Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AGRN	375790	hgsc.bcm.edu	hg19	1	981185	981185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGRN	NM_198576	exon15	c.C2609T	p.P870L	GTAAGCCCGGGGT	.	79.0	4.0	149.0	0.0	.	110	.	.	Atlas-SNP
PIK3CD	5293	hgsc.bcm.edu	hg19	1	9781914	9781914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIK3CD	NM_005026	exon16	c.A2051G	p.K684R	TGATGAAGCAGGT	.	28.0	4.0	33.0	0.0	.	86	.	.	Atlas-SNP
PIK3CD	5293	hgsc.bcm.edu	hg19	1	9782115	9782115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIK3CD	NM_005026	exon17	c.A2138G	p.E713G	CCAAGGAGCTGAT	.	82.0	4.0	147.0	0.0	.	86	.	.	Atlas-SNP
UBE4B	10277	hgsc.bcm.edu	hg19	1	10190866	10190866	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBE4B	NM_001105562	exon14	c.G1906T	p.G636X	GAGCTCGGAAGGG	.	77.0	4.0	116.0	0.0	.	233	.	.	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	hg19	1	12389898	12389898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPS13D	NM_015378	exon37	c.T8210C	p.L2737P	ATTTTCTTCAGCG	.	68.0	4.0	116.0	0.0	.	316	.	.	Atlas-SNP
AGMAT	79814	hgsc.bcm.edu	hg19	1	15901266	15901266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGMAT	NM_024758	exon6	c.C971A	p.P324Q	TCATACGGTGGTG	.	64.0	4.0	83.0	0.0	.	25	.	.	Atlas-SNP
VWA5B1	127731	hgsc.bcm.edu	hg19	1	20656794	20656794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VWA5B1	NM_001039500	exon10	c.T1376C	p.L459P	CGCGGCTCCTCTT	.	81.0	4.0	149.0	0.0	.	44	.	.	Atlas-SNP
KIF17	57576	hgsc.bcm.edu	hg19	1	21014288	21014288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIF17	NM_001122819	exon8	c.G1531T	p.D511Y	AGACATCGTCACT	.	73.0	4.0	124.0	0.0	.	130	.	.	Atlas-SNP
ALPL	249	hgsc.bcm.edu	hg19	1	21894730	21894730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALPL	NM_000478	exon7	c.C782A	p.P261Q	TCAAACCGAGATA	.	101.0	5.0	159.0	0.0	.	50	.	.	Atlas-SNP
USP48	84196	hgsc.bcm.edu	hg19	1	22084236	22084236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	USP48,colon,carcinoma,+2,1	USP48	NM_001032730	exon2	c.G175T	p.G59C	GCTCACCAATACC	.	78.0	5.0	104.0	0.0	.	91	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22180694	22180694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSPG2	NM_005529	exon50	c.A6431G	p.Y2144C	GGGGTGTAGCTGG	.	58.0	4.0	109.0	0.0	.	311	.	.	Atlas-SNP
CDC42	998	hgsc.bcm.edu	hg19	1	22417973	22417973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDC42	NM_001039802	exon7	c.C539T	p.P180L	AGCCTCCAGAACC	.	77.0	4.0	167.0	0.0	.	26	.	.	Atlas-SNP
SYTL1	84958	hgsc.bcm.edu	hg19	1	27677307	27677307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYTL1	NM_001193308	exon11	c.T1028C	p.L343P	CCGAGCTTCAGGG	.	100.0	4.0	137.0	0.0	.	57	.	.	Atlas-SNP
MAP3K6	9064	hgsc.bcm.edu	hg19	1	27691344	27691344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP3K6	NM_004672	exon2	c.G400A	p.G134S	GCACACCAAGGTG	.	123.0	5.0	165.0	0.0	.	134	.	.	Atlas-SNP
STX12	23673	hgsc.bcm.edu	hg19	1	28128323	28128323	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	STX12	NM_177424	exon4	c.T423C	p.L141L	TCGTCTTTCTGTA	.	99.0	4.0	135.0	0.0	.	26	.	.	Atlas-SNP
DNAJC8	22826	hgsc.bcm.edu	hg19	1	28536549	28536549	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJC8	NM_014280	exon5	c.G333A	p.L111L	CTGATCCAGTAGC	.	74.0	4.0	132.0	0.0	.	13	.	.	Atlas-SNP
HCRTR1	3061	hgsc.bcm.edu	hg19	1	32087137	32087137	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HCRTR1	NM_001525	exon6	c.C682T	p.L228L	GCCCCACTGGGCC	.	75.0	4.0	115.0	0.0	.	20	.	.	Atlas-SNP
HMGB4	127540	hgsc.bcm.edu	hg19	1	34330051	34330051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HMGB4	NM_145205	exon2	c.A259G	p.K87E	CGGAGAAAGCGGG	.	94.0	4.0	178.0	0.0	.	27	.	.	Atlas-SNP
KIAA0319L	79932	hgsc.bcm.edu	hg19	1	35928256	35928256	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0319L	NM_024874	exon8	c.T1260C	p.S420S	TGGCAAAGAGATC	.	56.0	4.0	96.0	0.0	.	156	.	.	Atlas-SNP
AGO4	192670	hgsc.bcm.edu	hg19	1	36298149	36298149	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	EIF2C4,bladder,carcinoma,0,1	.	NM_017629	exon11	c.C1357T	p.Q453X	CAGAAACAATGTA	.	82.0	4.0	119.0	0.0	.	.	.	.	Atlas-SNP
AGO3	192669	hgsc.bcm.edu	hg19	1	36439085	36439085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_024852	exon5	c.A631G	p.M211V	CCTGCCATGTGGA	.	139.0	6.0	236.0	0.0	.	.	.	.	Atlas-SNP
MFSD2A	84879	hgsc.bcm.edu	hg19	1	40430920	40430920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MFSD2A	NM_001136493	exon4	c.T430C	p.F144L	GCCTACTTCCTCA	.	95.0	4.0	116.0	0.0	.	53	.	.	Atlas-SNP
ZNF691	51058	hgsc.bcm.edu	hg19	1	43317025	43317025	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF691	NM_001242739	exon4	c.G489T	p.R163R	CGAGCGGATCCAC	.	48.0	4.0	74.0	0.0	.	30	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43913358	43913358	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SZT2_ENST00000562955,colon,carcinoma,0,3	SZT2	NM_015284	exon66	c.G9258T	p.S3086S	GGTGTCGGCATGG	.	53.0	3.0	42.0	0.0	.	383	.	.	Atlas-SNP
KLF17	128209	hgsc.bcm.edu	hg19	1	44595054	44595054	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLF17	NM_173484	exon2	c.C111T	p.N37N	CTTGAACATGTCT	.	84.0	4.0	144.0	0.0	.	92	.	.	Atlas-SNP
RNF220	55182	hgsc.bcm.edu	hg19	1	45092001	45092001	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF220	NM_018150	exon5	c.A837G	p.E279E	GAGGGAAGGAGAG	.	64.0	4.0	109.0	0.0	.	56	.	.	Atlas-SNP
ZSWIM5	57643	hgsc.bcm.edu	hg19	1	45525908	45525908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZSWIM5	NM_020883	exon3	c.C964A	p.P322T	CTGTGGGGTCAGG	.	85.0	4.0	123.0	0.0	.	72	.	.	Atlas-SNP
MUTYH	4595	hgsc.bcm.edu	hg19	1	45800108	45800108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUTYH	NM_012222	exon2	c.A112G	p.K38E	CATGCTTCTGCCT	.	79.0	4.0	133.0	0.0	.	38	.	.	Atlas-SNP
EFCAB14	9813	hgsc.bcm.edu	hg19	1	47149060	47149060	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_014774	exon10	c.G1224A	p.L408L	TTTTGGCAATGCT	.	59.0	4.0	106.0	0.0	.	.	.	.	Atlas-SNP
CYP4A11	1579	hgsc.bcm.edu	hg19	1	47406949	47406949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP4A11	NM_000778	exon1	c.T157C	p.C53R	GAGGGCACGGGAA	.	71.0	4.0	160.0	0.0	.	77	.	.	Atlas-SNP
TTC39A	22996	hgsc.bcm.edu	hg19	1	51767296	51767296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39A	NM_001144832	exon12	c.A1013G	p.K338R	GACATCTTCCACT	.	44.0	4.0	100.0	0.0	.	40	.	.	Atlas-SNP
KTI12	112970	hgsc.bcm.edu	hg19	1	52499377	52499377	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KTI12	NM_138417	exon1	c.A57G	p.E19E	CAACTCTTCAGCA	.	78.0	5.0	100.0	0.0	.	30	.	.	Atlas-SNP
ZYG11B	79699	hgsc.bcm.edu	hg19	1	53237069	53237069	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZYG11B	NM_024646	exon3	c.G574C	p.D192H	AGCTTGGATATTT	.	60.0	4.0	66.0	0.0	.	61	.	.	Atlas-SNP
SSBP3	23648	hgsc.bcm.edu	hg19	1	54717508	54717508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SSBP3	NM_145716	exon8	c.A533G	p.Q178R	AATGGCTGTGTCC	.	111.0	5.0	233.0	0.0	.	65	.	.	Atlas-SNP
ACOT11	26027	hgsc.bcm.edu	hg19	1	55050328	55050328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ACOT11	NM_147161	exon2	c.G34T	p.G12C	CCCCAGGGCTTGG	.	87.0	4.0	148.0	0.0	.	105	.	.	Atlas-SNP
C8B	732	hgsc.bcm.edu	hg19	1	57406626	57406626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C8B	NM_000066	exon9	c.A1294G	p.S432G	GCTCACTTGCCCC	.	99.0	4.0	134.0	0.0	.	107	.	.	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	hg19	1	60503758	60503758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C1orf87	NM_152377	exon6	c.T769C	p.W257R	AAAACCAGAGTAG	.	86.0	4.0	154.0	0.0	.	55	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62626601	62626601	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	INADL	NM_176877	exon43	c.C5400A	p.A1800A	GACGGCCGATTAA	.	51.0	4.0	85.0	0.0	.	179	.	.	Atlas-SNP
LEPR	3953	hgsc.bcm.edu	hg19	1	66067256	66067256	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LEPR	NM_001003680	exon9	c.T1176C	p.T392T	AGTTACTTTTTTC	.	90.0	4.0	166.0	0.0	.	284	.	.	Atlas-SNP
WLS	79971	hgsc.bcm.edu	hg19	1	68610266	68610266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WLS	NM_024911	exon10	c.T1348C	p.F450L	CGATGAAGAAGAT	.	62.0	4.0	111.0	0.0	.	97	.	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	hg19	1	79404924	79404924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ELTD1	NM_022159	exon4	c.C345A	p.C115X	TAAATGGCAGTTT	.	278.0	219.0	450.0	1.0	.	143	.	.	Atlas-SNP
CLCA2	9635	hgsc.bcm.edu	hg19	1	86900325	86900325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLCA2	NM_006536	exon6	c.C869T	p.P290L	GCTTTCCCATGAA	.	89.0	4.0	131.0	0.0	.	102	.	.	Atlas-SNP
GBP5	115362	hgsc.bcm.edu	hg19	1	89729496	89729496	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GBP5	NM_052942	exon9	c.G1285T	p.G429X	GGCCTCCTGGCTT	.	137.0	6.0	209.0	0.0	.	65	.	.	Atlas-SNP
GBP6	163351	hgsc.bcm.edu	hg19	1	89843997	89843997	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GBP6	NM_198460	exon5	c.A450G	p.E150E	CACAGAACTAATT	.	64.0	4.0	95.0	0.0	.	87	.	.	Atlas-SNP
LRRC8D	55144	hgsc.bcm.edu	hg19	1	90399028	90399028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC8D	NM_018103	exon3	c.C401A	p.P134Q	AAGATCCAACAGG	.	95.0	4.0	136.0	0.0	.	78	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94517230	94517230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA4	NM_000350	exon17	c.G2612T	p.W871L	AAGTACCAAGGAA	.	102.0	5.0	154.0	0.0	.	275	.	.	Atlas-SNP
AGL	178	hgsc.bcm.edu	hg19	1	100366213	100366213	+	Silent	SNP	G	G	T	rs149393587	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGL	NM_000644	exon26	c.G3384T	p.A1128A	ATTTGCGGGTACC	.	106.0	6.0	163.0	0.0	.	137	.	G|0.997;A|0.003	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109794818	109794818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CELSR2	NM_001408	exon1	c.A2117G	p.N706S	ACGCCAACACCCA	.	61.0	4.0	99.0	0.0	.	228	.	.	Atlas-SNP
SLC16A4	9122	hgsc.bcm.edu	hg19	1	110918150	110918150	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC16A4	NM_004696	exon8	c.A1266G	p.T422T	GTTTACTGTAGAA	.	85.0	5.0	169.0	0.0	.	47	.	.	Atlas-SNP
CHIA	27159	hgsc.bcm.edu	hg19	1	111857937	111857937	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHIA	NM_201653	exon6	c.C360A	p.I120I	TTTCATCACCTCA	.	96.0	4.0	138.0	0.0	.	115	.	.	Atlas-SNP
SYT6	148281	hgsc.bcm.edu	hg19	1	114682411	114682411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYT6	NM_205848	exon2	c.G83A	p.G28D	ATGTTGCCTCTGA	.	63.0	4.0	91.0	0.0	.	66	.	.	Atlas-SNP
CSDE1	7812	hgsc.bcm.edu	hg19	1	115282361	115282361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CSDE1_ENST00000369530,NS,carcinoma,0,2	CSDE1	NM_001130523	exon4	c.T289C	p.F97L	AGTGGAAGAAAAG	.	41.0	3.0	139.0	0.0	.	145	.	.	Atlas-SNP
TRIM45	80263	hgsc.bcm.edu	hg19	1	117661332	117661332	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIM45	NM_001145635	exon2	c.C546A	p.Y182X	CCGGCTGTAGCCT	.	87.0	4.0	137.0	0.0	.	55	.	.	Atlas-SNP
SPAG17	200162	hgsc.bcm.edu	hg19	1	118550817	118550817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPAG17	NM_206996	exon31	c.G4437T	p.E1479D	AGGACCCTCGGCT	.	77.0	4.0	78.0	0.0	.	263	.	.	Atlas-SNP
CHD1L	9557	hgsc.bcm.edu	hg19	1	146724367	146724367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD1L	NM_004284	exon2	c.A217G	p.M73V	GATGAGATGGGCC	.	120.0	5.0	99.0	0.0	.	72	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153906108	153906108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DENND4B	NM_014856	exon20	c.C3181T	p.L1061F	GTTGGAGGCGGGC	.	379.0	219.0	220.0	0.0	.	210	.	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	hg19	1	156908262	156908262	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGEF11	NM_198236	exon38	c.T4140C	p.S1380S	CTGGCCACTCTCT	.	117.0	6.0	106.0	0.0	.	168	.	.	Atlas-SNP
CCDC19	25790	hgsc.bcm.edu	hg19	1	159846466	159846466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC19	NM_012337	exon10	c.G1232A	p.R411Q	TTCTTCCGCGCAT	.	1191.0	239.0	851.0	1.0	.	79	.	.	Atlas-SNP
PIGM	93183	hgsc.bcm.edu	hg19	1	160000609	160000609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIGM	NM_145167	exon1	c.C921A	p.F307L	ATAGGCGAAAGAC	.	94.0	4.0	75.0	0.0	.	27	.	.	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172525148	172525148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_014283	exon4	c.C428A	p.P143Q	TCACTCCAATCTC	.	98.0	4.0	71.0	0.0	.	.	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	180013222	180013222	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP350	NM_014810	exon21	c.A4536G	p.E1512E	TAAAGAAGGGACC	.	96.0	5.0	70.0	0.0	.	418	.	.	Atlas-SNP
CRB1	23418	hgsc.bcm.edu	hg19	1	197391072	197391072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRB1	NM_001257966	exon6	c.C2114A	p.P705H	AAGGCCCCAACTG	.	92.0	4.0	67.0	0.0	.	284	.	.	Atlas-SNP
CR1L	1379	hgsc.bcm.edu	hg19	1	207890960	207890960	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CR1L	NM_175710	exon11	c.C1566T	p.I522I	CACCATCCGCCGC	.	546.0	77.0	361.0	0.0	.	97	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208202173	208202173	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLXNA2	NM_025179	exon31	c.5438+2T>C	.	CTACTGACCTCTC	.	84.0	4.0	81.0	0.0	.	178	.	.	Atlas-SNP
PROX1	5629	hgsc.bcm.edu	hg19	1	214170676	214170676	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PROX1	NM_001270616	exon2	c.G798T	p.S266S	TGATTCGGAAAAT	.	88.0	4.0	69.0	0.0	.	124	.	.	Atlas-SNP
TGFB2	7042	hgsc.bcm.edu	hg19	1	218520057	218520057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TGFB2	NM_003238	exon1	c.T14C	p.V5A	ACTGTGTGCTGAG	.	78.0	4.0	47.0	0.0	.	102	.	.	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	hg19	1	220170686	220170686	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EPRS	NM_004446	exon19	c.2182-2A>G	.	GAGGTCTACCAAG	.	49.0	4.0	42.0	0.0	.	140	.	.	Atlas-SNP
TMEM63A	9725	hgsc.bcm.edu	hg19	1	226059703	226059703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM63A	NM_014698	exon5	c.A317G	p.D106G	TCAAAGTCTTGTT	.	92.0	4.0	64.0	0.0	.	75	.	.	Atlas-SNP
SNAP47	116841	hgsc.bcm.edu	hg19	1	227947130	227947130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAP47	NM_053052	exon3	c.T1067C	p.L356P	TGGTGCTCAGAAG	.	64.0	4.0	22.0	0.0	.	42	.	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	hg19	1	233136202	233136202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCNXL2	NM_014801	exon30	c.T5177C	p.V1726A	CAGATGACCACCT	.	97.0	4.0	77.0	0.0	.	204	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240371184	240371184	+	Silent	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FMN2	NM_020066	exon5	c.T3072A	p.P1024P	ACCCCCTCTACCC	.	226.0	16.0	173.0	0.0	.	451	.	.	Atlas-SNP
OR2T3	343173	hgsc.bcm.edu	hg19	1	248637025	248637025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2T3	NM_001005495	exon1	c.A374G	p.Y125C	TGGCCTATGACCG	.	787.0	209.0	545.0	0.0	.	79	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1440156	1440156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TPO	NM_175719	exon5	c.G482T	p.R161I	ACAACAGGTATTG	.	105.0	58.0	119.0	0.0	.	224	.	.	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	hg19	2	26690270	26690270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OTOF	NM_194248	exon34	c.C4190T	p.A1397V	TCGGGGGCCTCGG	.	117.0	5.0	129.0	0.0	.	524	.	.	Atlas-SNP
AGBL5	60509	hgsc.bcm.edu	hg19	2	27279548	27279548	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AGBL5	NM_021831	exon8	c.C1423T	p.Q475X	GACTTCCAGGGCT	.	76.0	4.0	63.0	0.0	.	126	.	.	Atlas-SNP
GTF3C2	2976	hgsc.bcm.edu	hg19	2	27550059	27550059	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GTF3C2	NM_001521	exon19	c.C2502T	p.N834N	AGCCTCCAGCTGC	.	44.0	4.0	64.0	0.0	.	73	.	.	Atlas-SNP
C2orf16	84226	hgsc.bcm.edu	hg19	2	27803792	27803792	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C2orf16	NM_032266	exon1	c.T4353C	p.P1451P	CAGACCTCTTCGA	.	73.0	4.0	68.0	0.0	.	357	.	.	Atlas-SNP
MAP4K3	8491	hgsc.bcm.edu	hg19	2	39535144	39535144	+	Silent	SNP	G	G	A	rs373302450		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP4K3	NM_003618	exon15	c.C1059T	p.P353P	ACTGTCGGGCTGT	.	75.0	4.0	88.0	0.0	.	109	.	.	Atlas-SNP
MSH6	2956	hgsc.bcm.edu	hg19	2	48027261	48027261	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MSH6	NM_000179	exon4	c.T2139C	p.D713D	CTTGGATTCTGAC	.	100.0	4.0	95.0	0.0	.	341	.	.	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	hg19	2	48914978	48914978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LHCGR	NM_000233	exon11	c.G1958T	p.R653M	TCTTTCCTTCTAT	.	113.0	5.0	121.0	0.0	.	154	.	.	Atlas-SNP
EML6	400954	hgsc.bcm.edu	hg19	2	55194149	55194149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EML6	NM_001039753	exon38	c.C5507T	p.A1836V	CAGGTGCCTATAA	.	89.0	4.0	113.0	0.0	.	85	.	.	Atlas-SNP
AFTPH	54812	hgsc.bcm.edu	hg19	2	64779485	64779485	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AFTPH	NM_017657	exon2	c.G877T	p.G293X	ACTGATGGAGAGG	.	148.0	6.0	154.0	0.0	.	117	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73680043	73680043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALMS1	NM_015120	exon8	c.A6386G	p.Q2129R	CTGGCCAGAAAAC	.	99.0	4.0	94.0	0.0	.	384	.	.	Atlas-SNP
C2orf81	388963	hgsc.bcm.edu	hg19	2	74643206	74643206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C2orf81	NM_001145054	exon2	c.G190T	p.G64W	TGTCCCCTACGAC	.	64.0	4.0	82.0	0.0	.	23	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80085187	80085187	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CTNNA2	NM_001164883	exon4	c.C347A	p.S116X	CTTGCTCGTCGGT	.	96.0	4.0	102.0	0.0	.	462	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80085274	80085274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CTNNA2	NM_001164883	exon4	c.A434G	p.D145G	TGGCAGATGTCAT	.	72.0	4.0	88.0	0.0	.	462	.	.	Atlas-SNP
SEMA4C	54910	hgsc.bcm.edu	hg19	2	97529483	97529483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEMA4C	NM_017789	exon12	c.T1379C	p.L460P	TCAATCAGGTGAA	.	72.0	4.0	92.0	0.0	.	56	.	.	Atlas-SNP
MAP4K4	9448	hgsc.bcm.edu	hg19	2	102486261	102486261	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP4K4	NM_145686	exon20	c.2306+2T>C	.	GCAGCGTCAGTCC	.	112.0	5.0	78.0	0.0	.	111	.	.	Atlas-SNP
PTPN4	5775	hgsc.bcm.edu	hg19	2	120720202	120720202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTPN4	NM_002830	exon24	c.A2291G	p.H764R	AATGTCACCAATA	.	116.0	5.0	97.0	0.0	.	89	.	.	Atlas-SNP
ERCC3	2071	hgsc.bcm.edu	hg19	2	128051105	128051105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERCC3	NM_000122	exon2	c.C218T	p.S73F	GGCCTGGAGGTGT	.	172.0	54.0	174.0	0.0	.	73	.	.	Atlas-SNP
MZT2A	653784	hgsc.bcm.edu	hg19	2	132249809	132249809	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MZT2A	NM_001085365	exon1	c.G141T	p.A47A	GCCGCCCGCCGCC	.	42.0	4.0	39.0	0.0	.	6	.	.	Atlas-SNP
TMEM163	81615	hgsc.bcm.edu	hg19	2	135308182	135308182	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM163	NM_030923	exon4	c.C417T	p.Y139Y	GTTGCTGTAACGC	.	100.0	4.0	119.0	0.0	.	34	.	.	Atlas-SNP
GALNT13	114805	hgsc.bcm.edu	hg19	2	155295139	155295139	+	Silent	SNP	C	C	A	rs182009673	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GALNT13	NM_052917	exon12	c.C1431A	p.T477T	CCGAACCGATGAC	.	117.0	5.0	141.0	0.0	.	170	.	C|0.999;T|0.001	Atlas-SNP
PKP4	8502	hgsc.bcm.edu	hg19	2	159519916	159519916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PKP4	NM_001005476	exon15	c.T2536C	p.S846P	GAAGGCTCTGCAG	.	118.0	5.0	126.0	0.0	.	133	.	.	Atlas-SNP
MARCH7	64844	hgsc.bcm.edu	hg19	2	160605076	160605076	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARCH7	NM_022826	exon5	c.A1275G	p.R425R	TTTTAGAAGAGAA	.	87.0	4.0	77.0	0.0	.	48	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166900257	166900257	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCN1A	NM_001165963	exon11	c.T1965C	p.G655G	AGGTCCACCAACC	.	115.0	5.0	142.0	0.0	.	641	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170104009	170104009	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRP2	NM_004525	exon20	c.T2787C	p.T929T	CCAGTCAGTAAAA	.	86.0	4.0	77.0	0.0	.	751	.	.	Atlas-SNP
GPR155	151556	hgsc.bcm.edu	hg19	2	175324698	175324698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPR155	NM_001033045	exon11	c.A1679G	p.H560R	ACTTTGTGGCTCT	.	78.0	4.0	81.0	0.0	.	76	.	.	Atlas-SNP
OSBPL6	114880	hgsc.bcm.edu	hg19	2	179197627	179197627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OSBPL6	NM_001201482	exon8	c.G516T	p.W172C	TGCATGGGTCTCC	.	122.0	5.0	126.0	0.0	.	178	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179399454	179399454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTN	NM_001267550	exon358	c.C101888T	p.A33963V	TGACGGGCTTGAC	.	99.0	4.0	153.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179476169	179476169	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTN	NM_001267550	exon269	c.A50787G	p.R16929R	GACTGCTCTCACT	.	122.0	5.0	121.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179647564	179647564	+	Silent	SNP	G	G	T	rs371447978	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TTN_ENST00000360870,NS,carcinoma,0,11	TTN	NM_001267550	exon18	c.C3069A	p.T1023T	GCTGACGGTTCCA	.	97.0	4.0	120.0	0.0	.	18412	.	.	Atlas-SNP
