu	hg19	17	53150293	53150293	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	STXBP4	NM_178509	exon13	c.C1044A	p.A348A	AAGAGCCCTGCGT	.	74.0	5.0	102.0	0.0	.	41	.	.	Atlas-SNP
LPO	4025	hgsc.bcm.edu	hg19	17	56344752	56344752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPO	NM_006151	exon12	c.A1736G	p.Q579R	AGCCGCAGACACT	.	62.0	4.0	88.0	0.0	.	73	.	.	Atlas-SNP
TEX14	56155	hgsc.bcm.edu	hg19	17	56690838	56690838	+	Missense_Mutation	SNP	G	G	T	rs150820263	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TEX14_ENST00000240361,colon,carcinoma,0,2	TEX14	NM_001201457	exon9	c.C967A	p.R323S	CAAGGCGGGTTTT	.	144.0	7.0	198.0	1.0	.	343	.	G|1.000;A|0.000	Atlas-SNP
DDX42	11325	hgsc.bcm.edu	hg19	17	61889542	61889542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDX42	NM_203499	exon14	c.C1649A	p.P550Q	ACATCCCAGTCCT	.	100.0	4.0	170.0	0.0	.	86	.	.	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	hg19	17	62022891	62022891	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCN4A	NM_000334	exon19	c.C3549A	p.A1183A	CTTGCCGGCAAAC	.	136.0	6.0	204.0	0.0	.	205	.	.	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	hg19	17	67017907	67017907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ABCA9	NM_080283	exon18	c.G2377A	p.G793R	ATTTTCCTTCTAA	.	57.0	4.0	62.0	0.0	.	192	.	.	Atlas-SNP
CPSF4L	642843	hgsc.bcm.edu	hg19	17	71257927	71257927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CPSF4L	NM_001129885	exon1	c.T31C	p.F11L	AGGTGAACCGCTC	.	62.0	4.0	95.0	0.0	.	8	.	.	Atlas-SNP
KIF19	124602	hgsc.bcm.edu	hg19	17	72324604	72324604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIF19	NM_153209	exon2	c.A80G	p.E27G	AGCTGGAGGAAGG	.	49.0	4.0	78.0	0.0	.	102	.	.	Atlas-SNP
CD300C	10871	hgsc.bcm.edu	hg19	17	72537867	72537867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD300C	NM_006678	exon4	c.T536C	p.F179S	TTGCTGAACAGGG	.	55.0	4.0	76.0	0.0	.	41	.	.	Atlas-SNP
SLC16A5	9121	hgsc.bcm.edu	hg19	17	73100204	73100204	+	Silent	SNP	G	G	C	rs141647560	byfrequency;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SLC16A5_ENST00000450736,colon,carcinoma,+1,2	SLC16A5	NM_001271765	exon6	c.G1293C	p.A431A	CGCGGCGGATGCC	.	133.0	39.0	176.0	0.0	.	80	.	G|0.999;A|0.001	Atlas-SNP
CASKIN2	57513	hgsc.bcm.edu	hg19	17	73501024	73501024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CASKIN2,NS,carcinoma,0,1	CASKIN2	NM_020753	exon11	c.C1061A	p.A354D	AGGCGGGCTGCAG	.	71.0	3.0	97.0	2.0	.	66	.	.	Atlas-SNP
LLGL2	3993	hgsc.bcm.edu	hg19	17	73570325	73570325	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LLGL2	NM_004524	exon23	c.T2937C	p.A979A	GCGCGCTCTGCTC	.	96.0	4.0	113.0	0.0	.	155	.	.	Atlas-SNP
RECQL5	9400	hgsc.bcm.edu	hg19	17	73657713	73657713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RECQL5	NM_001003715	exon5	c.G847T	p.G283C	TCACACCCCTGCA	.	56.0	4.0	73.0	0.0	.	77	.	.	Atlas-SNP
EXOC7	23265	hgsc.bcm.edu	hg19	17	74081819	74081819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EXOC7	NM_001145297	exon15	c.C1708A	p.P570T	GAGCTGGGTCCTC	.	91.0	4.0	127.0	0.0	.	47	.	.	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76045435	76045435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNRC6C	NM_018996	exon4	c.C292A	p.L98I	ATTAATCTTAACC	.	114.0	5.0	188.0	0.0	.	173	.	.	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76046560	76046560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TNRC6C	NM_018996	exon4	c.G1417A	p.D473N	AAAAATGACAATG	.	76.0	4.0	99.0	0.0	.	173	.	.	Atlas-SNP
EIF4A3	9775	hgsc.bcm.edu	hg19	17	78109863	78109863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EIF4A3	NM_014740	exon11	c.C1159A	p.R387S	GGATGCGGATGTC	.	58.0	4.0	81.0	0.0	.	35	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78341922	78341922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RNF213	NM_001256071	exon44	c.C12134A	p.P4045Q	TCTCTCCAGCTGT	.	110.0	5.0	138.0	0.0	.	766	.	.	Atlas-SNP
C17orf70	80233	hgsc.bcm.edu	hg19	17	79514378	79514378	+	Missense_Mutation	SNP	C	C	A	rs72854496	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C17orf70	NM_025161	exon5	c.G1730T	p.R577L	TCCCGCCGAGCAC	.	45.0	4.0	42.0	0.0	.	79	.	C|1.000;T|0.000	Atlas-SNP
P4HB	5034	hgsc.bcm.edu	hg19	17	79817083	79817083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	P4HB	NM_000918	exon2	c.A326G	p.D109G	GCCGTGTCTCCAT	.	82.0	6.0	116.0	0.0	.	43	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80046286	80046286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FASN	NM_004104	exon16	c.C2573T	p.S858L	GCGGCTGAGGGGG	.	40.0	4.0	54.0	0.0	.	154	.	.	Atlas-SNP
EMILIN2	84034	hgsc.bcm.edu	hg19	18	2891118	2891118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EMILIN2	NM_032048	exon4	c.G993T	p.E331D	CATGGAGGGCATG	.	78.0	5.0	88.0	0.0	.	97	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8378411	8378411	+	Missense_Mutation	SNP	G	G	T	rs202020478	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRM	NM_001105244	exon27	c.G3611T	p.R1204L	AATTCCGGGTAAG	.	87.0	4.0	156.0	0.0	.	185	.	G|0.999;A|0.001	Atlas-SNP
PPP4R1	9989	hgsc.bcm.edu	hg19	18	9557375	9557375	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPP4R1	NM_001042388	exon15	c.A2034G	p.K678K	TCGAACTTTCCAC	.	78.0	4.0	94.0	0.0	.	63	.	.	Atlas-SNP
MC2R	4158	hgsc.bcm.edu	hg19	18	13884772	13884772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MC2R	NM_000529	exon2	c.C746A	p.P249H	CAGTAGGGGTTAC	.	94.0	4.0	171.0	0.0	.	78	.	.	Atlas-SNP
ZNF519	162655	hgsc.bcm.edu	hg19	18	14105088	14105088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF519,NS,carcinoma,0,1	ZNF519	NM_145287	exon3	c.G1451T	p.G484V	TTCTCTCCAGTAT	.	75.0	3.0	78.0	0.0	.	53	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19079688	19079688	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GREB1L	NM_001142966	exon22	c.3392-2A>G	.	TCTCACAGGTTCC	.	67.0	4.0	77.0	0.0	.	69	.	.	Atlas-SNP
