Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CROCC	9696	hgsc.bcm.edu	hg19	1	17256975	17256975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CROCC	NM_014675	exon7	c.G735T	p.Q245H	GGACCAGGCAGGC	.	123.0	25.0	150.0	0.0	.	185	.	.	Atlas-SNP
SLC44A5	204962	hgsc.bcm.edu	hg19	1	75684996	75684996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC44A5	NM_152697	exon16	c.A1212T	p.K404N	TATGACTTTGTAT	.	51.0	20.0	87.0	0.0	.	231	.	.	Atlas-SNP
CD2	914	hgsc.bcm.edu	hg19	1	117311336	117311336	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD2	NM_001767	exon5	c.C987A	p.P329P	CCTCCCCAGACCT	.	109.0	35.0	148.0	0.0	.	43	.	.	Atlas-SNP
SHC1	6464	hgsc.bcm.edu	hg19	1	154941042	154941042	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SHC1	NM_183001	exon4	c.T679G	p.F227V	CAGCAAATTTCAG	.	146.0	64.0	156.0	0.0	.	91	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158612680	158612680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPTA1	NM_003126	exon32	c.A4529G	p.E1510G	AGCTCCTCAAGGT	.	292.0	13.0	276.0	0.0	.	720	.	.	Atlas-SNP
PIGM	93183	hgsc.bcm.edu	hg19	1	160001525	160001525	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PIGM	NM_145167	exon1	c.G5C	p.G2A	GTGGAGCCCATGA	.	104.0	17.0	105.0	0.0	.	27	.	.	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	hg19	1	186277380	186277380	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.T2529A	p.A843A	GCCTGCTCCAACT	.	261.0	23.0	277.0	0.0	.	259	.	.	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	hg19	1	186277383	186277383	+	Silent	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.A2532C	p.P844P	TGCTCCAACTACT	.	266.0	29.0	275.0	0.0	.	259	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237802427	237802427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RYR2	NM_001035	exon46	c.G7041A	p.M2347I	AGCAATGGAAGAA	.	201.0	93.0	199.0	0.0	.	1273	.	.	Atlas-SNP
POMC	5443	hgsc.bcm.edu	hg19	2	25384548	25384548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	POMC	NM_001035256	exon4	c.C206G	p.P69R	GTCAGAGGCTGCT	.	80.0	19.0	113.0	0.0	.	33	.	.	Atlas-SNP
NXPH2	11249	hgsc.bcm.edu	hg19	2	139428887	139428887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NXPH2	NM_007226	exon2	c.A400G	p.I134V	CAACAATTTTCCC	.	113.0	30.0	191.0	0.0	.	63	.	.	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	hg19	2	179753268	179753268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC141	NM_173648	exon9	c.G1393T	p.G465C	GGTAACCCTCCAC	.	78.0	19.0	162.0	0.0	.	362	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198267752	198267752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SF3B1	NM_012433	exon13	c.T1727C	p.V576A	ATGACCACGAGGA	.	90.0	23.0	149.0	0.0	.	1038	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212543852	212543852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ERBB4	NM_001042599	exon13	c.G1547T	p.G516V	TCTGGCCCAGGTC	.	172.0	43.0	256.0	0.0	.	480	.	.	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	hg19	2	219619007	219619007	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TTLL4	NM_014640	exon20	c.T3495C	p.S1165S	CCTTTCTACCCAG	.	136.0	29.0	190.0	0.0	.	96	.	.	Atlas-SNP