ZC3H15	55854	hgsc.bcm.edu	hg19	2	187366137	187366137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3H15	NM_018471	exon4	c.G427A	p.E143K	AGAGATGAAGAAC	.	125.0	5.0	78.0	0.0	.	28	.	.	Atlas-SNP
SLC40A1	30061	hgsc.bcm.edu	hg19	2	190426883	190426883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC40A1	NM_014585	exon8	c.G1437T	p.L479F	TTGCAGCAACTGT	.	97.0	4.0	66.0	0.0	.	51	.	.	Atlas-SNP
PMS1	5378	hgsc.bcm.edu	hg19	2	190656664	190656664	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PMS1	NM_001128143	exon2	c.A129G	p.K43K	TGTTAAACTGGTG	.	95.0	4.0	109.0	0.0	.	78	.	.	Atlas-SNP
NAB1	4664	hgsc.bcm.edu	hg19	2	191548468	191548468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAB1	NM_005966	exon7	c.G1010T	p.G337V	AGGATGGGTTTCC	.	80.0	5.0	91.0	0.0	.	31	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210806147	210806147	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	UNC80_ENST00000439458,NS,carcinoma,0,1	UNC80	NM_032504	exon43	c.C6651A	p.T2217T	CAACACCGCGGTG	.	94.0	4.0	90.0	0.0	.	280	.	.	Atlas-SNP
LANCL1	10314	hgsc.bcm.edu	hg19	2	211341073	211341073	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LANCL1	NM_001136574	exon2	c.C48G	p.S16S	GGCCAGGGATTTG	.	322.0	163.0	374.0	0.0	.	23	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211455601	211455601	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CPS1	NM_001122633	exon10	c.C936T	p.A312A	TGGTGCCAAAACC	.	70.0	4.0	53.0	0.0	.	485	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215797448	215797448	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA12	NM_173076	exon53	c.C7698A	p.A2566A	GTCTTTGGCAAAG	.	96.0	4.0	107.0	0.0	.	368	.	.	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218712394	218712394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TNS1,NS,carcinoma,0,2	TNS1	NM_022648	exon17	c.C2471A	p.P824Q	GTGGTCGGAAGGA	.	92.0	4.0	103.0	0.0	.	251	.	.	Atlas-SNP
PLCD4	84812	hgsc.bcm.edu	hg19	2	219480768	219480768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PLCD4,NS,carcinoma,0,1	PLCD4	NM_032726	exon3	c.G164A	p.G55D	CCAGGGGCAGTGC	.	68.0	3.0	61.0	0.0	.	51	.	.	Atlas-SNP
SERPINE2	5270	hgsc.bcm.edu	hg19	2	224856708	224856708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SERPINE2	NM_001136530	exon4	c.A533G	p.D178G	AGATTGTCAATCA	.	59.0	4.0	55.0	0.0	.	103	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225652004	225652004	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK10	NM_014689	exon49	c.A5529G	p.Q1843Q	GTCTCGTTGTTTC	.	99.0	4.0	112.0	0.0	.	308	.	.	Atlas-SNP
COL4A4	1286	hgsc.bcm.edu	hg19	2	227895215	227895215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL4A4	NM_000092	exon41	c.C3917T	p.P1306L	GGGCCTGGTGGGC	.	72.0	4.0	77.0	0.0	.	215	.	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	hg19	2	228881550	228881550	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPHKAP	NM_030623	exon7	c.T4020C	p.S1340S	CGAGGGAGAGCCA	.	99.0	4.0	111.0	0.0	.	750	.	.	Atlas-SNP
NPPC	4880	hgsc.bcm.edu	hg19	2	232790144	232790144	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPPC	NM_024409	exon2	c.G372A	p.L124L	ACATCCCAGGCCG	.	110.0	22.0	90.0	0.0	.	3	.	.	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	hg19	2	241826548	241826548	+	Missense_Mutation	SNP	C	C	A	rs373154669	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C2orf54	NM_001085437	exon5	c.G1283T	p.R428L	GAGATCCGGTCCT	.	71.0	4.0	93.0	0.0	.	14	.	.	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	hg19	2	242432429	242432429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FARP2	NM_014808	exon25	c.T2873C	p.L958S	TCTGTTTGTTCTT	.	98.0	4.0	81.0	0.0	.	92	.	.	Atlas-SNP
NEU4	129807	hgsc.bcm.edu	hg19	2	242756144	242756144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NEU4	NM_001167599	exon3	c.A296G	p.N99S	CCATGAACCCCTG	.	99.0	4.0	115.0	0.0	.	39	.	.	Atlas-SNP
SUMF1	285362	hgsc.bcm.edu	hg19	3	4458810	4458810	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SUMF1	NM_001164674	exon6	c.765+2T>C	.	TTACTCACAGGCG	.	77.0	4.0	83.0	0.0	.	23	.	.	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9032408	9032408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SRGAP3,bladder,carcinoma,+1,1	SRGAP3	NM_014850	exon21	c.T2674C	p.C892R	TGGGGCAGGCAGC	.	145.0	6.0	160.0	2.0	.	146	.	.	Atlas-SNP
NUP210	23225	hgsc.bcm.edu	hg19	3	13364885	13364885	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUP210	NM_024923	exon34	c.C4692T	p.P1564P	CTGGATGGGGTGG	.	89.0	4.0	89.0	0.0	.	182	.	.	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19575099	19575099	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCNH8	NM_144633	exon16	c.T2832C	p.Y944Y	TGCTTATACCCAA	.	120.0	5.0	125.0	0.0	.	189	.	.	Atlas-SNP
UBP1	7342	hgsc.bcm.edu	hg19	3	33444345	33444345	+	Missense_Mutation	SNP	G	G	T	rs373493970		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBP1	NM_014517	exon9	c.C979A	p.P327T	GCGCTGGGGAAGG	.	173.0	7.0	184.0	0.0	.	42	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38150965	38150965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLEC1	NM_007337	exon22	c.A3172G	p.M1058V	TCAGGCATGAAGA	.	91.0	4.0	95.0	0.0	.	278	.	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	hg19	3	39229651	39229651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XIRP1	NM_001198621	exon2	c.C1286A	p.P429H	CTCTGGGGGGCAC	.	86.0	4.0	68.0	0.0	.	173	.	.	Atlas-SNP
ULK4	54986	hgsc.bcm.edu	hg19	3	41860960	41860960	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ULK4	NM_017886	exon19	c.T1803C	p.V601V	CAAGGGAACAGCC	.	60.0	4.0	67.0	0.0	.	150	.	.	Atlas-SNP
ZNF35	7584	hgsc.bcm.edu	hg19	3	44700749	44700749	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF35	NM_003420	exon4	c.A894G	p.K298K	TCAAAAAATCCAC	.	62.0	4.0	63.0	0.0	.	34	.	.	Atlas-SNP
LIMD1	8994	hgsc.bcm.edu	hg19	3	45637017	45637017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIMD1	NM_014240	exon1	c.C646A	p.P216T	AGTGACCCACCAC	.	61.0	4.0	66.0	0.0	.	34	.	.	Atlas-SNP
CCR5	1234	hgsc.bcm.edu	hg19	3	46414949	46414949	+	Missense_Mutation	SNP	C	C	A	rs113869679	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CCR5,colon,carcinoma,0,1	CCR5	NM_000579	exon3	c.C556A	p.Q186K	TACAGTCAGTATC	.	125.0	6.0	80.0	1.0	.	128	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47129614	47129614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SETD2_ENST00000409792,NS,carcinoma,0,2	SETD2	NM_014159	exon10	c.G5266A	p.E1756K	TGAGTTCCAGACA	.	49.0	2.0	43.0	0.0	.	721	.	.	Atlas-SNP
CSPG5	10675	hgsc.bcm.edu	hg19	3	47618664	47618664	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSPG5	NM_006574	exon2	c.T852C	p.D284D	TTTGTCATCCTCC	.	82.0	4.0	84.0	0.0	.	46	.	.	Atlas-SNP
ATRIP	84126	hgsc.bcm.edu	hg19	3	48502119	48502119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATRIP	NM_130384	exon8	c.C1666T	p.L556F	GGTCACCTTCAAG	.	87.0	5.0	105.0	0.0	.	41	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48625362	48625362	+	Silent	SNP	T	T	C	rs201566458		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL7A1	NM_000094	exon21	c.A2721G	p.E907E	GGACTGTTCCTGG	.	69.0	4.0	60.0	0.0	.	320	.	.	Atlas-SNP
NCKIPSD	51517	hgsc.bcm.edu	hg19	3	48720411	48720411	+	Missense_Mutation	SNP	C	C	T	rs368902568		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NCKIPSD	NM_184231	exon2	c.G206A	p.R69Q	ATGGCCCGGTCAA	.	99.0	4.0	94.0	0.0	.	52	.	.	Atlas-SNP
DALRD3	55152	hgsc.bcm.edu	hg19	3	49053492	49053492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DALRD3	NM_001009996	exon10	c.A1357G	p.I453V	GGAGGATACTGTT	.	88.0	4.0	93.0	0.0	.	57	.	.	Atlas-SNP
DALRD3	55152	hgsc.bcm.edu	hg19	3	49053675	49053675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DALRD3	NM_001009996	exon9	c.G1245T	p.E415D	GTAACTCTCAAAG	.	81.0	4.0	78.0	0.0	.	57	.	.	Atlas-SNP
RNF123	63891	hgsc.bcm.edu	hg19	3	49735904	49735904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF123	NM_022064	exon8	c.C515T	p.A172V	CCTATGCCTATGA	.	90.0	5.0	115.0	0.0	.	100	.	.	Atlas-SNP
RBM5	10181	hgsc.bcm.edu	hg19	3	50154760	50154760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RBM5	NM_005778	exon24	c.G2270T	p.R757L	GCTGGCGGGAAGG	.	114.0	5.0	127.0	0.0	.	76	.	.	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	hg19	3	51297588	51297588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	DOCK3_ENST00000266037,NS,carcinoma,0,2	DOCK3	NM_004947	exon23	c.C2186A	p.A729D	TTCAGGCCTTGGA	.	182.0	8.0	193.0	0.0	.	397	.	.	Atlas-SNP
VPRBP	9730	hgsc.bcm.edu	hg19	3	51456168	51456168	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPRBP	NM_014703	exon15	c.T3240C	p.C1080C	GTTGTGACAGTTA	.	90.0	4.0	94.0	0.0	.	107	.	.	Atlas-SNP
ERC2	26059	hgsc.bcm.edu	hg19	3	56207475	56207475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ERC2	NM_015576	exon4	c.A1148G	p.K383R	CCTACCTTCATTT	.	93.0	4.0	89.0	0.0	.	221	.	.	Atlas-SNP
FAM208A	23272	hgsc.bcm.edu	hg19	3	56658883	56658883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM208A	NM_001112736	exon22	c.C4291G	p.Q1431E	GTTGCTGTATGTT	.	326.0	167.0	360.0	1.0	.	113	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62459862	62459862	+	Missense_Mutation	SNP	C	C	T	rs368477906		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADPS	NM_003716	exon24	c.G3463A	p.E1155K	CCATTTCCATGCT	.	70.0	4.0	64.0	0.0	.	387	.	.	Atlas-SNP
PDZRN3	23024	hgsc.bcm.edu	hg19	3	73433257	73433257	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDZRN3	NM_015009	exon10	c.T2460C	p.P820P	ATAGGTAGGGGTG	.	73.0	4.0	82.0	0.0	.	196	.	.	Atlas-SNP
CADM2	253559	hgsc.bcm.edu	hg19	3	85932567	85932567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CADM2	NM_001167675	exon4	c.C365T	p.T122I	TCAAAACTTCCAA	.	121.0	31.0	157.0	0.0	.	195	.	.	Atlas-SNP
OR5K4	403278	hgsc.bcm.edu	hg19	3	98073598	98073598	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.,4	OR5K4	NM_001005517	exon1	c.A901T	p.I301F	AAAAAAATTATGA	.	42.0	5.0	22.0	0.0	.	75	.	.	Atlas-SNP
PLCXD2	257068	hgsc.bcm.edu	hg19	3	111427204	111427204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLCXD2	NM_001185106	exon2	c.C595A	p.L199M	TTGACGCTGCGAA	.	118.0	5.0	141.0	0.0	.	36	.	.	Atlas-SNP
SLC15A2	6565	hgsc.bcm.edu	hg19	3	121647383	121647383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC15A2	NM_021082	exon15	c.A1322G	p.E441G	TGATAGAGTCCAT	.	100.0	6.0	126.0	0.0	.	92	.	.	Atlas-SNP
SEMA5B	54437	hgsc.bcm.edu	hg19	3	122646670	122646670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SEMA5B_ENST00000451055,bladder,carcinoma,0,4	SEMA5B	NM_001256347	exon8	c.C979A	p.R327S	CAGTGCGAAGCGG	.	75.0	3.0	54.0	0.0	.	303	.	.	Atlas-SNP
RHO	6010	hgsc.bcm.edu	hg19	3	129249881	129249881	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RHO	NM_000539	exon2	c.G524A	p.W175X	CCGGCTGGTCCAG	.	66.0	4.0	48.0	0.0	.	57	.	.	Atlas-SNP
ASTE1	28990	hgsc.bcm.edu	hg19	3	130735171	130735171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ASTE1	NM_014065	exon5	c.T1526C	p.L509P	TCCTGCAGCTCTT	.	119.0	5.0	119.0	0.0	.	67	.	.	Atlas-SNP
PRR23A	729627	hgsc.bcm.edu	hg19	3	138725110	138725110	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRR23A	NM_001134659	exon1	c.A1G	p.M1V	TGCCCATAGCCTC	.	12.0	8.0	19.0	0.0	.	35	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142281918	142281918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATR	NM_001184	exon4	c.G326T	p.R109L	GCAATCCGCAGAA	.	83.0	4.0	87.0	0.0	.	285	.	.	Atlas-SNP
PLSCR1	5359	hgsc.bcm.edu	hg19	3	146246440	146246440	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLSCR1	NM_021105	exon4	c.T273C	p.P91P	TAATGGAGGCTGT	.	99.0	4.0	141.0	0.0	.	35	.	.	Atlas-SNP
HPS3	84343	hgsc.bcm.edu	hg19	3	148880655	148880655	+	Nonsense_Mutation	SNP	C	C	A	rs373037058	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HPS3	NM_032383	exon13	c.C2471A	p.S824X	GAACATCGGAGGA	.	79.0	4.0	74.0	0.0	.	104	.	.	Atlas-SNP
WWTR1	25937	hgsc.bcm.edu	hg19	3	149243898	149243898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	WWTR1,colon,carcinoma,0,1	WWTR1	NM_001168278	exon7	c.C920T	p.S307L	TCCCTCGAATGAT	.	69.0	3.0	60.0	0.0	.	42	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	151107911	151107911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MED12L	NM_053002	exon36	c.T5491C	p.S1831P	AACCAATCTCTTA	.	55.0	4.0	52.0	0.0	.	271	.	.	Atlas-SNP
IGSF10	285313	hgsc.bcm.edu	hg19	3	151174848	151174848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IGSF10	NM_178822	exon2	c.C290T	p.P97L	TTGTCAGGGATTG	.	91.0	4.0	88.0	0.0	.	279	.	.	Atlas-SNP
GFM1	85476	hgsc.bcm.edu	hg19	3	158364696	158364696	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GFM1	NM_024996	exon4	c.C532A	p.R178R	TTGGACCGAATGG	.	92.0	4.0	93.0	0.0	.	83	.	.	Atlas-SNP
OTOL1	131149	hgsc.bcm.edu	hg19	3	161221475	161221475	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OTOL1	NM_001080440	exon4	c.T1179C	p.H393H	CTACCATATTACG	.	72.0	4.0	71.0	0.0	.	63	.	.	Atlas-SNP
LRRIQ4	344657	hgsc.bcm.edu	hg19	3	169546665	169546665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRIQ4	NM_001080460	exon2	c.G1139T	p.G380V	ACATTGGGCAAGA	.	88.0	4.0	69.0	0.0	.	68	.	.	Atlas-SNP
MAP3K13	9175	hgsc.bcm.edu	hg19	3	185198180	185198180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP3K13	NM_004721	exon13	c.C2662A	p.L888M	GACGACCTGCTGT	.	73.0	4.0	134.0	0.0	.	209	.	.	Atlas-SNP
LIPH	200879	hgsc.bcm.edu	hg19	3	185236957	185236957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIPH	NM_139248	exon6	c.T859C	p.S287P	TTTGTGACGTGCC	.	99.0	4.0	117.0	0.0	.	56	.	.	Atlas-SNP
FETUB	26998	hgsc.bcm.edu	hg19	3	186358341	186358341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FETUB	NM_014375	exon1	c.T92C	p.L31P	CGGCTCTGCTCTC	.	129.0	6.0	174.0	0.0	.	53	.	.	Atlas-SNP
LRRC15	131578	hgsc.bcm.edu	hg19	3	194080638	194080638	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC15	NM_001135057	exon3	c.C1153T	p.Q385X	GGAGCTGTCTGAG	.	91.0	4.0	117.0	0.0	.	137	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195517320	195517320	+	Silent	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUC4	NM_018406	exon2	c.C1131G	p.T377T	GGATGAGGTGGTT	.	377.0	117.0	394.0	0.0	.	1505	.	.	Atlas-SNP
TMEM175	84286	hgsc.bcm.edu	hg19	4	951958	951958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM175	NM_032326	exon11	c.G1189A	p.A397T	ACCACGGCGCTGC	.	91.0	4.0	112.0	0.0	.	44	.	.	Atlas-SNP
TACC3	10460	hgsc.bcm.edu	hg19	4	1725265	1725265	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC3	NM_006342	exon2	c.A117G	p.S39S	TGTGTCACAGAAA	.	99.0	4.0	155.0	0.0	.	69	.	.	Atlas-SNP
JAKMIP1	152789	hgsc.bcm.edu	hg19	4	6087187	6087187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JAKMIP1	NM_001099433	exon4	c.C794A	p.P265Q	CCGGGCGGGAGCT	.	63.0	4.0	95.0	0.0	.	250	.	.	Atlas-SNP
KIAA0232	9778	hgsc.bcm.edu	hg19	4	6882546	6882546	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0232	NM_014743	exon10	c.A4041G	p.G1347G	TACAGGAGAGAGA	.	78.0	4.0	89.0	0.0	.	102	.	.	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	hg19	4	7719906	7719906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SORCS2,colon,carcinoma,0,1	SORCS2	NM_020777	exon18	c.A2420G	p.E807G	GGCAGGAGCAGGT	.	82.0	5.0	153.0	2.0	.	98	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13602619	13602619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_148894	exon10	c.A5905G	p.T1969A	CTGGTGTCACTTC	.	63.0	4.0	99.0	0.0	.	.	.	.	Atlas-SNP
CPEB2	132864	hgsc.bcm.edu	hg19	4	15005655	15005655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CPEB2	NM_001177381	exon1	c.T1358C	p.L453P	CCGGGCTGCCGTC	.	79.0	5.0	119.0	0.0	.	77	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20618726	20618726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLIT2	NM_004787	exon35	c.G4041T	p.Q1347H	ATGCCAGCCCAGC	.	79.0	4.0	100.0	0.0	.	290	.	.	Atlas-SNP
SLC34A2	10568	hgsc.bcm.edu	hg19	4	25664190	25664190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC34A2	NM_001177998	exon2	c.G68A	p.G23D	CCGCAGGTCAGCA	.	90.0	4.0	124.0	0.0	.	93	.	.	Atlas-SNP
SEL1L3	23231	hgsc.bcm.edu	hg19	4	25849271	25849271	+	Silent	SNP	G	G	T	rs200467510	bycluster;byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEL1L3	NM_015187	exon2	c.C378A	p.P126P	GTACACGGGAATG	.	97.0	4.0	172.0	0.0	.	62	.	G|0.996;A|0.004	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39910134	39910134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDS5A	NM_001100399	exon11	c.C1114A	p.P372T	CTTCTGGATCATG	.	68.0	4.0	92.0	0.0	.	114	.	.	Atlas-SNP
RBM47	54502	hgsc.bcm.edu	hg19	4	40439926	40439926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RBM47	NM_001098634	exon4	c.A985G	p.K329E	CTGCCTTCTGGTA	.	97.0	4.0	135.0	0.0	.	146	.	.	Atlas-SNP
RBM47	54502	hgsc.bcm.edu	hg19	4	40440443	40440443	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	RBM47_ENST00000381793,NS,carcinoma,0,3	RBM47	NM_001098634	exon4	c.C468T	p.G156G	GATCCCGCCGATG	.	40.0	2.0	52.0	0.0	.	146	.	.	Atlas-SNP
NSUN7	79730	hgsc.bcm.edu	hg19	4	40762502	40762502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NSUN7	NM_024677	exon3	c.C350T	p.T117I	CAAGTACCACAAT	.	94.0	4.0	124.0	0.0	.	70	.	.	Atlas-SNP
BEND4	389206	hgsc.bcm.edu	hg19	4	42127600	42127600	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BEND4	NM_001159547	exon4	c.G1146A	p.E382E	ACCTACCTCTGTC	.	78.0	4.0	137.0	0.0	.	67	.	.	Atlas-SNP
DCUN1D4	23142	hgsc.bcm.edu	hg19	4	52740446	52740446	+	Missense_Mutation	SNP	G	G	T	rs142966675		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	DCUN1D4,NS,carcinoma,0,1	DCUN1D4	NM_015115	exon4	c.G146T	p.R49L	GTCTGCGGTCTTG	.	32.0	4.0	39.0	0.0	.	26	.	G|1.000;T|0.000	Atlas-SNP
SPATA18	132671	hgsc.bcm.edu	hg19	4	52917894	52917894	+	Silent	SNP	G	G	A	rs151044158	bycluster;byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SPATA18_ENST00000295213,NS,carcinoma,0,2	SPATA18	NM_145263	exon1	c.G24A	p.L8L	AAGACTGGTCTCA	.	41.0	2.0	60.0	0.0	.	222	.	G|1.000;C|0.000	Atlas-SNP
UBA6	55236	hgsc.bcm.edu	hg19	4	68534270	68534270	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBA6	NM_018227	exon9	c.G792T	p.T264T	CTTACCCGTTATT	.	114.0	5.0	153.0	0.0	.	98	.	.	Atlas-SNP
UGT2A1	10941	hgsc.bcm.edu	hg19	4	70504773	70504773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UGT2A1	NM_001252274	exon3	c.C1189A	p.P397T	GTGCTGGGATTTT	.	100.0	4.0	195.0	0.0	.	131	.	.	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73179418	73179418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ADAMTS3,NS,carcinoma,0,1	ADAMTS3	NM_014243	exon12	c.G1721T	p.R574I	CGTGTTCTGAAAC	.	68.0	3.0	117.0	0.0	.	164	.	.	Atlas-SNP
CCDC158	339965	hgsc.bcm.edu	hg19	4	77255317	77255317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC158	NM_001042784	exon18	c.T2668C	p.S890P	TTGTAGAGTGCTG	.	124.0	5.0	174.0	0.0	.	114	.	.	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	hg19	4	77660862	77660862	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHROOM3	NM_020859	exon5	c.T1536C	p.A512A	GATGGCTACCATT	.	54.0	4.0	93.0	0.0	.	134	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79284759	79284759	+	Missense_Mutation	SNP	G	G	T	rs199918192	bycluster;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRAS1	NM_001166133	exon21	c.G2515T	p.G839W	CTGCTCGGGGACC	.	77.0	4.0	134.0	0.0	.	779	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79455681	79455681	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRAS1	NM_025074	exon71	c.C11004A	p.L3668L	TCAGCTCTGCAAT	.	79.0	4.0	140.0	0.0	.	779	.	.	Atlas-SNP
CDS1	1040	hgsc.bcm.edu	hg19	4	85562071	85562071	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDS1	NM_001263	exon10	c.A960G	p.E320E	GACAGAATGTGAG	.	98.0	4.0	167.0	0.0	.	58	.	.	Atlas-SNP
KLHL8	57563	hgsc.bcm.edu	hg19	4	88098001	88098001	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLHL8	NM_020803	exon6	c.T1116C	p.G372G	ATGTCCACCTACT	.	97.0	4.0	156.0	0.0	.	51	.	.	Atlas-SNP
HERC3	8916	hgsc.bcm.edu	hg19	4	89591124	89591124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HERC3	NM_014606	exon15	c.T1747C	p.F583L	GTACTGTTTAACA	.	81.0	4.0	136.0	0.0	.	82	.	.	Atlas-SNP
NAP1L5	266812	hgsc.bcm.edu	hg19	4	89618533	89618533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAP1L5	NM_153757	exon1	c.G373A	p.G125S	TCTCGCCGGTGAG	.	100.0	4.0	173.0	0.0	.	23	.	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	91230222	91230222	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001145065	exon2	c.T787C	p.L263L	TTAGCCTTGACTG	.	31.0	4.0	46.0	0.0	.	.	.	.	Atlas-SNP
TSPAN5	10098	hgsc.bcm.edu	hg19	4	99408000	99408000	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TSPAN5,NS,carcinoma,0,1	TSPAN5	NM_005723	exon3	c.C168A	p.L56L	GCCGCCGAGATCG	.	92.0	4.0	122.0	0.0	.	32	.	.	Atlas-SNP
DAPP1	27071	hgsc.bcm.edu	hg19	4	100756811	100756811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DAPP1	NM_014395	exon2	c.G133T	p.A45S	CATGCTGCTGAAG	.	100.0	5.0	124.0	0.0	.	47	.	.	Atlas-SNP
TBCK	93627	hgsc.bcm.edu	hg19	4	107154107	107154107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBCK	NM_001163436	exon17	c.G1627A	p.V543M	AATACACAAGATC	.	87.0	4.0	195.0	0.0	.	89	.	.	Atlas-SNP
PAPSS1	9061	hgsc.bcm.edu	hg19	4	108576006	108576006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAPSS1	NM_005443	exon8	c.G946A	p.D316N	CTTTATCTTCATG	.	95.0	4.0	151.0	0.0	.	57	.	.	Atlas-SNP