NPC1	4864	hgsc.bcm.edu	hg19	18	21120466	21120466	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NPC1	NM_000271	exon17	c.C2550A	p.I850I	GACTGCGATGCTG	.	69.0	4.0	114.0	0.0	.	114	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22804712	22804712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF521,NS,carcinoma,0,1	ZNF521	NM_015461	exon4	c.G3170T	p.R1057L	TGGCCCCGCCCTG	.	41.0	3.0	61.0	0.0	.	269	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22806400	22806400	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF521,caecum,carcinoma,-1,1	ZNF521	NM_015461	exon4	c.A1482G	p.E494E	GATGTGTTCCTGA	.	135.0	6.0	183.0	0.0	.	269	.	.	Atlas-SNP
CDH2	1000	hgsc.bcm.edu	hg19	18	25589802	25589802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CDH2	NM_001792	exon5	c.G581T	p.R194L	CTGTACCGCAGTG	.	61.0	4.0	85.0	0.0	.	194	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31326158	31326158	+	Missense_Mutation	SNP	G	G	T	rs117661115	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ASXL3	NM_030632	exon12	c.G6346T	p.A2116S	GCATTCGCGCTAA	.	96.0	4.0	114.0	0.0	.	405	.	G|0.998;A|0.002	Atlas-SNP
NOL4	8715	hgsc.bcm.edu	hg19	18	31523052	31523052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	NOL4,NS,carcinoma,0,1	NOL4	NM_003787	exon9	c.A1519G	p.R507G	GCATCCTCTTGGC	.	65.0	4.0	89.0	0.0	.	139	.	.	Atlas-SNP
MOCOS	55034	hgsc.bcm.edu	hg19	18	33775243	33775243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MOCOS	NM_017947	exon2	c.G166T	p.G56C	CATGCAGGTGCCA	.	99.0	4.0	92.0	0.0	.	84	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44190747	44190747	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LOXHD1	NM_144612	exon6	c.C751T	p.L251L	GGGACAGGAACCA	.	79.0	4.0	83.0	0.0	.	367	.	.	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	hg19	18	45566520	45566520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZBTB7C	NM_001039360	exon2	c.G959T	p.G320V	AGAGGCCCCCCCG	.	57.0	4.0	58.0	0.0	.	73	.	.	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	52895541	52895541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCF4	NM_001243226	exon20	c.A2237G	p.K746R	GACACCTTCTCTT	.	44.0	4.0	62.0	0.0	.	178	.	.	Atlas-SNP
NEDD4L	23327	hgsc.bcm.edu	hg19	18	56002763	56002763	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NEDD4L	NM_001144967	exon13	c.A1119G	p.E373E	TGAGGAACCAACG	.	115.0	5.0	110.0	0.0	.	126	.	.	Atlas-SNP
PMAIP1	5366	hgsc.bcm.edu	hg19	18	57569926	57569926	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PMAIP1	NM_021127	exon2	c.C106T	p.L36L	GACAAACTGAACT	.	79.0	4.0	82.0	0.0	.	1	.	.	Atlas-SNP
KDSR	2531	hgsc.bcm.edu	hg19	18	61034244	61034244	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KDSR	NM_002035	exon1	c.G108A	p.V36V	ACTCACCACCACA	.	134.0	6.0	226.0	0.0	.	17	.	.	Atlas-SNP
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72999514	72999514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TSHZ1	NM_005786	exon2	c.C2017A	p.P673T	ACAGAGCCTCTCA	.	64.0	4.0	85.0	0.0	.	104	.	.	Atlas-SNP
MEX3D	399664	hgsc.bcm.edu	hg19	19	1556545	1556545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MEX3D	NM_203304	exon2	c.G973A	p.E325K	CGTTCTCGGGCAT	.	89.0	4.0	75.0	0.0	.	11	.	.	Atlas-SNP
TCF3	6929	hgsc.bcm.edu	hg19	19	1611812	1611812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TCF3	NM_003200	exon19	c.G1859T	p.R620L	TCTCGCCGTTTCA	.	122.0	5.0	168.0	0.0	.	72	.	.	Atlas-SNP
ADAT3	113179	hgsc.bcm.edu	hg19	19	1912939	1912939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADAT3	NM_138422	exon2	c.A893G	p.Y298C	CTGGCTACGACCT	.	87.0	4.0	53.0	0.0	.	15	.	.	Atlas-SNP
MOB3A	126308	hgsc.bcm.edu	hg19	19	2076903	2076903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_130807	exon4	c.G531A	p.M177I	GGAGCCCATCTGC	.	147.0	6.0	99.0	0.0	.	.	.	.	Atlas-SNP
TMPRSS9	360200	hgsc.bcm.edu	hg19	19	2413833	2413833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TMPRSS9	NM_182973	exon9	c.T1288C	p.W430R	CGTGACTGGATCC	.	96.0	4.0	116.0	0.0	.	79	.	.	Atlas-SNP
UBXN6	80700	hgsc.bcm.edu	hg19	19	4448329	4448329	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UBXN6	NM_025241	exon5	c.G525T	p.V175V	GGTGTCCACACCC	.	65.0	4.0	71.0	0.0	.	27	.	.	Atlas-SNP
DPP9	91039	hgsc.bcm.edu	hg19	19	4700261	4700261	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPP9	NM_139159	exon10	c.A1041G	p.K347K	AGCCAGTTTCAAG	.	94.0	5.0	87.0	0.0	.	59	.	.	Atlas-SNP
FEM1A	55527	hgsc.bcm.edu	hg19	19	4792961	4792961	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FEM1A	NM_018708	exon1	c.C1095A	p.T365T	GATCACCGACCCG	.	53.0	5.0	37.0	0.0	.	41	.	.	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	hg19	19	5208037	5208037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRS	NM_002850	exon37	c.A5674G	p.T1892A	TAAGCGTGATGAA	.	52.0	4.0	63.0	0.0	.	169	.	.	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	hg19	19	5216748	5216748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PTPRS	NM_002850	exon26	c.C4079T	p.P1360L	AACCCCGGCTCCC	.	369.0	69.0	460.0	0.0	.	169	.	.	Atlas-SNP
MLLT1	4298	hgsc.bcm.edu	hg19	19	6222582	6222582	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLLT1	NM_005934	exon6	c.T660C	p.R220R	CTGCTCACGCTCC	.	71.0	5.0	58.0	0.0	.	47	.	.	Atlas-SNP
SLC25A23	79085	hgsc.bcm.edu	hg19	19	6456473	6456473	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC25A23	NM_024103	exon4	c.G441A	p.L147L	ATTTTCCAGCGAA	.	64.0	4.0	103.0	0.0	.	43	.	.	Atlas-SNP
ZNF557	79230	hgsc.bcm.edu	hg19	19	7083073	7083073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF557	NM_001044387	exon8	c.G611T	p.G204V	ACAATGGGGAGAA	.	99.0	4.0	158.0	0.0	.	40	.	.	Atlas-SNP
