Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SSU72	29101	hgsc.bcm.edu	hg19	1	1509930	1509930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	SSU72_ENST00000359060,NS,carcinoma,0,2	SSU72	NM_014188	exon1	c.C8T	p.S3L	GGGGACGACGGCA	.	60.0	3.0	184.0	0.0	.	15	.	.	Atlas-SNP
DFFB	1677	hgsc.bcm.edu	hg19	1	3775365	3775365	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	DFFB,NS,carcinoma,0,2	DFFB	NM_004402	exon2	c.C198T	p.N66N	CGACAACGCCGAG	.	94.0	4.0	104.0	0.0	.	30	.	.	Atlas-SNP
TAS1R1	80835	hgsc.bcm.edu	hg19	1	6638906	6638906	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAS1R1	NM_138697	exon6	c.G1788A	p.V596V	CCCTGTGGTGAGG	.	100.0	5.0	107.0	0.0	.	76	.	.	Atlas-SNP
UBE4B	10277	hgsc.bcm.edu	hg19	1	10166449	10166449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	UBE4B_ENST00000343090,NS,carcinoma,0,1	UBE4B	NM_001105562	exon7	c.T1004C	p.V335A	ACACTGTCACTCA	.	60.0	3.0	102.0	0.0	.	233	.	.	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16263967	16263967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPEN	NM_015001	exon12	c.T10336C	p.S3446P	CCAGTCTCTCTTC	.	74.0	6.0	50.0	0.0	.	374	.	.	Atlas-SNP
EPHB2	2048	hgsc.bcm.edu	hg19	1	23232489	23232489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EPHB2	NM_004442	exon10	c.G1778T	p.G593V	CCCCAGGCATGAA	.	89.0	38.0	99.0	0.0	.	257	.	.	Atlas-SNP
ASAP3	55616	hgsc.bcm.edu	hg19	1	23759640	23759640	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ASAP3	NM_017707	exon22	c.T2253C	p.C751C	CGGGGGACAGTCC	.	164.0	7.0	118.0	0.0	.	65	.	.	Atlas-SNP
GMEB1	10691	hgsc.bcm.edu	hg19	1	29040628	29040628	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GMEB1	NM_006582	exon10	c.T1065C	p.D355D	CCAGGATCACAGG	.	89.0	4.0	88.0	0.0	.	28	.	.	Atlas-SNP
SFPQ	6421	hgsc.bcm.edu	hg19	1	35656352	35656352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SFPQ	NM_005066	exon3	c.A1262C	p.K421T	GCTGGCTTAGAAG	.	155.0	57.0	137.0	0.0	.	51	.	.	Atlas-SNP
KIAA0319L	79932	hgsc.bcm.edu	hg19	1	35928258	35928258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIAA0319L	NM_024874	exon8	c.T1258C	p.S420P	GCAAAGAGATCTC	.	63.0	4.0	54.0	0.0	.	156	.	.	Atlas-SNP
MYCL1	4610	hgsc.bcm.edu	hg19	1	40363211	40363211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	MYCL1_ENST00000397332,NS,carcinoma,0,1	MYCL1	NM_001033082	exon3	c.A1018G	p.T340A	CCAGGGTGGGCAC	.	108.0	5.0	101.0	0.0	.	36	.	.	Atlas-SNP
ZNF691	51058	hgsc.bcm.edu	hg19	1	43316763	43316763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF691	NM_001242739	exon4	c.T227C	p.L76P	AGAGCCTGTCGGA	.	95.0	4.0	67.0	0.0	.	30	.	.	Atlas-SNP
ERI3	79033	hgsc.bcm.edu	hg19	1	44778868	44778868	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ERI3	NM_024066	exon5	c.T639C	p.G213G	TGGCTGACCATCC	.	154.0	7.0	126.0	0.0	.	39	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104	bycluster	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NRD1	NM_001101662	exon2	c.A449T	p.E150V	TCTTCCTCCACCT	.	261.0	44.0	239.0	0.0	.	89	.	T|0.024;A|0.976	Atlas-SNP
AK4	205	hgsc.bcm.edu	hg19	1	65690526	65690526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AK4	NM_203464	exon5	c.T530C	p.V177A	AAGACGTGGCAAA	.	122.0	6.0	108.0	0.0	.	22	.	.	Atlas-SNP
TCTEX1D1	200132	hgsc.bcm.edu	hg19	1	67241997	67241997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TCTEX1D1	NM_152665	exon4	c.C247G	p.H83D	GTCAATCATATTT	.	231.0	95.0	174.0	0.0	.	27	.	.	Atlas-SNP
SLC35D1	23169	hgsc.bcm.edu	hg19	1	67512974	67512974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC35D1	NM_015139	exon7	c.T610C	p.Y204H	TTACGTATGCACC	.	75.0	4.0	61.0	0.0	.	22	.	.	Atlas-SNP
PTGER3	5733	hgsc.bcm.edu	hg19	1	71478142	71478142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PTGER3	NM_001126044	exon2	c.A923T	p.N308I	GTCTGATTGAAGA	.	99.0	35.0	65.0	0.0	.	246	.	.	Atlas-SNP
FAM73A	374986	hgsc.bcm.edu	hg19	1	78309009	78309009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAM73A	NM_001270384	exon8	c.A913G	p.T305A	GATATCACCATGA	.	63.0	4.0	47.0	0.0	.	56	.	.	Atlas-SNP
RPAP2	79871	hgsc.bcm.edu	hg19	1	92789250	92789250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RPAP2	NM_024813	exon8	c.C773G	p.S258C	CTAACTCCAAACA	.	149.0	73.0	125.0	0.0	.	48	.	.	Atlas-SNP
MTF2	22823	hgsc.bcm.edu	hg19	1	93575851	93575851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MTF2	NM_001164392	exon2	c.A70G	p.T24A	CAAAAGACCCCAA	.	140.0	8.0	120.0	0.0	.	51	.	.	Atlas-SNP
F3	2152	hgsc.bcm.edu	hg19	1	95001634	95001634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	F3	NM_001993	exon3	c.A299G	p.K100R	GTCTGCTTCACAT	.	121.0	5.0	108.0	0.0	.	21	.	.	Atlas-SNP
GPSM2	29899	hgsc.bcm.edu	hg19	1	109465167	109465167	+	Silent	SNP	T	T	A	rs79761186		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPSM2	NM_013296	exon13	c.T1569A	p.T523T	AACAACTTCTTCC	.	25.0	8.0	10.0	0.0	.	56	.	.	Atlas-SNP
GPSM2	29899	hgsc.bcm.edu	hg19	1	109465168	109465168	+	Missense_Mutation	SNP	T	T	A	rs201481482		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPSM2	NM_013296	exon13	c.T1570A	p.S524T	ACAACTTCTTCCA	.	25.0	8.0	7.0	0.0	.	56	.	.	Atlas-SNP
RSBN1	54665	hgsc.bcm.edu	hg19	1	114354478	114354478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RSBN1	NM_018364	exon1	c.A557G	p.K186R	TGGCCCTTATGCT	.	74.0	4.0	77.0	0.0	.	71	.	.	Atlas-SNP
PTPN22	26191	hgsc.bcm.edu	hg19	1	114380814	114380814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PTPN22	NM_015967	exon13	c.C1208T	p.P403L	ACTATTGGAAATG	.	124.0	45.0	126.0	0.0	.	90	.	.	Atlas-SNP
AMPD1	270	hgsc.bcm.edu	hg19	1	115215782	115215782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AMPD1	NM_000036	exon16	c.T2296C	p.C766R	CATAACACCAGGT	.	149.0	6.0	164.0	0.0	.	223	.	.	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	hg19	1	117122269	117122269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IGSF3	NM_001542	exon11	c.C3139G	p.P1047A	CTGTTGGGTCGTC	.	89.0	5.0	93.0	0.0	.	294	.	.	Atlas-SNP
TTF2	8458	hgsc.bcm.edu	hg19	1	117634026	117634026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TTF2	NM_003594	exon16	c.A2665G	p.S889G	CCATTCAGTAGAG	.	71.0	4.0	46.0	0.0	.	92	.	.	Atlas-SNP