SEC24B	10427	hgsc.bcm.edu	hg19	4	110384380	110384380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24B	NM_006323	exon2	c.T457C	p.S153P	CCATACTCCTCTT	.	103.0	5.0	140.0	0.0	.	186	.	.	Atlas-SNP
SEC24B	10427	hgsc.bcm.edu	hg19	4	110453794	110453794	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24B	NM_006323	exon21	c.3391-1G>T	.	TTTTCAGGGTGCA	.	49.0	4.0	85.0	0.0	.	186	.	.	Atlas-SNP
AP1AR	55435	hgsc.bcm.edu	hg19	4	113174413	113174413	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP1AR	NM_001128426	exon2	c.132+1G>A	.	ATAGAGGTAAGTA	.	83.0	5.0	126.0	0.0	.	25	.	.	Atlas-SNP
ALPK1	80216	hgsc.bcm.edu	hg19	4	113360847	113360847	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALPK1	NM_001102406	exon14	c.A3357G	p.L1119L	GATTTTAGAGGAC	.	89.0	4.0	148.0	0.0	.	125	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114095576	114095576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANK2	NM_001148	exon2	c.A89G	p.D30G	AGTCTGACAGCAA	.	95.0	4.0	200.0	0.0	.	576	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114279607	114279607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANK2	NM_001148	exon38	c.C9833A	p.P3278Q	CTTCCCCAGAAGA	.	116.0	6.0	146.0	0.0	.	576	.	.	Atlas-SNP
PRSS12	8492	hgsc.bcm.edu	hg19	4	119203115	119203115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRSS12	NM_003619	exon13	c.G2604T	p.W868C	TTTTATCCAAGGT	.	64.0	4.0	81.0	0.0	.	71	.	.	Atlas-SNP
SEC24D	9871	hgsc.bcm.edu	hg19	4	119666159	119666159	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEC24D	NM_014822	exon14	c.A1764G	p.E588E	TGGTGCTTCAGCA	.	170.0	7.0	252.0	0.0	.	96	.	.	Atlas-SNP
MYOZ2	51778	hgsc.bcm.edu	hg19	4	120079175	120079175	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOZ2	NM_016599	exon4	c.247-2A>G	.	AAATACAGCACAG	.	75.0	4.0	146.0	0.0	.	34	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123280777	123280777	+	Missense_Mutation	SNP	G	G	T	rs368229897		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	KIAA1109,colon,carcinoma,0,1	KIAA1109	NM_015312	exon83	c.G14701T	p.D4901Y	CATGACGACAATT	.	70.0	3.0	136.0	0.0	.	424	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126328107	126328107	+	Nonsense_Mutation	SNP	G	G	T	rs200789529	bycluster;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	FAT4_ENST00000394329,caecum,carcinoma,0,2	FAT4	NM_024582	exon3	c.G5380T	p.G1794X	GAATCCGGAGATC	.	94.0	4.0	164.0	1.0	.	1752	.	.	Atlas-SNP
ELF2	1998	hgsc.bcm.edu	hg19	4	139981781	139981781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ELF2	NM_006874	exon6	c.A674C	p.H225P	TATACAAGCCTCT	.	96.0	4.0	154.0	0.0	.	43	.	.	Atlas-SNP
USP38	84640	hgsc.bcm.edu	hg19	4	144135131	144135131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	USP38,NS,carcinoma,0,1	USP38	NM_032557	exon9	c.A2002G	p.I668V	GCCTTCATCTGTG	.	66.0	3.0	92.0	1.0	.	92	.	.	Atlas-SNP
MMAA	166785	hgsc.bcm.edu	hg19	4	146575291	146575291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMAA	NM_172250	exon6	c.C965A	p.P322Q	GGAAACCAAAGGT	.	76.0	4.0	94.0	0.0	.	46	.	.	Atlas-SNP
ZNF827	152485	hgsc.bcm.edu	hg19	4	146744660	146744660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF827	NM_178835	exon8	c.A2297G	p.D766G	AATGTGTCTTCTG	.	83.0	4.0	99.0	0.0	.	102	.	.	Atlas-SNP
PET112	5188	hgsc.bcm.edu	hg19	4	152679945	152679945	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PET112	NM_004564	exon2	c.A306G	p.A102A	TAGAGATGCATCA	.	89.0	4.0	100.0	0.0	.	43	.	.	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	hg19	4	154524546	154524546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0922	NM_001131007	exon24	c.A2731G	p.S911G	AATGCTAGCTCCT	.	171.0	147.0	247.0	0.0	.	214	.	.	Atlas-SNP
KLHL2	11275	hgsc.bcm.edu	hg19	4	166226800	166226800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KLHL2	NM_001161521	exon9	c.G974T	p.R325L	CTATCCGGAGTGT	.	99.0	4.0	152.0	0.0	.	42	.	.	Atlas-SNP
AADAT	51166	hgsc.bcm.edu	hg19	4	170999725	170999725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AADAT	NM_182662	exon5	c.A379G	p.M127V	TGATCATTTCAAA	.	67.0	4.0	102.0	0.0	.	28	.	.	Atlas-SNP
HPGD	3248	hgsc.bcm.edu	hg19	4	175443106	175443106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HPGD	NM_000860	exon2	c.A206G	p.Q69R	AGTTGTTGCTGGT	.	57.0	4.0	85.0	0.0	.	19	.	.	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	hg19	5	1088466	1088466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC12A7	NM_006598	exon5	c.A499G	p.T167A	TGGCGGTCAGCAT	.	122.0	5.0	100.0	0.0	.	97	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5489287	5489287	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0947	NM_015325	exon19	c.A6645G	p.A2215A	GTTAGCAGCCGTG	.	83.0	4.0	76.0	0.0	.	301	.	.	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	hg19	5	38950476	38950476	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RICTOR	NM_152756	exon31	c.A3474T	p.Q1158H	CTCTAATTGTAAT	.	427.0	190.0	309.0	1.0	.	182	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52376343	52376343	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGA2	NM_002203	exon25	c.A2931G	p.V977V	ATAGGTAACAACA	.	99.0	4.0	92.0	0.0	.	211	.	.	Atlas-SNP
IL31RA	133396	hgsc.bcm.edu	hg19	5	55164685	55164685	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IL31RA	NM_001242637	exon3	c.G221A	p.W74X	GCACTTGGAGTCC	.	81.0	4.0	66.0	0.0	.	84	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60628300	60628300	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZSWIM6	NM_020928	exon1	c.G201T	p.P67P	GCTGCCGCCGGGC	.	25.0	17.0	18.0	0.0	.	51	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60628301	60628301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZSWIM6	NM_020928	exon1	c.C202T	p.P68S	CTGCCGCCGGGCA	.	27.0	17.0	18.0	0.0	.	51	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60628341	60628341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZSWIM6	NM_020928	exon1	c.C242T	p.A81V	ACATCGCGGCGCG	.	95.0	4.0	74.0	0.0	.	51	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71492350	71492350	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAP1B	NM_005909	exon5	c.T3168C	p.G1056G	GGCTGGTGGTGCC	.	78.0	4.0	100.0	0.0	.	243	.	.	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	hg19	5	73163834	73163834	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001080479	exon19	c.C2286T	p.T762T	AGGCACCACCTTG	.	93.0	4.0	103.0	0.0	.	.	.	.	Atlas-SNP
PAPD4	167153	hgsc.bcm.edu	hg19	5	78938677	78938677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAPD4	NM_173797	exon8	c.A695G	p.K232R	ATCAGAAGACTGA	.	125.0	5.0	121.0	0.0	.	51	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82849183	82849183	+	Missense_Mutation	SNP	A	A	G	rs13184139	bycluster;byhapmap;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VCAN	NM_004385	exon11	c.A9494G	p.D3165G	TCTCAGATACCGA	.	59.0	4.0	52.0	0.0	.	498	.	A|1.000;|0.000	Atlas-SNP
PAM	5066	hgsc.bcm.edu	hg19	5	102237061	102237061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAM	NM_138822	exon3	c.C212A	p.S71Y	AATAGTCCGATAC	.	382.0	137.0	380.0	1.0	.	180	.	.	Atlas-SNP
SEMA6A	57556	hgsc.bcm.edu	hg19	5	115823894	115823894	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEMA6A	NM_020796	exon10	c.656-2A>G	.	TGGTTCTGTAGAC	.	139.0	6.0	126.0	0.0	.	93	.	.	Atlas-SNP
SRFBP1	153443	hgsc.bcm.edu	hg19	5	121309963	121309963	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRFBP1	NM_152546	exon2	c.C109A	p.R37R	GTTGGCCGACTGA	.	115.0	5.0	135.0	0.0	.	47	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127704892	127704892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBN2	NM_001999	exon16	c.G2231A	p.C744Y	GCAGGGCATGGCT	.	39.0	15.0	42.0	0.0	.	858	.	.	Atlas-SNP
PCDHB11	56125	hgsc.bcm.edu	hg19	5	140579924	140579924	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PCDHB11,NS,NS,0,1	PCDHB11	NM_018931	exon1	c.G577T	p.E193X	TACCCCGAGTTAG	.	262.0	123.0	196.0	0.0	.	162	.	.	Atlas-SNP
PCDHB15	56121	hgsc.bcm.edu	hg19	5	140626597	140626597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCDHB15	NM_018935	exon1	c.C1451G	p.A484G	CCAACGCCCAGGT	.	277.0	125.0	240.0	0.0	.	138	.	.	Atlas-SNP
PCDHGA4	56111	hgsc.bcm.edu	hg19	5	140735864	140735864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCDHGA4	NM_018917	exon1	c.T1097C	p.I366T	CAGTAATTGCACT	.	114.0	45.0	91.0	0.0	.	150	.	.	Atlas-SNP
ARHGEF37	389337	hgsc.bcm.edu	hg19	5	148980735	148980735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGEF37	NM_001001669	exon3	c.G251T	p.R84I	ACAGCAGATTCCT	.	89.0	4.0	85.0	0.0	.	45	.	.	Atlas-SNP
MYOZ3	91977	hgsc.bcm.edu	hg19	5	150056368	150056368	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOZ3	NM_001122853	exon7	c.T687C	p.R229R	CCTCCGTCTCAGA	.	82.0	4.0	77.0	0.0	.	21	.	.	Atlas-SNP
RARS	5917	hgsc.bcm.edu	hg19	5	167945066	167945066	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RARS	NM_002887	exon14	c.T1872C	p.T624T	ACAGACTGGTGAG	.	84.0	5.0	69.0	0.0	.	58	.	.	Atlas-SNP
NPM1	4869	hgsc.bcm.edu	hg19	5	170827199	170827199	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPM1	NM_199185	exon7	c.A567G	p.K189K	AGAAAAAGCGCCA	.	125.0	5.0	137.0	0.0	.	5003	.	.	Atlas-SNP
FAM217A	222826	hgsc.bcm.edu	hg19	6	4070154	4070154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_173563	exon7	c.G303T	p.R101S	GAATTCCCTTTAA	.	100.0	4.0	68.0	0.0	.	.	.	.	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	hg19	6	15497298	15497298	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	JARID2	NM_004973	exon7	c.C1842T	p.I614I	GCACATCCACAAG	.	156.0	67.0	155.0	0.0	.	135	.	.	Atlas-SNP
LRRC16A	55604	hgsc.bcm.edu	hg19	6	25529110	25529110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	LRRC16A,colon,carcinoma,0,1	LRRC16A	NM_001173977	exon24	c.A2056G	p.T686A	ACCAGCACCACCC	.	30.0	3.0	60.0	0.0	.	168	.	.	Atlas-SNP
ZNF311	282890	hgsc.bcm.edu	hg19	6	28967374	28967374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF311	NM_001010877	exon5	c.A200G	p.E67G	ACATCCTCAAATG	.	91.0	4.0	84.0	0.0	.	59	.	.	Atlas-SNP
OR2B3	442184	hgsc.bcm.edu	hg19	6	29054566	29054566	+	Missense_Mutation	SNP	C	C	A	rs369975513	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR2B3	NM_001005226	exon1	c.G460T	p.G154C	AGTTGCCGAAACC	.	102.0	5.0	72.0	0.0	.	44	.	.	Atlas-SNP
TRIM10	10107	hgsc.bcm.edu	hg19	6	30121749	30121749	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIM10	NM_006778	exon7	c.C1443A	p.S481S	TTCTCAGGAGCTC	.	95.0	4.0	96.0	0.0	.	65	.	.	Atlas-SNP
TRIM10	10107	hgsc.bcm.edu	hg19	6	30121896	30121896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIM10	NM_006778	exon7	c.G1296T	p.R432S	AGACACCCTCACC	.	93.0	4.0	72.0	0.0	.	65	.	.	Atlas-SNP
DDR1	780	hgsc.bcm.edu	hg19	6	30862315	30862315	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	DDR1_ENST00000376575,NS,carcinoma,0,6	DDR1	NM_001202523	exon11	c.G1434T	p.T478T	GCTGACGGTTCAC	.	64.0	3.0	57.0	0.0	.	213	.	.	Atlas-SNP
BAG6	7917	hgsc.bcm.edu	hg19	6	31608658	31608658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAG6	NM_004639	exon20	c.G2755A	p.G919R	TCAGTCCCATCAT	.	83.0	4.0	61.0	0.0	.	73	.	.	Atlas-SNP
ANKS1A	23294	hgsc.bcm.edu	hg19	6	35047653	35047653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKS1A	NM_015245	exon16	c.A2492G	p.D831G	TCGCAGACAGACC	.	91.0	4.0	71.0	0.0	.	123	.	.	Atlas-SNP
PNPLA1	285848	hgsc.bcm.edu	hg19	6	36270243	36270243	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PNPLA1	NM_001145717	exon6	c.C1381T	p.Q461X	CAGCCCCAAGGTA	.	79.0	4.0	57.0	0.0	.	92	.	.	Atlas-SNP
TSPO2	222642	hgsc.bcm.edu	hg19	6	41011697	41011697	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TSPO2	NM_001010873	exon4	c.C334T	p.L112L	CTGCTGCTGCTGT	.	68.0	4.0	89.0	0.0	.	26	.	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42573470	42573470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UBR2	NM_001184801	exon6	c.A674G	p.D225G	AGAGTGACACCTA	.	98.0	4.0	94.0	0.0	.	134	.	.	Atlas-SNP
CUL7	9820	hgsc.bcm.edu	hg19	6	43010877	43010877	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CUL7	NM_001168370	exon18	c.C3649A	p.R1217R	GGCCCCGGGTAGC	.	59.0	4.0	47.0	0.0	.	133	.	.	Atlas-SNP
XPO5	57510	hgsc.bcm.edu	hg19	6	43515423	43515423	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XPO5	NM_020750	exon19	c.T2082C	p.A694A	AATGAAAGCATCA	.	103.0	5.0	85.0	0.0	.	79	.	.	Atlas-SNP
TFAP2D	83741	hgsc.bcm.edu	hg19	6	50740456	50740456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFAP2D	NM_172238	exon8	c.C1238T	p.T413I	AACACACTACTCA	.	120.0	43.0	85.0	0.0	.	144	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56346864	56346864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DST	NM_015548	exon71	c.T13646C	p.L4549P	TCAATGAGAGTCC	.	71.0	4.0	30.0	0.0	.	1427	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56358808	56358808	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DST	NM_015548	exon64	c.A12525G	p.K4175K	ACATACTTTCCTT	.	138.0	6.0	121.0	0.0	.	1427	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56436957	56436957	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DST	NM_015548	exon34	c.T5793C	p.L1931L	TTTTTCAAGGACC	.	54.0	4.0	40.0	0.0	.	1427	.	.	Atlas-SNP
KIAA1586	57691	hgsc.bcm.edu	hg19	6	56917800	56917800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA1586	NM_020931	exon4	c.G503T	p.R168L	CAGTTCGGCATTT	.	97.0	4.0	75.0	0.0	.	59	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	69684659	69684659	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAI3	NM_001704	exon9	c.T1530C	p.P510P	AGCACCTTATGAA	.	147.0	6.0	112.0	0.0	.	451	.	.	Atlas-SNP
PRSS35	167681	hgsc.bcm.edu	hg19	6	84234261	84234261	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRSS35	NM_153362	exon2	c.T1101C	p.I367I	AATCATTGCGGTC	.	87.0	4.0	59.0	0.0	.	60	.	.	Atlas-SNP
SPACA1	81833	hgsc.bcm.edu	hg19	6	88768538	88768538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPACA1	NM_030960	exon4	c.C472A	p.Q158K	CAAGACCAAGTGA	.	89.0	5.0	91.0	0.0	.	49	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90368429	90368429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDN1	NM_014611	exon89	c.A14921C	p.E4974A	GAGTGTTCTTCAG	.	314.0	149.0	319.0	1.0	.	478	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90428309	90428309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDN1	NM_014611	exon43	c.A6359G	p.K2120R	TCCACCTTCTCTA	.	78.0	4.0	71.0	0.0	.	478	.	.	Atlas-SNP
SIM1	6492	hgsc.bcm.edu	hg19	6	100898180	100898180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIM1	NM_005068	exon3	c.T311C	p.I104T	TCTGAGATGTACA	.	90.0	4.0	57.0	0.0	.	173	.	.	Atlas-SNP
SMPD2	6610	hgsc.bcm.edu	hg19	6	109764241	109764241	+	Missense_Mutation	SNP	A	A	G	rs145532915	bycluster;byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMPD2	NM_003080	exon8	c.A686G	p.K229R	AGCTGAAGCCATT	.	124.0	6.0	105.0	0.0	.	25	.	A|0.999;T|0.001	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129722435	129722435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LAMA2	NM_000426	exon38	c.A5512G	p.I1838V	AATGACATACTCG	.	97.0	4.0	111.0	0.0	.	481	.	.	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	hg19	6	139135640	139135640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ECT2L	NM_001195037	exon3	c.A79G	p.R27G	CAGGAAAGAGTGG	.	65.0	4.0	66.0	0.0	.	75	.	.	Atlas-SNP
PLAGL1	5325	hgsc.bcm.edu	hg19	6	144263706	144263706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLAGL1	NM_001080953	exon7	c.A247G	p.T83A	CGTGGGTCTGGAG	.	55.0	4.0	43.0	0.0	.	33	.	.	Atlas-SNP
TCP10	6953	hgsc.bcm.edu	hg19	6	167789461	167789461	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCP10	NM_004610	exon6	c.A681G	p.R227R	AGCTCCTCTGGCT	.	120.0	5.0	113.0	0.0	.	35	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	73.0	4.0	58.0	0.0	.	58	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5427683	5427683	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TNRC18	NM_001080495	exon5	c.A1772T	p.Y591F	CCACTGTACTTTA	.	55.0	4.0	70.0	0.0	.	311	.	.	Atlas-SNP
MPP6	51678	hgsc.bcm.edu	hg19	7	24690104	24690104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MPP6	NM_016447	exon6	c.G424T	p.G142C	TCATAGGGTGTGA	.	84.0	5.0	108.0	0.0	.	62	.	.	Atlas-SNP
OSBPL3	26031	hgsc.bcm.edu	hg19	7	24870476	24870476	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OSBPL3	NM_015550	exon16	c.C1795A	p.R599R	CAGCTCGGTAGTA	.	80.0	4.0	119.0	0.0	.	100	.	.	Atlas-SNP
HOXA11	3207	hgsc.bcm.edu	hg19	7	27222608	27222608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HOXA11	NM_005523	exon2	c.A749G	p.K250R	TGGTACTTGGTAT	.	72.0	4.0	102.0	0.0	.	29	.	.	Atlas-SNP
CRHR2	1395	hgsc.bcm.edu	hg19	7	30728894	30728894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRHR2	NM_001202475	exon2	c.G97T	p.G33W	TCTGCCCGGCTGC	.	95.0	4.0	148.0	0.0	.	104	.	.	Atlas-SNP
YAE1D1	57002	hgsc.bcm.edu	hg19	7	39610225	39610225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	YAE1D1	NM_020192	exon2	c.A250G	p.S84G	ACATTGAGGTAAT	.	75.0	4.0	102.0	0.0	.	2	.	.	Atlas-SNP
YKT6	10652	hgsc.bcm.edu	hg19	7	44250697	44250697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	YKT6	NM_006555	exon6	c.A535G	p.T179A	CTGGGAACACAGT	.	99.0	4.0	146.0	0.0	.	12	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48312768	48312768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCA13	NM_152701	exon17	c.A3505G	p.M1169V	TTTGACATGAATG	.	97.0	5.0	113.0	0.0	.	1192	.	.	Atlas-SNP
ZPBP	11055	hgsc.bcm.edu	hg19	7	50070900	50070900	+	Missense_Mutation	SNP	C	C	T	rs368593046		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZPBP,caecum,carcinoma,0,1	ZPBP	NM_007009	exon5	c.G494A	p.R165H	GGCTCACGATAAG	.	35.0	2.0	35.0	0.0	.	65	.	.	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	hg19	7	55224338	55224338	+	Silent	SNP	G	G	T	rs2302536	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	EGFR_ENST00000344576,colon,carcinoma,0,2	EGFR	NM_201283	exon9	c.G1119T	p.P373P	CCTGCCGGTGGCA	.	120.0	5.0	162.0	0.0	.	20426	.	G|0.997;A|0.003	Atlas-SNP
EGFR	1956	hgsc.bcm.edu	hg19	7	55272980	55272980	+	Silent	SNP	C	C	A	rs55796214	bycluster;byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	EGFR,colon,carcinoma,0,1	EGFR	NM_005228	exon28	c.C3303A	p.P1101P	AAGGCCCGCTGGC	.	55.0	3.0	92.0	0.0	.	20426	.	C|1.000;G|0.000	Atlas-SNP
GUSB	2990	hgsc.bcm.edu	hg19	7	65429376	65429376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	GUSB,NS,carcinoma,0,1	GUSB	NM_000181	exon11	c.C1723A	p.Q575K	GTTTTTGATCCAG	.	42.0	2.0	99.0	0.0	.	52	.	.	Atlas-SNP
KCTD7	154881	hgsc.bcm.edu	hg19	7	66098342	66098342	+	Silent	SNP	C	C	T	rs150589535	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCTD7	NM_001167961	exon2	c.C225T	p.T75T	AGACACCATGTTG	.	75.0	4.0	116.0	0.0	.	26	.	C|1.000;G|0.000	Atlas-SNP
SEMA3C	10512	hgsc.bcm.edu	hg19	7	80433423	80433423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEMA3C	NM_006379	exon8	c.C800A	p.P267H	CTTACAGGACATA	.	120.0	5.0	154.0	0.0	.	106	.	.	Atlas-SNP
GRM3	2913	hgsc.bcm.edu	hg19	7	86415661	86415661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRM3	NM_000840	exon3	c.G553C	p.D185H	CGCTATGATTACT	.	224.0	89.0	294.0	0.0	.	237	.	.	Atlas-SNP
CDK14	5218	hgsc.bcm.edu	hg19	7	90747440	90747440	+	Missense_Mutation	SNP	G	G	T	rs74839397	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDK14	NM_012395	exon13	c.G1301T	p.R434L	GCATGCGGGCCTT	.	93.0	4.0	115.0	0.0	.	153	.	G|0.999;A|0.001	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	hg19	7	91712764	91712764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AKAP9	NM_005751	exon33	c.C8441A	p.S2814X	GTTCCTCAGAAGA	.	73.0	4.0	118.0	0.0	.	788	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94043018	94043018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL1A2	NM_000089	exon27	c.A1574G	p.D525G	GTCCTGATGGAAA	.	59.0	4.0	119.0	0.0	.	240	.	.	Atlas-SNP
PPP1R9A	55607	hgsc.bcm.edu	hg19	7	94540701	94540701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PPP1R9A	NM_017650	exon2	c.G1276T	p.D426Y	GAGGAAGATAGTG	.	92.0	4.0	127.0	0.0	.	264	.	.	Atlas-SNP
SLC25A13	10165	hgsc.bcm.edu	hg19	7	95820553	95820553	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC25A13	NM_001160210	exon7	c.G622T	p.G208X	TACCTCCAGCAGC	.	74.0	4.0	91.0	0.0	.	131	.	.	Atlas-SNP
BHLHA15	168620	hgsc.bcm.edu	hg19	7	97842082	97842082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BHLHA15	NM_177455	exon1	c.A461G	p.Q154R	ACTACCAGCAGCA	.	73.0	4.0	100.0	0.0	.	11	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98545947	98545947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRRAP	NM_001244580	exon33	c.G4631T	p.R1544L	CGGAGCGGGCGAT	.	99.0	4.0	112.0	0.0	.	863	.	.	Atlas-SNP
SMURF1	57154	hgsc.bcm.edu	hg19	7	98645414	98645414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SMURF1,colon,carcinoma,0,3	SMURF1	NM_020429	exon11	c.G1123A	p.E375K	CTCTTTCGTATCT	.	67.0	3.0	67.0	0.0	.	58	.	.	Atlas-SNP
KPNA7	402569	hgsc.bcm.edu	hg19	7	98792707	98792707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KPNA7	NM_001145715	exon4	c.T539C	p.L180P	TTACCAAGAGCCC	.	73.0	4.0	129.0	0.0	.	31	.	.	Atlas-SNP