TRAPPC5	126003	hgsc.bcm.edu	hg19	19	7747234	7747234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TRAPPC5	NM_001042461	exon2	c.T95C	p.L32P	CACTGCTGTTCTC	.	45.0	4.0	83.0	0.0	.	11	.	.	Atlas-SNP
CLEC4M	10332	hgsc.bcm.edu	hg19	19	7830731	7830731	+	Missense_Mutation	SNP	G	G	A	rs76899402	bycluster	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CLEC4M,colon,carcinoma,0,1	CLEC4M	NM_001144908	exon4	c.G422A	p.R141Q	TGACCCGGCTGAA	.	31.0	3.0	19.0	0.0	.	58	.	G|0.250;A|0.750	Atlas-SNP
MAP2K7	5609	hgsc.bcm.edu	hg19	19	7975215	7975215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MAP2K7	NM_145185	exon4	c.G404T	p.W135L	AGGTGTGGAAGAT	.	96.0	4.0	135.0	0.0	.	66	.	.	Atlas-SNP
TIMM44	10469	hgsc.bcm.edu	hg19	19	7999080	7999080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TIMM44	NM_006351	exon5	c.A437G	p.K146R	CCCTCCTTGATTT	.	93.0	4.0	119.0	0.0	.	47	.	.	Atlas-SNP
ELAVL1	1994	hgsc.bcm.edu	hg19	19	8056658	8056658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ELAVL1	NM_001419	exon2	c.G42T	p.R14S	GTCACCCCTGCAG	.	111.0	5.0	150.0	0.0	.	44	.	.	Atlas-SNP
CD320	51293	hgsc.bcm.edu	hg19	19	8370014	8370014	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD320	NM_016579	exon2	c.A169T	p.T57S	ACTTGGTGGGTGG	.	75.0	4.0	67.0	0.0	.	20	.	.	Atlas-SNP
FBXL12	54850	hgsc.bcm.edu	hg19	19	9922014	9922014	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	FBXL12,NS,carcinoma,0,1	FBXL12	NM_017703	exon3	c.C539A	p.S180X	ACCAGCGAGCGCA	.	42.0	2.0	44.0	0.0	.	17	.	.	Atlas-SNP
ECSIT	51295	hgsc.bcm.edu	hg19	19	11625035	11625035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ECSIT	NM_001142464	exon3	c.T98C	p.V33A	CGAGGGACCTGGG	.	65.0	4.0	82.0	0.0	.	32	.	.	Atlas-SNP
MAN2B1	4125	hgsc.bcm.edu	hg19	19	12775761	12775761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	MAN2B1,NS,carcinoma,0,1	MAN2B1	NM_001173498	exon4	c.G475A	p.D159N	CCTCATCGTTCAT	.	29.0	2.0	53.0	0.0	.	91	.	.	Atlas-SNP
GIPC1	10755	hgsc.bcm.edu	hg19	19	14589371	14589371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GIPC1	NM_202468	exon8	c.A859G	p.M287V	CCACCATGGTGGC	.	107.0	6.0	149.0	0.0	.	21	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15281634	15281634	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NOTCH3	NM_000435	exon26	c.C4739A	p.S1580X	ACTACCGAGCTGC	.	58.0	4.0	108.0	0.0	.	340	.	.	Atlas-SNP
WIZ	58525	hgsc.bcm.edu	hg19	19	15533977	15533977	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WIZ	NM_021241	exon8	c.C2295T	p.H765H	CAGGATGTGCCGC	.	55.0	4.0	72.0	0.0	.	152	.	.	Atlas-SNP
EPS15L1	58513	hgsc.bcm.edu	hg19	19	16488025	16488025	+	Missense_Mutation	SNP	G	G	A	rs369284918	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EPS15L1	NM_021235	exon22	c.C2288T	p.A763V	AATCCTGCCCCTC	.	89.0	4.0	97.0	0.0	.	81	.	.	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17785490	17785490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UNC13A	NM_001080421	exon3	c.C128A	p.P43H	CAGCTGGGCTGGC	.	75.0	4.0	90.0	0.0	.	299	.	.	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17785532	17785532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UNC13A	NM_001080421	exon3	c.A86G	p.Q29R	ACATTCTGCACTT	.	87.0	4.0	131.0	0.0	.	299	.	.	Atlas-SNP
IL12RB1	3594	hgsc.bcm.edu	hg19	19	18183013	18183013	+	Silent	SNP	C	C	A	rs144647048	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IL12RB1	NM_153701	exon9	c.G930T	p.S310S	AGCACCCGAGAGA	.	95.0	4.0	118.0	0.0	.	92	.	C|1.000;T|0.000	Atlas-SNP
ZNF90	7643	hgsc.bcm.edu	hg19	19	20228952	20228952	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF90	NM_007138	exon4	c.G589T	p.G197X	CATACTGGAGAGA	.	58.0	4.0	86.0	0.0	.	93	.	.	Atlas-SNP
ZNF85	7639	hgsc.bcm.edu	hg19	19	21132473	21132473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF85	NM_001256171	exon5	c.C1243A	p.L415I	TCACACCTTACTA	.	72.0	4.0	82.0	0.0	.	72	.	.	Atlas-SNP
ZNF431	170959	hgsc.bcm.edu	hg19	19	21366793	21366793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF431	NM_133473	exon5	c.T1687C	p.W563R	TCATACTGGAGAG	.	99.0	4.0	157.0	0.0	.	71	.	.	Atlas-SNP
ZNF708	7562	hgsc.bcm.edu	hg19	19	21476562	21476562	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.,1	ZNF708	NM_021269	exon4	c.C1206A	p.T402T	GGACTTGGTAAAG	.	59.0	3.0	77.0	0.0	.	66	.	.	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	hg19	19	21712459	21712459	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF429	NM_001001415	exon2	c.4-1G>T	.	GTTTCAGGGACCA	.	59.0	4.0	109.0	0.0	.	338	.	.	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	hg19	19	21720450	21720450	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF429,colon,carcinoma,0,2	ZNF429	NM_001001415	exon4	c.C1595G	p.T532S	TTCATACTGGAGA	.	29.0	2.0	49.0	2.0	.	338	.	.	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	hg19	19	21720666	21720666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZNF429,caecum,carcinoma,+1,1	ZNF429	NM_001001415	exon4	c.G1811T	p.R604L	TTAATCGGTCCTC	.	74.0	3.0	82.0	0.0	.	338	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22155050	22155050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF208	NM_007153	exon4	c.T2786C	p.L929S	ACTGACAACCAGC	.	127.0	6.0	179.0	0.0	.	817	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23544210	23544210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF91	NM_003430	exon4	c.G1571A	p.G524D	GCTTTGCCACATT	.	89.0	4.0	77.0	0.0	.	349	.	.	Atlas-SNP
ZNF675	171392	hgsc.bcm.edu	hg19	19	23836432	23836432	+	Silent	SNP	G	G	T	rs199957959	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF675	NM_138330	exon4	c.C1303A	p.R435R	AGGATCGGTTAAA	.	33.0	4.0	54.0	0.0	.	88	.	G|0.999;A|0.001	Atlas-SNP