CHD1L	9557	hgsc.bcm.edu	hg19	1	146737617	146737617	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHD1L	NM_004284	exon8	c.C766G	p.P256A	TTGCAGCCATTTC	.	94.0	4.0	109.0	0.0	.	72	.	.	Atlas-SNP
MCL1	4170	hgsc.bcm.edu	hg19	1	150551951	150551951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MCL1	NM_182763	exon1	c.C56T	p.A19V	AAGCCGGCCCCCC	.	138.0	33.0	82.0	0.0	.	27	.	.	Atlas-SNP
THEM4	117145	hgsc.bcm.edu	hg19	1	151867506	151867506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	THEM4	NM_053055	exon2	c.A264C	p.Q88H	GAAGTCTTGAATC	.	241.0	11.0	97.0	0.0	.	19	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DENND4B	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	143.0	48.0	14.0	0.0	.	210	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153907315	153907315	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DENND4B	NM_014856	exon18	c.G2694A	p.Q898Q	CTGCTGCTGCTGC	.	182.0	14.0	86.0	0.0	.	210	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155448559	155448559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ASH1L	NM_018489	exon3	c.A4102G	p.S1368G	TAAGGCTGTGCAT	.	146.0	6.0	50.0	0.0	.	279	.	.	Atlas-SNP
YY1AP1	55249	hgsc.bcm.edu	hg19	1	155630158	155630158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	YY1AP1	NM_001198903	exon10	c.T1957C	p.S653P	CAGGGGAGGGCAT	.	247.0	14.0	82.0	0.0	.	104	.	.	Atlas-SNP
IFI16	3428	hgsc.bcm.edu	hg19	1	158988074	158988074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IFI16	NM_005531	exon5	c.A605T	p.K202I	TCCAAAAACGCCC	.	364.0	120.0	128.0	0.0	.	111	.	.	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	hg19	1	160151564	160151564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP1A4	NM_144699	exon19	c.T2827C	p.S943P	ATCATCTCCAAGA	.	447.0	18.0	175.0	0.0	.	167	.	.	Atlas-SNP
F5	2153	hgsc.bcm.edu	hg19	1	169555549	169555549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	F5	NM_000130	exon1	c.A76G	p.T26A	CTTCTGTCCCTTG	.	220.0	10.0	96.0	0.0	.	301	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171510373	171510373	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_015172	exon16	c.C3762T	p.V1254V	AGTTGTCCCCAAA	.	431.0	29.0	157.0	0.0	.	.	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179564922	179564922	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TDRD5	NM_173533	exon4	c.C800G	p.S267X	AGACTTCAAGACT	.	259.0	42.0	102.0	0.0	.	149	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181452881	181452881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CACNA1E	NM_001205293	exon1	c.A1G	p.M1V	CTCAGGATGGCTC	.	75.0	4.0	39.0	0.0	.	778	.	.	Atlas-SNP
NVL	4931	hgsc.bcm.edu	hg19	1	224514099	224514099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NVL	NM_001243147	exon2	c.T125C	p.V42A	CTGTACACTCTTT	.	110.0	5.0	50.0	0.0	.	74	.	.	Atlas-SNP
JMJD4	65094	hgsc.bcm.edu	hg19	1	227922402	227922402	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	JMJD4	NM_023007	exon2	c.C516T	p.G172G	GGAGTAGCCCGCC	.	562.0	285.0	287.0	0.0	.	28	.	.	Atlas-SNP
HEATR1	55127	hgsc.bcm.edu	hg19	1	236749177	236749177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HEATR1	NM_018072	exon16	c.G1992C	p.M664I	CTCAATCATCTTC	.	274.0	17.0	149.0	0.0	.	197	.	.	Atlas-SNP
MTR	4548	hgsc.bcm.edu	hg19	1	237038042	237038042	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MTR	NM_000254	exon24	c.A2490G	p.S830S	CCTGTCAGGACTC	.	75.0	4.0	31.0	0.0	.	127	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1677567	1677567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PXDN	NM_012293	exon9	c.A866G	p.K289R	TCTGTCTTCATGC	.	121.0	5.0	108.0	0.0	.	255	.	.	Atlas-SNP
ALLC	55821	hgsc.bcm.edu	hg19	2	3729256	3729256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALLC	NM_018436	exon6	c.A331G	p.R111G	GGAACCAGGACAG	.	79.0	4.0	79.0	0.0	.	61	.	.	Atlas-SNP
HS1BP3	64342	hgsc.bcm.edu	hg19	2	20823705	20823705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HS1BP3	NM_022460	exon6	c.G871T	p.G291W	TGGGCCCTCCACT	.	103.0	33.0	84.0	0.0	.	33	.	.	Atlas-SNP
ALK	238	hgsc.bcm.edu	hg19	2	29451807	29451807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALK	NM_004304	exon16	c.G2758T	p.G920C	CGAAACCCCCTCT	.	385.0	164.0	331.0	1.0	.	533	.	.	Atlas-SNP
CEP68	23177	hgsc.bcm.edu	hg19	2	65296913	65296913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP68	NM_015147	exon2	c.T335C	p.L112P	GAGACCTTCTGCT	.	57.0	4.0	54.0	0.0	.	69	.	.	Atlas-SNP
REV1	51455	hgsc.bcm.edu	hg19	2	100029414	100029414	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	REV1	NM_016316	exon14	c.1952-1G>A	.	CAACTCCTAGGAA	.	117.0	46.0	120.0	0.0	.	100	.	.	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	hg19	2	131801915	131801915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGEF4	NM_032995	exon12	c.A1643G	p.D548G	GGCTGGACATGGA	.	209.0	9.0	162.0	0.0	.	89	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141819744	141819744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRP1B	NM_018557	exon8	c.A1112C	p.Q371P	GCTGGCTGCTCTG	.	173.0	62.0	163.0	0.0	.	1315	.	.	Atlas-SNP
LY75	4065	hgsc.bcm.edu	hg19	2	160676430	160676430	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LY75	NM_002349	exon29	c.T3960C	p.N1320N	AGACTTATCTAGA	.	98.0	4.0	64.0	0.0	.	151	.	.	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	hg19	2	166032778	166032778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCN3A	NM_001081676	exon3	c.A127G	p.N43D	CATCATTATCTTG	.	170.0	22.0	119.0	0.0	.	544	.	.	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	hg19	2	166032779	166032779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCN3A	NM_001081676	exon3	c.T126A	p.D42E	ATCATTATCTTGT	.	170.0	9.0	121.0	0.0	.	544	.	.	Atlas-SNP
PDE11A	50940	hgsc.bcm.edu	hg19	2	178545631	178545631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	PDE11A_ENST00000358450,NS,carcinoma,0,2	PDE11A	NM_016953	exon16	c.G2346T	p.E782D	TCTCCTCCTGCAG	.	24.0	10.0	38.0	0.0	.	283	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179659759	179659759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TTN	NM_001267550	exon7	c.A1135G	p.R379G	CGTATCTCCCTTC	.	57.0	4.0	31.0	0.0	.	18412	.	.	Atlas-SNP