ATP5J2-PTCD1	100526740	hgsc.bcm.edu	hg19	7	99032620	99032620	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PTCD1,colon,carcinoma,0,1	.	NM_001198879	exon3	c.C393T	p.D131D	CTCCTCGTCTTCT	.	83.0	4.0	114.0	0.0	.	.	.	.	Atlas-SNP
ZNF655	79027	hgsc.bcm.edu	hg19	7	99170201	99170201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF655	NM_001085368	exon4	c.A575G	p.D192G	ATACCGATGACAA	.	44.0	5.0	60.0	0.0	.	75	.	.	Atlas-SNP
MCM7	4176	hgsc.bcm.edu	hg19	7	99691801	99691801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MCM7	NM_005916	exon13	c.G1843A	p.A615T	CCAGAGCAGTGGA	.	75.0	4.0	91.0	0.0	.	136	.	.	Atlas-SNP
AP4M1	9179	hgsc.bcm.edu	hg19	7	99701748	99701748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP4M1	NM_004722	exon7	c.G577T	p.E193X	GTGGTCGAGAGAT	.	84.0	4.0	121.0	0.0	.	39	.	.	Atlas-SNP
PILRA	29992	hgsc.bcm.edu	hg19	7	99971978	99971978	+	Silent	SNP	C	C	A	rs141936238	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PILRA	NM_013439	exon2	c.C376A	p.R126R	TTCTGCCGAGTTG	.	89.0	4.0	98.0	0.0	.	28	.	C|1.000;G|0.000	Atlas-SNP
TFR2	7036	hgsc.bcm.edu	hg19	7	100226878	100226878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TFR2	NM_003227	exon10	c.A1388G	p.N463S	TTACCGTTGCTCA	.	30.0	4.0	62.0	0.0	.	53	.	.	Atlas-SNP
LRRC17	10234	hgsc.bcm.edu	hg19	7	102584705	102584705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC17	NM_001031692	exon4	c.A977G	p.N326S	CAAACAACAGTCT	.	78.0	33.0	110.0	0.0	.	45	.	.	Atlas-SNP
ORC5	5001	hgsc.bcm.edu	hg19	7	103808900	103808900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ORC5	NM_181747	exon9	c.A898G	p.T300A	TAACTGTCTCAAT	.	80.0	4.0	112.0	0.0	.	48	.	.	Atlas-SNP
CDHR3	222256	hgsc.bcm.edu	hg19	7	105621574	105621574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDHR3	NM_152750	exon3	c.C410A	p.A137E	ACTTGGCAGAAGG	.	83.0	4.0	128.0	0.0	.	153	.	.	Atlas-SNP
MDFIC	29969	hgsc.bcm.edu	hg19	7	114619590	114619590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MDFIC	NM_199072	exon4	c.A574G	p.T192A	CTTCAGACTTCAG	.	87.0	4.0	140.0	0.0	.	30	.	.	Atlas-SNP
ST7	7982	hgsc.bcm.edu	hg19	7	116759658	116759658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ST7	NM_018412	exon3	c.T278C	p.I93T	CATTCATTGAACA	.	100.0	4.0	133.0	0.0	.	64	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128477572	128477572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FLNC	NM_001127487	exon4	c.A820G	p.N274D	CAGCTGAACCCCA	.	69.0	4.0	121.0	0.0	.	339	.	.	Atlas-SNP
LRGUK	136332	hgsc.bcm.edu	hg19	7	133876488	133876488	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRGUK	NM_144648	exon12	c.T1416C	p.D472D	TTTTGATGAAATG	.	87.0	4.0	154.0	0.0	.	113	.	.	Atlas-SNP
ZC3HAV1L	92092	hgsc.bcm.edu	hg19	7	138719329	138719329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3HAV1L	NM_080660	exon2	c.G461T	p.R154L	AGGATCCGAAGCT	.	80.0	4.0	93.0	0.0	.	15	.	.	Atlas-SNP
SLC37A3	84255	hgsc.bcm.edu	hg19	7	140069457	140069457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC37A3	NM_207113	exon4	c.C224A	p.P75H	GCACTGGGGAACA	.	47.0	4.0	44.0	0.0	.	80	.	.	Atlas-SNP
ADCK2	90956	hgsc.bcm.edu	hg19	7	140373468	140373468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADCK2	NM_052853	exon1	c.T338C	p.L113P	TCCCCCTCCTACT	.	68.0	4.0	83.0	0.0	.	37	.	.	Atlas-SNP
WEE2	494551	hgsc.bcm.edu	hg19	7	141414139	141414139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WEE2	NM_001105558	exon2	c.T473C	p.F158S	ATCCCTTCACTCC	.	43.0	4.0	83.0	0.0	.	59	.	.	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	hg19	7	143016896	143016896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLCN1	NM_000083	exon2	c.G229A	p.G77R	GACATAGGGATGC	.	88.0	39.0	91.0	0.0	.	141	.	.	Atlas-SNP
NOBOX	135935	hgsc.bcm.edu	hg19	7	144096261	144096261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NOBOX	NM_001080413	exon8	c.G1251A	p.M417I	CAGCAGCATGGGG	.	61.0	4.0	99.0	0.0	.	130	.	.	Atlas-SNP
GIMAP8	155038	hgsc.bcm.edu	hg19	7	150171349	150171349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GIMAP8	NM_175571	exon4	c.A932G	p.N311S	TAAAGAACATTGA	.	94.0	4.0	85.0	0.0	.	136	.	.	Atlas-SNP
ASIC3	9311	hgsc.bcm.edu	hg19	7	150747908	150747908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_020322	exon4	c.C877G	p.P293A	TATGAGCCAGAGC	.	66.0	15.0	64.0	0.0	.	.	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2949044	2949044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSMD1	NM_033225	exon48	c.T7279C	p.Y2427H	CTGCATAGCGAAT	.	76.0	4.0	92.0	0.0	.	1469	.	.	Atlas-SNP
TNKS	8658	hgsc.bcm.edu	hg19	8	9623750	9623750	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TNKS	NM_003747	exon25	c.T3555C	p.G1185G	TCTAGGTTCTCCT	.	71.0	4.0	61.0	0.0	.	198	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10469337	10469337	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RP1L1	NM_178857	exon4	c.T2271C	p.A757A	AGAGGGAGCGTTG	.	125.0	5.0	105.0	0.0	.	453	.	.	Atlas-SNP
WHSC1L1	54904	hgsc.bcm.edu	hg19	8	38173035	38173035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WHSC1L1	NM_023034	exon11	c.C2014A	p.P672T	CTGAAGGGCTATC	.	95.0	4.0	83.0	0.0	.	137	.	.	Atlas-SNP
ADAM18	8749	hgsc.bcm.edu	hg19	8	39495084	39495084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM18	NM_014237	exon9	c.T689C	p.I230T	CTGTTATACTGTC	.	182.0	81.0	173.0	0.0	.	169	.	.	Atlas-SNP
HOOK3	84376	hgsc.bcm.edu	hg19	8	42819578	42819578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HOOK3	NM_032410	exon9	c.T740C	p.L247P	TGCAGCTCCAGAC	.	91.0	4.0	86.0	0.0	.	71	.	.	Atlas-SNP
HGSNAT	138050	hgsc.bcm.edu	hg19	8	43054663	43054663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HGSNAT	NM_152419	exon18	c.T1859C	p.V620A	TCTGGGTGCTCAT	.	87.0	4.0	70.0	0.0	.	85	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52359722	52359722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PXDNL_ENST00000356297,NS,carcinoma,0,1	PXDNL	NM_144651	exon12	c.G1367T	p.G456V	TGCCCTCCTGCAA	.	68.0	3.0	62.0	0.0	.	414	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61757431	61757431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD7	NM_017780	exon22	c.G4859T	p.R1620L	GGGGACGGTGGAC	.	110.0	5.0	70.0	0.0	.	534	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61765453	61765453	+	Missense_Mutation	SNP	C	C	A	rs192260844	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD7	NM_017780	exon31	c.C6169A	p.R2057S	CTGTACCGCATTG	.	72.0	4.0	57.0	0.0	.	534	.	C|1.000;T|0.000	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77618142	77618142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFHX4	NM_024721	exon2	c.G1819T	p.G607C	GGAGACGGCTCAC	.	78.0	4.0	51.0	0.0	.	878	.	.	Atlas-SNP
SLC7A13	157724	hgsc.bcm.edu	hg19	8	87226642	87226642	+	Silent	SNP	C	C	T	rs202114931	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SLC7A13,NS,carcinoma,0,2	SLC7A13	NM_138817	exon4	c.G1413A	p.X471X	CGACATCTATTCC	.	20.0	3.0	5.0	1.0	.	97	.	.	Atlas-SNP
WWP1	11059	hgsc.bcm.edu	hg19	8	87479044	87479044	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WWP1	NM_007013	exon25	c.A2691G	p.P897P	TCTACCACCATAT	.	83.0	4.0	90.0	0.0	.	97	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100654256	100654256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	VPS13B	NM_017890	exon34	c.A5513G	p.D1838G	CCTTTGACATATT	.	64.0	4.0	51.0	0.0	.	811	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113331157	113331157	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CSMD3_ENST00000343508,NS,carcinoma,0,2	CSMD3	NM_198123	exon47	c.T7269C	p.C2423C	TGGAAGACACTGA	.	74.0	3.0	80.0	0.0	.	2325	.	.	Atlas-SNP
TAF2	6873	hgsc.bcm.edu	hg19	8	120793297	120793297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TAF2	NM_003184	exon17	c.A2249G	p.Q750R	ACCTTCTGTAGAA	.	119.0	5.0	123.0	0.0	.	204	.	.	Atlas-SNP
DEPTOR	64798	hgsc.bcm.edu	hg19	8	120977517	120977517	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEPTOR	NM_022783	exon4	c.A471G	p.E157E	GGAGGAAGGGGTC	.	86.0	4.0	72.0	0.0	.	41	.	.	Atlas-SNP
MTBP	27085	hgsc.bcm.edu	hg19	8	121528368	121528368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	MTBP,caecum,carcinoma,0,1	MTBP	NM_022045	exon18	c.G2183T	p.R728L	AACTTCGAACTGA	.	100.0	4.0	106.0	0.0	.	77	.	.	Atlas-SNP
ANXA13	312	hgsc.bcm.edu	hg19	8	124693533	124693533	+	Missense_Mutation	SNP	G	G	T	rs201212750	by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANXA13	NM_001003954	exon12	c.C1021A	p.R341S	CTGAGCGAACCAT	.	124.0	5.0	153.0	0.0	.	38	.	G|1.000;A|0.000	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	124989814	124989814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FER1L6	NM_001039112	exon10	c.T1028C	p.L343P	TTGACCTGAAGAA	.	124.0	5.0	143.0	0.0	.	268	.	.	Atlas-SNP
KIAA0196	9897	hgsc.bcm.edu	hg19	8	126040930	126040930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0196	NM_014846	exon28	c.C3355A	p.P1119T	CTGCAGGAATTTC	.	99.0	4.0	61.0	0.0	.	90	.	.	Atlas-SNP
TRAPPC9	83696	hgsc.bcm.edu	hg19	8	141449296	141449296	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRAPPC9	NM_031466	exon3	c.A879G	p.R293R	GTAATGTCTAGAA	.	93.0	4.0	57.0	0.0	.	114	.	.	Atlas-SNP
AGO2	27161	hgsc.bcm.edu	hg19	8	141542567	141542567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_012154	exon18	c.C2419A	p.H807N	CCAGGTGAGCGTA	.	95.0	4.0	72.0	0.0	.	.	.	.	Atlas-SNP
SLC45A4	57210	hgsc.bcm.edu	hg19	8	142228278	142228278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC45A4	NM_001080431	exon4	c.G1308T	p.E436D	CTCCCCCTCCTCA	.	85.0	33.0	71.0	0.0	.	71	.	.	Atlas-SNP
GPIHBP1	338328	hgsc.bcm.edu	hg19	8	144296897	144296897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPIHBP1	NM_178172	exon3	c.G191T	p.R64L	TGCTGCGGTGCTA	.	122.0	6.0	94.0	0.0	.	12	.	.	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	304685	304685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK8	NM_203447	exon5	c.G509A	p.C170Y	TGGAGTGCAGTGA	.	81.0	4.0	62.0	0.0	.	401	.	.	Atlas-SNP
KIAA0020	9933	hgsc.bcm.edu	hg19	9	2807906	2807906	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA0020	NM_014878	exon18	c.1724-2A>G	.	ACAACCTGTAAAA	.	73.0	4.0	42.0	0.0	.	56	.	.	Atlas-SNP
DNAI1	27019	hgsc.bcm.edu	hg19	9	34506838	34506838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAI1	NM_012144	exon13	c.C1277T	p.A426V	GCTCAGCCAAGTC	.	95.0	4.0	73.0	0.0	.	72	.	.	Atlas-SNP
DNAJB5	25822	hgsc.bcm.edu	hg19	9	34990809	34990809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAJB5	NM_001135004	exon2	c.G308T	p.R103L	AGTTTCGGTAAGT	.	59.0	4.0	69.0	0.0	.	69	.	.	Atlas-SNP
CCIN	881	hgsc.bcm.edu	hg19	9	36170794	36170794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCIN	NM_005893	exon1	c.G1295T	p.R432L	CTGGACGGTGCTT	.	92.0	5.0	86.0	0.0	.	56	.	.	Atlas-SNP
MAMDC2	256691	hgsc.bcm.edu	hg19	9	72659502	72659502	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAMDC2	NM_153267	exon2	c.C37T	p.L13L	GCAGCCCTGCAGC	.	99.0	4.0	86.0	0.0	.	55	.	.	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	hg19	9	73235023	73235023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TRPM3_ENST00000423814,NS,carcinoma,0,2	TRPM3	NM_001007471	exon15	c.G2062T	p.D688Y	AAATGTCGTCAAC	.	82.0	4.0	73.0	0.0	.	700	.	.	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	hg19	9	90500432	90500432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_178828	exon4	c.C1030T	p.P344S	GGAGACCCCACAC	.	94.0	4.0	76.0	0.0	.	.	.	.	Atlas-SNP
PHF2	5253	hgsc.bcm.edu	hg19	9	96428080	96428080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF2	NM_005392	exon15	c.G2050T	p.G684C	GATGACGGTGAGC	.	106.0	5.0	98.0	0.0	.	113	.	.	Atlas-SNP
MSANTD3-TMEFF1	100526694	hgsc.bcm.edu	hg19	9	103312401	103312401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001198812	exon7	c.G956A	p.G319E	TGTTGGGAAAGAA	.	63.0	4.0	65.0	0.0	.	.	.	.	Atlas-SNP
LPPR1	0	hgsc.bcm.edu	hg19	9	104079680	104079680	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_207299	exon7	c.C847T	p.Q283X	GGAACGCAAGGAT	.	68.0	4.0	97.0	0.0	.	.	.	.	Atlas-SNP
BAAT	570	hgsc.bcm.edu	hg19	9	104130448	104130448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAAT	NM_001127610	exon3	c.T623C	p.L208S	TATTCCAAATCTG	.	142.0	65.0	118.0	0.0	.	52	.	.	Atlas-SNP
ZNF462	58499	hgsc.bcm.edu	hg19	9	109689751	109689751	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF462	NM_021224	exon3	c.T3558C	p.P1186P	TGGCCCTCCTGTG	.	85.0	4.0	55.0	0.0	.	322	.	.	Atlas-SNP
PALM2-AKAP2	445815	hgsc.bcm.edu	hg19	9	112900259	112900259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PALM2-AKAP2	NM_007203	exon8	c.C2435A	p.A812D	AACAAGCCATAGC	.	90.0	4.0	73.0	0.0	.	117	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113169106	113169106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SVEP1	NM_153366	exon38	c.G8774A	p.G2925D	GGAGCACCGTGCA	.	81.0	4.0	70.0	0.0	.	326	.	.	Atlas-SNP
TNC	3371	hgsc.bcm.edu	hg19	9	117853209	117853209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TNC	NM_002160	exon2	c.G89T	p.R30L	TTGTGCCGGATGA	.	94.0	4.0	71.0	0.0	.	282	.	.	Atlas-SNP
OR1K1	392392	hgsc.bcm.edu	hg19	9	125562726	125562726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR1K1	NM_080859	exon1	c.G325T	p.G109W	GCCCTGGGGGTAA	.	64.0	4.0	51.0	0.0	.	34	.	.	Atlas-SNP
CRB2	286204	hgsc.bcm.edu	hg19	9	126133645	126133645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CRB2	NM_173689	exon8	c.G2224T	p.G742W	GACCTGGGGCAGC	.	143.0	6.0	124.0	0.0	.	86	.	.	Atlas-SNP
WDR38	401551	hgsc.bcm.edu	hg19	9	127619818	127619818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WDR38	NM_001276374	exon9	c.C857A	p.P286Q	TCACCCCAGATGG	.	108.0	5.0	125.0	0.0	.	21	.	.	Atlas-SNP
CIZ1	25792	hgsc.bcm.edu	hg19	9	130947925	130947925	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CIZ1	NM_001257975	exon5	c.T579C	p.P193P	AACAGGAGGAGGT	.	119.0	5.0	125.0	0.0	.	75	.	.	Atlas-SNP
GLE1	2733	hgsc.bcm.edu	hg19	9	131277857	131277857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GLE1	NM_001499	exon3	c.G371T	p.R124L	CCTCACGGGGGAT	.	51.0	4.0	93.0	0.0	.	42	.	.	Atlas-SNP
GPR107	57720	hgsc.bcm.edu	hg19	9	132897357	132897357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPR107	NM_001136557	exon20	c.A1760G	p.N587S	TGACCAACGGCTC	.	71.0	5.0	46.0	0.0	.	30	.	.	Atlas-SNP
TTF1	7270	hgsc.bcm.edu	hg19	9	135277238	135277238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTF1	NM_007344	exon2	c.C971A	p.P324Q	GGTGCTGGTATTC	.	98.0	4.0	69.0	0.0	.	82	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138594134	138594134	+	Silent	SNP	G	G	T	rs139034501	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCNT1	NM_001272003	exon1	c.G30T	p.P10P	GACCCCGGGGGGC	.	95.0	4.0	96.0	0.0	.	139	.	G|0.996;A|0.004	Atlas-SNP
FBXW5	54461	hgsc.bcm.edu	hg19	9	139836076	139836076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBXW5	NM_018998	exon7	c.G1157T	p.R386L	GAGCCCCGGCCCT	.	124.0	5.0	97.0	0.0	.	36	.	.	Atlas-SNP
NDOR1	27158	hgsc.bcm.edu	hg19	9	140109380	140109380	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NDOR1	NM_001144026	exon8	c.G975A	p.L325L	TGAGCTGGAGCGG	.	98.0	4.0	56.0	0.0	.	71	.	.	Atlas-SNP
TOR4A	54863	hgsc.bcm.edu	hg19	9	140173890	140173890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_017723	exon2	c.T749C	p.V250A	CCGACGTGGTGGC	.	62.0	4.0	50.0	0.0	.	.	.	.	Atlas-SNP
PITRM1	10531	hgsc.bcm.edu	hg19	10	3208566	3208566	+	Silent	SNP	C	C	T	rs114690446	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PITRM1,colon,carcinoma,-1,3	PITRM1	NM_014889	exon4	c.G273A	p.Q91Q	ACGGAACTGCACG	.	54.0	6.0	26.0	1.0	.	109	.	.	Atlas-SNP
FAM188A	80013	hgsc.bcm.edu	hg19	10	15883432	15883432	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM188A	NM_024948	exon4	c.A402G	p.E134E	AGAATGTTCCACT	.	90.0	6.0	71.0	0.0	.	44	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17142090	17142090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CUBN,NS,carcinoma,0,1	CUBN	NM_001081	exon14	c.G1679C	p.S560T	TTGTCACTGCTGA	.	264.0	116.0	205.0	0.0	.	515	.	.	Atlas-SNP
CAMK2G	818	hgsc.bcm.edu	hg19	10	75607747	75607747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CAMK2G	NM_172170	exon9	c.A695G	p.D232G	CTTACATCATAGG	.	102.0	5.0	70.0	0.0	.	79	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76790465	76790465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_012330	exon18	c.G5883A	p.M1961I	AACGATGCAAAGA	.	84.0	4.0	48.0	0.0	.	.	.	.	Atlas-SNP
COMTD1	118881	hgsc.bcm.edu	hg19	10	76995129	76995129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COMTD1	NM_144589	exon3	c.T224C	p.L75P	AGGGTCAGCTGCG	.	38.0	4.0	28.0	0.0	.	6	.	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	hg19	10	79614037	79614037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLG5	NM_004747	exon4	c.A628G	p.T210A	CGTTGGTGTGCTG	.	98.0	4.0	71.0	0.0	.	154	.	.	Atlas-SNP
LIPA	3988	hgsc.bcm.edu	hg19	10	90974647	90974647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIPA	NM_000235	exon10	c.G1138T	p.G380C	CCAGGCCCCAAAT	.	95.0	4.0	57.0	0.0	.	29	.	.	Atlas-SNP
CEP55	55165	hgsc.bcm.edu	hg19	10	95275260	95275260	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP55	NM_018131	exon5	c.G627T	p.T209T	GAAAACGGAAACA	.	148.0	6.0	111.0	0.0	.	35	.	.	Atlas-SNP
C10orf12	26148	hgsc.bcm.edu	hg19	10	98741962	98741962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C10orf12	NM_015652	exon1	c.T815C	p.V272A	GAGACGTTTCACC	.	108.0	6.0	86.0	0.0	.	94	.	.	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	hg19	10	99150246	99150246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RRP12	NM_015179	exon6	c.G687T	p.W229C	GTAGCCCCAGGCC	.	57.0	4.0	52.0	0.0	.	97	.	.	Atlas-SNP
SCD	6319	hgsc.bcm.edu	hg19	10	102112216	102112216	+	Missense_Mutation	SNP	G	G	T	rs145182376	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCD	NM_005063	exon3	c.G404T	p.R135L	CCCTACGGCTCTT	.	97.0	4.0	68.0	0.0	.	25	.	G|1.000;A|0.000	Atlas-SNP
BTRC	8945	hgsc.bcm.edu	hg19	10	103281409	103281409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BTRC	NM_033637	exon5	c.A338T	p.N113I	TTGCCAATGGCAC	.	148.0	53.0	100.0	0.0	.	64	.	.	Atlas-SNP
CYP17A1	1586	hgsc.bcm.edu	hg19	10	104590471	104590471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP17A1	NM_000102	exon8	c.G1515T	p.E505D	GCTACCCTCAGCC	.	92.0	4.0	73.0	0.0	.	48	.	.	Atlas-SNP
GFRA1	2674	hgsc.bcm.edu	hg19	10	117853332	117853332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GFRA1	NM_005264	exon8	c.C896A	p.P299H	TAGTTGGGGGTCA	.	123.0	5.0	101.0	0.0	.	107	.	.	Atlas-SNP
MCMBP	79892	hgsc.bcm.edu	hg19	10	121608999	121608999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MCMBP	NM_024834	exon7	c.T664C	p.S222P	GAGAAGACAAGTT	.	94.0	4.0	51.0	0.0	.	49	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123845759	123845759	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC2	NM_206862	exon4	c.A3744G	p.A1248A	AGGAGCAGAAGAC	.	84.0	4.0	64.0	0.0	.	271	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123848021	123848021	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC2	NM_206862	exon5	c.T5488C	p.L1830L	TCCATGTTACCTT	.	143.0	6.0	100.0	0.0	.	271	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123996925	123996925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TACC2	NM_206862	exon17	c.C8143A	p.P2715T	GCTCACCCAACAG	.	87.0	4.0	52.0	0.0	.	271	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135025267	135025267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	KNDC1,NS,carcinoma,0,1	KNDC1	NM_152643	exon23	c.G4141T	p.G1381C	CCTCGCGGCACAG	.	89.0	4.0	44.0	0.0	.	155	.	.	Atlas-SNP
ATHL1	80162	hgsc.bcm.edu	hg19	11	292027	292027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATHL1	NM_025092	exon5	c.G958A	p.A320T	GCCAGGGCCATCC	.	55.0	4.0	78.0	0.0	.	88	.	.	Atlas-SNP
B4GALNT4	338707	hgsc.bcm.edu	hg19	11	377296	377296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	B4GALNT4	NM_178537	exon14	c.T2173C	p.Y725H	GCTCAGTACATGG	.	91.0	4.0	79.0	0.0	.	83	.	.	Atlas-SNP
SIGIRR	59307	hgsc.bcm.edu	hg19	11	407512	407512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIGIRR	NM_001135053	exon6	c.T538C	p.F180L	TCACGAACTTGCG	.	167.0	7.0	132.0	0.0	.	22	.	.	Atlas-SNP
LRRC56	115399	hgsc.bcm.edu	hg19	11	540775	540775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC56	NM_198075	exon4	c.C91T	p.P31S	CACAACCCCTGCC	.	69.0	4.0	67.0	0.0	.	23	.	.	Atlas-SNP
TH	7054	hgsc.bcm.edu	hg19	11	2190970	2190970	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TH	NM_199292	exon3	c.G315A	p.E105E	CTTCTCCTCAAAG	.	155.0	86.0	197.0	0.0	.	43	.	.	Atlas-SNP
ART1	417	hgsc.bcm.edu	hg19	11	3681383	3681383	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ART1	NM_004314	exon3	c.C634T	p.Q212X	GCCCAGCAGTTTG	.	138.0	6.0	124.0	0.0	.	21	.	.	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	hg19	11	3716712	3716712	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUP98	NM_016320	exon26	c.A4134G	p.R1378R	GCGCAGTCTCTCA	.	71.0	4.0	57.0	0.0	.	149	.	.	Atlas-SNP
UBQLN3	50613	hgsc.bcm.edu	hg19	11	5530073	5530073	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	UBQLN3,right_lower_lobe,carcinoma,+1,1	UBQLN3	NM_017481	exon2	c.G716C	p.R239P	AGCACCCGGTCCT	.	98.0	4.0	122.0	1.0	.	107	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6591490	6591490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNHD1	NM_144666	exon41	c.C12969A	p.Y4323X	TTTCTACGGGGGT	.	97.0	4.0	96.0	0.0	.	198	.	.	Atlas-SNP