DPY19L3	147991	hgsc.bcm.edu	hg19	19	32968497	32968497	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DPY19L3	NM_001172774	exon17	c.G1767T	p.T589T	GTGCACGGGAAGG	.	80.0	5.0	120.0	0.0	.	70	.	.	Atlas-SNP
WDR88	126248	hgsc.bcm.edu	hg19	19	33647426	33647426	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR88	NM_173479	exon7	c.T975C	p.S325S	TGTCAGTTCCTGT	.	100.0	4.0	93.0	0.0	.	50	.	.	Atlas-SNP
CD22	933	hgsc.bcm.edu	hg19	19	35832318	35832318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CD22	NM_001185100	exon8	c.T1580C	p.L527P	TCAGCCTCCAATG	.	64.0	4.0	33.0	0.0	.	129	.	.	Atlas-SNP
ATP4A	495	hgsc.bcm.edu	hg19	19	36051450	36051450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ATP4A	NM_000704	exon6	c.T602C	p.L201P	TCCACCAGGTCGC	.	48.0	4.0	65.0	0.0	.	123	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36229093	36229093	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MLL4	NM_014727	exon36	c.7872+1G>T	.	GGGAAGGTGGGCT	.	46.0	16.0	123.0	0.0	.	229	.	.	Atlas-SNP
POLR2I	5438	hgsc.bcm.edu	hg19	19	36605106	36605106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	POLR2I	NM_006233	exon4	c.C236A	p.P79Q	GTCCGCGGCAACG	.	123.0	7.0	129.0	0.0	.	10	.	.	Atlas-SNP
ZNF565	147929	hgsc.bcm.edu	hg19	19	36685225	36685225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF565	NM_001042474	exon4	c.T142C	p.S48P	AAATGGAGAGTCC	.	73.0	4.0	104.0	0.0	.	46	.	.	Atlas-SNP
ZNF345	25850	hgsc.bcm.edu	hg19	19	37368101	37368101	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF345	NM_001242476	exon4	c.T369C	p.C123C	AGAATGTGGGAAG	.	99.0	4.0	98.0	0.0	.	68	.	.	Atlas-SNP
ZNF585B	92285	hgsc.bcm.edu	hg19	19	37677107	37677107	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF585B	NM_152279	exon5	c.G1332A	p.G444G	CAATTTCCCACAG	.	198.0	61.0	243.0	0.0	.	91	.	.	Atlas-SNP
RASGRP4	115727	hgsc.bcm.edu	hg19	19	38903605	38903605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RASGRP4	NM_170604	exon12	c.G1501A	p.A501T	GGCAGGCGAAGGG	.	42.0	4.0	81.0	0.0	.	54	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38959769	38959769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RYR1	NM_001042723	exon26	c.A3545G	p.E1182G	AGATTGAGATTGG	.	86.0	4.0	96.0	0.0	.	708	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38976759	38976759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	RYR1,NS,carcinoma,0,1	RYR1	NM_001042723	exon34	c.G5464T	p.G1822C	CGCGACGGTGGGC	.	34.0	2.0	57.0	0.0	.	708	.	.	Atlas-SNP
ACTN4	81	hgsc.bcm.edu	hg19	19	39214663	39214663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ACTN4	NM_004924	exon14	c.C1638A	p.S546R	GGAGAGCGCCATG	.	94.0	4.0	145.0	0.0	.	69	.	.	Atlas-SNP
HNRNPL	3191	hgsc.bcm.edu	hg19	19	39336338	39336338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HNRNPL	NM_001533	exon4	c.T662C	p.V221A	CTCTGGACAGGGC	.	66.0	4.0	79.0	0.0	.	67	.	.	Atlas-SNP
PLEKHG2	64857	hgsc.bcm.edu	hg19	19	39913584	39913584	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLEKHG2	NM_022835	exon18	c.C1890T	p.P630P	CATTCCCTGCCTT	.	94.0	4.0	141.0	0.0	.	329	.	.	Atlas-SNP
AKT2	208	hgsc.bcm.edu	hg19	19	40743931	40743931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AKT2	NM_001626	exon9	c.T776C	p.I259T	GAGACAATCTCTG	.	82.0	4.0	128.0	0.0	.	53	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41038617	41038617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SPTBN4,NS,carcinoma,0,1	SPTBN4	NM_020971	exon19	c.G4034A	p.R1345Q	GGCTCCGGCACCA	.	69.0	3.0	118.0	0.0	.	213	.	.	Atlas-SNP
ADCK4	79934	hgsc.bcm.edu	hg19	19	41206291	41206291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ADCK4	NM_024876	exon11	c.G959T	p.R320L	AGCACCCGTGTCG	.	77.0	29.0	109.0	0.0	.	92	.	.	Atlas-SNP
EGLN2	112398	hgsc.bcm.edu	hg19	19	41306565	41306565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EGLN2	NM_053046	exon2	c.G88A	p.G30S	GAGCCTGGCCGGG	.	96.0	4.0	108.0	0.0	.	31	.	.	Atlas-SNP
BCKDHA	593	hgsc.bcm.edu	hg19	19	41916689	41916689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	BCKDHA,colon,carcinoma,0,1	BCKDHA	NM_000709	exon2	c.G256A	p.G86S	CGGCAAGGCCAGA	.	95.0	4.0	117.0	0.0	.	36	.	.	Atlas-SNP
PSG9	5678	hgsc.bcm.edu	hg19	19	43766182	43766182	+	Missense_Mutation	SNP	C	C	A	rs149244305	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PSG9,arm,malignant_melanoma,0,1	PSG9	NM_002784	exon3	c.G539T	p.W180L	ATCCACCATAGGT	.	122.0	5.0	242.0	0.0	.	77	.	.	Atlas-SNP
PHLDB3	653583	hgsc.bcm.edu	hg19	19	43998856	43998856	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHLDB3	NM_198850	exon9	c.C1147T	p.Q383X	GCACCTGCAGGGA	.	96.0	4.0	157.0	0.0	.	30	.	.	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	hg19	19	44934658	44934658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF229	NM_014518	exon6	c.C298A	p.H100N	CTTTGTGTGAAAA	.	95.0	4.0	118.0	0.0	.	123	.	.	Atlas-SNP
CLPTM1	1209	hgsc.bcm.edu	hg19	19	45489769	45489769	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CLPTM1	NM_001294	exon7	c.C729A	p.T243T	CATCACCATCAAC	.	72.0	4.0	93.0	0.0	.	109	.	.	Atlas-SNP
KLC3	147700	hgsc.bcm.edu	hg19	19	45850019	45850019	+	Missense_Mutation	SNP	C	C	A	rs76874841	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLC3	NM_177417	exon3	c.C476A	p.P159Q	ACCCACCGGCGGA	.	65.0	4.0	102.0	0.0	.	37	.	C|0.998;G|0.002	Atlas-SNP
ERCC2	2068	hgsc.bcm.edu	hg19	19	45871940	45871940	+	Missense_Mutation	SNP	G	G	T	rs142462393	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERCC2	NM_000400	exon5	c.C308A	p.P103Q	AGAAACGGCAGCT	.	86.0	4.0	125.0	0.0	.	78	.	G|1.000;A|0.000	Atlas-SNP
ERCC1	2067	hgsc.bcm.edu	hg19	19	45920105	45920105	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ERCC1	NM_001983	exon6	c.C576A	p.A192A	GCAGTCGGCCAGG	.	77.0	4.0	111.0	0.0	.	46	.	.	Atlas-SNP