SSFA2	6744	hgsc.bcm.edu	hg19	2	182781149	182781149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	SSFA2,NS,carcinoma,0,1	SSFA2	NM_001130445	exon11	c.T2782C	p.S928P	AATCTTTCACAGG	.	70.0	3.0	65.0	0.0	.	130	.	.	Atlas-SNP
COL5A2	1290	hgsc.bcm.edu	hg19	2	189922082	189922082	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL5A2	NM_000393	exon34	c.A2301G	p.R767R	AATTCCTCTTTCT	.	90.0	5.0	86.0	0.0	.	230	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216239959	216239959	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FN1	NM_212482	exon38	c.T6135C	p.G2045G	TGTGACACCAGGG	.	116.0	5.0	110.0	0.0	.	521	.	.	Atlas-SNP
CCDC108	255101	hgsc.bcm.edu	hg19	2	219892384	219892384	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC108	NM_194302	exon13	c.C2199T	p.F733F	GATGGCGAAGGCT	.	255.0	84.0	185.0	0.0	.	208	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238244875	238244875	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.,7	COL6A3	NM_004369	exon40	c.T8868C	p.A2956A	AGCAGCAGCGGGG	.	47.0	5.0	39.0	1.0	.	608	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238244877	238244877	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL6A3	NM_004369	exon40	c.G8866C	p.A2956P	CAGCAGCGGGGGG	.	46.0	4.0	40.0	0.0	.	608	.	.	Atlas-SNP
PER2	8864	hgsc.bcm.edu	hg19	2	239165617	239165617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PER2	NM_022817	exon17	c.A2011G	p.S671G	TGTAGCTGCACTG	.	113.0	6.0	78.0	0.0	.	85	.	.	Atlas-SNP
TMEM43	79188	hgsc.bcm.edu	hg19	3	14180787	14180787	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM43	NM_024334	exon11	c.C990T	p.L330L	GATCCTCTACACC	.	174.0	72.0	109.0	0.0	.	33	.	.	Atlas-SNP
GOLGA4	2803	hgsc.bcm.edu	hg19	3	37367411	37367411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GOLGA4	NM_001172713	exon15	c.A4100G	p.K1367R	AGTTGAAGAAAGA	.	76.0	4.0	54.0	0.0	.	173	.	.	Atlas-SNP
DHX30	22907	hgsc.bcm.edu	hg19	3	47882442	47882442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DHX30	NM_138615	exon7	c.T442C	p.S148P	TTTGGCTCCCCTG	.	161.0	8.0	112.0	0.0	.	101	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48697030	48697030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CELSR3	NM_001407	exon1	c.A3038G	p.E1013G	GTGGGCTCAATGG	.	86.0	4.0	68.0	0.0	.	237	.	.	Atlas-SNP
CCDC66	285331	hgsc.bcm.edu	hg19	3	56650051	56650051	+	Missense_Mutation	SNP	A	A	T	rs74463118		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC66	NM_001141947	exon13	c.A1813T	p.T605S	TCTACGACTTCTA	.	99.0	5.0	96.0	0.0	.	145	.	.	Atlas-SNP
PDHB	5162	hgsc.bcm.edu	hg19	3	58415861	58415861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PDHB	NM_000925	exon7	c.A694G	p.R232G	CTTGCCTTTCTAT	.	98.0	4.0	79.0	0.0	.	19	.	.	Atlas-SNP
MITF	4286	hgsc.bcm.edu	hg19	3	69813025	69813025	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MITF	NM_006722	exon1	c.C33T	p.F11F	GGTTTTCCCACGA	.	94.0	37.0	81.0	0.0	.	156	.	.	Atlas-SNP
DRD3	1814	hgsc.bcm.edu	hg19	3	113850192	113850192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DRD3	NM_033663	exon6	c.A779C	p.Q260P	GTGTCCTGGCAGA	.	195.0	67.0	120.0	0.0	.	76	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121186373	121186373	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	POLQ	NM_199420	exon24	c.T6960C	p.P2320P	TGGGAAAGGCACA	.	89.0	4.0	84.0	0.0	.	273	.	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	hg19	3	122419294	122419294	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PARP14	NM_017554	exon6	c.T1893C	p.T631T	AAACACTGTAATC	.	77.0	4.0	85.0	0.0	.	242	.	.	Atlas-SNP
ITGB5	3693	hgsc.bcm.edu	hg19	3	124515576	124515576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGB5	NM_002213	exon10	c.A1352G	p.D451G	AGGCTGTCCCGGA	.	106.0	6.0	119.0	0.0	.	66	.	.	Atlas-SNP
SEC61A1	29927	hgsc.bcm.edu	hg19	3	127775642	127775642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SEC61A1	NM_013336	exon5	c.A311G	p.D104G	TTGGTGACACCCC	.	105.0	6.0	82.0	0.0	.	39	.	.	Atlas-SNP
KIAA1257	57501	hgsc.bcm.edu	hg19	3	128694728	128694728	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIAA1257	NM_020741	exon7	c.A915G	p.T305T	GGTTGGTGTTCTT	.	90.0	4.0	64.0	0.0	.	33	.	.	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129547013	129547013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMCC1	NM_001017395	exon3	c.T209C	p.V70A	TGCTGCACATCAT	.	93.0	4.0	69.0	0.0	.	105	.	.	Atlas-SNP
P2RY12	64805	hgsc.bcm.edu	hg19	3	151055763	151055763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	P2RY12	NM_022788	exon3	c.G871T	p.A291S	GGCATGCATTTAA	.	66.0	46.0	111.0	0.0	.	36	.	.	Atlas-SNP
ARHGEF26	26084	hgsc.bcm.edu	hg19	3	153847474	153847474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGEF26	NM_001251962	exon4	c.A1235G	p.K412R	ACCATAAGCCATT	.	93.0	4.0	198.0	0.0	.	158	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	156183439	156183439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KCNAB1	NM_172160	exon7	c.A535G	p.T179A	GCTGAAACAGAAA	.	100.0	4.0	86.0	0.0	.	176	.	.	Atlas-SNP
MFSD1	64747	hgsc.bcm.edu	hg19	3	158527010	158527010	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MFSD1	NM_022736	exon6	c.T630C	p.A210A	ATATGCTGTGAGC	.	74.0	4.0	58.0	0.0	.	88	.	.	Atlas-SNP
ABCF3	55324	hgsc.bcm.edu	hg19	3	183907218	183907218	+	Missense_Mutation	SNP	A	A	G	rs200262122	bycluster	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	ABCF3,colon,carcinoma,0,1	ABCF3	NM_018358	exon12	c.A1100G	p.E367G	GGCTGGAGAATTA	.	164.0	18.0	115.0	1.0	.	72	.	.	Atlas-SNP
ABCF3	55324	hgsc.bcm.edu	hg19	3	183907370	183907370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABCF3	NM_018358	exon13	c.T1139C	p.V380A	TAGTCGTCTCCCA	.	151.0	8.0	124.0	0.0	.	72	.	.	Atlas-SNP