PLEKHA7	144100	hgsc.bcm.edu	hg19	11	16838667	16838667	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHA7	NM_175058	exon11	c.C1546A	p.R516R	CATCCCGGTGCGC	.	100.0	4.0	77.0	0.0	.	120	.	.	Atlas-SNP
ABCC8	6833	hgsc.bcm.edu	hg19	11	17428527	17428527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ABCC8	NM_000352	exon25	c.A3070G	p.M1024V	GGACCATGTGCTT	.	95.0	4.0	151.0	0.0	.	170	.	.	Atlas-SNP
FANCF	2188	hgsc.bcm.edu	hg19	11	22646564	22646564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FANCF	NM_022725	exon1	c.A793G	p.S265G	GGCGGCTAGTCAC	.	79.0	4.0	103.0	0.0	.	24	.	.	Atlas-SNP
LIN7C	55327	hgsc.bcm.edu	hg19	11	27523454	27523454	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	LIN7C,NS,carcinoma,0,1	LIN7C	NM_018362	exon2	c.A51G	p.A17A	TTCAATTGCTCTA	.	87.0	28.0	94.0	0.0	.	24	.	.	Atlas-SNP
DCDC5	100506627	hgsc.bcm.edu	hg19	11	30938424	30938424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DCDC5	NM_020869	exon7	c.A766G	p.K256E	TGTGTTTCTTCTG	.	146.0	6.0	152.0	0.0	.	137	.	.	Atlas-SNP
RCN1	5954	hgsc.bcm.edu	hg19	11	32125951	32125951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RCN1	NM_002901	exon6	c.A929G	p.N310S	ACTGGAACATGTT	.	115.0	5.0	139.0	0.0	.	37	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33573676	33573676	+	Silent	SNP	G	G	T	rs372452571	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	C11orf41_ENST00000321505,NS,carcinoma,0,2	.	NM_012194	exon5	c.G2853T	p.A951A	CCAAGCGGACAAC	.	75.0	4.0	103.0	0.0	.	.	.	.	Atlas-SNP
LMO2	4005	hgsc.bcm.edu	hg19	11	33890910	33890910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LMO2	NM_005574	exon4	c.A230G	p.K77R	AGGCTCTTCCTTT	.	45.0	4.0	41.0	0.0	.	21	.	.	Atlas-SNP
EHF	26298	hgsc.bcm.edu	hg19	11	34673334	34673334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EHF	NM_001206616	exon6	c.A592G	p.T198A	ACAACCACCAGTC	.	57.0	4.0	85.0	0.0	.	38	.	.	Atlas-SNP
PHF21A	51317	hgsc.bcm.edu	hg19	11	46098351	46098351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF21A	NM_016621	exon5	c.A107G	p.Q36R	TGAAGCTGTTTCT	.	89.0	4.0	105.0	0.0	.	107	.	.	Atlas-SNP
OR10AG1	282770	hgsc.bcm.edu	hg19	11	55735603	55735603	+	Missense_Mutation	SNP	G	G	T	rs150679428	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	OR10AG1,NS,carcinoma,+1,2	OR10AG1	NM_001005491	exon1	c.C337A	p.R113S	CGTAGCGGTCATA	.	88.0	4.0	92.0	1.0	.	100	.	G|1.000;A|0.000	Atlas-SNP
OR9G4	283189	hgsc.bcm.edu	hg19	11	56511197	56511197	+	Missense_Mutation	SNP	C	C	A	rs367701319		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	OR9G4,NS,carcinoma,0,1	OR9G4	NM_001005284	exon1	c.G91T	p.G31C	AGAAACCCAACAA	.	95.0	4.0	138.0	0.0	.	73	.	.	Atlas-SNP
YPEL4	219539	hgsc.bcm.edu	hg19	11	57413467	57413467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	YPEL4	NM_145008	exon5	c.A371G	p.N124S	CAGCCGTTGTCCT	.	75.0	4.0	64.0	0.0	.	5	.	.	Atlas-SNP
FAM111B	374393	hgsc.bcm.edu	hg19	11	58877115	58877115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM111B	NM_198947	exon3	c.C17A	p.T6N	TGAAGACTGAAGA	.	64.0	4.0	61.0	0.0	.	84	.	.	Atlas-SNP
PATL1	219988	hgsc.bcm.edu	hg19	11	59406813	59406813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PATL1	NM_152716	exon17	c.A2093G	p.D698G	TGTAGGTCTTCAC	.	91.0	4.0	109.0	0.0	.	92	.	.	Atlas-SNP
EML3	256364	hgsc.bcm.edu	hg19	11	62370651	62370651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EML3	NM_153265	exon20	c.T2326C	p.Y776H	AGGTGTAGGTAGC	.	62.0	4.0	51.0	0.0	.	61	.	.	Atlas-SNP
EML3	256364	hgsc.bcm.edu	hg19	11	62375157	62375157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EML3	NM_153265	exon11	c.G1343T	p.R448L	TGTTTCCGGGTAA	.	90.0	4.0	102.0	0.0	.	61	.	.	Atlas-SNP
MARK2	2011	hgsc.bcm.edu	hg19	11	63666539	63666539	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARK2	NM_001163296	exon7	c.C490T	p.Q164X	GCTGTGCAGTACT	.	103.0	5.0	93.0	0.0	.	91	.	.	Atlas-SNP
SNX15	29907	hgsc.bcm.edu	hg19	11	64802421	64802421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNX15	NM_147777	exon4	c.A359G	p.K120R	AGCTCAAGGAGTT	.	105.0	5.0	89.0	0.0	.	35	.	.	Atlas-SNP
SCYL1	57410	hgsc.bcm.edu	hg19	11	65299085	65299085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCYL1	NM_020680	exon8	c.G1047T	p.K349N	GCAGAAGATCATC	.	89.0	4.0	69.0	0.0	.	76	.	.	Atlas-SNP
TMEM151A	256472	hgsc.bcm.edu	hg19	11	66062755	66062755	+	Silent	SNP	C	C	A	rs377003155	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM151A	NM_153266	exon2	c.C1038A	p.L346L	TGAGCTCGAGTGG	.	65.0	4.0	76.0	0.0	.	39	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66468660	66468660	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTBN2	NM_006946	exon16	c.C2910A	p.T970T	GGCCTGGGTCTCC	.	119.0	6.0	112.0	0.0	.	188	.	.	Atlas-SNP
PC	5091	hgsc.bcm.edu	hg19	11	66639169	66639169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PC	NM_000920	exon4	c.A310G	p.K104E	CCACCTTGATGAT	.	88.0	4.0	86.0	0.0	.	116	.	.	Atlas-SNP
PC	5091	hgsc.bcm.edu	hg19	11	66639568	66639568	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PC	NM_000920	exon3	c.C63A	p.T21T	GGGGGCGGTGGAG	.	89.0	4.0	89.0	0.0	.	116	.	.	Atlas-SNP
CORO1B	57175	hgsc.bcm.edu	hg19	11	67210003	67210003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CORO1B,NS,carcinoma,0,1	CORO1B	NM_020441	exon2	c.C97A	p.R33S	TAACACGGGACAC	.	149.0	6.0	123.0	1.0	.	30	.	.	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	hg19	11	70336441	70336441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHANK2	NM_133266	exon8	c.A727G	p.S243G	TTGGGCTCCCAGG	.	102.0	5.0	99.0	0.0	.	340	.	.	Atlas-SNP
PDE2A	5138	hgsc.bcm.edu	hg19	11	72292016	72292016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDE2A	NM_002599	exon24	c.G2047A	p.D683N	CGATGTCCCTGGT	.	71.0	4.0	89.0	0.0	.	156	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78437179	78437179	+	Silent	SNP	C	C	A	rs369844183	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ODZ4_ENST00000278550,NS,carcinoma,0,2	.	NM_001098816	exon23	c.G3495T	p.A1165A	CTTGGACGCGTCA	.	372.0	138.0	432.0	0.0	.	.	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92087868	92087868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAT3	NM_001008781	exon1	c.G2590T	p.G864C	TCTAATGGTGAAG	.	98.0	4.0	73.0	0.0	.	1822	.	.	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	100061877	100061877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CNTN5_ENST00000524871,right_upper_lobe,carcinoma,0,2	CNTN5	NM_001243270	exon13	c.G1600T	p.G534W	CCAGACGGGAGTC	.	47.0	3.0	39.0	0.0	.	324	.	.	Atlas-SNP
BIRC3	330	hgsc.bcm.edu	hg19	11	102206786	102206786	+	Nonsense_Mutation	SNP	G	G	T	rs145025961	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	BIRC3,colon,carcinoma,0,1	BIRC3	NM_001165	exon7	c.G1414T	p.G472X	ACTGCCGGAATTA	.	127.0	7.0	115.0	0.0	.	56	.	G|1.000;A|0.000	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103152947	103152947	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DYNC2H1	NM_001080463	exon73	c.T10822C	p.L3608L	GACATGTTACGGA	.	76.0	4.0	106.0	0.0	.	246	.	.	Atlas-SNP
ZC3H12C	85463	hgsc.bcm.edu	hg19	11	110035709	110035709	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZC3H12C	NM_033390	exon6	c.C1899T	p.S633S	CATGAGCTGTGGG	.	55.0	4.0	74.0	0.0	.	83	.	.	Atlas-SNP
ARHGAP20	57569	hgsc.bcm.edu	hg19	11	110479748	110479748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARHGAP20	NM_020809	exon9	c.G735T	p.W245C	ATTGACCCACAAC	.	102.0	5.0	124.0	0.0	.	150	.	.	Atlas-SNP
SIK2	23235	hgsc.bcm.edu	hg19	11	111594228	111594228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIK2	NM_015191	exon15	c.A2156G	p.Q719R	TCCAGCAGAAGCG	.	88.0	4.0	87.0	0.0	.	89	.	.	Atlas-SNP
PTS	5805	hgsc.bcm.edu	hg19	11	112097190	112097190	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTS	NM_000317	exon1	c.T24C	p.R8R	TGGCCGTCGCTGC	.	76.0	4.0	77.0	0.0	.	7	.	.	Atlas-SNP
ANKK1	255239	hgsc.bcm.edu	hg19	11	113266922	113266922	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKK1	NM_178510	exon5	c.C816A	p.P272P	GGACCCCAAGAAG	.	104.0	5.0	121.0	0.0	.	83	.	.	Atlas-SNP
FXYD6-FXYD2	100533181	hgsc.bcm.edu	hg19	11	117712509	117712509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001243598	exon4	c.C169A	p.L57I	TACTTAGGATAAG	.	87.0	5.0	112.0	0.0	.	.	.	.	Atlas-SNP
OR8D2	283160	hgsc.bcm.edu	hg19	11	124189725	124189725	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	OR8D2,right_upper_lobe,carcinoma,0,1	OR8D2	NM_001002918	exon1	c.T369C	p.Y123Y	AGCAACATAACGG	.	50.0	2.0	56.0	0.0	.	65	.	.	Atlas-SNP
OR8A1	390275	hgsc.bcm.edu	hg19	11	124440852	124440852	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OR8A1	NM_001005194	exon1	c.G888T	p.T296T	CACCACGGTAATC	.	154.0	8.0	180.0	0.0	.	61	.	.	Atlas-SNP
SPATA19	219938	hgsc.bcm.edu	hg19	11	133714476	133714476	+	Missense_Mutation	SNP	C	C	G	rs138068697	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPATA19	NM_174927	exon3	c.G195C	p.Q65H	TACACCCTGGGAA	.	178.0	110.0	225.0	0.0	.	36	.	C|1.000;T|0.000	Atlas-SNP
PLEKHG6	55200	hgsc.bcm.edu	hg19	12	6436814	6436814	+	Silent	SNP	C	C	A	rs149885168	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PLEKHG6,NS,carcinoma,0,1	PLEKHG6	NM_001144856	exon15	c.C2065A	p.R689R	AGGGCCCGGCTTC	.	48.0	2.0	43.0	0.0	.	62	.	C|1.000;G|0.000	Atlas-SNP
CLEC1A	51267	hgsc.bcm.edu	hg19	12	10224077	10224077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CLEC1A,NS,carcinoma,0,1	CLEC1A	NM_016511	exon6	c.G698A	p.S233N	TCTCTGCTTCTTG	.	63.0	3.0	72.0	0.0	.	48	.	.	Atlas-SNP
TAS2R42	353164	hgsc.bcm.edu	hg19	12	11338858	11338858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TAS2R42	NM_181429	exon1	c.A686G	p.H229R	CTCCTATGGGCCT	.	87.0	4.0	81.0	0.0	.	30	.	.	Atlas-SNP
SYT10	341359	hgsc.bcm.edu	hg19	12	33579155	33579155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SYT10	NM_198992	exon2	c.G427A	p.E143K	GGACTTCTGCTGG	.	621.0	235.0	675.0	2.0	.	109	.	.	Atlas-SNP
PDZRN4	29951	hgsc.bcm.edu	hg19	12	41946515	41946515	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PDZRN4	NM_001164595	exon6	c.C1261A	p.R421R	TGTTACCGAACAG	.	96.0	4.0	122.0	0.0	.	346	.	.	Atlas-SNP
PRPH	5630	hgsc.bcm.edu	hg19	12	49690226	49690226	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRPH	NM_006262	exon3	c.T618C	p.D206D	GGACGATGCCACT	.	77.0	4.0	74.0	0.0	.	26	.	.	Atlas-SNP
TROAP	10024	hgsc.bcm.edu	hg19	12	49725141	49725141	+	Missense_Mutation	SNP	G	G	T	rs200487146	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TROAP	NM_005480	exon14	c.G2243T	p.R748L	CCACCCGGGTCTG	.	123.0	5.0	97.0	0.0	.	80	.	G|0.999;A|0.001	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	hg19	12	53040547	53040547	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT2	NM_000423	exon7	c.A1446G	p.K482K	CAGCAGTTTGCGG	.	67.0	4.0	66.0	0.0	.	94	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53069530	53069530	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT1	NM_006121	exon9	c.1476-2A>G	.	ACATCCTGTAGGA	.	139.0	6.0	153.0	0.0	.	110	.	.	Atlas-SNP
KRT77	374454	hgsc.bcm.edu	hg19	12	53086273	53086273	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KRT77	NM_175078	exon7	c.G1359A	p.L453L	GACCCCCAGCATG	.	100.0	5.0	102.0	0.0	.	58	.	.	Atlas-SNP
TARBP2	6895	hgsc.bcm.edu	hg19	12	53899518	53899518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TARBP2	NM_134323	exon8	c.T827C	p.I276T	AGAAGATCCTGTC	.	61.0	4.0	46.0	0.0	.	35	.	.	Atlas-SNP
GTSF1	121355	hgsc.bcm.edu	hg19	12	54858950	54858950	+	Silent	SNP	G	G	T	rs146835334	bycluster;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GTSF1	NM_144594	exon3	c.C18A	p.T6T	GGAGTCGGCTGAA	.	87.0	4.0	82.0	0.0	.	15	.	G|1.000;A|0.000	Atlas-SNP
MMP19	4327	hgsc.bcm.edu	hg19	12	56234938	56234938	+	Missense_Mutation	SNP	C	C	A	rs202159629	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMP19	NM_001272101	exon3	c.G256T	p.G86C	CTAGGCCACAACG	.	45.0	4.0	35.0	0.0	.	61	.	C|0.999;T|0.001	Atlas-SNP
ESYT1	23344	hgsc.bcm.edu	hg19	12	56530663	56530663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ESYT1	NM_001184796	exon16	c.A1798G	p.K600E	TATATGAAACTAG	.	77.0	4.0	88.0	0.0	.	84	.	.	Atlas-SNP
SMARCC2	6601	hgsc.bcm.edu	hg19	12	56580987	56580987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SMARCC2_ENST00000267064,NS,carcinoma,0,2	SMARCC2	NM_139067	exon2	c.C215A	p.P72Q	GTGAGCGGTGCAT	.	71.0	4.0	89.0	0.0	.	212	.	.	Atlas-SNP
RBMS2	5939	hgsc.bcm.edu	hg19	12	56982115	56982115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	RBMS2,NS,carcinoma,0,1	RBMS2	NM_002898	exon12	c.T1100C	p.I367T	CTTACATCTCCCA	.	122.0	5.0	102.0	1.0	.	29	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56992704	56992704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BAZ2A	NM_013449	exon28	c.A5500G	p.I1834V	TTTTGATGATGCG	.	65.0	4.0	64.0	0.0	.	263	.	.	Atlas-SNP
TMEM194A	23306	hgsc.bcm.edu	hg19	12	57472459	57472459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM194A	NM_015257	exon1	c.G70A	p.G24S	CACCGCCCCCGAC	.	104.0	5.0	124.0	0.0	.	64	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57539101	57539101	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRP1	NM_002332	exon6	c.A669G	p.T223T	CATCACACCTACG	.	87.0	4.0	84.0	0.0	.	428	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57599189	57599189	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRP1	NM_002332	exon74	c.C11391A	p.R3797R	GGCACGCTGCGTG	.	93.0	4.0	66.0	0.0	.	428	.	.	Atlas-SNP
GLI1	2735	hgsc.bcm.edu	hg19	12	57864991	57864991	+	Missense_Mutation	SNP	G	G	T	rs149553839	bycluster;byfrequency;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GLI1	NM_005269	exon12	c.G2468T	p.G823V	CAGTGGGGTCTGA	.	84.0	4.0	69.0	0.0	.	141	.	G|0.999;A|0.001	Atlas-SNP
MARS	4141	hgsc.bcm.edu	hg19	12	57910119	57910119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARS	NM_004990	exon20	c.A2555C	p.Q852P	CAAAACAAGTATG	.	156.0	69.0	163.0	0.0	.	84	.	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67699020	67699020	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CAND1	NM_018448	exon10	c.G1572T	p.V524V	TCCAGTGGTGGCT	.	173.0	7.0	163.0	0.0	.	100	.	.	Atlas-SNP
IFNG	3458	hgsc.bcm.edu	hg19	12	68551870	68551870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFNG	NM_000619	exon3	c.T189A	p.S63R	TCTGTCACTCTCC	.	112.0	37.0	93.0	0.0	.	38	.	.	Atlas-SNP
CSRP2	1466	hgsc.bcm.edu	hg19	12	77253334	77253334	+	Silent	SNP	A	A	G	rs202057442		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSRP2	NM_001321	exon5	c.T498C	p.Y166Y	TTTACAATAGATT	.	332.0	161.0	333.0	1.0	.	22	.	A|0.999;G|0.001	Atlas-SNP
RASSF9	9182	hgsc.bcm.edu	hg19	12	86198974	86198974	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	RASSF9_ENST00000361228,rectum,carcinoma,0,2	RASSF9	NM_005447	exon2	c.C814T	p.R272X	TCAGTCGTTCTTC	.	109.0	35.0	141.0	0.0	.	100	.	.	Atlas-SNP
C12orf50	160419	hgsc.bcm.edu	hg19	12	88376940	88376940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C12orf50	NM_152589	exon12	c.G1159A	p.A387T	GCCAGGCTGAATC	.	82.0	4.0	94.0	0.0	.	70	.	.	Atlas-SNP
UHRF1BP1L	23074	hgsc.bcm.edu	hg19	12	100441351	100441351	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UHRF1BP1L	NM_015054	exon19	c.T4038C	p.H1346H	CACAAGATGATCA	.	87.0	4.0	87.0	0.0	.	144	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101736358	101736358	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UTP20	NM_014503	exon33	c.G4236T	p.T1412T	TTGTACGGTTTTT	.	92.0	4.0	97.0	0.0	.	222	.	.	Atlas-SNP
HCFC2	29915	hgsc.bcm.edu	hg19	12	104495757	104495757	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HCFC2	NM_013320	exon14	c.A1890G	p.A630A	AAATGCAGATGTA	.	95.0	4.0	91.0	0.0	.	94	.	.	Atlas-SNP
TCP11L2	255394	hgsc.bcm.edu	hg19	12	106740125	106740125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCP11L2	NM_152772	exon10	c.G1377A	p.M459I	ATGCATGCCTCCT	.	108.0	42.0	127.0	0.0	.	59	.	.	Atlas-SNP
POLR3B	55703	hgsc.bcm.edu	hg19	12	106824192	106824192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLR3B	NM_018082	exon14	c.C1405T	p.R469C	GGTCCTCGCTCCC	.	91.0	4.0	115.0	0.0	.	123	.	.	Atlas-SNP
GIT2	9815	hgsc.bcm.edu	hg19	12	110390999	110390999	+	Silent	SNP	G	G	A	rs369471977		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GIT2	NM_001135213	exon14	c.C1146T	p.H382H	AACGCTGTGCTGG	.	467.0	195.0	448.0	0.0	.	81	.	.	Atlas-SNP
ATP2A2	488	hgsc.bcm.edu	hg19	12	110729905	110729905	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A2	NM_001681	exon4	c.C300A	p.A100A	AGTAGCCAATGCA	.	199.0	8.0	217.0	0.0	.	78	.	.	Atlas-SNP
ALDH2	217	hgsc.bcm.edu	hg19	12	112204899	112204899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ALDH2	NM_001204889	exon1	c.A113G	p.Q38R	GCAACCAGGTGAG	.	14.0	5.0	5.0	0.0	.	91	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112622466	112622466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001109662	exon61	c.C9902T	p.P3301L	TGCAGCGGGATGT	.	88.0	4.0	94.0	0.0	.	.	.	.	Atlas-SNP
OAS2	4939	hgsc.bcm.edu	hg19	12	113444238	113444238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OAS2	NM_002535	exon8	c.A1489G	p.T497A	GGCTCCACACCCA	.	98.0	4.0	131.0	0.0	.	86	.	.	Atlas-SNP
TBX3	6926	hgsc.bcm.edu	hg19	12	115114249	115114249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBX3	NM_016569	exon6	c.G968T	p.R323M	AACACCCTCATGG	.	108.0	5.0	126.0	0.0	.	106	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117653120	117653120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NOS1	NM_001204218	exon30	c.C4401A	p.S1467R	TTAGGAGCTGAAA	.	86.0	4.0	92.0	0.0	.	240	.	.	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	hg19	12	123055607	123055607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	KNTC1,NS,carcinoma,0,2	KNTC1	NM_014708	exon24	c.G1953C	p.E651D	GGCAGAGATATTT	.	232.0	15.0	254.0	0.0	.	182	.	.	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	hg19	12	123798234	123798234	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SBNO1	NM_001167856	exon23	c.A3153G	p.K1051K	AATGGATTTCATG	.	68.0	4.0	66.0	0.0	.	138	.	.	Atlas-SNP
TCTN2	79867	hgsc.bcm.edu	hg19	12	124189191	124189191	+	Silent	SNP	G	G	T	rs145483549	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TCTN2,NS,carcinoma,0,2	TCTN2	NM_024809	exon15	c.G1725T	p.A575A	TGGCGCGGTGGAA	.	65.0	3.0	95.0	0.0	.	50	.	G|1.000;A|0.000	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124824721	124824721	+	Missense_Mutation	SNP	C	C	T	rs112797765	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.,32	NCOR2	NM_006312	exon39	c.G5518A	p.G1840R	CACCCCCGCCGCT	.	79.0	5.0	68.0	1.0	.	475	.	.	Atlas-SNP
DDX51	317781	hgsc.bcm.edu	hg19	12	132626881	132626881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DDX51	NM_175066	exon4	c.T757C	p.C253R	AAACACAGAGGTC	.	49.0	4.0	33.0	0.0	.	33	.	.	Atlas-SNP
ANKLE2	23141	hgsc.bcm.edu	hg19	12	133313525	133313525	+	Missense_Mutation	SNP	G	G	T	rs201586661	bycluster;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ANKLE2,NS,carcinoma,0,1	ANKLE2	NM_015114	exon8	c.C1547A	p.P516Q	AGTACCGGGTCTC	.	76.0	4.0	64.0	0.0	.	76	.	.	Atlas-SNP
ZNF10	7556	hgsc.bcm.edu	hg19	12	133727625	133727625	+	Silent	SNP	C	C	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF10	NM_015394	exon3	c.C45G	p.T15T	GGTGACCTTCAAG	.	208.0	84.0	206.0	0.0	.	58	.	.	Atlas-SNP
ZMYM2	7750	hgsc.bcm.edu	hg19	13	20659971	20659971	+	Silent	SNP	T	T	C	rs374447547		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZMYM2	NM_001190964	exon26	c.T3951C	p.N1317N	ACAGAATCTTAAT	.	85.0	4.0	108.0	0.0	.	191	.	.	Atlas-SNP
LATS2	26524	hgsc.bcm.edu	hg19	13	21555762	21555762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LATS2	NM_014572	exon6	c.G2508T	p.M836I	GGGCTCCATGCTG	.	90.0	4.0	64.0	0.0	.	176	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25276160	25276160	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP12A	NM_001185085	exon14	c.G1987T	p.E663X	ACAGTGGAAGACA	.	107.0	5.0	112.0	0.0	.	172	.	.	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26273474	26273474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP8A2	NM_016529	exon25	c.T2375C	p.I792T	CGGTCATATGCTG	.	90.0	48.0	91.0	0.0	.	181	.	.	Atlas-SNP
SLC46A3	283537	hgsc.bcm.edu	hg19	13	29287117	29287117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC46A3	NM_181785	exon3	c.G760T	p.G254C	TCTTACCAGAAGC	.	95.0	4.0	89.0	0.0	.	86	.	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32776658	32776658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FRY	NM_023037	exon31	c.T4012C	p.F1338L	CCCCTCTTCTCAG	.	84.0	5.0	72.0	0.0	.	312	.	.	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	hg19	13	32950834	32950834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BRCA2	NM_000059	exon21	c.C8660T	p.S2887L	TACCATCACGTGC	.	89.0	4.0	89.0	0.0	.	812	.	.	Atlas-SNP
KL	9365	hgsc.bcm.edu	hg19	13	33635814	33635814	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KL	NM_004795	exon4	c.C2598T	p.L866L	AGACCTCCCCATG	.	83.0	4.0	88.0	0.0	.	106	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35517180	35517180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NBEA	NM_015678	exon1	c.G223T	p.A75S	AAATTCGCAGTGT	.	116.0	5.0	165.0	0.0	.	340	.	.	Atlas-SNP