PPM1N	147699	hgsc.bcm.edu	hg19	19	46003767	46003767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPM1N	NM_001080401	exon3	c.C1111A	p.L371M	AGGACTCTGGCCT	.	91.0	4.0	108.0	0.0	.	25	.	.	Atlas-SNP
MEIS3	56917	hgsc.bcm.edu	hg19	19	47920594	47920594	+	Missense_Mutation	SNP	G	G	T	rs200901098	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MEIS3	NM_001009813	exon2	c.C26A	p.P9Q	TAGTGCGGCAGCT	.	99.0	4.0	121.0	0.0	.	40	.	G|1.000;A|0.000	Atlas-SNP
GLTSCR2	29997	hgsc.bcm.edu	hg19	19	48259071	48259071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GLTSCR2	NM_015710	exon10	c.A1288G	p.T430A	CTCAGGACCCTGA	.	94.0	4.0	134.0	0.0	.	45	.	.	Atlas-SNP
TPRX1	284355	hgsc.bcm.edu	hg19	19	48305658	48305658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	TPRX1,caecum,carcinoma,0,1	TPRX1	NM_198479	exon2	c.C610T	p.P204S	GGCCTGGGATCGG	.	86.0	5.0	97.0	1.0	.	46	.	.	Atlas-SNP
PLA2G4C	8605	hgsc.bcm.edu	hg19	19	48609797	48609797	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLA2G4C	NM_001159322	exon2	c.C51A	p.T17T	CACTGCGGTCAGA	.	121.0	5.0	200.0	0.0	.	76	.	.	Atlas-SNP
PPFIA3	8541	hgsc.bcm.edu	hg19	19	49632641	49632641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PPFIA3	NM_003660	exon5	c.G512T	p.R171L	AGGTCCGGGAGCG	.	113.0	5.0	133.0	0.0	.	71	.	.	Atlas-SNP
RPL13A	23521	hgsc.bcm.edu	hg19	19	49994320	49994320	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RPL13A	NM_012423	exon6	c.T366C	p.A122A	TCCTGCTGCCCTC	.	85.0	4.0	100.0	0.0	.	13	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50792838	50792838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH14	NM_001145809	exon35	c.A4898G	p.Q1633R	AGACTCAGCATGA	.	70.0	4.0	82.0	0.0	.	261	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50794172	50794172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MYH14	NM_001145809	exon36	c.A4994G	p.E1665G	GGGATGAGGAGCG	.	99.0	4.0	151.0	0.0	.	261	.	.	Atlas-SNP
KLK7	5650	hgsc.bcm.edu	hg19	19	51485084	51485084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KLK7	NM_139277	exon3	c.C160T	p.H54Y	CGCAGTGGAGCTG	.	54.0	4.0	136.0	0.0	.	40	.	.	Atlas-SNP
KLK9	284366	hgsc.bcm.edu	hg19	19	51506518	51506518	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	KLK9,colon,carcinoma,0,1	KLK9	NM_012315	exon6	c.604-2A>G	.	TCACCCTGTACGC	.	35.0	2.0	55.0	0.0	.	27	.	.	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	hg19	19	52569527	52569527	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF841	NM_001136499	exon7	c.C1608A	p.T536T	CTCTCCGGTATGA	.	79.0	4.0	74.0	0.0	.	183	.	.	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	hg19	19	52570470	52570470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF841	NM_001136499	exon7	c.C665A	p.P222Q	TGAAGTGGTGAAG	.	76.0	4.0	103.0	0.0	.	183	.	.	Atlas-SNP
ZNF460	10794	hgsc.bcm.edu	hg19	19	57802158	57802158	+	Silent	SNP	A	A	G	rs368592252		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF460	NM_006635	exon3	c.A249G	p.G83G	ACAGGGAGTCCCA	.	80.0	4.0	111.0	0.0	.	59	.	.	Atlas-SNP
ZNF587B	100293516	hgsc.bcm.edu	hg19	19	58352852	58352852	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_001204818	exon3	c.T810C	p.Y270Y	ACCTTATGAATGT	.	97.0	4.0	125.0	0.0	.	.	.	.	Atlas-SNP
ZNF418	147686	hgsc.bcm.edu	hg19	19	58438656	58438656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF418	NM_133460	exon4	c.A893G	p.K298R	CTGCCCTTATGAC	.	100.0	4.0	117.0	0.0	.	76	.	.	Atlas-SNP
ZSCAN1	284312	hgsc.bcm.edu	hg19	19	58565111	58565111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	ZSCAN1,right_upper_lobe,carcinoma,0,1	ZSCAN1	NM_182572	exon6	c.T919C	p.F307L	ACCCACTTCATCG	.	73.0	3.0	88.0	0.0	.	102	.	.	Atlas-SNP
ZNF132	7691	hgsc.bcm.edu	hg19	19	58945140	58945140	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF132	NM_003433	exon3	c.T1671C	p.T557T	AATGAGAGTGGAG	.	91.0	4.0	166.0	0.0	.	56	.	.	Atlas-SNP
ZNF446	55663	hgsc.bcm.edu	hg19	19	58988926	58988926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF446	NM_017908	exon2	c.G341T	p.W114L	TGGGCTGGGTGAG	.	90.0	4.0	105.0	0.0	.	22	.	.	Atlas-SNP
RBCK1	10616	hgsc.bcm.edu	hg19	20	400215	400215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	RBCK1	NM_031229	exon6	c.G596A	p.C199Y	GGCAGTGCCCCGG	.	61.0	4.0	95.0	0.0	.	38	.	.	Atlas-SNP
C20orf141	128653	hgsc.bcm.edu	hg19	20	2796266	2796266	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C20orf141	NM_080739	exon2	c.G343T	p.E115X	CAGCAGGAGGCTC	.	90.0	4.0	120.0	0.0	.	21	.	.	Atlas-SNP
TASP1	55617	hgsc.bcm.edu	hg19	20	13371068	13371068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TASP1	NM_017714	exon14	c.T1202C	p.V401A	CCTGCCACCGCAC	.	65.0	4.0	77.0	0.0	.	52	.	.	Atlas-SNP
PCSK2	5126	hgsc.bcm.edu	hg19	20	17462588	17462588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PCSK2	NM_002594	exon12	c.C1790T	p.A597V	AGAGTGCCCCGTA	.	75.0	4.0	126.0	0.0	.	112	.	.	Atlas-SNP
C20orf26	26074	hgsc.bcm.edu	hg19	20	20055874	20055874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	C20orf26	NM_015585	exon5	c.T413C	p.L138P	TATTTCTCATCGT	.	140.0	42.0	218.0	0.0	.	188	.	.	Atlas-SNP
GZF1	64412	hgsc.bcm.edu	hg19	20	23345335	23345335	+	Silent	SNP	G	G	T	rs376361468	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GZF1	NM_022482	exon1	c.G315T	p.R105R	AGATCGGGTGCAG	.	93.0	4.0	123.0	0.0	.	61	.	.	Atlas-SNP
NINL	22981	hgsc.bcm.edu	hg19	20	25498459	25498459	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NINL	NM_025176	exon3	c.T207C	p.G69G	CACAAAACCTTCC	.	99.0	4.0	147.0	0.0	.	148	.	.	Atlas-SNP
ZNF337	26152	hgsc.bcm.edu	hg19	20	25656557	25656557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF337	NM_015655	exon5	c.A1367G	p.E456G	TTCTCCTCTGAGT	.	96.0	4.0	136.0	0.0	.	65	.	.	Atlas-SNP