SST	6750	hgsc.bcm.edu	hg19	3	187388043	187388043	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SST	NM_001048	exon1	c.C37T	p.L13L	TGGACAGCGCAGC	.	108.0	50.0	131.0	0.0	.	20	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195513683	195513683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MUC4	NM_018406	exon2	c.A4768G	p.T1590A	AGGAAGTGTCGGT	.	193.0	9.0	157.0	0.0	.	1505	.	.	Atlas-SNP
UVSSA	57654	hgsc.bcm.edu	hg19	4	1377635	1377635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	KIAA1530,NS,carcinoma,0,1	.	NM_020894	exon13	c.G1943A	p.G648D	GGAAAGGCAGGGG	.	48.0	24.0	64.0	0.0	.	.	.	.	Atlas-SNP
RAB28	9364	hgsc.bcm.edu	hg19	4	13462450	13462450	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RAB28	NM_004249	exon4	c.A264G	p.G88G	GAGGACTCCCTGT	.	104.0	5.0	63.0	0.0	.	56	.	.	Atlas-SNP
RBM47	54502	hgsc.bcm.edu	hg19	4	40440472	40440472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RBM47	NM_001098634	exon4	c.A439G	p.S147G	CCACGCTGCAGCA	.	95.0	4.0	96.0	0.0	.	146	.	.	Atlas-SNP
NFXL1	152518	hgsc.bcm.edu	hg19	4	47916121	47916121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NFXL1	NM_152995	exon2	c.G100A	p.G34R	CTCCTCCGGCGCC	.	37.0	15.0	89.0	0.0	.	79	.	.	Atlas-SNP
SRP72	6731	hgsc.bcm.edu	hg19	4	57340277	57340277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SRP72	NM_006947	exon4	c.A412G	p.N138D	GTCCGAAACTCCC	.	106.0	13.0	128.0	0.0	.	59	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79367953	79367953	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FRAS1	NM_025074	exon43	c.A5929C	p.S1977R	GTGATAAGCAATT	.	125.0	5.0	108.0	0.0	.	779	.	.	Atlas-SNP
PKD2	5311	hgsc.bcm.edu	hg19	4	88940628	88940628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PKD2	NM_000297	exon2	c.T614C	p.L205P	CAAGACTCATGGA	.	61.0	4.0	44.0	0.0	.	82	.	.	Atlas-SNP
GPRIN3	285513	hgsc.bcm.edu	hg19	4	90170576	90170576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPRIN3	NM_198281	exon2	c.A686G	p.D229G	TCAGAGTCACAGA	.	78.0	4.0	65.0	0.0	.	90	.	.	Atlas-SNP
PPP3CA	5530	hgsc.bcm.edu	hg19	4	101982264	101982264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPP3CA	NM_000944	exon10	c.C1136T	p.S379L	TCTTCTGACCCTA	.	405.0	86.0	424.0	0.0	.	51	.	.	Atlas-SNP
PPP3CA	5530	hgsc.bcm.edu	hg19	4	102030182	102030182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPP3CA	NM_000944	exon3	c.G313A	p.G105R	ATCCCCCGACTTC	.	86.0	4.0	76.0	0.0	.	51	.	.	Atlas-SNP
BANK1	55024	hgsc.bcm.edu	hg19	4	102783739	102783739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BANK1	NM_017935	exon4	c.G681T	p.E227D	TGTAGAGGTTGAA	.	187.0	73.0	144.0	0.0	.	95	.	.	Atlas-SNP
SYNPO2	171024	hgsc.bcm.edu	hg19	4	119947966	119947966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNPO2	NM_001128934	exon3	c.A442G	p.S148G	CAAAGAAGTGGTC	.	77.0	6.0	77.0	0.0	.	353	.	.	Atlas-SNP
HSPA4L	22824	hgsc.bcm.edu	hg19	4	128724944	128724944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HSPA4L	NM_014278	exon7	c.A824G	p.K275R	TAAAGAAGCTAAT	.	99.0	4.0	111.0	0.0	.	82	.	.	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	hg19	4	143029265	143029265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	INPP4B,NS,carcinoma,0,1	INPP4B	NM_003866	exon24	c.G2355A	p.M785I	CTTTTCCATAAAT	.	70.0	3.0	80.0	0.0	.	132	.	.	Atlas-SNP
SH3D19	152503	hgsc.bcm.edu	hg19	4	152095911	152095911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SH3D19	NM_001128924	exon1	c.A605G	p.D202G	TCGATGTCCACCA	.	125.0	5.0	96.0	0.0	.	54	.	.	Atlas-SNP
FHDC1	85462	hgsc.bcm.edu	hg19	4	153864458	153864458	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FHDC1	NM_033393	exon1	c.T249C	p.T83T	AACTACTCACATG	.	108.0	5.0	96.0	0.0	.	102	.	.	Atlas-SNP
C4orf46	201725	hgsc.bcm.edu	hg19	4	159592902	159592902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C4orf46	NM_001008393	exon1	c.T52C	p.S18P	GAGAAGAGGGAGG	.	125.0	9.0	174.0	0.0	.	11	.	.	Atlas-SNP
CEP44	80817	hgsc.bcm.edu	hg19	4	175225512	175225512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP44	NM_001040157	exon6	c.T499C	p.S167P	ATGACCTCAGGAA	.	166.0	12.0	146.0	0.0	.	35	.	.	Atlas-SNP
SNX25	83891	hgsc.bcm.edu	hg19	4	186185597	186185597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SNX25	NM_031953	exon4	c.A245G	p.E82G	GACATGAAGAACA	.	60.0	4.0	104.0	0.0	.	100	.	.	Atlas-SNP
SLC9A3	6550	hgsc.bcm.edu	hg19	5	477525	477525	+	Missense_Mutation	SNP	G	G	T	rs371187218		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC9A3	NM_004174	exon11	c.C1682A	p.S561Y	CTGGGGGAGCGGA	.	189.0	44.0	106.0	0.0	.	89	.	.	Atlas-SNP
ROPN1L	83853	hgsc.bcm.edu	hg19	5	10450066	10450066	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ROPN1L	NM_031916	exon3	c.T258C	p.C86C	ACAGTGTCACCAC	.	96.0	4.0	71.0	0.0	.	33	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16783454	16783454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO10	NM_012334	exon5	c.C592A	p.L198I	TTTCAAGAATAGC	.	105.0	20.0	54.0	0.0	.	198	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	37063996	37063996	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NIPBL	NM_015384	exon46	c.A7965G	p.G2655G	GCTTGGAGGAGGC	.	99.0	4.0	64.0	0.0	.	513	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52356813	52356813	+	Silent	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGA2	NM_002203	exon12	c.A1395T	p.I465I	CCAGATAGTGCTA	.	194.0	73.0	189.0	0.0	.	211	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54635841	54635841	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SKIV2L2	NM_015360	exon6	c.T519C	p.Y173Y	TAGGTATGCCATT	.	93.0	5.0	73.0	0.0	.	104	.	.	Atlas-SNP
IL31RA	133396	hgsc.bcm.edu	hg19	5	55206415	55206415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IL31RA	NM_001242637	exon12	c.G1557T	p.K519N	ACGAAAGACCTCT	.	267.0	105.0	233.0	0.0	.	84	.	.	Atlas-SNP
SETD9	133383	hgsc.bcm.edu	hg19	5	56205565	56205565	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_153706	exon1	c.C93T	p.N31N	CCACAACCCGAGG	.	132.0	52.0	131.0	0.0	.	.	.	.	Atlas-SNP
KIF2A	3796	hgsc.bcm.edu	hg19	5	61659121	61659121	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIF2A	NM_001098511	exon13	c.A1236G	p.K412K	ACTGAAACTCATT	.	92.0	6.0	45.0	0.0	.	69	.	.	Atlas-SNP