NHLRC3	387921	hgsc.bcm.edu	hg19	13	39613731	39613731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NHLRC3	NM_001012754	exon3	c.T268C	p.F90L	TTAGTGTTCACAG	.	85.0	4.0	81.0	0.0	.	35	.	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41892974	41892974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAA16	NM_001110798	exon3	c.T172C	p.C58R	CTGAACTGTTTAG	.	82.0	4.0	84.0	0.0	.	74	.	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41897285	41897285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NAA16	NM_001110798	exon5	c.A496G	p.M166V	TATGATATGGCCC	.	94.0	4.0	97.0	0.0	.	74	.	.	Atlas-SNP
NUDT15	55270	hgsc.bcm.edu	hg19	13	48611895	48611895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NUDT15	NM_018283	exon1	c.G13A	p.A5T	GCCAGCGCACAGC	.	61.0	4.0	74.0	0.0	.	12	.	.	Atlas-SNP
FNDC3A	22862	hgsc.bcm.edu	hg19	13	49781309	49781309	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FNDC3A	NM_001079673	exon26	c.A3375G	p.Q1125Q	GTGCCAAGACTCT	.	85.0	4.0	77.0	0.0	.	93	.	.	Atlas-SNP
COMMD6	170622	hgsc.bcm.edu	hg19	13	76104273	76104273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COMMD6	NM_203495	exon3	c.G184A	p.E62K	TCATTTCAAAGCA	.	79.0	5.0	81.0	0.0	.	4	.	.	Atlas-SNP
SCEL	8796	hgsc.bcm.edu	hg19	13	78130761	78130761	+	Missense_Mutation	SNP	G	G	T	rs200836262	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SCEL	NM_003843	exon3	c.G74T	p.R25L	CCACACGGAAGCA	.	92.0	4.0	84.0	0.0	.	85	.	.	Atlas-SNP
DZIP1	22873	hgsc.bcm.edu	hg19	13	96293971	96293971	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DZIP1	NM_014934	exon5	c.C175T	p.Q59X	TGAACTGGAAGAA	.	18.0	5.0	13.0	0.0	.	195	.	.	Atlas-SNP
SLC10A2	6555	hgsc.bcm.edu	hg19	13	103703608	103703608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC10A2	NM_000452	exon4	c.A760G	p.R254G	CATACCTGTACCA	.	54.0	4.0	46.0	0.0	.	67	.	.	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109318307	109318307	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYO16	NM_001198950	exon2	c.C102A	p.P34P	CCTTCCCCTTGGC	.	63.0	4.0	50.0	0.0	.	285	.	.	Atlas-SNP
RNASE4	6038	hgsc.bcm.edu	hg19	14	21167714	21167714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNASE4	NM_002937	exon2	c.A184G	p.M62V	CGGAAGATGACTT	.	55.0	4.0	89.0	0.0	.	18	.	.	Atlas-SNP
BCL2L2-PABPN1	100529063	hgsc.bcm.edu	hg19	14	23794468	23794468	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001199864	exon9	c.A975G	p.R325R	GGCTAGAGCGACA	.	109.0	5.0	201.0	0.0	.	.	.	.	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	hg19	14	24523712	24523712	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LRRC16B	NM_138360	exon5	c.T354C	p.P118P	CTGCCCTGGCCCT	.	71.0	4.0	79.0	0.0	.	120	.	.	Atlas-SNP
RNF31	55072	hgsc.bcm.edu	hg19	14	24621043	24621043	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	RNF31,NS,carcinoma,0,1	RNF31	NM_017999	exon11	c.C1972A	p.R658R	TGGGGCCGGGCAG	.	28.0	2.0	50.0	0.0	.	95	.	.	Atlas-SNP
C14orf166	51637	hgsc.bcm.edu	hg19	14	52471128	52471128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C14orf166	NM_016039	exon8	c.A629G	p.E210G	ACATAGAGGAGCT	.	96.0	5.0	144.0	0.0	.	23	.	.	Atlas-SNP
PTGER2	5732	hgsc.bcm.edu	hg19	14	52781586	52781586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTGER2	NM_000956	exon1	c.G320T	p.R107L	AGAGCCGCGCGTG	.	91.0	4.0	128.0	0.0	.	27	.	.	Atlas-SNP
OTX2	5015	hgsc.bcm.edu	hg19	14	57271044	57271044	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	OTX2	NM_001270525	exon2	c.A135G	p.K45K	GCGCTGTTTCCGG	.	89.0	4.0	127.0	0.0	.	47	.	.	Atlas-SNP
DACT1	51339	hgsc.bcm.edu	hg19	14	59112097	59112097	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DACT1	NM_016651	exon4	c.C756A	p.P252P	GAATCCCAAGTAC	.	106.0	5.0	151.0	0.0	.	119	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64492096	64492096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SYNE2,NS,carcinoma,0,1	SYNE2	NM_182914	exon41	c.C6209A	p.S2070Y	ATTCATCCGAAGG	.	56.0	3.0	110.0	0.0	.	577	.	.	Atlas-SNP
PPP1R36	145376	hgsc.bcm.edu	hg19	14	65054066	65054066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_172365	exon10	c.A866G	p.K289R	AAAAGAAACGCAT	.	78.0	4.0	92.0	0.0	.	.	.	.	Atlas-SNP
SPTB	6710	hgsc.bcm.edu	hg19	14	65252316	65252316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPTB	NM_001024858	exon17	c.A3794G	p.E1265G	GAGGCCTCCTGGG	.	62.0	4.0	56.0	0.0	.	378	.	.	Atlas-SNP
SLC39A9	55334	hgsc.bcm.edu	hg19	14	69922540	69922540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC39A9	NM_001252150	exon6	c.C650T	p.A217V	CATTGGCAGCACC	.	92.0	4.0	179.0	0.0	.	27	.	.	Atlas-SNP
ADAM20	8748	hgsc.bcm.edu	hg19	14	70989894	70989894	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM20	NM_003814	exon2	c.T1731C	p.S577S	ACTCTGAGATGCA	.	85.0	5.0	125.0	0.0	.	59	.	.	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	hg19	14	71517418	71517418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PCNX	NM_014982	exon23	c.C4388T	p.P1463L	TTGCCCCATGGCA	.	97.0	4.0	152.0	0.0	.	198	.	.	Atlas-SNP
PAPLN	89932	hgsc.bcm.edu	hg19	14	73719406	73719406	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PAPLN	NM_173462	exon10	c.C936A	p.P312P	CTACCCCGACCAC	.	60.0	4.0	117.0	0.0	.	180	.	.	Atlas-SNP
PTGR2	145482	hgsc.bcm.edu	hg19	14	74350824	74350824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTGR2	NM_152444	exon10	c.A1000G	p.T334A	ATGATGACAGGAG	.	91.0	4.0	106.0	0.0	.	21	.	.	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	hg19	14	77491917	77491917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IRF2BPL	NM_024496	exon1	c.T2219C	p.F740S	CAAGGGAAGCAAA	.	79.0	4.0	115.0	0.0	.	40	.	.	Atlas-SNP
SPATA7	55812	hgsc.bcm.edu	hg19	14	88892683	88892683	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPATA7	NM_018418	exon6	c.T480C	p.S160S	CCTAAGTCTACAT	.	76.0	4.0	92.0	0.0	.	58	.	.	Atlas-SNP
TTC8	123016	hgsc.bcm.edu	hg19	14	89338781	89338781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TTC8,colon,carcinoma,0,1	TTC8	NM_144596	exon13	c.G1332T	p.K444N	GCGGAAGGGCCAC	.	48.0	3.0	89.0	0.0	.	42	.	.	Atlas-SNP
TTC7B	145567	hgsc.bcm.edu	hg19	14	91142948	91142948	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC7B	NM_001010854	exon9	c.C1071A	p.I357I	CAGACTGATGAGG	.	75.0	4.0	129.0	0.0	.	93	.	.	Atlas-SNP
C14orf159	80017	hgsc.bcm.edu	hg19	14	91655256	91655256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C14orf159	NM_001102368	exon9	c.A937G	p.N313D	TCAGGGAACCGGG	.	45.0	4.0	68.0	0.0	.	57	.	.	Atlas-SNP
GPR68	8111	hgsc.bcm.edu	hg19	14	91700731	91700731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	GPR68,colon,carcinoma,0,1	GPR68	NM_001177676	exon2	c.C664T	p.R222C	CCTTGCGGCTCTT	.	27.0	2.0	55.0	0.0	.	32	.	.	Atlas-SNP
SMEK1	55671	hgsc.bcm.edu	hg19	14	91937188	91937188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMEK1	NM_032560	exon11	c.G1614T	p.L538F	TAATGCCAAGAAA	.	93.0	4.0	142.0	0.0	.	94	.	.	Atlas-SNP
TC2N	123036	hgsc.bcm.edu	hg19	14	92258866	92258866	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TC2N	NM_001128596	exon9	c.A892T	p.K298X	GAAGTTTAATAGC	.	81.0	4.0	108.0	0.0	.	49	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94088153	94088153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	UNC79,NS,carcinoma,+1,2	UNC79	NM_020818	exon30	c.G4043T	p.R1348L	TAGATCGGTGTGA	.	75.0	3.0	139.0	0.0	.	366	.	.	Atlas-SNP
IFI27L1	122509	hgsc.bcm.edu	hg19	14	94568841	94568841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IFI27L1	NM_145249	exon5	c.T242C	p.V81A	TCTCTGTGACATC	.	83.0	4.0	136.0	0.0	.	11	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96781572	96781572	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATG2B	NM_018036	exon24	c.3562-1G>T	.	AAATTCCTATACA	.	98.0	4.0	205.0	0.0	.	169	.	.	Atlas-SNP
SETD3	84193	hgsc.bcm.edu	hg19	14	99927679	99927679	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SETD3	NM_032233	exon5	c.197-2A>G	.	CAGACCTATATTA	.	49.0	4.0	73.0	0.0	.	56	.	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	hg19	14	101351053	101351053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RTL1	NM_001134888	exon1	c.T73C	p.S25P	CGGAGGACTCCAT	.	68.0	4.0	76.0	0.0	.	120	.	.	Atlas-SNP
TUBGCP5	114791	hgsc.bcm.edu	hg19	15	22846911	22846911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TUBGCP5,NS,carcinoma,0,1	TUBGCP5	NM_052903	exon8	c.G786T	p.R262S	TGACAGGGTTTTG	.	99.0	4.0	127.0	0.0	.	82	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33855061	33855061	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RYR3	NM_001243996	exon11	c.C996A	p.S332S	AGACTCCAGTCAC	.	100.0	4.0	127.0	0.0	.	760	.	.	Atlas-SNP
SLC12A6	9990	hgsc.bcm.edu	hg19	15	34547524	34547524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC12A6	NM_133647	exon7	c.T815C	p.F272S	AGATAAAAGCAGA	.	69.0	5.0	91.0	0.0	.	205	.	.	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39886569	39886569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	THBS1	NM_003246	exon21	c.G3433T	p.G1145C	TATGCTGGTGGTA	.	98.0	4.0	106.0	0.0	.	106	.	.	Atlas-SNP
PLCB2	5330	hgsc.bcm.edu	hg19	15	40588496	40588496	+	Splice_Site	SNP	C	C	T	rs377366618		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PLCB2_ENST00000260402,NS,carcinoma,0,2	PLCB2	NM_004573	exon17	c.1696+1G>A	.	AACTTACGGGCAG	.	41.0	2.0	69.0	0.0	.	177	.	.	Atlas-SNP
NDUFAF1	51103	hgsc.bcm.edu	hg19	15	41689120	41689120	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NDUFAF1	NM_016013	exon2	c.T138C	p.P46P	TTTGCCAGGAGAA	.	100.0	4.0	188.0	0.0	.	39	.	.	Atlas-SNP
PLA2G4D	283748	hgsc.bcm.edu	hg19	15	42364008	42364008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PLA2G4D,caecum,carcinoma,0,1	PLA2G4D	NM_178034	exon15	c.A1537G	p.R513G	TCCTCCTCATCAG	.	88.0	4.0	117.0	1.0	.	72	.	.	Atlas-SNP
TRIM69	140691	hgsc.bcm.edu	hg19	15	45051022	45051022	+	Silent	SNP	G	G	T	rs148920822	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	TRIM69,NS,carcinoma,0,1	TRIM69	NM_182985	exon4	c.G783T	p.T261T	AAAGACGGAACAA	.	86.0	4.0	118.0	0.0	.	47	.	G|0.999;A|0.001	Atlas-SNP
SHF	90525	hgsc.bcm.edu	hg19	15	45490991	45490991	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SHF,NS,carcinoma,0,1	SHF	NM_138356	exon2	c.G282A	p.R94R	CCTGTCCCTGAGT	.	51.0	3.0	47.0	0.0	.	27	.	.	Atlas-SNP
SLC12A1	6557	hgsc.bcm.edu	hg19	15	48593518	48593518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SLC12A1_ENST00000396577,NS,carcinoma,-1,2	SLC12A1	NM_001184832	exon26	c.C3103A	p.R1035S	AGTTACCGCCAAG	.	72.0	3.0	104.0	1.0	.	243	.	.	Atlas-SNP
CYP19A1	1588	hgsc.bcm.edu	hg19	15	51504537	51504537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP19A1	NM_031226	exon10	c.C1243A	p.L415I	TTTCAAGAGTAAA	.	107.0	6.0	195.0	0.0	.	75	.	.	Atlas-SNP
MYO5C	55930	hgsc.bcm.edu	hg19	15	52532010	52532010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYO5C	NM_018728	exon21	c.T2623C	p.F875L	TCTGGAATCTGCG	.	100.0	4.0	130.0	0.0	.	162	.	.	Atlas-SNP
RAB27A	5873	hgsc.bcm.edu	hg19	15	55520885	55520885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RAB27A	NM_183235	exon5	c.T265C	p.F89L	CTCTGAAGAACGC	.	94.0	4.0	127.0	0.0	.	18	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63916007	63916007	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HERC1	NM_003922	exon73	c.C13528A	p.R4510R	ACGCTCGGGAAGG	.	50.0	4.0	75.0	0.0	.	624	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63918224	63918224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HERC1	NM_003922	exon71	c.A13235T	p.Y4412F	GATGAGTACATGA	.	60.0	4.0	97.0	0.0	.	624	.	.	Atlas-SNP
SPG21	51324	hgsc.bcm.edu	hg19	15	65261628	65261628	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPG21	NM_001127889	exon7	c.T633C	p.P211P	TTTATGAGGTTCC	.	71.0	4.0	85.0	0.0	.	29	.	.	Atlas-SNP
KBTBD13	390594	hgsc.bcm.edu	hg19	15	65370197	65370197	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KBTBD13	NM_001101362	exon1	c.C1044A	p.A348A	GGTGGCCCACCGC	.	85.0	4.0	103.0	0.0	.	9	.	.	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	hg19	15	68631922	68631922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGA11	NM_001004439	exon11	c.A1192G	p.T398A	CACTCGTCTCCTT	.	58.0	5.0	85.0	0.0	.	110	.	.	Atlas-SNP
SPESP1	246777	hgsc.bcm.edu	hg19	15	69238897	69238897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPESP1	NM_145658	exon2	c.A1024G	p.R342G	TCAAGGAGAGTCA	.	38.0	4.0	41.0	0.0	.	39	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72196317	72196317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYO9A	NM_006901	exon21	c.A2830G	p.T944A	GAACTGTTTCCAG	.	91.0	4.0	125.0	0.0	.	203	.	.	Atlas-SNP
PARP6	56965	hgsc.bcm.edu	hg19	15	72552968	72552968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PARP6	NM_020214	exon9	c.C607A	p.L203I	CCCGAAGCTCTGG	.	67.0	4.0	109.0	0.0	.	44	.	.	Atlas-SNP
MPI	4351	hgsc.bcm.edu	hg19	15	75182887	75182887	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MPI	NM_002435	exon2	c.G36T	p.A12A	CTGTGCGGTGCAG	.	66.0	4.0	108.0	0.0	.	32	.	.	Atlas-SNP
COX5A	9377	hgsc.bcm.edu	hg19	15	75221502	75221502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COX5A	NM_004255	exon2	c.A172G	p.T58A	AGTATGTTACCCA	.	121.0	39.0	183.0	0.0	.	9	.	.	Atlas-SNP
MAN2C1	4123	hgsc.bcm.edu	hg19	15	75649212	75649212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAN2C1	NM_001256494	exon22	c.A2630G	p.E877G	CCGTGTTCTGACA	.	86.0	4.0	115.0	0.0	.	76	.	.	Atlas-SNP
PTPN9	5780	hgsc.bcm.edu	hg19	15	75761250	75761250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PTPN9	NM_002833	exon13	c.T1642C	p.S548P	TGCGTGACACCGT	.	67.0	4.0	100.0	0.0	.	53	.	.	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	hg19	15	75982391	75982391	+	Missense_Mutation	SNP	G	G	T	rs200187536	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CSPG4	NM_001897	exon3	c.C1015A	p.R339S	CCAGGCGGTGTTC	.	62.0	4.0	63.0	0.0	.	175	.	G|0.999;A|0.001	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79254552	79254552	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RASGRF1	NM_002891	exon28	c.T3756C	p.S1252S	TACAAAAGATTGG	.	54.0	4.0	92.0	0.0	.	168	.	.	Atlas-SNP
IL16	3603	hgsc.bcm.edu	hg19	15	81592606	81592606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IL16	NM_001172128	exon14	c.T2939C	p.L980P	AGCTACTTGACGA	.	98.0	4.0	133.0	0.0	.	254	.	.	Atlas-SNP
MEX3B	84206	hgsc.bcm.edu	hg19	15	82335547	82335547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	MEX3B,caecum,carcinoma,+1,1	MEX3B	NM_032246	exon2	c.C1664A	p.P555Q	CAGACCGGGCACT	.	59.0	3.0	89.0	0.0	.	50	.	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	hg19	15	85327163	85327163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF592	NM_014630	exon4	c.C1257A	p.S419R	CCCCAGCGAGATG	.	100.0	4.0	80.0	0.0	.	95	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86286858	86286858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AKAP13	NM_006738	exon36	c.A8206G	p.N2736D	AAAAGGAACAGCA	.	78.0	4.0	129.0	0.0	.	394	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89398363	89398363	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ACAN	NM_001135	exon12	c.C2547T	p.P849P	CGTGCCCAGCTGG	.	110.0	5.0	142.0	0.0	.	220	.	.	Atlas-SNP
RLBP1	6017	hgsc.bcm.edu	hg19	15	89753607	89753607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RLBP1	NM_000326	exon9	c.A863G	p.D288G	CCGAAGTCAGAGG	.	94.0	4.0	70.0	0.0	.	34	.	.	Atlas-SNP
POLG	5428	hgsc.bcm.edu	hg19	15	89876764	89876764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	POLG	NM_002693	exon2	c.G222T	p.L74F	GATGTCCAATGGG	.	70.0	4.0	85.0	0.0	.	75	.	.	Atlas-SNP
PLIN1	5346	hgsc.bcm.edu	hg19	15	90210232	90210232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLIN1	NM_001145311	exon8	c.T1144C	p.S382P	ATAGGGACATGGC	.	87.0	4.0	120.0	0.0	.	36	.	.	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90346884	90346884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANPEP	NM_001150	exon8	c.C1431A	p.Y477X	CTTGCTGTAGGAG	.	96.0	4.0	111.0	0.0	.	124	.	.	Atlas-SNP
ZNF710	374655	hgsc.bcm.edu	hg19	15	90610374	90610374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF710	NM_198526	exon2	c.A5G	p.E2G	GGATGGAGGGCTT	.	86.0	42.0	104.0	0.0	.	50	.	.	Atlas-SNP
BLM	641	hgsc.bcm.edu	hg19	15	91304196	91304196	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	BLM	NM_000057	exon7	c.A1593G	p.K531K	TGTGAAAGATCAG	.	93.0	4.0	112.0	0.0	.	122	.	.	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91423173	91423173	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FURIN	NM_002569	exon12	c.C1335A	p.A445A	AGTGGCCCCCCAG	.	68.0	4.0	117.0	0.0	.	85	.	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93498741	93498741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD2	NM_001271	exon15	c.A1808G	p.K603R	AAGATAAGGTGTG	.	98.0	4.0	147.0	0.0	.	280	.	.	Atlas-SNP
CHSY1	22856	hgsc.bcm.edu	hg19	15	101718547	101718547	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHSY1	NM_014918	exon3	c.T1455C	p.H485H	CTCCTCATGCTCC	.	81.0	4.0	93.0	0.0	.	60	.	.	Atlas-SNP
ITFG3	83986	hgsc.bcm.edu	hg19	16	312091	312091	+	Splice_Site	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITFG3	NM_032039	exon7	c.709-1G>T	.	ATTGCAGGTTAGT	.	113.0	5.0	243.0	0.0	.	42	.	.	Atlas-SNP
DECR2	26063	hgsc.bcm.edu	hg19	16	461574	461574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DECR2	NM_020664	exon8	c.T875C	p.L292P	CTAAGCTCTAGGT	.	98.0	4.0	158.0	0.0	.	47	.	.	Atlas-SNP
ATP6V0C	527	hgsc.bcm.edu	hg19	16	2564163	2564163	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP6V0C	NM_001198569	exon2	c.C59A	p.S20X	GCGCCTCGGCCGC	.	88.0	5.0	98.0	0.0	.	10	.	.	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2818026	2818026	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRRM2	NM_016333	exon11	c.T7497C	p.P2499P	TGCCCCTGGGGTG	.	80.0	4.0	121.0	0.0	.	263	.	.	Atlas-SNP
THOC6	79228	hgsc.bcm.edu	hg19	16	3076554	3076554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	THOC6	NM_001142350	exon7	c.T449C	p.L150S	GTCAGTTGCACAC	.	88.0	4.0	95.0	0.0	.	40	.	.	Atlas-SNP
MEFV	4210	hgsc.bcm.edu	hg19	16	3306411	3306411	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MEFV	NM_000243	exon1	c.C177A	p.T59T	ATAGTAGGTGACC	.	87.0	4.0	136.0	0.0	.	170	.	.	Atlas-SNP
ZNF263	10127	hgsc.bcm.edu	hg19	16	3334126	3334126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF263	NM_005741	exon1	c.A308G	p.E103G	TGCAGGAGCTGCA	.	125.0	5.0	134.0	0.0	.	58	.	.	Atlas-SNP
DNASE1	1773	hgsc.bcm.edu	hg19	16	3705477	3705477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNASE1	NM_005223	exon2	c.G103A	p.E35K	TTTGGGGAGACCA	.	82.0	4.0	139.0	0.0	.	16	.	.	Atlas-SNP
MGRN1	23295	hgsc.bcm.edu	hg19	16	4715144	4715144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MGRN1	NM_001142291	exon7	c.T670C	p.F224L	GCTGCCTTTGAAA	.	61.0	4.0	154.0	0.0	.	66	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9857312	9857312	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	GRIN2A,NS,carcinoma,0,1	GRIN2A	NM_000833	exon14	c.C4089A	p.S1363S	GTTATCGGAGGTG	.	63.0	4.0	120.0	0.0	.	366	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9862782	9862782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon13	c.T2521C	p.F841L	AGTAGAAGAGGTG	.	55.0	5.0	77.0	0.0	.	366	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9943750	9943750	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GRIN2A	NM_000833	exon6	c.C1191A	p.S397S	ACAGTCGGAGAAG	.	62.0	4.0	120.0	0.0	.	366	.	.	Atlas-SNP
RSL1D1	26156	hgsc.bcm.edu	hg19	16	11935611	11935611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RSL1D1	NM_015659	exon7	c.T796C	p.S266P	CAAACGAGGAAAA	.	122.0	5.0	135.0	0.0	.	40	.	.	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18863750	18863750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SMG1	NM_015092	exon32	c.G4803T	p.L1601F	CTGTCCCAAAATG	.	88.0	4.0	109.0	0.0	.	401	.	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27506736	27506736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GTF3C1	NM_001520	exon15	c.C2428A	p.L810I	AGATGAGGTACCA	.	88.0	4.0	134.0	0.0	.	210	.	.	Atlas-SNP
SH2B1	25970	hgsc.bcm.edu	hg19	16	28884047	28884047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SH2B1	NM_001145797	exon8	c.G1918T	p.G640W	TCTGCAGGGGAGG	.	96.0	4.0	181.0	0.0	.	160	.	.	Atlas-SNP
ATP2A1	487	hgsc.bcm.edu	hg19	16	28914131	28914131	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ATP2A1	NM_004320	exon19	c.C2643A	p.T881T	CAACACCCACTTT	.	121.0	5.0	160.0	0.0	.	116	.	.	Atlas-SNP
CORO1A	11151	hgsc.bcm.edu	hg19	16	30196584	30196584	+	Silent	SNP	G	G	T	rs61736363	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CORO1A	NM_007074	exon2	c.G54T	p.P18P	ACAGCCGGCCAAG	.	93.0	4.0	127.0	0.0	.	36	.	G|0.986;C|0.014	Atlas-SNP
ZNF629	23361	hgsc.bcm.edu	hg19	16	30795164	30795164	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF629	NM_001080417	exon3	c.G485A	p.W162X	TTGGACCACTGGC	.	99.0	4.0	153.0	0.0	.	44	.	.	Atlas-SNP
ZNF646	9726	hgsc.bcm.edu	hg19	16	31088245	31088245	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF646	NM_014699	exon2	c.C600T	p.P200P	TCTCCCCATCCCA	.	71.0	6.0	91.0	0.0	.	133	.	.	Atlas-SNP
SLC5A2	6524	hgsc.bcm.edu	hg19	16	31499986	31499986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC5A2	NM_003041	exon10	c.G1173T	p.M391I	GCTCATGTCCTCG	.	56.0	4.0	113.0	0.0	.	58	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47545621	47545621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHKB	NM_000293	exon5	c.T451C	p.S151P	CTTCACTCTGTTT	.	86.0	4.0	138.0	0.0	.	298	.	.	Atlas-SNP