TTLL9	164395	hgsc.bcm.edu	hg19	20	30521650	30521650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TTLL9	NM_001008409	exon11	c.C796A	p.H266N	GACTACCACCCAA	.	98.0	4.0	123.0	0.0	.	95	.	.	Atlas-SNP
TM9SF4	9777	hgsc.bcm.edu	hg19	20	30734649	30734649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TM9SF4	NM_014742	exon9	c.G945T	p.E315D	CAAGGAGGATGAC	.	95.0	5.0	108.0	0.0	.	65	.	.	Atlas-SNP
DNMT3B	1789	hgsc.bcm.edu	hg19	20	31367950	31367950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DNMT3B	NM_175850	exon1	c.T29C	p.L10S	CAAGCTTGGTGAG	.	66.0	4.0	84.0	0.0	.	196	.	.	Atlas-SNP
BPIFB1	92747	hgsc.bcm.edu	hg19	20	31889200	31889200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_033197	exon9	c.G909A	p.M303I	ATTCATGGTCCTG	.	58.0	4.0	75.0	0.0	.	.	.	.	Atlas-SNP
ZNF341	84905	hgsc.bcm.edu	hg19	20	32328755	32328755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF341	NM_032819	exon2	c.C79A	p.Q27K	GATGGCCAAGGAG	.	55.0	4.0	105.0	0.0	.	73	.	.	Atlas-SNP
UQCC	55245	hgsc.bcm.edu	hg19	20	33981955	33981955	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	UQCC	NM_018244	exon2	c.A69G	p.R23R	TATCAATCGGCTG	.	98.0	4.0	132.0	0.0	.	41	.	.	Atlas-SNP
TGM2	7052	hgsc.bcm.edu	hg19	20	36766769	36766769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TGM2	NM_198951	exon10	c.A1361G	p.E454G	AAGGCCTCCCTCT	.	94.0	4.0	127.0	0.0	.	88	.	.	Atlas-SNP
LPIN3	64900	hgsc.bcm.edu	hg19	20	39986061	39986061	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LPIN3	NM_022896	exon16	c.C2013A	p.I671I	GGGCATCACCAGT	.	65.0	5.0	66.0	0.0	.	69	.	.	Atlas-SNP
SNX21	90203	hgsc.bcm.edu	hg19	20	44469556	44469556	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SNX21,colon,carcinoma,0,1	SNX21	NM_033421	exon4	c.G726T	p.P242P	GCTGCCGGAGCTG	.	90.0	5.0	99.0	2.0	.	23	.	.	Atlas-SNP
SLC12A5	57468	hgsc.bcm.edu	hg19	20	44676618	44676618	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLC12A5	NM_001134771	exon16	c.1977-2A>G	.	GCTCCCAGGGCAG	.	42.0	4.0	60.0	0.0	.	181	.	.	Atlas-SNP
OCSTAMP	128506	hgsc.bcm.edu	hg19	20	45174433	45174433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	OCSTAMP	NM_080721	exon2	c.T580C	p.S194P	AGGCAGAGCCATT	.	92.0	5.0	108.0	0.0	.	34	.	.	Atlas-SNP
PTPN1	5770	hgsc.bcm.edu	hg19	20	49197898	49197898	+	Silent	SNP	C	C	A	rs150584289	bycluster;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	PTPN1,NS,carcinoma,0,1	PTPN1	NM_002827	exon9	c.C1185A	p.P395P	ACTGCCCGAGAAG	.	68.0	3.0	142.0	0.0	.	36	.	C|1.000;T|0.000	Atlas-SNP
SYCP2	10388	hgsc.bcm.edu	hg19	20	58468228	58468228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SYCP2	NM_014258	exon21	c.T1762C	p.S588P	CCTGTGAATCTGG	.	84.0	4.0	87.0	0.0	.	204	.	.	Atlas-SNP
GRIK1	2897	hgsc.bcm.edu	hg19	21	30971254	30971254	+	Silent	SNP	G	G	T	rs113829116	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIK1	NM_175611	exon8	c.C1102A	p.R368R	CCCACCGGGCCTG	.	45.0	4.0	48.0	0.0	.	293	.	G|1.000;A|0.000	Atlas-SNP
TIAM1	7074	hgsc.bcm.edu	hg19	21	32639202	32639202	+	Silent	SNP	G	G	T	rs139712298	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	TIAM1	NM_003253	exon5	c.C87A	p.S29S	GCGCAGGGAGCGG	.	41.0	4.0	87.0	0.0	.	522	.	G|0.999;A|0.001	Atlas-SNP
SCAF4	57466	hgsc.bcm.edu	hg19	21	33068944	33068944	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SCAF4	NM_020706	exon8	c.C897A	p.T299T	GGTGGCGGTGGGT	.	114.0	5.0	147.0	0.0	.	142	.	.	Atlas-SNP
SLC5A3	6526	hgsc.bcm.edu	hg19	21	35469094	35469094	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SLC5A3,rectum,NS,0,1	SLC5A3	NM_006933	exon2	c.A1597T	p.T533S	CTTCTCACACCAC	.	100.0	5.0	146.0	0.0	.	52	.	.	Atlas-SNP
PSMG1	8624	hgsc.bcm.edu	hg19	21	40553799	40553799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PSMG1	NM_203433	exon2	c.T140C	p.V47A	AGCCGCACTTCCC	.	89.0	6.0	94.0	0.0	.	11	.	.	Atlas-SNP
HMGN1	3150	hgsc.bcm.edu	hg19	21	40717157	40717157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	HMGN1	NM_004965	exon5	c.G170T	p.G57V	TTTGCTCCCCTTT	.	118.0	5.0	151.0	0.0	.	8	.	.	Atlas-SNP
KRTAP10-7	386675	hgsc.bcm.edu	hg19	21	46020985	46020985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KRTAP10-7	NM_198689	exon2	c.C449A	p.P150H	CCTCCCCCTGCCA	.	437.0	120.0	630.0	0.0	.	41	.	.	Atlas-SNP
LSS	4047	hgsc.bcm.edu	hg19	21	47616149	47616149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LSS	NM_001001438	exon18	c.G1703T	p.R568L	TGCCGCCGACAGA	.	41.0	4.0	72.0	0.0	.	50	.	.	Atlas-SNP
LSS	4047	hgsc.bcm.edu	hg19	21	47647541	47647541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	LSS	NM_001145436	exon3	c.A244G	p.T82A	AAAATGTCATCCC	.	89.0	4.0	148.0	0.0	.	50	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47680812	47680812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MCM3AP	NM_003906	exon15	c.A3476G	p.Q1159R	CTCTCTTGTTTCA	.	54.0	4.0	122.0	0.0	.	146	.	.	Atlas-SNP
DGCR14	8220	hgsc.bcm.edu	hg19	22	19126802	19126802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DGCR14	NM_022719	exon6	c.T692C	p.V231A	TCAGGGACACCTG	.	78.0	4.0	61.0	0.0	.	43	.	.	Atlas-SNP
CCDC116	164592	hgsc.bcm.edu	hg19	22	21989356	21989356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC116	NM_152612	exon4	c.T1004C	p.L335P	GTCCTCTGTTCCC	.	60.0	6.0	103.0	0.0	.	56	.	.	Atlas-SNP
SDF2L1	23753	hgsc.bcm.edu	hg19	22	21998435	21998435	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SDF2L1	NM_022044	exon3	c.G637T	p.E213X	AGTGTGGAGCCCT	.	87.0	4.0	110.0	0.0	.	5	.	.	Atlas-SNP
PIWIL3	440822	hgsc.bcm.edu	hg19	22	25153957	25153957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PIWIL3	NM_001008496	exon4	c.G273T	p.Q91H	TCTCTCCTGCAAG	.	122.0	5.0	156.0	0.0	.	115	.	.	Atlas-SNP
SGSM1	129049	hgsc.bcm.edu	hg19	22	25280066	25280066	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGSM1	NM_133454	exon16	c.A1707G	p.S569S	CCTATCAGCCCTG	.	68.0	4.0	72.0	0.0	.	150	.	.	Atlas-SNP