SGPP2	130367	hgsc.bcm.edu	hg19	2	223423159	223423159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SGPP2	NM_152386	exon5	c.C742T	p.L248F	AGCCCCCTCTTCC	.	211.0	55.0	356.0	0.0	.	39	.	.	Atlas-SNP
GADL1	339896	hgsc.bcm.edu	hg19	3	30827899	30827899	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GADL1	NM_207359	exon14	c.1251-1G>A	.	AGGTACCTAAAAT	.	52.0	16.0	105.0	0.0	.	91	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41274911	41274911	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	CTNNB1,NS,carcinoma,0,5	CTNNB1	NM_001098209	exon8	c.T1161A	p.N387K	CAGGAATCTTTCA	.	100.0	22.0	162.0	0.0	.	4904	.	.	Atlas-SNP
CCDC36	339834	hgsc.bcm.edu	hg19	3	49294178	49294178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CCDC36	NM_001135197	exon8	c.G1248A	p.M416I	AAGTATGTTTTTG	.	81.0	17.0	145.0	0.0	.	77	.	.	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69084238	69084238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TMF1	NM_007114	exon9	c.G2180T	p.R727L	TCTGTACGCTGCA	.	122.0	41.0	183.0	0.0	.	77	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108220704	108220704	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MYH15	NM_014981	exon5	c.256-2A>G	.	AGACTCTGCAGAG	.	77.0	19.0	148.0	0.0	.	223	.	.	Atlas-SNP
CD200R1L	344807	hgsc.bcm.edu	hg19	3	112548190	112548190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD200R1L	NM_001008784	exon2	c.A88G	p.N30D	AATAGTTCTGTGT	.	157.0	34.0	231.0	0.0	.	47	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113720527	113720527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KIAA1407	NM_020817	exon13	c.A2078G	p.Q693R	TCCTCTTGGGCCT	.	211.0	63.0	319.0	0.0	.	80	.	.	Atlas-SNP
ENAM	10117	hgsc.bcm.edu	hg19	4	71508497	71508497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ENAM	NM_031889	exon9	c.A1354G	p.K452E	CCTACAAAGAATC	.	46.0	12.0	92.0	0.0	.	140	.	.	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	hg19	4	90856345	90856345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MMRN1	NM_007351	exon6	c.C1514A	p.S505Y	ATGAATCCCTCAA	.	134.0	26.0	216.0	0.0	.	174	.	.	Atlas-SNP
SMARCAD1	56916	hgsc.bcm.edu	hg19	4	95198291	95198291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SMARCAD1	NM_001128429	exon16	c.G2063T	p.R688I	TACGAAGAATGTT	.	84.0	19.0	125.0	0.0	.	97	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13794081	13794081	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DNAH5	NM_001369	exon48	c.T7974C	p.D2658D	ATTCACATCATCA	.	225.0	118.0	243.0	0.0	.	868	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19483500	19483500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	CDH18_ENST00000507958,colon,carcinoma,0,4	CDH18	NM_004934	exon12	c.C1792T	p.R598W	AGGTCCGCACACG	.	322.0	61.0	234.0	0.0	.	561	.	.	Atlas-SNP