CBLN1	869	hgsc.bcm.edu	hg19	16	49313350	49313350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CBLN1	NM_004352	exon3	c.T547C	p.S183P	AGGTCGAGTACTT	.	133.0	6.0	214.0	0.0	.	26	.	.	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	hg19	16	49670350	49670350	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF423	NM_015069	exon4	c.C2713A	p.R905R	GCAGCCGGTGATT	.	81.0	4.0	95.0	0.0	.	463	.	.	Atlas-SNP
NKD1	85407	hgsc.bcm.edu	hg19	16	50667325	50667325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NKD1	NM_033119	exon10	c.C1046T	p.P349L	GGTCCCCCAAGGC	.	149.0	7.0	275.0	0.0	.	43	.	.	Atlas-SNP
CHD9	80205	hgsc.bcm.edu	hg19	16	53358168	53358168	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHD9	NM_025134	exon39	c.G8007A	p.L2669L	GTCACTGCAAGTA	.	96.0	5.0	124.0	0.0	.	203	.	.	Atlas-SNP
LPCAT2	54947	hgsc.bcm.edu	hg19	16	55543151	55543151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	LPCAT2,NS,carcinoma,0,1	LPCAT2	NM_017839	exon1	c.G58T	p.G20W	GGCGTCGGGAACG	.	36.0	2.0	91.0	0.0	.	35	.	.	Atlas-SNP
CETP	1071	hgsc.bcm.edu	hg19	16	57007309	57007309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CETP	NM_000078	exon9	c.G817T	p.G273W	CTGCTGGGGGACT	.	91.0	4.0	109.0	0.0	.	50	.	.	Atlas-SNP
TK2	7084	hgsc.bcm.edu	hg19	16	66575828	66575828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TK2	NM_001172645	exon3	c.G185T	p.G62V	GTCTTCCCACTTG	.	53.0	4.0	84.0	0.0	.	17	.	.	Atlas-SNP
RLTPR	146206	hgsc.bcm.edu	hg19	16	67685847	67685847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RLTPR	NM_001013838	exon26	c.G2612T	p.G871V	TCACGGGGACCTT	.	62.0	4.0	78.0	0.0	.	124	.	.	Atlas-SNP
THAP11	57215	hgsc.bcm.edu	hg19	16	67876832	67876832	+	Silent	SNP	G	G	A	rs141903290		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	THAP11,NS,carcinoma,0,1	THAP11	NM_020457	exon1	c.G375A	p.Q125Q	GCAGCAGCAGCAG	.	29.0	2.0	49.0	1.0	.	27	.	G|0.998;A|0.002	Atlas-SNP
ESRP2	80004	hgsc.bcm.edu	hg19	16	68265144	68265144	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ESRP2	NM_024939	exon12	c.C1648A	p.R550R	GCACTCGGCTCAT	.	98.0	4.0	110.0	0.0	.	118	.	.	Atlas-SNP
COG4	25839	hgsc.bcm.edu	hg19	16	70546324	70546324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COG4	NM_015386	exon5	c.G556A	p.D186N	TGGCATCAATCAT	.	57.0	4.0	83.0	0.0	.	64	.	.	Atlas-SNP
ZFHX3	463	hgsc.bcm.edu	hg19	16	72992020	72992020	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFHX3	NM_006885	exon2	c.G2025A	p.K675K	GTTGCACTTGGGG	.	39.0	4.0	41.0	0.0	.	404	.	.	Atlas-SNP
LDHD	197257	hgsc.bcm.edu	hg19	16	75149474	75149474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LDHD	NM_194436	exon2	c.C157A	p.Q53K	CGTGCTGCTCTCG	.	101.0	5.0	153.0	0.0	.	34	.	.	Atlas-SNP
CHST6	4166	hgsc.bcm.edu	hg19	16	75513666	75513666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CHST6,colon,carcinoma,0,1	CHST6	NM_021615	exon3	c.C61T	p.L21F	GGAGGAGGAAGGT	.	45.0	3.0	54.0	0.0	.	57	.	.	Atlas-SNP
PLCG2	5336	hgsc.bcm.edu	hg19	16	81972412	81972412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	PLCG2_ENST00000359376,NS,carcinoma,0,4	PLCG2	NM_002661	exon29	c.G3205A	p.G1069S	GTTCTCGGTGCTC	.	99.0	4.0	152.0	0.0	.	276	.	.	Atlas-SNP
IRF8	3394	hgsc.bcm.edu	hg19	16	85946744	85946744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IRF8	NM_002163	exon5	c.T455C	p.V152A	CTTCTGTGGACGA	.	68.0	4.0	132.0	0.0	.	65	.	.	Atlas-SNP
SLC7A5	8140	hgsc.bcm.edu	hg19	16	87871523	87871523	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC7A5	NM_003486	exon7	c.A1068G	p.E356E	GTGGCCTTCCCGG	.	90.0	4.0	130.0	0.0	.	28	.	.	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	hg19	16	88792799	88792799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIEZO1	NM_001142864	exon27	c.G3861T	p.W1287C	GCTGTCCCAGATG	.	96.0	4.0	155.0	0.0	.	79	.	.	Atlas-SNP
PABPN1L	390748	hgsc.bcm.edu	hg19	16	88932215	88932215	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PABPN1L	NM_001080487	exon2	c.G390A	p.V130V	CCTACCCACGGTC	.	124.0	5.0	198.0	0.0	.	25	.	.	Atlas-SNP
SPG7	6687	hgsc.bcm.edu	hg19	16	89616941	89616941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SPG7	NM_003119	exon13	c.A1703G	p.Q568R	AAGAACAGAAAGT	.	78.0	4.0	100.0	0.0	.	75	.	.	Atlas-SNP
DEF8	54849	hgsc.bcm.edu	hg19	16	90023996	90023996	+	Silent	SNP	C	C	A	rs377269615	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEF8	NM_207514	exon5	c.C483A	p.P161P	GCTGCCCGAGCAG	.	273.0	232.0	421.0	0.0	.	28	.	.	Atlas-SNP
INPP5K	51763	hgsc.bcm.edu	hg19	17	1399994	1399994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	INPP5K	NM_016532	exon9	c.C1067A	p.P356H	CTGCTGGGGAAGT	.	145.0	6.0	165.0	0.0	.	30	.	.	Atlas-SNP
DPH1	1801	hgsc.bcm.edu	hg19	17	1943643	1943643	+	Missense_Mutation	SNP	G	G	A	rs201983229	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DPH1	NM_001383	exon8	c.G896A	p.R299H	TGGGCCGCCAGGG	.	86.0	4.0	76.0	0.0	.	32	.	.	Atlas-SNP
ZFP3	124961	hgsc.bcm.edu	hg19	17	4995559	4995559	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFP3	NM_153018	exon2	c.G760T	p.E254X	CCATATGAATGTA	.	69.0	4.0	54.0	0.0	.	54	.	.	Atlas-SNP
SLC13A5	284111	hgsc.bcm.edu	hg19	17	6597477	6597477	+	Silent	SNP	G	G	T	rs139660928	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SLC13A5,NS,carcinoma,0,1	SLC13A5	NM_001143838	exon8	c.C1095A	p.T365T	TAGCAGGGTGGCC	.	80.0	4.0	65.0	0.0	.	57	.	G|1.000;C|0.000	Atlas-SNP
DLG4	1742	hgsc.bcm.edu	hg19	17	7097797	7097797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DLG4	NM_001365	exon14	c.A1448G	p.D483G	GTCTTGTCGTAAT	.	56.0	4.0	56.0	0.0	.	110	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11661007	11661007	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH9	NM_001372	exon35	c.C6993T	p.T2331T	CAGAACCAGGTAG	.	143.0	6.0	148.0	0.0	.	695	.	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	hg19	17	12899257	12899257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ELAC2	NM_018127	exon18	c.G1698T	p.L566F	ACTTACCAAGGCG	.	80.0	4.0	74.0	0.0	.	48	.	.	Atlas-SNP
CDRT15	146822	hgsc.bcm.edu	hg19	17	14139241	14139241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CDRT15	NM_001007530	exon3	c.T499C	p.W167R	GCATCCATGCCTG	.	357.0	81.0	311.0	0.0	.	20	.	.	Atlas-SNP
FAM83G	644815	hgsc.bcm.edu	hg19	17	18881095	18881095	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM83G	NM_001039999	exon5	c.T1884C	p.P628P	CCGGAGAGGGACT	.	86.0	4.0	65.0	0.0	.	51	.	.	Atlas-SNP
SEZ6	124925	hgsc.bcm.edu	hg19	17	27286199	27286199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEZ6	NM_001098635	exon10	c.G1951A	p.G651R	CATCCCCATCATA	.	97.0	4.0	76.0	0.0	.	61	.	.	Atlas-SNP
TP53I13	90313	hgsc.bcm.edu	hg19	17	27896100	27896100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TP53I13	NM_138349	exon2	c.C137T	p.P46L	TGCCTCCGCAGGT	.	80.0	4.0	27.0	0.0	.	17	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29676237	29676237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NF1	NM_001042492	exon49	c.A7289G	p.E2430G	AATTTGAAGTGAA	.	72.0	5.0	66.0	0.0	.	1586	.	.	Atlas-SNP
C17orf75	64149	hgsc.bcm.edu	hg19	17	30666839	30666839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C17orf75	NM_022344	exon3	c.G340T	p.E114X	TTAGCTCCACAGA	.	88.0	4.0	82.0	0.0	.	23	.	.	Atlas-SNP
LIG3	3980	hgsc.bcm.edu	hg19	17	33319691	33319691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIG3	NM_013975	exon8	c.A1435G	p.T479A	CTGATGACACCTG	.	95.0	4.0	89.0	0.0	.	164	.	.	Atlas-SNP
GAS2L2	246176	hgsc.bcm.edu	hg19	17	34074044	34074044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GAS2L2	NM_139285	exon5	c.C1076A	p.P359Q	AGGAATGGTGCCA	.	80.0	5.0	86.0	0.0	.	94	.	.	Atlas-SNP
LHX1	3975	hgsc.bcm.edu	hg19	17	35300345	35300345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LHX1	NM_005568	exon5	c.T1138C	p.S380P	CCCTTCTCGTCGC	.	82.0	5.0	68.0	0.0	.	48	.	.	Atlas-SNP
HNF1B	6928	hgsc.bcm.edu	hg19	17	36070598	36070598	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HNF1B	NM_000458	exon5	c.C1119A	p.A373A	CACCATGGCGCTG	.	96.0	4.0	102.0	0.0	.	61	.	.	Atlas-SNP
HNF1B	6928	hgsc.bcm.edu	hg19	17	36091619	36091619	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HNF1B	NM_000458	exon4	c.C1012T	p.Q338X	TGGGCTGGTGGTG	.	431.0	174.0	421.0	0.0	.	61	.	.	Atlas-SNP
PIP4K2B	8396	hgsc.bcm.edu	hg19	17	36935671	36935671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PIP4K2B	NM_003559	exon5	c.C619T	p.H207Y	GCCGATGGCTGAA	.	98.0	4.0	74.0	0.0	.	35	.	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	hg19	17	38561112	38561112	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TOP2A	NM_001067	exon17	c.T1977C	p.D659D	TCGATCATCTATC	.	68.0	4.0	68.0	0.0	.	124	.	.	Atlas-SNP
KRTAP4-12	83755	hgsc.bcm.edu	hg19	17	39279994	39279994	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	KRTAP4-12,NS,carcinoma,0,1	KRTAP4-12	NM_031854	exon1	c.A381G	p.R127R	CTGGGGTCTGCAG	.	121.0	5.0	84.0	2.0	.	32	.	.	Atlas-SNP
DHX58	79132	hgsc.bcm.edu	hg19	17	40255722	40255722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DHX58	NM_024119	exon12	c.A1658G	p.Q553R	AGTAGCTGCACGT	.	81.0	4.0	54.0	0.0	.	39	.	.	Atlas-SNP
STAT5A	6776	hgsc.bcm.edu	hg19	17	40460208	40460208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	STAT5A	NM_003152	exon17	c.T1919C	p.L640P	GCAACCTGTGGAA	.	149.0	6.0	144.0	0.0	.	49	.	.	Atlas-SNP
HSD17B1	3292	hgsc.bcm.edu	hg19	17	40706435	40706435	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	HSD17B1	NM_000413	exon5	c.C552T	p.I184I	CCTGATCGAGTGC	.	60.0	4.0	39.0	0.0	.	24	.	.	Atlas-SNP
PLEKHH3	79990	hgsc.bcm.edu	hg19	17	40823547	40823547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHH3	NM_024927	exon8	c.T1106C	p.L369P	TCCGCCAGTTCCG	.	77.0	4.0	74.0	0.0	.	49	.	.	Atlas-SNP
C17orf104	284071	hgsc.bcm.edu	hg19	17	42744141	42744141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C17orf104	NM_001145080	exon5	c.T862C	p.Y288H	GATATCTACCATT	.	100.0	4.0	74.0	0.0	.	75	.	.	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	hg19	17	45368371	45368371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB3	NM_000212	exon9	c.T1177C	p.S393P	GAGTTGTCTCTAT	.	113.0	5.0	92.0	0.0	.	157	.	.	Atlas-SNP
SP6	80320	hgsc.bcm.edu	hg19	17	45925602	45925602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SP6,NS,carcinoma,0,1	SP6	NM_001258248	exon2	c.A194G	p.Q65R	TAGCCCTGCGAGA	.	69.0	3.0	33.0	0.0	.	26	.	.	Atlas-SNP
ITGA3	3675	hgsc.bcm.edu	hg19	17	48166578	48166578	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGA3	NM_005501	exon25	c.C3150A	p.P1050P	CCTGCCCACCAAG	.	87.0	4.0	110.0	0.0	.	128	.	.	Atlas-SNP
MPO	4353	hgsc.bcm.edu	hg19	17	56355209	56355209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MPO	NM_000250	exon7	c.C1183T	p.R395C	GGATGCGCGCTGA	.	37.0	15.0	38.0	0.0	.	114	.	.	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	57058078	57058078	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PPM1E	NM_014906	exon7	c.T1954C	p.L652L	TCAGGGTTGGAAA	.	100.0	4.0	92.0	0.0	.	97	.	.	Atlas-SNP
BCAS3	54828	hgsc.bcm.edu	hg19	17	59024696	59024696	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	BCAS3,NS,carcinoma,0,1	BCAS3	NM_001099432	exon14	c.G1204T	p.G402X	CACAGGGGAGAAA	.	65.0	4.0	78.0	0.0	.	90	.	.	Atlas-SNP
ACE	1636	hgsc.bcm.edu	hg19	17	61561702	61561702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ACE	NM_000789	exon12	c.A1721G	p.Q574R	TGCTGCAGGCTGG	.	78.0	4.0	97.0	0.0	.	187	.	.	Atlas-SNP
DCAF7	10238	hgsc.bcm.edu	hg19	17	61666468	61666468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DCAF7	NM_005828	exon8	c.G963T	p.W321C	GCAGTGGGCATCA	.	124.0	5.0	107.0	0.0	.	36	.	.	Atlas-SNP
SSTR2	6752	hgsc.bcm.edu	hg19	17	71166524	71166524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SSTR2	NM_001050	exon2	c.A1066G	p.T356A	ACGGAGACCCAGA	.	86.0	5.0	73.0	0.0	.	27	.	.	Atlas-SNP
TMEM104	54868	hgsc.bcm.edu	hg19	17	72815910	72815910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMEM104	NM_017728	exon9	c.G658T	p.G220X	CTCCTCGGACCGT	.	148.0	6.0	163.0	0.0	.	49	.	.	Atlas-SNP
HID1	283987	hgsc.bcm.edu	hg19	17	72955014	72955014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_030630	exon9	c.T1141C	p.F381L	TGTTGAAGTCGCA	.	120.0	5.0	103.0	0.0	.	.	.	.	Atlas-SNP
KCTD2	23510	hgsc.bcm.edu	hg19	17	73059137	73059137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KCTD2	NM_015353	exon6	c.A787G	p.M263V	TCGCGGATGTAAA	.	125.0	5.0	64.0	0.0	.	15	.	.	Atlas-SNP
TSEN54	283989	hgsc.bcm.edu	hg19	17	73518036	73518036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TSEN54	NM_207346	exon8	c.G874T	p.G292C	GGAGCCGGTAAGC	.	72.0	4.0	82.0	0.0	.	27	.	.	Atlas-SNP
LLGL2	3993	hgsc.bcm.edu	hg19	17	73566143	73566143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LLGL2	NM_004524	exon15	c.C1681A	p.H561N	AAGGGGCACGAGC	.	88.0	4.0	83.0	0.0	.	155	.	.	Atlas-SNP
UNK	85451	hgsc.bcm.edu	hg19	17	73811297	73811297	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UNK	NM_001080419	exon7	c.T924C	p.C308C	CAGCTGTCCCCGA	.	97.0	4.0	116.0	0.0	.	87	.	.	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73916127	73916127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBF1	NM_001080542	exon18	c.A1847G	p.Q616R	TGGTGCTGCTGCT	.	115.0	5.0	96.0	0.0	.	48	.	.	Atlas-SNP
SRSF2	6427	hgsc.bcm.edu	hg19	17	74732955	74732955	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SRSF2	NM_001195427	exon1	c.G288A	p.P96P	TGAGTCCGGGGGG	.	38.0	4.0	33.0	0.0	.	544	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76456313	76456313	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DNAH17	NM_173628	exon59	c.T9366C	p.C3122C	TGTTTCACAGGCC	.	116.0	5.0	96.0	0.0	.	347	.	.	Atlas-SNP
USP36	57602	hgsc.bcm.edu	hg19	17	76810529	76810529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	USP36	NM_025090	exon11	c.A1129G	p.S377G	GGCAGCTGTAGCC	.	96.0	4.0	83.0	0.0	.	243	.	.	Atlas-SNP
ENGASE	64772	hgsc.bcm.edu	hg19	17	77073755	77073755	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ENGASE	NM_001042573	exon3	c.T225C	p.Y75Y	ATATTATGACAAG	.	78.0	4.0	61.0	0.0	.	55	.	.	Atlas-SNP
NPTX1	4884	hgsc.bcm.edu	hg19	17	78445639	78445639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NPTX1	NM_002522	exon4	c.G970T	p.G324W	AGACCCCGTCCCG	.	84.0	4.0	74.0	0.0	.	28	.	.	Atlas-SNP
PYCR1	5831	hgsc.bcm.edu	hg19	17	79892336	79892336	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PYCR1	NM_153824	exon6	c.A663G	p.E221E	GTGCTGTTCTGAG	.	58.0	4.0	59.0	0.0	.	44	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80038328	80038328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FASN	NM_004104	exon40	c.A6965G	p.Q2322R	TGGGCCTGCAGCT	.	110.0	5.0	74.0	0.0	.	154	.	.	Atlas-SNP
TBCD	6904	hgsc.bcm.edu	hg19	17	80897247	80897247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TBCD	NM_005993	exon37	c.G3374A	p.R1125Q	AGATCCGGAAGAC	.	70.0	4.0	75.0	0.0	.	94	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3071875	3071875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOM1	NM_003803	exon37	c.T4721C	p.V1574A	CCCAACACCCGGG	.	95.0	4.0	86.0	0.0	.	192	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3187546	3187546	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYOM1	NM_003803	exon5	c.G861T	p.T287T	CCAAACCGTGTGG	.	89.0	4.0	115.0	0.0	.	192	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3215059	3215059	+	Missense_Mutation	SNP	G	G	T	rs371866822		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	MYOM1,NS,carcinoma,+1,1	MYOM1	NM_003803	exon2	c.C163A	p.R55S	CCCGGCGGTGCGC	.	60.0	4.0	83.0	1.0	.	192	.	.	Atlas-SNP
ZBTB14	7541	hgsc.bcm.edu	hg19	18	5291320	5291320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZFP161,right_lower_lobe,carcinoma,0,1	.	NM_001243702	exon4	c.A887G	p.E296G	AGTTTCTCATGCT	.	95.0	4.0	76.0	0.0	.	.	.	.	Atlas-SNP
TWSG1	57045	hgsc.bcm.edu	hg19	18	9337333	9337333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TWSG1	NM_020648	exon2	c.A106G	p.S36G	GATGTGAGCAAAT	.	44.0	4.0	35.0	0.0	.	23	.	.	Atlas-SNP
CEP192	55125	hgsc.bcm.edu	hg19	18	13015339	13015339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP192	NM_032142	exon6	c.G532T	p.D178Y	GTGCTTGATGCTG	.	89.0	4.0	89.0	0.0	.	340	.	.	Atlas-SNP
MIB1	57534	hgsc.bcm.edu	hg19	18	19383906	19383906	+	Silent	SNP	T	T	C	rs144652547		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MIB1	NM_020774	exon10	c.T1410C	p.A470A	GCAAGCTGCTAGT	.	88.0	4.0	66.0	0.0	.	87	.	T|1.000;C|0.000	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21355846	21355846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LAMA3	NM_001127717	exon10	c.A1364G	p.E455G	ACTGTGAGAAGTG	.	101.0	5.0	122.0	0.0	.	397	.	.	Atlas-SNP
TTC39C	125488	hgsc.bcm.edu	hg19	18	21660556	21660556	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TTC39C	NM_001135993	exon5	c.C468T	p.I156I	TTATATCAAAGGT	.	83.0	4.0	75.0	0.0	.	83	.	.	Atlas-SNP
SLC14A1	6563	hgsc.bcm.edu	hg19	18	43310402	43310402	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC14A1	NM_001146037	exon2	c.C285A	p.T95T	TGTCACCGGTGAC	.	97.0	5.0	99.0	0.0	.	84	.	.	Atlas-SNP
MAPK4	5596	hgsc.bcm.edu	hg19	18	48255833	48255833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MAPK4	NM_002747	exon6	c.T1373C	p.L458P	TCATCCTGGACCT	.	66.0	4.0	63.0	0.0	.	75	.	.	Atlas-SNP
ZNF532	55205	hgsc.bcm.edu	hg19	18	56586800	56586800	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZNF532,caecum,carcinoma,0,1	ZNF532	NM_018181	exon4	c.G1281T	p.A427A	GTCTGCGGTCGTG	.	97.0	4.0	103.0	0.0	.	108	.	.	Atlas-SNP
FAM69C	125704	hgsc.bcm.edu	hg19	18	72114420	72114420	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM69C	NM_001044369	exon2	c.A297G	p.R99R	CTTGCCTCTGTTG	.	55.0	4.0	50.0	0.0	.	45	.	.	Atlas-SNP
CTDP1	9150	hgsc.bcm.edu	hg19	18	77488935	77488935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CTDP1	NM_004715	exon11	c.T2446C	p.F816L	CAGATGTTTGGTG	.	73.0	4.0	63.0	0.0	.	67	.	.	Atlas-SNP
SHC2	25759	hgsc.bcm.edu	hg19	19	422413	422413	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SHC2	NM_012435	exon11	c.G1353T	p.A451A	GCCTGCCGCCACT	.	98.0	4.0	88.0	0.0	.	47	.	.	Atlas-SNP
AP3D1	8943	hgsc.bcm.edu	hg19	19	2138617	2138617	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AP3D1	NM_003938	exon3	c.192+1G>A	.	CACTTACATACGT	.	101.0	7.0	72.0	0.0	.	81	.	.	Atlas-SNP
CACTIN	58509	hgsc.bcm.edu	hg19	19	3626642	3626642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_021231	exon1	c.G119A	p.R40Q	TCCTCCCGGCGCC	.	35.0	5.0	29.0	0.0	.	.	.	.	Atlas-SNP
SIRT6	51548	hgsc.bcm.edu	hg19	19	4179153	4179153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIRT6	NM_016539	exon3	c.T325C	p.F109L	CCAGGAAGCGGAG	.	93.0	5.0	67.0	0.0	.	16	.	.	Atlas-SNP
PRR22	163154	hgsc.bcm.edu	hg19	19	5783322	5783322	+	Silent	SNP	C	C	A	rs188791439	bycluster;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PRR22	NM_001134316	exon3	c.G936T	p.P312P	CAGGGCCGGCCCA	.	85.0	4.0	66.0	0.0	.	25	.	C|0.997;T|0.003	Atlas-SNP
XAB2	56949	hgsc.bcm.edu	hg19	19	7691045	7691045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	XAB2	NM_020196	exon5	c.A634G	p.K212E	CGGCCTTAGACAC	.	101.0	41.0	90.0	0.0	.	69	.	.	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	hg19	19	10106242	10106242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	COL5A3	NM_015719	exon16	c.A1585G	p.M529V	TCACCATCTTGCC	.	80.0	4.0	55.0	0.0	.	243	.	.	Atlas-SNP
RDH8	50700	hgsc.bcm.edu	hg19	19	10131464	10131464	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RDH8	NM_015725	exon4	c.G582A	p.L194L	GCTGCTGCAGTTC	.	80.0	4.0	101.0	0.0	.	51	.	.	Atlas-SNP
TYK2	7297	hgsc.bcm.edu	hg19	19	10476357	10476357	+	Silent	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TYK2	NM_003331	exon7	c.C847T	p.L283L	GGGCCAGCAGCCT	.	93.0	45.0	93.0	0.0	.	126	.	.	Atlas-SNP
ILF3	3609	hgsc.bcm.edu	hg19	19	10793837	10793837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ILF3	NM_017620	exon14	c.G1585T	p.G529C	AAGCACGGCAAGA	.	99.0	4.0	84.0	0.0	.	99	.	.	Atlas-SNP
ZNF20	7568	hgsc.bcm.edu	hg19	19	12243683	12243683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF20	NM_021143	exon4	c.A1318G	p.I440V	CATGTATATGCAA	.	89.0	4.0	75.0	0.0	.	86	.	.	Atlas-SNP
LPHN1	22859	hgsc.bcm.edu	hg19	19	14273762	14273762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LPHN1	NM_001008701	exon6	c.G866T	p.R289L	ACCAGCCGCCCGT	.	89.0	4.0	62.0	0.0	.	107	.	.	Atlas-SNP
EMR3	84658	hgsc.bcm.edu	hg19	19	14765979	14765979	+	Splice_Site	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EMR3	NM_032571	exon7	c.394-2A>T	.	TGCAGCTTTGAAG	.	309.0	135.0	259.0	1.0	.	99	.	.	Atlas-SNP
ZNF333	84449	hgsc.bcm.edu	hg19	19	14815924	14815924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF333	NM_032433	exon6	c.C365T	p.P122L	AGACACCATTGAC	.	72.0	4.0	90.0	0.0	.	76	.	.	Atlas-SNP
FCHO1	23149	hgsc.bcm.edu	hg19	19	17892040	17892040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FCHO1	NM_001161358	exon20	c.A1628G	p.D543G	TCCTAGACCTGAT	.	74.0	4.0	49.0	0.0	.	69	.	.	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	hg19	19	17988895	17988895	+	Missense_Mutation	SNP	C	C	A	rs149570759	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	SLC5A5,arm,malignant_melanoma,0,1	SLC5A5	NM_000453	exon7	c.C962A	p.P321Q	CTGCCCCAGACCA	.	35.0	4.0	36.0	0.0	.	67	.	.	Atlas-SNP