TNPO1	3842	hgsc.bcm.edu	hg19	5	72168546	72168546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNPO1	NM_002270	exon7	c.A677G	p.E226G	TTATTGAGGTAAG	.	133.0	6.0	117.0	0.0	.	90	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82835029	82835029	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VCAN	NM_004385	exon8	c.G6207A	p.T2069T	AGGTACGAAAGCT	.	91.0	36.0	66.0	0.0	.	498	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89954088	89954088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	GPR98,NS,NS,0,1	GPR98	NM_032119	exon21	c.T4745C	p.I1582T	CTTGTATACCAGA	.	189.0	73.0	165.0	0.0	.	605	.	.	Atlas-SNP
ERAP2	64167	hgsc.bcm.edu	hg19	5	96215717	96215717	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ERAP2	NM_001130140	exon2	c.T328C	p.L110L	ATCATCTTGCACA	.	100.0	4.0	125.0	0.0	.	77	.	.	Atlas-SNP
AP3S1	1176	hgsc.bcm.edu	hg19	5	115249174	115249174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP3S1	NM_001284	exon6	c.C569A	p.P190H	ACCTGCCCTCTTT	.	231.0	40.0	225.0	0.0	.	25	.	.	Atlas-SNP
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127484452	127484452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC12A2	NM_001046	exon12	c.T1888C	p.C630R	GCTCTATGTAAGG	.	97.0	4.0	66.0	0.0	.	119	.	.	Atlas-SNP
IRF1	3659	hgsc.bcm.edu	hg19	5	131825125	131825125	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IRF1	NM_002198	exon2	c.A46C	p.I16L	AATTAATCTGCAT	.	128.0	41.0	114.0	0.0	.	26	.	.	Atlas-SNP
ZCCHC10	54819	hgsc.bcm.edu	hg19	5	132334321	132334321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZCCHC10	NM_017665	exon4	c.A467G	p.D156G	CTGCTATCTGTGC	.	100.0	36.0	82.0	0.0	.	7	.	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	hg19	5	140181074	140181074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	PCDHA3_ENST00000522353,rectum,carcinoma,0,2	PCDHA3	NM_031497	exon1	c.C292T	p.R98W	TGCGGGCGGAGCG	.	71.0	3.0	59.0	0.0	.	396	.	.	Atlas-SNP
ARAP3	64411	hgsc.bcm.edu	hg19	5	141038204	141038204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARAP3	NM_022481	exon24	c.A3353G	p.D1118G	ATGAGGTCTCCAG	.	87.0	6.0	81.0	0.0	.	139	.	.	Atlas-SNP
FBXO38	81545	hgsc.bcm.edu	hg19	5	147807217	147807217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FBXO38	NM_030793	exon15	c.G2360A	p.R787K	AAAGGAGAACTAG	.	100.0	33.0	82.0	0.0	.	115	.	.	Atlas-SNP
ZNF300	91975	hgsc.bcm.edu	hg19	5	150275250	150275250	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF300	NM_001172831	exon7	c.A1599G	p.G533G	TTTTTCTCCTGTG	.	73.0	4.0	62.0	0.0	.	69	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150908876	150908876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAT2	NM_001447	exon14	c.A9889G	p.S3297G	AGGAGCTCTTCCG	.	122.0	44.0	106.0	0.0	.	465	.	.	Atlas-SNP
UBLCP1	134510	hgsc.bcm.edu	hg19	5	158705274	158705274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	UBLCP1	NM_145049	exon9	c.A713G	p.K238R	GGGGAAAGTTTTC	.	74.0	4.0	46.0	0.0	.	27	.	.	Atlas-SNP
SPDL1	54908	hgsc.bcm.edu	hg19	5	169031187	169031187	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_017785	exon12	c.A1794G	p.P598P	TACTCCAGAGACC	.	97.0	4.0	69.0	0.0	.	.	.	.	Atlas-SNP
RNF44	22838	hgsc.bcm.edu	hg19	5	175958000	175958000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RNF44	NM_014901	exon5	c.A488G	p.Q163R	AGCTGCTGCATGG	.	91.0	4.0	57.0	0.0	.	33	.	.	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	hg19	5	180036905	180036905	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FLT4	NM_182925	exon28	c.G3807T	p.V1269V	AAGTACCACAGAG	.	124.0	49.0	109.0	0.0	.	356	.	.	Atlas-SNP
MAS1L	116511	hgsc.bcm.edu	hg19	6	29454972	29454972	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MAS1L	NM_052967	exon1	c.A708G	p.S236S	CACAAGTGAAAGG	.	83.0	4.0	53.0	0.0	.	66	.	.	Atlas-SNP
HLA-E	3133	hgsc.bcm.edu	hg19	6	30458995	30458995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HLA-E	NM_005516	exon4	c.C692G	p.P231R	TCTACCCTGCGGA	.	166.0	58.0	130.0	0.0	.	35	.	.	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30679231	30679231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MDC1	NM_014641	exon7	c.C2179T	p.P727S	CTTGGGGTGGAGT	.	228.0	83.0	184.0	0.0	.	218	.	.	Atlas-SNP
PRRC2A	7916	hgsc.bcm.edu	hg19	6	31594920	31594920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PRRC2A	NM_004638	exon11	c.T1235A	p.L412Q	CTCCCCTACCCCC	.	86.0	4.0	78.0	0.0	.	152	.	.	Atlas-SNP
ABHD16A	7920	hgsc.bcm.edu	hg19	6	31669898	31669898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABHD16A	NM_021160	exon2	c.T142C	p.Y48H	GCTGATAGTACGT	.	93.0	4.0	77.0	0.0	.	34	.	.	Atlas-SNP
COL11A2	1302	hgsc.bcm.edu	hg19	6	33137627	33137627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	COL11A2,NS,carcinoma,0,1	COL11A2	NM_080680	exon50	c.A3671G	p.Q1224R	TCGCCCTGGATCC	.	86.0	8.0	67.0	1.0	.	124	.	.	Atlas-SNP
SYNGAP1	8831	hgsc.bcm.edu	hg19	6	33405455	33405455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNGAP1	NM_006772	exon8	c.G773A	p.R258H	ACAGCCGCCGGGT	.	64.0	24.0	59.0	0.0	.	202	.	.	Atlas-SNP
IP6K3	117283	hgsc.bcm.edu	hg19	6	33696059	33696059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IP6K3	NM_001142883	exon4	c.T218C	p.L73P	TTCCAGAGGTGCA	.	113.0	6.0	89.0	0.0	.	52	.	.	Atlas-SNP
TEAD3	7005	hgsc.bcm.edu	hg19	6	35443341	35443341	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TEAD3	NM_003214	exon12	c.1041+2T>C	.	CCACTCACCTCCA	.	131.0	6.0	95.0	0.0	.	52	.	.	Atlas-SNP
GPR111	222611	hgsc.bcm.edu	hg19	6	47649351	47649351	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPR111	NM_153839	exon7	c.A852G	p.E284E	TTTGGAAGCCAGT	.	96.0	4.0	71.0	0.0	.	123	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56443682	56443682	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DST	NM_015548	exon31	c.A5088G	p.K1696K	AGCCGTTTTCTTC	.	118.0	5.0	85.0	0.0	.	1427	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75806978	75806978	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL12A1	NM_004370	exon59	c.A8568G	p.P2856P	CGGCCCTGGTGGG	.	72.0	4.0	110.0	0.0	.	385	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75864133	75864133	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL12A1	NM_004370	exon17	c.T3564C	p.S1188S	CTTACCAGAAGAT	.	95.0	4.0	87.0	0.0	.	385	.	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	hg19	6	76405605	76405605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SENP6	NM_015571	exon17	c.A2161G	p.R721G	AATCAGAGAGAGA	.	97.0	4.0	154.0	0.0	.	189	.	.	Atlas-SNP