RAD1	5810	hgsc.bcm.edu	hg19	5	34914840	34914840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RAD1	NM_002853	exon2	c.T158C	p.V53A	TTTTCCACTGTTA	.	185.0	116.0	179.0	1.0	.	17	.	.	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37226698	37226698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	C5orf42	NM_023073	exon12	c.A1999T	p.T667S	TTACAGTATTTGA	.	184.0	42.0	142.0	0.0	.	422	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71489897	71489897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MAP1B	NM_005909	exon5	c.G715A	p.V239I	GTGGAAGTCCCAT	.	83.0	13.0	144.0	0.0	.	243	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89989829	89989829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GPR98	NM_032119	exon33	c.C7256A	p.P2419H	GGGTGCCTGACCC	.	109.0	31.0	169.0	0.0	.	605	.	.	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153149817	153149817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	GRIA1_ENST00000544403,NS,malignant_melanoma,0,2	GRIA1	NM_001258021	exon13	c.G2142A	p.M714I	GGGGATGATTCGA	.	122.0	63.0	181.0	0.0	.	321	.	.	Atlas-SNP
ARG1	383	hgsc.bcm.edu	hg19	6	131904974	131904974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ARG1	NM_001244438	exon8	c.A919G	p.I307V	GTTGCAATAACCT	.	78.0	44.0	85.0	0.0	.	33	.	.	Atlas-SNP
PDK4	5166	hgsc.bcm.edu	hg19	7	95222151	95222151	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PDK4	NM_002612	exon4	c.C450T	p.V150V	ATTGGTGACTGGG	.	129.0	35.0	189.0	0.0	.	42	.	.	Atlas-SNP
ZBTB10	65986	hgsc.bcm.edu	hg19	8	81412172	81412172	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZBTB10	NM_023929	exon2	c.A1416G	p.P472P	AGCTCCAGAGTCT	.	77.0	16.0	68.0	0.0	.	51	.	.	Atlas-SNP
SLC39A4	55630	hgsc.bcm.edu	hg19	8	145641255	145641255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SLC39A4	NM_130849	exon2	c.C413T	p.P138L	AGGCCCGGGGTCA	.	111.0	7.0	19.0	0.0	.	54	.	.	Atlas-SNP
ZCCHC7	84186	hgsc.bcm.edu	hg19	9	37302184	37302184	+	Splice_Site	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZCCHC7	NM_032226	exon3	c.611-1G>A	.	TTTGTAGGAGAAG	.	38.0	7.0	75.0	0.0	.	56	.	.	Atlas-SNP
FAM120A	23196	hgsc.bcm.edu	hg19	9	96318785	96318785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FAM120A	NM_014612	exon13	c.G2396T	p.W799L	GTCCTTGGATGTA	.	132.0	34.0	180.0	0.0	.	105	.	.	Atlas-SNP
ZNF169	169841	hgsc.bcm.edu	hg19	9	97063227	97063227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF169	NM_194320	exon5	c.T1387C	p.C463R	CCTGATTGTGGGC	.	77.0	17.0	99.0	0.0	.	60	.	.	Atlas-SNP
ZNF169	169841	hgsc.bcm.edu	hg19	9	97063234	97063234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZNF169	NM_194320	exon5	c.G1394C	p.R465P	GTGGGCGTGGCTT	.	82.0	16.0	114.0	0.0	.	60	.	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7327859	7327859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	SFMBT2,NS,malignant_melanoma,0,1	SFMBT2	NM_001029880	exon5	c.C494A	p.S165X	GTCCTCGAACCAG	.	179.0	31.0	233.0	0.0	.	209	.	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7327860	7327860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SFMBT2	NM_001029880	exon5	c.T493A	p.S165T	TCCTCGAACCAGT	.	179.0	31.0	233.0	0.0	.	209	.	.	Atlas-SNP
ALOX5	240	hgsc.bcm.edu	hg19	10	45939709	45939709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALOX5	NM_000698	exon13	c.C1820T	p.A607V	TGTGGGCGCTGAG	.	118.0	11.0	102.0	0.0	.	88	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	50025347	50025347	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	WDFY4,NS,carcinoma,0,1	WDFY4	NM_020945	exon32	c.C5398T	p.Q1800X	GTGCTGCAGTTCC	.	63.0	19.0	83.0	0.0	.	205	.	.	Atlas-SNP