UPF1	5976	hgsc.bcm.edu	hg19	19	18963017	18963017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	UPF1	NM_002911	exon6	c.G884T	p.R295L	TCCTGCGGTACGA	.	117.0	5.0	121.0	0.0	.	88	.	.	Atlas-SNP
NCAN	1463	hgsc.bcm.edu	hg19	19	19359573	19359573	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NCAN	NM_004386	exon14	c.C3702A	p.Y1234X	CAAGTACAATGTC	.	126.0	60.0	129.0	0.0	.	277	.	.	Atlas-SNP
ZNF737	100129842	hgsc.bcm.edu	hg19	19	20727871	20727871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZNF737,NS,carcinoma,+1,1	ZNF737	NM_001159293	exon4	c.T1138C	p.W380R	AGGACCAGTTGAA	.	50.0	2.0	49.0	0.0	.	50	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22940398	22940398	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZNF99,NS,carcinoma,0,1	ZNF99	NM_001080409	exon4	c.G2313A	p.K771K	GAAATGCTTAAAA	.	44.0	3.0	32.0	0.0	.	273	.	.	Atlas-SNP
ANKRD27	84079	hgsc.bcm.edu	hg19	19	33140643	33140643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ANKRD27	NM_032139	exon3	c.T158C	p.F53S	GACTCAAACTGAC	.	99.0	4.0	72.0	0.0	.	86	.	.	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	hg19	19	33498926	33498926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RHPN2	NM_033103	exon7	c.G754T	p.A252S	CTGCGGCTCTCTG	.	159.0	60.0	118.0	0.0	.	107	.	.	Atlas-SNP
LSR	51599	hgsc.bcm.edu	hg19	19	35757273	35757273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LSR	NM_205834	exon6	c.G934T	p.G312C	GCCGCCGGCAAAG	.	98.0	4.0	105.0	0.0	.	60	.	.	Atlas-SNP
GAPDHS	26330	hgsc.bcm.edu	hg19	19	36033226	36033226	+	Missense_Mutation	SNP	A	A	G	rs148474705	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GAPDHS	NM_014364	exon5	c.A455G	p.E152G	GCAAAGAGCCCAA	.	121.0	5.0	82.0	0.0	.	34	.	A|0.999;C|0.001	Atlas-SNP
ZFP82	284406	hgsc.bcm.edu	hg19	19	36884281	36884281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZFP82	NM_133466	exon5	c.T961C	p.C321R	AGCCACACAAAAA	.	117.0	5.0	92.0	0.0	.	71	.	.	Atlas-SNP
FAM98C	147965	hgsc.bcm.edu	hg19	19	38897603	38897603	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM98C	NM_174905	exon7	c.C804A	p.T268T	TCTGACCCCAGAA	.	96.0	5.0	80.0	0.0	.	39	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38948829	38948829	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	RYR1,right_upper_lobe,carcinoma,0,2	RYR1	NM_001042723	exon18	c.C2064A	p.T688T	CCTCACCGAGGGC	.	43.0	2.0	31.0	0.0	.	708	.	.	Atlas-SNP
PLEKHG2	64857	hgsc.bcm.edu	hg19	19	39907025	39907025	+	Missense_Mutation	SNP	G	G	T	rs138517241	bycluster	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHG2	NM_022835	exon5	c.G517T	p.G173W	AGCGCCGGGGGTA	.	100.0	4.0	125.0	0.0	.	329	.	G|1.000;T|0.000	Atlas-SNP
PLEKHG2	64857	hgsc.bcm.edu	hg19	19	39907052	39907052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PLEKHG2	NM_022835	exon5	c.A544G	p.R182G	GTGCAGAGGGTGA	.	97.0	4.0	83.0	0.0	.	329	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40440523	40440523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FCGBP	NM_003890	exon1	c.G3T	p.M1I	GGCACCCATGGCT	.	57.0	4.0	51.0	0.0	.	416	.	.	Atlas-SNP
CYP2B6	1555	hgsc.bcm.edu	hg19	19	41518302	41518302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CYP2B6	NM_000767	exon7	c.A1064G	p.E355G	TCTATGAGATTCA	.	97.0	4.0	93.0	0.0	.	79	.	.	Atlas-SNP
ZNF221	7638	hgsc.bcm.edu	hg19	19	44471269	44471269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF221	NM_013359	exon6	c.T1615C	p.C539R	GAGCAGTGTGAGA	.	91.0	4.0	87.0	0.0	.	59	.	.	Atlas-SNP
ZNF223	7766	hgsc.bcm.edu	hg19	19	44570978	44570978	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF223	NM_013361	exon5	c.A997T	p.K333X	TTGTGTAAGCATC	.	135.0	52.0	103.0	0.0	.	61	.	.	Atlas-SNP
ZNF225	7768	hgsc.bcm.edu	hg19	19	44635250	44635250	+	Silent	SNP	C	C	A	rs201221735	by1000genomes;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF225	NM_013362	exon5	c.C483A	p.S161S	TGTCTCCGTCCTT	.	121.0	5.0	103.0	0.0	.	41	.	C|1.000;T|0.000	Atlas-SNP
MARK4	57787	hgsc.bcm.edu	hg19	19	45801087	45801087	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MARK4	NM_001199867	exon15	c.T1752C	p.G584G	GGGTGGTGGGGGT	.	88.0	7.0	46.0	0.0	.	132	.	.	Atlas-SNP
RSPH6A	81492	hgsc.bcm.edu	hg19	19	46307718	46307718	+	Missense_Mutation	SNP	C	C	A	rs139803225	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	RSPH6A,NS,carcinoma,0,1	RSPH6A	NM_030785	exon3	c.G1445T	p.R482L	TGGGCCCGCAGGT	.	113.0	6.0	113.0	0.0	.	70	.	C|1.000;G|0.000	Atlas-SNP
CCDC9	26093	hgsc.bcm.edu	hg19	19	47764057	47764057	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC9	NM_015603	exon5	c.T423C	p.S141S	CCTCTCTGGAGCT	.	143.0	6.0	146.0	0.0	.	37	.	.	Atlas-SNP
LIG1	3978	hgsc.bcm.edu	hg19	19	48630537	48630537	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LIG1	NM_000234	exon21	c.A2001G	p.G667G	CACCTCTCCATTG	.	98.0	4.0	89.0	0.0	.	151	.	.	Atlas-SNP
FUT1	2523	hgsc.bcm.edu	hg19	19	49253770	49253770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	FUT1,caecum,carcinoma,0,1	FUT1	NM_000148	exon4	c.G769A	p.V257I	CGAAAACGGGGGC	.	48.0	2.0	41.0	0.0	.	44	.	.	Atlas-SNP
TULP2	7288	hgsc.bcm.edu	hg19	19	49401098	49401098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TULP2	NM_003323	exon2	c.A28G	p.R10G	ACTCTCTCATCAA	.	83.0	4.0	63.0	0.0	.	60	.	.	Atlas-SNP
PPFIA3	8541	hgsc.bcm.edu	hg19	19	49640052	49640052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PPFIA3	NM_003660	exon15	c.G1737T	p.E579D	CGATGAGGAGGAG	.	109.0	5.0	75.0	0.0	.	71	.	.	Atlas-SNP
CD37	951	hgsc.bcm.edu	hg19	19	49842011	49842011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CD37	NM_001774	exon6	c.A502G	p.R168G	ATCCTGAGAGGTA	.	85.0	4.0	76.0	0.0	.	33	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50775107	50775107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYH14	NM_001145809	exon26	c.A3173G	p.E1058G	CTCAGGAGCGGAA	.	90.0	4.0	73.0	0.0	.	261	.	.	Atlas-SNP
FAM71E1	112703	hgsc.bcm.edu	hg19	19	50971076	50971076	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FAM71E1	NM_138411	exon4	c.T502C	p.L168L	ACTTCAAGGGGAA	.	77.0	4.0	61.0	0.0	.	21	.	.	Atlas-SNP
ZNF610	162963	hgsc.bcm.edu	hg19	19	52856964	52856964	+	Silent	SNP	C	C	T	rs375754279		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	ZNF610,NS,carcinoma,0,1	ZNF610	NM_001161427	exon4	c.C93T	p.I31I	GGCCATCGAATTC	.	73.0	4.0	66.0	0.0	.	84	.	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	hg19	19	53856000	53856000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF845	NM_138374	exon4	c.A2072G	p.Y691C	AACCTTACAAGTG	.	94.0	4.0	77.0	0.0	.	101	.	.	Atlas-SNP
TMC4	147798	hgsc.bcm.edu	hg19	19	54664261	54664261	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TMC4	NM_001145303	exon14	c.G2013T	p.V671V	CAGAGCCACAGTG	.	100.0	4.0	88.0	0.0	.	89	.	.	Atlas-SNP
LILRA5	353514	hgsc.bcm.edu	hg19	19	54822783	54822783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LILRA5	NM_181879	exon5	c.A613G	p.T205A	TGGGGGTCACAGG	.	132.0	6.0	157.0	0.0	.	49	.	.	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	hg19	19	56244026	56244026	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	NLRP9	NM_176820	exon2	c.C1171A	p.R391R	TTAGTCGGGCTCT	.	90.0	4.0	62.0	0.0	.	163	.	.	Atlas-SNP
TRIB3	57761	hgsc.bcm.edu	hg19	20	376998	376998	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TRIB3	NM_021158	exon4	c.G741T	p.L247L	GAGCCTGGGCGTG	.	96.0	4.0	98.0	0.0	.	50	.	.	Atlas-SNP
ADAM33	80332	hgsc.bcm.edu	hg19	20	3655209	3655209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAM33	NM_025220	exon6	c.A542G	p.H181R	TCCCTGTGGCCAC	.	57.0	4.0	48.0	0.0	.	76	.	.	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	hg19	20	3670895	3670895	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SIGLEC1	NM_023068	exon18	c.C4608A	p.P1536P	CATGGTGGGCGTC	.	47.0	4.0	46.0	0.0	.	210	.	.	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	hg19	20	16492142	16492142	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIF16B	NM_001199865	exon6	c.A477G	p.R159R	TAGATCTCTCACA	.	94.0	4.0	106.0	0.0	.	305	.	.	Atlas-SNP
MYLK2	85366	hgsc.bcm.edu	hg19	20	30419870	30419870	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MYLK2	NM_033118	exon12	c.C1641A	p.A547A	GAAAGCCAAACGC	.	98.0	6.0	77.0	0.0	.	76	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34067549	34067549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP250	NM_007186	exon19	c.G2367T	p.Q789H	GGGGCAGCTGGAG	.	127.0	41.0	170.0	0.0	.	141	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34086433	34086433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CEP250	NM_007186	exon27	c.G3665T	p.G1222V	AGAATGGAGCTAG	.	54.0	4.0	42.0	0.0	.	141	.	.	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36851952	36851952	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	KIAA1755	NM_001029864	exon9	c.T2256C	p.P752P	CCCCCCAGGGGGG	.	79.0	4.0	66.0	0.0	.	145	.	.	Atlas-SNP
SNAI1	6615	hgsc.bcm.edu	hg19	20	48600493	48600493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAI1	NM_005985	exon2	c.T215C	p.I72T	AGCCAATTGCCTG	.	86.0	5.0	72.0	0.0	.	28	.	.	Atlas-SNP
SLC2A4RG	56731	hgsc.bcm.edu	hg19	20	62373570	62373570	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC2A4RG	NM_020062	exon5	c.C667T	p.L223L	ATCCGCCTGGTGC	.	137.0	62.0	126.0	0.0	.	20	.	.	Atlas-SNP
CXADR	1525	hgsc.bcm.edu	hg19	21	18919456	18919456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CXADR	NM_001207065	exon2	c.C155A	p.P52Q	AGGGACCGCTGGA	.	57.0	4.0	67.0	0.0	.	44	.	.	Atlas-SNP
ADAMTS5	11096	hgsc.bcm.edu	hg19	21	28296553	28296553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ADAMTS5	NM_007038	exon8	c.G2612T	p.G871V	TGTGATCCCACTT	.	133.0	51.0	104.0	0.0	.	184	.	.	Atlas-SNP
SLC37A1	54020	hgsc.bcm.edu	hg19	21	43979198	43979198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SLC37A1	NM_018964	exon12	c.C980A	p.P327Q	AAATTCCAGTAAG	.	51.0	5.0	37.0	0.0	.	48	.	.	Atlas-SNP
WDR4	10785	hgsc.bcm.edu	hg19	21	44274711	44274711	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WDR4	NM_018669	exon8	c.T752C	p.F251S	CACCAGAATGCAA	.	55.0	4.0	51.0	0.0	.	35	.	.	Atlas-SNP
TSPEAR	54084	hgsc.bcm.edu	hg19	21	45953608	45953608	+	Missense_Mutation	SNP	C	C	T	rs370848096		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TSPEAR	NM_144991	exon3	c.G502A	p.V168I	AGAAGACGCCTGC	.	188.0	74.0	124.0	0.0	.	110	.	.	Atlas-SNP
ITGB2	3689	hgsc.bcm.edu	hg19	21	46321640	46321640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB2	NM_000211	exon6	c.T508C	p.S170P	CGAAGGACCCGAA	.	67.0	5.0	63.0	0.0	.	107	.	.	Atlas-SNP
ITGB2	3689	hgsc.bcm.edu	hg19	21	46330223	46330223	+	Silent	SNP	G	G	T	rs375907746	alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ITGB2	NM_000211	exon3	c.C123A	p.P41P	GCAGCCGGGCCCC	.	143.0	6.0	104.0	0.0	.	107	.	.	Atlas-SNP
CCT8L2	150160	hgsc.bcm.edu	hg19	22	17072001	17072001	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CCT8L2,bladder,carcinoma,0,1	CCT8L2	NM_014406	exon1	c.G1440T	p.V480V	AGTTCCCACACCC	.	155.0	113.0	285.0	0.0	.	150	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	hg19	22	19222036	19222036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CLTCL1	NM_001835	exon7	c.C1163A	p.P388Q	ACCTTTGGTGCAG	.	83.0	4.0	138.0	0.0	.	115	.	.	Atlas-SNP
C22orf29	79680	hgsc.bcm.edu	hg19	22	19839039	19839039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	C22orf29	NM_024627	exon3	c.T746C	p.V249A	CTAGATACAGAGT	.	88.0	4.0	102.0	0.0	.	23	.	.	Atlas-SNP
SNAP29	9342	hgsc.bcm.edu	hg19	22	21235375	21235375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SNAP29	NM_004782	exon3	c.C473T	p.A158V	AGGAAGCAAAGTA	.	153.0	107.0	209.0	1.0	.	22	.	.	Atlas-SNP
AIFM3	150209	hgsc.bcm.edu	hg19	22	21329042	21329042	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	AIFM3,colon,carcinoma,0,1	AIFM3	NM_001146288	exon8	c.C675A	p.S225S	CTTCTCCGACCGG	.	67.0	3.0	115.0	1.0	.	49	.	.	Atlas-SNP
EWSR1	2130	hgsc.bcm.edu	hg19	22	29692342	29692342	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	EWSR1	NM_013986	exon13	c.C1293A	p.A431A	GGCTGCCGTGGAA	.	82.0	4.0	102.0	0.0	.	104	.	.	Atlas-SNP
MORC2	22880	hgsc.bcm.edu	hg19	22	31333570	31333570	+	Missense_Mutation	SNP	C	C	T	rs201852637		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	MORC2,caecum,carcinoma,0,1	MORC2	NM_014941	exon16	c.G1312A	p.D438N	ACTCACCGCACTG	.	28.0	2.0	55.0	0.0	.	78	.	C|0.999;T|0.001	Atlas-SNP
PATZ1	23598	hgsc.bcm.edu	hg19	22	31724792	31724792	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PATZ1	NM_032052	exon4	c.C1561T	p.Q521X	GGTCCTGGCGCAG	.	73.0	4.0	105.0	0.0	.	24	.	.	Atlas-SNP
SFI1	9814	hgsc.bcm.edu	hg19	22	31969140	31969140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SFI1	NM_001007467	exon9	c.A862G	p.R288G	AAACGGAGATTTC	.	53.0	4.0	51.0	0.0	.	78	.	.	Atlas-SNP
DEPDC5	9681	hgsc.bcm.edu	hg19	22	32217607	32217607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DEPDC5	NM_001136029	exon22	c.C1990T	p.H664Y	GCATATCATGAAG	.	74.0	4.0	88.0	0.0	.	266	.	.	Atlas-SNP
SSTR3	6753	hgsc.bcm.edu	hg19	22	37602782	37602782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SSTR3	NM_001051	exon2	c.A1061G	p.E354G	TCCTCCTCCTCAT	.	44.0	4.0	41.0	0.0	.	42	.	.	Atlas-SNP
TOMM22	56993	hgsc.bcm.edu	hg19	22	39078943	39078943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TOMM22	NM_020243	exon3	c.T296C	p.V99A	TTCCCGTTGTCTT	.	95.0	4.0	130.0	0.0	.	10	.	.	Atlas-SNP
SUN2	25777	hgsc.bcm.edu	hg19	22	39147022	39147022	+	Missense_Mutation	SNP	C	C	A	rs373600095	bycluster;alternate_allele	TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SUN2	NM_001199580	exon5	c.G305T	p.R102L	CTCCTCCGCACCC	.	53.0	4.0	52.0	0.0	.	59	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	39994207	39994207	+	Silent	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CACNA1I	NM_001003406	exon2	c.T288C	p.L96L	GACACTTGGCATG	.	98.0	4.0	140.0	0.0	.	264	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41572904	41572904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	EP300,NS,carcinoma,0,1	EP300	NM_001429	exon31	c.C5189A	p.S1730Y	GCGATTCTCGCCG	.	92.0	4.0	95.0	0.0	.	367	.	.	Atlas-SNP
CHADL	150356	hgsc.bcm.edu	hg19	22	41634867	41634867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CHADL	NM_138481	exon3	c.A209G	p.Q70R	TTGCCCTGCAGGT	.	56.0	4.0	89.0	0.0	.	20	.	.	Atlas-SNP
CCDC134	79879	hgsc.bcm.edu	hg19	22	42205910	42205910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CCDC134	NM_024821	exon3	c.G131T	p.R44L	AGCGGCGGGAGCA	.	95.0	4.0	131.0	0.0	.	19	.	.	Atlas-SNP
SEPT3	55964	hgsc.bcm.edu	hg19	22	42377812	42377812	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SEPT3	NM_019106	exon2	c.C174A	p.T58T	GAAGACCGGTTTC	.	72.0	6.0	83.0	0.0	.	53	.	.	Atlas-SNP
TCF20	6942	hgsc.bcm.edu	hg19	22	42607070	42607070	+	Silent	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	TCF20	NM_181492	exon1	c.G4242T	p.S1414S	TAGGTCCGAAGCC	.	82.0	4.0	112.0	0.0	.	164	.	.	Atlas-SNP
LDOC1L	84247	hgsc.bcm.edu	hg19	22	44893427	44893427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	LDOC1L	NM_032287	exon2	c.C10T	p.P4S	TCTGCGGCTGCAC	.	66.0	4.0	119.0	0.0	.	24	.	.	Atlas-SNP
PHF21B	112885	hgsc.bcm.edu	hg19	22	45291935	45291935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PHF21B	NM_138415	exon6	c.T860C	p.L287P	GTAACCAGGCCTA	.	98.0	67.0	139.0	0.0	.	61	.	.	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	hg19	22	45943008	45943008	+	Silent	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	FBLN1	NM_006487	exon12	c.C1365T	p.A455A	GTGTGCCAACGTC	.	45.0	33.0	80.0	0.0	.	143	.	.	Atlas-SNP
MLC1	23209	hgsc.bcm.edu	hg19	22	50515343	50515343	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MLC1	NM_139202	exon8	c.526-2A>G	.	GAGCCCTACGAAG	.	99.0	4.0	134.0	0.0	.	48	.	.	Atlas-SNP
PANX2	56666	hgsc.bcm.edu	hg19	22	50609290	50609290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PANX2	NM_052839	exon1	c.T131C	p.L44P	TGCAGCTGAAGCT	.	55.0	4.0	88.0	0.0	.	69	.	.	Atlas-SNP
CPT1B	1375	hgsc.bcm.edu	hg19	22	51008052	51008052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	CPT1B	NM_001145135	exon18	c.A2188G	p.N730D	TCGTGTTCTCGCC	.	97.0	4.0	138.0	0.0	.	61	.	.	Atlas-SNP
GYG2	8908	hgsc.bcm.edu	hg19	X	2774545	2774545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GYG2	NM_003918	exon7	c.A587G	p.D196G	GGGCAGACCAAGG	.	80.0	4.0	108.0	0.0	.	39	.	.	Atlas-SNP
RPGR	6103	hgsc.bcm.edu	hg19	X	38145015	38145015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RPGR	NM_001034853	exon15	c.G3237T	p.R1079S	ATCCTGCCTTTCA	.	745.0	365.0	832.0	1.0	.	175	.	.	Atlas-SNP
ARAF	369	hgsc.bcm.edu	hg19	X	47430811	47430811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARAF	NM_001256196	exon16	c.T1785A	p.D595E	GGCCGATGAGTTG	.	146.0	73.0	137.0	0.0	.	67	.	.	Atlas-SNP
WDR13	64743	hgsc.bcm.edu	hg19	X	48458757	48458757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WDR13	NM_017883	exon5	c.T574C	p.S192P	TGCTGCTCACTCG	.	61.0	4.0	69.0	0.0	.	96	.	.	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53277936	53277936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	IQSEC2	NM_001111125	exon6	c.A2426G	p.N809S	TGCCGGTTCCCTA	.	95.0	4.0	111.0	0.0	.	195	.	.	Atlas-SNP
WNK3	65267	hgsc.bcm.edu	hg19	X	54335737	54335737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	WNK3	NM_001002838	exon4	c.G722T	p.R241L	TTAAATCGTTTTA	.	60.0	4.0	78.0	0.0	.	218	.	.	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	hg19	X	54784888	54784888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_198510	exon8	c.A1619G	p.N540S	CTGTTGTTGGTGG	.	98.0	4.0	77.0	0.0	.	.	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66766306	66766306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	AR	NM_000044	exon1	c.A1318G	p.T440A	CTCTTCACAGCCG	.	43.0	4.0	45.0	0.0	.	249	.	.	Atlas-SNP
PJA1	64219	hgsc.bcm.edu	hg19	X	68381880	68381880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	PJA1	NM_145119	exon2	c.A1202G	p.E401G	TCCCGCTCTTCTT	.	93.0	4.0	74.0	0.0	.	106	.	.	Atlas-SNP
ZMYM3	9203	hgsc.bcm.edu	hg19	X	70465850	70465850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZMYM3	NM_005096	exon16	c.T2671C	p.S891P	GCATCGAGAAAGG	.	89.0	4.0	96.0	0.0	.	137	.	.	Atlas-SNP
DACH2	117154	hgsc.bcm.edu	hg19	X	85404070	85404070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DACH2	NM_001139514	exon1	c.G446T	p.R149M	TCACCAGGAAAGA	.	59.0	4.0	61.0	0.0	.	263	.	.	Atlas-SNP
MUM1L1	139221	hgsc.bcm.edu	hg19	X	105450466	105450466	+	Silent	SNP	A	A	G	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MUM1L1	NM_152423	exon5	c.A1041G	p.E347E	TGAAGAACTTGAG	.	100.0	4.0	104.0	0.0	.	166	.	.	Atlas-SNP
RNF128	79589	hgsc.bcm.edu	hg19	X	105970375	105970375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	RNF128	NM_194463	exon1	c.G232T	p.E78X	CCGCTGGAGCCTG	.	208.0	75.0	192.0	0.0	.	74	.	.	Atlas-SNP
MID2	11043	hgsc.bcm.edu	hg19	X	107097839	107097839	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MID2	NM_012216	exon3	c.C721T	p.Q241X	TGACAGCAAACTC	.	101.0	5.0	106.0	0.0	.	122	.	.	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	hg19	X	117744275	117744275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	DOCK11	NM_144658	exon28	c.T2990C	p.V997A	ATCATGTCTTACA	.	99.0	4.0	88.0	0.0	.	185	.	.	Atlas-SNP
ZNF75D	7626	hgsc.bcm.edu	hg19	X	134426381	134426381	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ZNF75D	NM_007131	exon3	c.G430T	p.G144X	CCTTTCCCAGCTC	.	82.0	4.0	90.0	0.0	.	65	.	.	Atlas-SNP
MMGT1	93380	hgsc.bcm.edu	hg19	X	135053250	135053250	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	MMGT1	NM_173470	exon2	c.A99T	p.L33F	TTCTGTTAATCGC	.	484.0	245.0	578.0	0.0	.	14	.	.	Atlas-SNP
SOX3	6658	hgsc.bcm.edu	hg19	X	139587141	139587141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	SOX3	NM_005634	exon1	c.C85A	p.P29T	GGAAGGGTAGGCT	.	125.0	31.0	126.0	0.0	.	44	.	.	Atlas-SNP
GPR50	9248	hgsc.bcm.edu	hg19	X	150345211	150345211	+	Silent	SNP	G	G	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	GPR50	NM_004224	exon1	c.G18T	p.A6A	CCTAGCGGTTCCC	.	98.0	4.0	104.0	0.0	.	195	.	.	Atlas-SNP
SPATA31A1	647060	hgsc.bcm.edu	hg19	9	39361559	39361559	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001085452	exon4	c.3796delG	p.A1266fs	.	.	38.0	14.0	36.0	0.0	.	.	.	.	Atlas-INDEL
ARID1A	8289	hgsc.bcm.edu	hg19	1	27106505	27106506	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	ARID1A	NM_006015	exon20	c.6116_6117insT	p.Q2039fs	.	.	171.0	126.0	276.0	0.0	.	842	.	.	Atlas-Indel,Pindel
CADM2	253559	hgsc.bcm.edu	hg19	3	85932563	85932563	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	CADM2_ENST00000383699,NS,carcinoma,+2,2	CADM2	NM_001167675	exon4	c.360delC	p.V120fs	.	.	125.0	29.0	160.0	0.0	.	195	.	.	Atlas-Indel,Pindel
SPATA31A1	647060	hgsc.bcm.edu	hg19	9	39890810	39890810	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EP-A2KB-01A-11D-A183-10	TCGA-EP-A2KB-10A-01D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	305a5074-5384-45a0-985d-289b178d09f6	87df7481-7da6-412b-9452-d7ce62844ef4	.	.	NM_001085452	exon4	c.3796delG	p.A1266fs	.	.	65.0	21.0	19.0	0.0	.	.	.	.	Atlas-INDEL