TTC28	23331	hgsc.bcm.edu	hg19	22	28389367	28389367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.,1	TTC28	NM_001145418	exon18	c.C5384T	p.P1795L	CTGGTTGGGGGGT	.	59.0	3.0	62.0	0.0	.	84	.	.	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	hg19	22	29445350	29445350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNRF3	NM_001206998	exon8	c.T1181C	p.V394A	ACCCCGTCACCTT	.	101.0	5.0	80.0	0.0	.	75	.	.	Atlas-SNP
GAS2L1	10634	hgsc.bcm.edu	hg19	22	29706428	29706428	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GAS2L1	NM_152237	exon3	c.634-1G>T	.	GCCTCAGGTGAGG	.	173.0	72.0	129.0	0.0	.	54	.	.	Atlas-SNP
PRR14L	253143	hgsc.bcm.edu	hg19	22	32084215	32084215	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PRR14L	NM_173566	exon9	c.6108-2A>G	.	TTAACCTGAAAAG	.	80.0	4.0	100.0	0.0	.	198	.	.	Atlas-SNP
DEPDC5	9681	hgsc.bcm.edu	hg19	22	32275652	32275652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	DEPDC5,NS,carcinoma,0,1	DEPDC5	NM_001242896	exon38	c.T3947C	p.L1316P	CCTGGCTGCCTAG	.	46.0	4.0	66.0	1.0	.	266	.	.	Atlas-SNP
PICK1	9463	hgsc.bcm.edu	hg19	22	38465060	38465060	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PICK1	NM_012407	exon6	c.C370A	p.R124R	AAGCACCGGCTGG	.	92.0	4.0	111.0	0.0	.	30	.	.	Atlas-SNP
PLA2G6	8398	hgsc.bcm.edu	hg19	22	38536052	38536052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLA2G6	NM_003560	exon5	c.G734T	p.R245L	TTGCACCGAGCAT	.	73.0	4.0	73.0	0.0	.	54	.	.	Atlas-SNP
DDX17	10521	hgsc.bcm.edu	hg19	22	38897259	38897259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DDX17	NM_006386	exon2	c.T314C	p.L105P	GGGGGAAGGCCAC	.	73.0	4.0	63.0	0.0	.	73	.	.	Atlas-SNP
CBX7	23492	hgsc.bcm.edu	hg19	22	39530449	39530449	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	CBX7,caecum,carcinoma,0,1	CBX7	NM_175709	exon5	c.G555A	p.A185A	GCCAGCCGCCTGC	.	56.0	20.0	88.0	0.0	.	18	.	.	Atlas-SNP
RPL3	6122	hgsc.bcm.edu	hg19	22	39711541	39711541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	RPL3,NS,carcinoma,0,1	RPL3	NM_000967	exon5	c.G521A	p.R174H	TTCTGGCGCAGAG	.	45.0	2.0	74.0	0.0	.	29	.	.	Atlas-SNP
FAM83F	113828	hgsc.bcm.edu	hg19	22	40415332	40415332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	FAM83F,NS,carcinoma,0,2	FAM83F	NM_138435	exon2	c.G650A	p.R217Q	ACTTCCGGATTCG	.	74.0	3.0	110.0	0.0	.	29	.	.	Atlas-SNP
SGSM3	27352	hgsc.bcm.edu	hg19	22	40803030	40803030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SGSM3	NM_015705	exon11	c.C1195A	p.R399S	GTTCGCCGCAGGA	.	70.0	4.0	108.0	0.0	.	48	.	.	Atlas-SNP
SGSM3	27352	hgsc.bcm.edu	hg19	22	40803251	40803251	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	SGSM3,NS,carcinoma,0,1	SGSM3	NM_015705	exon12	c.G1287T	p.T429T	GCAGACGGAACTG	.	94.0	6.0	113.0	0.0	.	48	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41573037	41573037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	EP300	NM_001429	exon31	c.A5322T	p.K1774N	ACGGAAAACCAAT	.	85.0	6.0	78.0	0.0	.	367	.	.	Atlas-SNP
PARVB	29780	hgsc.bcm.edu	hg19	22	44564512	44564512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PARVB	NM_001003828	exon14	c.T1148C	p.L383P	CCACCCTGAGGGT	.	94.0	4.0	177.0	0.0	.	44	.	.	Atlas-SNP
WNT7B	7477	hgsc.bcm.edu	hg19	22	46319021	46319021	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WNT7B	NM_058238	exon4	c.A765G	p.K255K	CAGCTGTTTGATG	.	86.0	4.0	149.0	0.0	.	45	.	.	Atlas-SNP
GTSE1	51512	hgsc.bcm.edu	hg19	22	46704834	46704834	+	Silent	SNP	G	G	T	rs200502529	alternate_allele	TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GTSE1	NM_016426	exon4	c.G756T	p.A252A	GGCTGCGGAGAAG	.	64.0	4.0	112.0	0.0	.	100	.	G|0.999;A|0.001	Atlas-SNP
IL17REL	400935	hgsc.bcm.edu	hg19	22	50438927	50438927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IL17REL	NM_001001694	exon6	c.A314G	p.D105G	CTCTGGTCCAGCT	.	85.0	4.0	91.0	0.0	.	21	.	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	hg19	22	50720691	50720691	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB2	NM_012401	exon19	c.G3039A	p.R1013R	GGCAAACCTCTGG	.	90.0	20.0	122.0	0.0	.	172	.	.	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51143419	51143419	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SHANK3	NM_033517	exon16	c.G1882T	p.G628X	AAGGTCGGACACA	.	72.0	5.0	117.0	0.0	.	96	.	.	Atlas-SNP
KAL1	3730	hgsc.bcm.edu	hg19	X	8565289	8565289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KAL1	NM_000216	exon4	c.C327A	p.F109L	CTTGGGGAAGAGA	.	94.0	4.0	156.0	0.0	.	78	.	.	Atlas-SNP
MID1	4281	hgsc.bcm.edu	hg19	X	10450648	10450648	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	MID1	NM_001193278	exon5	c.G1038T	p.L346L	CTGAGCCAGTTTG	.	21.0	4.0	43.0	0.0	.	72	.	.	Atlas-SNP
BMX	660	hgsc.bcm.edu	hg19	X	15534284	15534284	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BMX	NM_001721	exon5	c.C375T	p.F125F	GTTCTTCGTGGAC	.	89.0	4.0	177.0	0.0	.	73	.	.	Atlas-SNP
CA5B	11238	hgsc.bcm.edu	hg19	X	15768181	15768181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CA5B	NM_007220	exon2	c.A35G	p.Q12R	TTCTTCAAGCCTC	.	87.0	4.0	169.0	0.0	.	23	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32490308	32490308	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DMD	NM_004006	exon22	c.C2922A	p.I974I	CTCCATGATTTCA	.	156.0	45.0	216.0	0.0	.	2127	.	.	Atlas-SNP
CXorf22	170063	hgsc.bcm.edu	hg19	X	35989740	35989740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CXorf22	NM_152632	exon12	c.T2008G	p.L670V	ATAGGCTTAGAGC	.	78.0	25.0	131.0	0.0	.	272	.	.	Atlas-SNP
CYBB	1536	hgsc.bcm.edu	hg19	X	37665717	37665717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CYBB	NM_000397	exon11	c.G1392T	p.Q464H	GAGCCAGATGCAG	.	72.0	4.0	103.0	0.0	.	62	.	.	Atlas-SNP