ACTR1A	10121	hgsc.bcm.edu	hg19	10	104247919	104247919	+	Silent	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACTR1A	NM_005736	exon4	c.T303G	p.T101T	TGAGAAAGTCTGC	.	73.0	17.0	129.0	0.0	.	26	.	.	Atlas-SNP
ADD3	120	hgsc.bcm.edu	hg19	10	111883814	111883814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ADD3	NM_001121	exon10	c.C1183G	p.R395G	CTCATTCGAGAGA	.	72.0	22.0	75.0	0.0	.	89	.	.	Atlas-SNP
USP47	55031	hgsc.bcm.edu	hg19	11	11963990	11963990	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	USP47	NM_017944	exon19	c.C2218G	p.L740V	GTTTTGCTACCTG	.	67.0	14.0	113.0	0.0	.	91	.	.	Atlas-SNP
OR10Q1	219960	hgsc.bcm.edu	hg19	11	57995759	57995759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	OR10Q1	NM_001004471	exon1	c.A589T	p.I197F	CGCGGATGTCAGC	.	114.0	42.0	172.0	0.0	.	79	.	.	Atlas-SNP
MS4A15	219995	hgsc.bcm.edu	hg19	11	60543106	60543106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MS4A15	NM_001098835	exon7	c.G641A	p.S214N	CCTTCAGCGCAGA	.	45.0	17.0	99.0	0.0	.	37	.	.	Atlas-SNP
TECTA	7007	hgsc.bcm.edu	hg19	11	120989400	120989400	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TECTA	NM_005422	exon6	c.C1176T	p.I392I	TCTCATCCCCAAA	.	54.0	12.0	89.0	0.0	.	329	.	.	Atlas-SNP
UBE2N	7334	hgsc.bcm.edu	hg19	12	93835640	93835640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	UBE2N,NS,carcinoma,0,1	UBE2N	NM_003348	exon1	c.G21T	p.R7S	GATGATCCTGCGG	.	199.0	55.0	258.0	0.0	.	20	.	.	Atlas-SNP
DHX37	57647	hgsc.bcm.edu	hg19	12	125451669	125451669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DHX37	NM_032656	exon11	c.G1504A	p.E502K	CTTTACCTTGTGG	.	87.0	7.0	103.0	0.0	.	114	.	.	Atlas-SNP
PGAM5	192111	hgsc.bcm.edu	hg19	12	133291565	133291565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PGAM5	NM_138575	exon2	c.C313T	p.H105Y	ATCAGGCATTCCC	.	112.0	25.0	185.0	0.0	.	18	.	.	Atlas-SNP
ZMYM5	9205	hgsc.bcm.edu	hg19	13	20411886	20411886	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ZMYM5	NM_001039650	exon6	c.A948G	p.T316T	ACAAGATGTACTA	.	76.0	12.0	168.0	0.0	.	73	.	.	Atlas-SNP
STARD13	90627	hgsc.bcm.edu	hg19	13	33703451	33703451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	STARD13,NS,carcinoma,0,1	STARD13	NM_178006	exon5	c.C1363G	p.R455G	TGACTCGGCTGGC	.	66.0	20.0	122.0	1.0	.	100	.	.	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	hg19	13	38211433	38211433	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TRPC4	NM_003306	exon11	c.A2556G	p.L852L	ATGAAATAACCCA	.	72.0	26.0	141.0	0.0	.	389	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39261907	39261907	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	FREM2	NM_207361	exon1	c.C426A	p.G142G	CCTGGGCGCGCGC	.	42.0	17.0	12.0	0.0	.	385	.	.	Atlas-SNP
EFNB2	1948	hgsc.bcm.edu	hg19	13	107164993	107164993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	EFNB2	NM_004093	exon2	c.C290T	p.P97L	AGGAGAGGGGTAT	.	123.0	36.0	225.0	0.0	.	39	.	.	Atlas-SNP
MNS1	55329	hgsc.bcm.edu	hg19	15	56748716	56748716	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MNS1	NM_018365	exon3	c.G229C	p.E77Q	TTTCTTCTGCCTG	.	104.0	32.0	279.0	0.0	.	39	.	.	Atlas-SNP
SPESP1	246777	hgsc.bcm.edu	hg19	15	69238762	69238762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SPESP1	NM_145658	exon2	c.G889C	p.E297Q	GACATCGAAACTG	.	51.0	12.0	127.0	0.0	.	39	.	.	Atlas-SNP