CGA	1081	hgsc.bcm.edu	hg19	6	87795550	87795550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	CGA,colon,carcinoma,0,1	CGA	NM_001252383	exon5	c.T368C	p.V123A	ACTGTGACCTAAA	.	64.0	3.0	89.0	2.0	.	22	.	.	Atlas-SNP
ANKRD6	22881	hgsc.bcm.edu	hg19	6	90340295	90340295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ANKRD6	NM_001242809	exon16	c.T1756C	p.S586P	ACAGGCTCCCGAC	.	99.0	5.0	130.0	0.0	.	51	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90411385	90411385	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MDN1	NM_014611	exon55	c.A8319G	p.E2773E	CTGAACTTCTTTG	.	46.0	4.0	59.0	0.0	.	478	.	.	Atlas-SNP
BACH2	60468	hgsc.bcm.edu	hg19	6	90661367	90661367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BACH2	NM_001170794	exon5	c.A458G	p.H153R	TCCTCGTGTGGGC	.	46.0	4.0	79.0	0.0	.	224	.	.	Atlas-SNP
PNISR	25957	hgsc.bcm.edu	hg19	6	99862518	99862518	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PNISR	NM_015491	exon2	c.A18G	p.G6G	AGGCTGTCCTCCT	.	76.0	4.0	106.0	0.0	.	74	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106967048	106967048	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	AIM1,NS,carcinoma,0,1	AIM1	NM_001624	exon2	c.T741C	p.P247P	AACCCCTAAGAAT	.	36.0	3.0	51.0	0.0	.	161	.	.	Atlas-SNP
BET3L	100128327	hgsc.bcm.edu	hg19	6	116866643	116866643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BET3L	NM_001139444	exon1	c.A35G	p.H12R	ATTTTATGGTATT	.	98.0	4.0	188.0	0.0	.	18	.	.	Atlas-SNP
HEY2	23493	hgsc.bcm.edu	hg19	6	126080600	126080600	+	Silent	SNP	C	C	T	rs376521140		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	HEY2,NS,carcinoma,0,1	HEY2	NM_012259	exon5	c.C666T	p.H222H	TGCCCACGGCTCT	.	48.0	32.0	80.0	0.0	.	44	.	.	Atlas-SNP
PPIL4	85313	hgsc.bcm.edu	hg19	6	149867088	149867088	+	Silent	SNP	G	G	A	rs200555722	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPIL4	NM_139126	exon1	c.C54T	p.T18T	TTCTTCGGTGTAC	.	49.0	4.0	86.0	0.0	.	36	.	G|0.997;C|0.003	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151121959	151121959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLEKHG1	NM_001029884	exon7	c.T734C	p.L245P	CCTATCTCTTGAA	.	93.0	4.0	105.0	0.0	.	97	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152623096	152623096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNE1	NM_182961	exon92	c.A17449G	p.T5817A	TCACCGTCAGCAG	.	88.0	4.0	105.0	0.0	.	3227	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152647436	152647436	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	SYNE1_ENST00000423061,NS,carcinoma,0,3	SYNE1	NM_182961	exon79	c.G15288A	p.L5096L	CCTCTGCAAGAGA	.	45.0	2.0	63.0	0.0	.	3227	.	.	Atlas-SNP
TMEM181	57583	hgsc.bcm.edu	hg19	6	159005001	159005001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM181	NM_020823	exon4	c.A595G	p.I199V	ATTCAAATACTTT	.	48.0	4.0	65.0	0.0	.	47	.	.	Atlas-SNP
PMS2	5395	hgsc.bcm.edu	hg19	7	6026652	6026652	+	Missense_Mutation	SNP	C	C	G	rs63750739	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PMS2	NM_000535	exon11	c.G1744C	p.E582Q	TTTCTTCTTTTTT	.	86.0	41.0	77.0	0.0	.	88	.	.	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	hg19	7	20438493	20438493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGB8	NM_002214	exon9	c.C1157A	p.S386X	TCATTTCAGAAGT	.	159.0	60.0	127.0	0.0	.	159	.	.	Atlas-SNP
HOXA11	3207	hgsc.bcm.edu	hg19	7	27224736	27224736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HOXA11	NM_005523	exon1	c.T28C	p.S10P	TAGAGGAGCAGGG	.	95.0	4.0	45.0	0.0	.	29	.	.	Atlas-SNP
EVX1	2128	hgsc.bcm.edu	hg19	7	27285511	27285511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EVX1	NM_001989	exon3	c.T691C	p.F231L	GTGTGGTTCCAGA	.	100.0	4.0	113.0	0.0	.	23	.	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44555505	44555505	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NPC1L1	NM_013389	exon19	c.G3774A	p.K1258K	CTGGGCCTTGGCG	.	93.0	38.0	68.0	0.0	.	141	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48312769	48312769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABCA13	NM_152701	exon17	c.T3506C	p.M1169T	TTGACATGAATGT	.	97.0	4.0	70.0	0.0	.	1192	.	.	Atlas-SNP
MLXIPL	51085	hgsc.bcm.edu	hg19	7	73010987	73010987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLXIPL	NM_032954	exon11	c.T1804C	p.S602P	GGGGTGAGAGCCG	.	129.0	6.0	85.0	0.0	.	54	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83590840	83590840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	SEMA3A,pharynx,carcinoma,0,1	SEMA3A	NM_006080	exon17	c.C2163A	p.F721L	TTCACAGAACTCA	.	549.0	109.0	238.0	0.0	.	121	.	.	Atlas-SNP
LMTK2	22853	hgsc.bcm.edu	hg19	7	97821985	97821985	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	LMTK2_ENST00000297293,NS,carcinoma,0,2	LMTK2	NM_014916	exon11	c.G2208A	p.L736L	CTCATTGTCCAGC	.	40.0	3.0	30.0	0.0	.	228	.	.	Atlas-SNP
PILRB	29990	hgsc.bcm.edu	hg19	7	99957138	99957138	+	Silent	SNP	C	C	G	rs369458364	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PILRB	NM_178238	exon3	c.C633G	p.L211L	CCTCCTCCTGTGG	.	126.0	16.0	84.0	0.0	.	26	.	.	Atlas-SNP
PILRB	29990	hgsc.bcm.edu	hg19	7	99957139	99957139	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PILRB	NM_178238	exon3	c.C634T	p.L212L	CTCCTCCTGTGGT	.	120.0	9.0	84.0	0.0	.	26	.	.	Atlas-SNP
IFRD1	3475	hgsc.bcm.edu	hg19	7	112095823	112095823	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	IFRD1,NS,carcinoma,0,1	IFRD1	NM_001007245	exon3	c.C100T	p.Q34X	GGTGGCCAGCATC	.	39.0	2.0	37.0	0.0	.	46	.	.	Atlas-SNP
GRM8	2918	hgsc.bcm.edu	hg19	7	126079220	126079220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GRM8	NM_000845	exon10	c.T2680C	p.S894P	TAGAGGAAGCTGT	.	63.0	4.0	50.0	0.0	.	377	.	.	Atlas-SNP