SRPX	8406	hgsc.bcm.edu	hg19	X	38013812	38013812	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SRPX	NM_006307	exon9	c.C1114A	p.R372R	TGTGTCGAAGATC	.	81.0	4.0	79.0	0.0	.	53	.	.	Atlas-SNP
BCOR	54880	hgsc.bcm.edu	hg19	X	39934379	39934379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BCOR	NM_001123385	exon4	c.C220A	p.R74S	CAGTGCGGTCCAT	.	91.0	6.0	98.0	0.0	.	351	.	.	Atlas-SNP
CHST7	56548	hgsc.bcm.edu	hg19	X	46433646	46433646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CHST7	NM_019886	exon1	c.G280T	p.G94W	GCTGTCGGGGAGG	.	62.0	5.0	100.0	0.0	.	23	.	.	Atlas-SNP
GRIPAP1	56850	hgsc.bcm.edu	hg19	X	48855662	48855662	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GRIPAP1	NM_020137	exon3	c.C159T	p.S53S	AGCTTTGCTGAAC	.	137.0	6.0	175.0	0.0	.	128	.	.	Atlas-SNP
CCDC22	28952	hgsc.bcm.edu	hg19	X	49105132	49105132	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	CCDC22	NM_014008	exon12	c.G1368T	p.L456L	AGAACTGCACCAG	.	174.0	35.0	260.0	0.0	.	69	.	.	Atlas-SNP
FOXR2	139628	hgsc.bcm.edu	hg19	X	55650629	55650629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FOXR2	NM_198451	exon1	c.C485A	p.P162Q	AGGAACCAGACGA	.	86.0	5.0	154.0	0.0	.	42	.	.	Atlas-SNP
FAM155B	27112	hgsc.bcm.edu	hg19	X	68725240	68725240	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	FAM155B	NM_015686	exon1	c.C115A	p.R39R	TCCGAGCGGGCGC	.	55.0	4.0	54.0	0.0	.	44	.	.	Atlas-SNP
ARR3	407	hgsc.bcm.edu	hg19	X	69496000	69496000	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ARR3	NM_004312	exon6	c.C214T	p.R72X	ACGTTCCGAAAAG	.	99.0	4.0	166.0	0.0	.	41	.	.	Atlas-SNP
SNX12	29934	hgsc.bcm.edu	hg19	X	70282707	70282707	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SNX12	NM_001256185	exon3	c.C258T	p.S86S	TACCTTGCTATCT	.	87.0	19.0	128.0	0.0	.	18	.	.	Atlas-SNP
PHKA1	5255	hgsc.bcm.edu	hg19	X	71915637	71915637	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PHKA1	NM_001172436	exon4	c.G375A	p.V125V	ATCACCCACTACA	.	886.0	223.0	1274.0	1.0	.	129	.	.	Atlas-SNP
KIAA2022	340533	hgsc.bcm.edu	hg19	X	73960460	73960460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	KIAA2022	NM_001008537	exon3	c.G3932T	p.R1311L	AATTCCCGTTGGT	.	77.0	5.0	127.0	0.0	.	262	.	.	Atlas-SNP
DRP2	1821	hgsc.bcm.edu	hg19	X	100513518	100513518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	DRP2	NM_001939	exon22	c.A2611G	p.R871G	CGTCTGAGGGAGC	.	97.0	4.0	92.0	0.0	.	98	.	.	Atlas-SNP
BHLHB9	80823	hgsc.bcm.edu	hg19	X	102004395	102004395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BHLHB9	NM_001142530	exon2	c.G472T	p.D158Y	GGGGCCGATTGCA	.	110.0	5.0	145.0	0.0	.	60	.	.	Atlas-SNP
IRS4	8471	hgsc.bcm.edu	hg19	X	107979422	107979422	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	IRS4	NM_003604	exon1	c.G153T	p.P51P	GGCTCCCGGACAA	.	121.0	6.0	173.0	0.0	.	253	.	.	Atlas-SNP
ALG13	79868	hgsc.bcm.edu	hg19	X	110980011	110980011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ALG13	NM_001099922	exon23	c.G2599T	p.G867C	TCTAACGGTGCAG	.	166.0	7.0	262.0	0.0	.	230	.	.	Atlas-SNP
GLUD2	2747	hgsc.bcm.edu	hg19	X	120181981	120181981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	GLUD2	NM_012084	exon1	c.G443A	p.G148E	GCAAGGGAGGTAT	.	147.0	38.0	246.0	0.0	.	89	.	.	Atlas-SNP
ZIC3	7547	hgsc.bcm.edu	hg19	X	136649847	136649847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZIC3	NM_003413	exon1	c.C997A	p.P333T	CCCTTCCCGGGCT	.	125.0	5.0	199.0	0.0	.	93	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144905572	144905572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SLITRK2	NM_001144005	exon5	c.G1629T	p.W543C	AGACTGGACAGAA	.	97.0	4.0	163.0	0.0	.	221	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	hg19	X	148037651	148037651	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	AFF2	NM_002025	exon11	c.C2076A	p.P692P	GGCTCCCGAGAAG	.	85.0	4.0	100.0	0.0	.	679	.	.	Atlas-SNP
ZNF185	7739	hgsc.bcm.edu	hg19	X	152128427	152128427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	ZNF185	NM_001178106	exon18	c.A1687G	p.S563G	CGAGAGAGCTGCA	.	53.0	4.0	73.0	0.0	.	92	.	.	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	hg19	X	153032892	153032892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	PLXNB3	NM_001163257	exon4	c.G679T	p.A227S	CCCCTGGCCATCC	.	66.0	10.0	50.0	0.0	.	208	.	.	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10197	10197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	ENST00000361227	exon1	c.G139A	p.A47T	TCCCCCGCCCGCG	.	11.0	11.0	10.0	0.0	.	.	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111985087	111985089	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	.	NM_183061	exon8	c.875_877del	p.292_293del	.	.	423.0	87.0	420.0	0.0	.	.	.	.	Pindel
WDR7	23335	hgsc.bcm.edu	hg19	18	54349915	54349915	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	WDR7	NM_052834	exon5	c.350delA	p.Y117fs	.	.	169.0	31.0	227.0	0.0	.	166	.	.	Pindel
BACE1	23621	hgsc.bcm.edu	hg19	11	117161738	117161739	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	BACE1	NM_012104	exon7	c.970_971insG	p.L324fs	.	.	72.0	17.0	145.0	0.0	.	33	.	.	Pindel
NCOA3	8202	hgsc.bcm.edu	hg19	20	46265318	46265320	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	NCOA3	NM_001174088	exon12	c.2217_2219del	p.739_740del	.	.	207.0	23.0	200.0	0.0	.	156	.	.	Pindel
SETD8	387893	hgsc.bcm.edu	hg19	12	123880916	123880924	+	In_Frame_Del	DEL	TCGCAAACT	TCGCAAACT	-	novel		TCGA-EP-A2KA-01A-11D-A183-10	TCGA-EP-A2KA-10A-01D-A183-10	TCGCAAACT	TCGCAAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	484a41c8-fcaf-488d-97dc-bfe6a4b88a95	a9d75099-91a1-40aa-a8f1-e6035acd821d	.	SETD8	NM_020382	exon5	c.533_541del	p.178_181del	.	.	63.0	17.0	102.0	0.0	.	35	.	.	Pindel