TBC1D21	161514	hgsc.bcm.edu	hg19	15	74177139	74177139	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	TBC1D21	NM_153356	exon5	c.A385C	p.I129L	CAGAAAATCTATG	.	88.0	33.0	109.0	0.0	.	38	.	.	Atlas-SNP
WDR24	84219	hgsc.bcm.edu	hg19	16	735892	735892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDR24	NM_032259	exon5	c.C1550T	p.S517L	GTGGCCGAGGAGT	.	93.0	30.0	132.0	0.0	.	111	.	.	Atlas-SNP
VWA3A	146177	hgsc.bcm.edu	hg19	16	22162149	22162149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	VWA3A	NM_173615	exon30	c.C3263A	p.S1088Y	CCATTTCCTTGAA	.	70.0	17.0	108.0	0.0	.	115	.	.	Atlas-SNP
VWA3A	146177	hgsc.bcm.edu	hg19	16	22162150	22162150	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	VWA3A	NM_173615	exon30	c.C3264A	p.S1088S	CATTTCCTTGAAC	.	70.0	15.0	108.0	0.0	.	115	.	.	Atlas-SNP
SF3B3	23450	hgsc.bcm.edu	hg19	16	70595533	70595533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SF3B3	NM_012426	exon17	c.G2134A	p.V712I	CCTCAGGTATTGG	.	46.0	8.0	79.0	0.0	.	99	.	.	Atlas-SNP
PER1	5187	hgsc.bcm.edu	hg19	17	8051980	8051980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PER1	NM_002616	exon8	c.A1030G	p.I344V	AATGGATGCGCTC	.	72.0	19.0	64.0	0.0	.	104	.	.	Atlas-SNP
CD300C	10871	hgsc.bcm.edu	hg19	17	72539019	72539019	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD300C	NM_006678	exon3	c.G508T	p.E170X	TGGGTTCGGGGCT	.	118.0	37.0	144.0	0.0	.	41	.	.	Atlas-SNP
CD300C	10871	hgsc.bcm.edu	hg19	17	72539020	72539020	+	Silent	SNP	G	G	T	rs147705680	alternate_allele	TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CD300C	NM_006678	exon3	c.C507A	p.P169P	GGGTTCGGGGCTG	.	121.0	37.0	145.0	0.0	.	41	.	G|1.000;A|0.000	Atlas-SNP
ACOX1	51	hgsc.bcm.edu	hg19	17	73975154	73975154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ACOX1	NM_007292	exon1	c.A1C	p.M1L	GGTTCATGGCGAC	.	36.0	8.0	61.0	0.0	.	85	.	.	Atlas-SNP
OGFOD3	79701	hgsc.bcm.edu	hg19	17	80373361	80373361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	NM_175902	exon2	c.G217A	p.V73I	CCAGGACCTCTGC	.	77.0	25.0	74.0	0.0	.	.	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50918256	50918256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DCC	NM_005215	exon17	c.A2687G	p.K896R	AATACAAGGTGAA	.	49.0	20.0	52.0	0.0	.	360	.	.	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4224480	4224480	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ANKRD24	NM_133475	exon22	c.G3419C	p.R1140T	TGCAGAGACTCCA	.	48.0	15.0	84.0	0.0	.	180	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8994178	8994178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	MUC16	NM_024690	exon65	c.G41507T	p.G13836V	AGAGGGCCAACAC	.	93.0	22.0	123.0	0.0	.	4315	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38384931	38384931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	WDR87	NM_031951	exon4	c.G1295A	p.R432Q	AGACCCCGCCCCA	.	68.0	16.0	153.0	0.0	.	191	.	.	Atlas-SNP
KLK8	11202	hgsc.bcm.edu	hg19	19	51503826	51503826	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	KLK8	NM_144505	exon3	c.A219T	p.A73A	CTCCTGTGCCCTG	.	74.0	28.0	101.0	0.0	.	46	.	.	Atlas-SNP