PAX4	5078	hgsc.bcm.edu	hg19	7	127252032	127252032	+	Silent	SNP	T	T	C	rs370406503		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PAX4	NM_006193	exon7	c.A714G	p.V238V	CCTTGGTACAGTC	.	75.0	4.0	59.0	0.0	.	66	.	.	Atlas-SNP
WEE2	494551	hgsc.bcm.edu	hg19	7	141420771	141420771	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	WEE2	NM_001105558	exon5	c.G795A	p.V265V	CGCAGTGCTTGGG	.	96.0	4.0	75.0	0.0	.	59	.	.	Atlas-SNP
SSBP1	6742	hgsc.bcm.edu	hg19	7	141441987	141441987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SSBP1	NM_001256513	exon3	c.A43G	p.R15G	TTTGTAAGACATG	.	61.0	4.0	41.0	0.0	.	17	.	.	Atlas-SNP
GIMAP8	155038	hgsc.bcm.edu	hg19	7	150171348	150171348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GIMAP8	NM_175571	exon4	c.A931G	p.N311D	TTAAAGAACATTG	.	126.0	31.0	63.0	0.0	.	136	.	.	Atlas-SNP
PAXIP1	22976	hgsc.bcm.edu	hg19	7	154759592	154759592	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	PAXIP1_ENST00000397192,colon,carcinoma,0,2	PAXIP1	NM_007349	exon8	c.T1827C	p.C609C	AAACACACATCCC	.	75.0	4.0	71.0	1.0	.	150	.	.	Atlas-SNP
INSIG1	3638	hgsc.bcm.edu	hg19	7	155090257	155090257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	INSIG1	NM_198337	exon2	c.A262G	p.S88G	CAGAGGAGCCTCG	.	77.0	4.0	59.0	0.0	.	20	.	.	Atlas-SNP
MTMR9	66036	hgsc.bcm.edu	hg19	8	11174246	11174246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MTMR9	NM_015458	exon8	c.A1178G	p.E393G	AGTGGGAGGCTCC	.	139.0	6.0	191.0	0.0	.	58	.	.	Atlas-SNP
VPS37A	137492	hgsc.bcm.edu	hg19	8	17132309	17132309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VPS37A	NM_152415	exon5	c.C484A	p.P162T	CCATATCCTCCAC	.	117.0	65.0	174.0	0.0	.	22	.	.	Atlas-SNP
ATP6V1B2	526	hgsc.bcm.edu	hg19	8	20074766	20074766	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP6V1B2	NM_001693	exon12	c.A1197G	p.S399S	ACTATCACGGTTA	.	95.0	4.0	80.0	0.0	.	34	.	.	Atlas-SNP
POLR3D	661	hgsc.bcm.edu	hg19	8	22106822	22106822	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	POLR3D	NM_001722	exon7	c.A921G	p.R307R	AGACCGAGTACGC	.	84.0	5.0	90.0	0.0	.	26	.	.	Atlas-SNP
EXTL3	2137	hgsc.bcm.edu	hg19	8	28575571	28575571	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EXTL3	NM_001440	exon3	c.G1995T	p.V665V	CACGGTGGTGATG	.	165.0	94.0	222.0	1.0	.	83	.	.	Atlas-SNP
FGFR1	2260	hgsc.bcm.edu	hg19	8	38285912	38285912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FGFR1	NM_001174067	exon5	c.T499C	p.S167P	AAGAGGAGTCATC	.	84.0	4.0	123.0	0.0	.	284	.	.	Atlas-SNP
IDO2	169355	hgsc.bcm.edu	hg19	8	39840206	39840206	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IDO2	NM_194294	exon5	c.A390G	p.E130E	TGTCGAAGTCTCC	.	70.0	5.0	85.0	0.0	.	78	.	.	Atlas-SNP
AP3M2	10947	hgsc.bcm.edu	hg19	8	42022975	42022975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP3M2	NM_001134296	exon7	c.C700T	p.H234Y	AGCTTCCATCCTT	.	329.0	140.0	245.0	0.0	.	41	.	.	Atlas-SNP
FNTA	2339	hgsc.bcm.edu	hg19	8	42939883	42939883	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FNTA	NM_002027	exon8	c.T876C	p.Y292Y	CAAATATCCTAAT	.	104.0	6.0	89.0	0.0	.	34	.	.	Atlas-SNP
PCMTD1	115294	hgsc.bcm.edu	hg19	8	52746162	52746162	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PCMTD1	NM_052937	exon4	c.A498G	p.G166G	TCCAGCTCCACAA	.	74.0	4.0	84.0	0.0	.	73	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55537397	55537397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RP1	NM_006269	exon4	c.A955G	p.I319V	GATGATATTGAGA	.	94.0	4.0	79.0	0.0	.	429	.	.	Atlas-SNP
CHD7	55636	hgsc.bcm.edu	hg19	8	61707642	61707642	+	Missense_Mutation	SNP	C	C	T	rs200277422	bycluster;alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHD7	NM_017780	exon4	c.C2194T	p.P732S	ACACCCCCACCAT	.	79.0	4.0	57.0	0.0	.	534	.	C|0.998;G|0.002	Atlas-SNP
SULF1	23213	hgsc.bcm.edu	hg19	8	70541861	70541861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SULF1	NM_001128205	exon19	c.T2231C	p.L744P	CTGGCCTCACTTG	.	120.0	6.0	109.0	0.0	.	153	.	.	Atlas-SNP
SLCO5A1	81796	hgsc.bcm.edu	hg19	8	70744610	70744610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLCO5A1	NM_030958	exon2	c.A299G	p.D100G	CTGAGGTCCACCC	.	138.0	18.0	117.0	0.0	.	142	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77616371	77616371	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	ZFHX4,NS,carcinoma,0,1	ZFHX4	NM_024721	exon2	c.G48A	p.Q16Q	TGGGCAGAGCACA	.	144.0	63.0	126.0	0.0	.	878	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77768488	77768488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFHX4	NM_024721	exon10	c.G9331A	p.G3111R	CTCCCCGGAATGA	.	69.0	5.0	66.0	0.0	.	878	.	.	Atlas-SNP
TMEM67	91147	hgsc.bcm.edu	hg19	8	94822029	94822029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM67	NM_153704	exon26	c.A2678G	p.D893G	AAATGGATTACTT	.	92.0	4.0	90.0	0.0	.	187	.	.	Atlas-SNP
NCALD	83988	hgsc.bcm.edu	hg19	8	102731720	102731720	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NCALD	NM_001040627	exon4	c.A138G	p.E46E	AAACTCTTCCATT	.	121.0	5.0	120.0	0.0	.	16	.	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	hg19	8	104898200	104898200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RIMS2	NM_001100117	exon4	c.A1373G	p.H458R	AACAGCACCACTT	.	109.0	5.0	79.0	0.0	.	1357	.	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	hg19	8	105257145	105257145	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	RIMS2_ENST00000507740,NS,carcinoma,0,4	RIMS2	NM_001100117	exon20	c.A3336G	p.K1112K	TGCAGAAGCAGGA	.	66.0	3.0	69.0	1.0	.	1357	.	.	Atlas-SNP
SAMD12	401474	hgsc.bcm.edu	hg19	8	119452108	119452108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SAMD12	NM_207506	exon3	c.G285C	p.Q95H	GTAGATCTGATAC	.	176.0	70.0	172.0	0.0	.	24	.	.	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	hg19	8	123964092	123964092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZHX2	NM_014943	exon3	c.A342T	p.E114D	TGCAGAATGTAAC	.	75.0	21.0	43.0	0.0	.	106	.	.	Atlas-SNP