LILRA6	79168	hgsc.bcm.edu	hg19	19	54746124	54746124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRA6	NM_024318	exon3	c.G133A	p.V45M	TGGTCACGGGGCT	.	379.0	57.0	601.0	0.0	.	75	.	.	Atlas-SNP
LILRB4	11006	hgsc.bcm.edu	hg19	19	55176617	55176617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	LILRB4	NM_006847	exon6	c.C743T	p.S248L	CAGGGTCAGTCCC	.	162.0	38.0	225.0	0.0	.	86	.	.	Atlas-SNP
CHRNA4	1137	hgsc.bcm.edu	hg19	20	61978128	61978128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	CHRNA4	NM_000744	exon6	c.G1846T	p.G616C	AGAGGCCCACCGT	.	72.0	29.0	57.0	0.0	.	98	.	.	Atlas-SNP
SAMSN1	64092	hgsc.bcm.edu	hg19	21	15873032	15873032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	SAMSN1	NM_001256370	exon7	c.T790C	p.C264R	TTTTGCAAATAAT	.	98.0	12.0	180.0	0.0	.	112	.	.	Atlas-SNP
DYRK1A	1859	hgsc.bcm.edu	hg19	21	38865436	38865436	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	DYRK1A	NM_001396	exon7	c.G1069T	p.G357X	CACACTGGAGAAC	.	73.0	16.0	132.0	0.0	.	85	.	.	Atlas-SNP
GAB4	128954	hgsc.bcm.edu	hg19	22	17450871	17450871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	GAB4	NM_001037814	exon4	c.C899A	p.T300N	CCTCTGGTGTGGC	.	77.0	29.0	152.0	0.0	.	95	.	.	Atlas-SNP
RASD2	23551	hgsc.bcm.edu	hg19	22	35947948	35947948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	RASD2	NM_014310	exon3	c.G670A	p.E224K	GTCAAGGAGATGG	.	54.0	15.0	74.0	0.0	.	34	.	.	Atlas-SNP
PCDH11Y	83259	hgsc.bcm.edu	hg19	Y	4968507	4968507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PCDH11Y	NM_032972	exon2	c.A2888G	p.D963G	AGCCTGACAGCCC	.	46.0	21.0	59.0	0.0	.	163	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12699	12699	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	.	ENST00000361567	exon1	c.A363G	p.L121L	ATATCTACTCATC	.	230.0	211.0	4.0	0.0	.	.	.	.	Atlas-SNP
PRDM16	63976	hgsc.bcm.edu	hg19	1	3322119	3322120	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRDM16	NM_022114	exon8	c.1093_1094insC	p.A365fs	.	.	84.0	11.0	39.0	0.0	.	147	.	.	Atlas-INDEL
NLRP8	126205	hgsc.bcm.edu	hg19	19	56473481	56473482	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NLRP8	NM_176811	exon4	c.2090_2091del	p.697_697del	.	.	142.0	15.0	173.0	0.0	.	225	.	.	Atlas-Indel,Pindel
ALB	213	hgsc.bcm.edu	hg19	4	74274387	74274388	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	ALB	NM_000477	exon4	c.347_348insA	p.A116fs	.	.	78.0	20.0	141.0	0.0	.	132	.	.	Atlas-INDEL
NFKBIA	4792	hgsc.bcm.edu	hg19	14	35871997	35872005	+	In_Frame_Del	DEL	CCAAGGACA	CCAAGGACA	-	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	CCAAGGACA	CCAAGGACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	NFKBIA	NM_020529	exon4	c.609_617del	p.203_206del	.	.	76.0	12.0	110.0	0.0	.	28	.	.	Atlas-INDEL
PRG4	10216	hgsc.bcm.edu	hg19	1	186277360	186277383	+	In_Frame_Del	DEL	ACTACCCCCAAGAAGCCTGCTCCA	ACTACCCCCAAGAAGCCTGCTCCA	-	novel		TCGA-EP-A3JL-01A-11D-A20W-10	TCGA-EP-A3JL-10A-01D-A20W-10	ACTACCCCCAAGAAGCCTGCTCCA	ACTACCCCCAAGAAGCCTGCTCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3c3e9b90-d106-48ce-a6d4-999adc5870e0	87055f49-edc2-4751-a7c5-8715fea95a43	.	PRG4	NM_005807	exon7	c.2508_2531del	p.836_844del	.	.	262.0	16.0	272.0	0.0	.	259	.	.	Pindel