TONSL	4796	hgsc.bcm.edu	hg19	8	145659589	145659589	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TONSL	NM_013432	exon21	c.C3159T	p.A1053A	GTCCAGGGCCAGG	.	100.0	9.0	123.0	0.0	.	128	.	.	Atlas-SNP
GLDC	2731	hgsc.bcm.edu	hg19	9	6554742	6554742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GLDC	NM_000170	exon19	c.T2242C	p.S748P	GGTGCGAGACATC	.	74.0	5.0	52.0	0.0	.	118	.	.	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	hg19	9	15695299	15695299	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_173550	exon11	c.T1282C	p.L428L	TCGATCTTGGACA	.	95.0	4.0	96.0	0.0	.	.	.	.	Atlas-SNP
PLIN2	123	hgsc.bcm.edu	hg19	9	19116605	19116605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLIN2	NM_001122	exon8	c.C955G	p.Q319E	GCTGCTGAGTCAG	.	217.0	97.0	200.0	0.0	.	41	.	.	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	hg19	9	20414041	20414041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLLT3	NM_004529	exon5	c.A803G	p.N268S	AGTAAGTTACTAT	.	451.0	179.0	439.0	1.0	.	125	.	.	Atlas-SNP
IFNA6	3443	hgsc.bcm.edu	hg19	9	21350645	21350645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IFNA6	NM_021002	exon1	c.A242C	p.H81P	ACCTCATGGAGGA	.	239.0	110.0	193.0	0.0	.	27	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79324155	79324155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PRUNE2	NM_015225	exon8	c.C3035A	p.P1012H	GACTGAGGAGGAA	.	176.0	9.0	151.0	0.0	.	331	.	.	Atlas-SNP
TXN	7295	hgsc.bcm.edu	hg19	9	113018699	113018699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TXN	NM_001244938	exon1	c.A17G	p.E6G	TTGCTCTCGATCT	.	65.0	6.0	52.0	0.0	.	6	.	.	Atlas-SNP
HSDL2	84263	hgsc.bcm.edu	hg19	9	115232768	115232768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HSDL2	NM_032303	exon11	c.A1201G	p.M401V	GGTAACATGGCCC	.	42.0	4.0	54.0	0.0	.	24	.	.	Atlas-SNP
COL27A1	85301	hgsc.bcm.edu	hg19	9	117015214	117015214	+	Splice_Site	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL27A1	NM_032888	exon27	c.3141+2T>A	.	CCCAGGTAAGCAA	.	166.0	58.0	128.0	0.0	.	200	.	.	Atlas-SNP
OR5C1	392391	hgsc.bcm.edu	hg19	9	125551531	125551531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR5C1	NM_001001923	exon1	c.T320C	p.V107A	TGTTTGTCTTTGC	.	101.0	5.0	86.0	0.0	.	45	.	.	Atlas-SNP
CRB2	286204	hgsc.bcm.edu	hg19	9	126139301	126139301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CRB2	NM_173689	exon13	c.A3818G	p.D1273G	AGATGGACAGTGT	.	137.0	6.0	142.0	0.0	.	86	.	.	Atlas-SNP
FPGS	2356	hgsc.bcm.edu	hg19	9	130573285	130573285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FPGS	NM_004957	exon14	c.A1349G	p.N450S	CAGGCAACGCAGG	.	62.0	4.0	46.0	0.0	.	30	.	.	Atlas-SNP
SETX	23064	hgsc.bcm.edu	hg19	9	135202230	135202230	+	Silent	SNP	A	A	G	rs151237267	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SETX	NM_015046	exon10	c.T4755C	p.P1585P	AGGAGGAGGCAAG	.	127.0	6.0	127.0	0.0	.	234	.	A|0.995;C|0.005	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135798881	135798881	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TSC1	NM_001162427	exon6	c.211-2A>G	.	TCCATCTGCAGGA	.	127.0	7.0	119.0	0.0	.	167	.	.	Atlas-SNP
C9orf173	441476	hgsc.bcm.edu	hg19	9	140147365	140147365	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C9orf173	NM_001004353	exon5	c.G744A	p.S248S	CCGCTCGCCGGCC	.	70.0	36.0	63.0	0.0	.	19	.	.	Atlas-SNP
C10orf113	387638	hgsc.bcm.edu	hg19	10	21435343	21435343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C10orf113	NM_001177483	exon1	c.G95T	p.S32I	CAAACACTCTCTC	.	101.0	5.0	64.0	0.0	.	32	.	.	Atlas-SNP
C10orf113	387638	hgsc.bcm.edu	hg19	10	21435344	21435344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C10orf113	NM_001177483	exon1	c.A94T	p.S32C	AAACACTCTCTCT	.	103.0	6.0	65.0	0.0	.	32	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26443748	26443748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO3A	NM_017433	exon25	c.T2789C	p.F930S	CATATTTTAGAGT	.	90.0	4.0	68.0	0.0	.	371	.	.	Atlas-SNP
DDX50	79009	hgsc.bcm.edu	hg19	10	70694063	70694063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DDX50	NM_024045	exon9	c.C1348T	p.R450C	GCTGCCCGTGGTT	.	66.0	24.0	52.0	0.0	.	65	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76741556	76741556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_012330	exon11	c.T2243C	p.L748P	CAAAGCTTTACCT	.	76.0	4.0	52.0	0.0	.	.	.	.	Atlas-SNP
DUPD1	338599	hgsc.bcm.edu	hg19	10	76818256	76818256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DUPD1	NM_001003892	exon1	c.T17A	p.V6E	GTCTTCACTTCTC	.	79.0	23.0	53.0	0.0	.	30	.	.	Atlas-SNP
DUSP13	51207	hgsc.bcm.edu	hg19	10	76868819	76868819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DUSP13	NM_001007272	exon1	c.T97C	p.S33P	AAGAAGACTTCCC	.	84.0	4.0	64.0	0.0	.	82	.	.	Atlas-SNP
FAS	355	hgsc.bcm.edu	hg19	10	90762898	90762898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAS	NM_152872	exon2	c.A143G	p.N48S	CTCAGAACTTGGA	.	72.0	4.0	109.0	0.0	.	47	.	.	Atlas-SNP
TBC1D12	23232	hgsc.bcm.edu	hg19	10	96260080	96260080	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TBC1D12	NM_015188	exon6	c.T1515C	p.T505T	TATCACTCCTGGT	.	70.0	4.0	120.0	0.0	.	51	.	.	Atlas-SNP
HPSE2	60495	hgsc.bcm.edu	hg19	10	100904083	100904083	+	Silent	SNP	C	C	T	rs200038077		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HPSE2	NM_001166246	exon3	c.G522A	p.L174L	GAGCTCCAGCATA	.	62.0	4.0	69.0	0.0	.	203	.	C|0.999;T|0.001	Atlas-SNP
CHUK	1147	hgsc.bcm.edu	hg19	10	101978562	101978562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	CHUK,caecum,carcinoma,0,5	CHUK	NM_001278	exon8	c.A710G	p.K237R	GGATCCTTCTTCT	.	79.0	4.0	118.0	0.0	.	71	.	.	Atlas-SNP
BTRC	8945	hgsc.bcm.edu	hg19	10	103190119	103190119	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BTRC	NM_001256856	exon2	c.T66C	p.S22S	CAGGTCTCTGTGG	.	82.0	4.0	146.0	0.0	.	64	.	.	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	hg19	10	103908392	103908392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPRC1	NM_015062	exon11	c.T4558C	p.S1520P	TACAGCTCTTATC	.	97.0	4.0	130.0	0.0	.	151	.	.	Atlas-SNP
TAF5	6877	hgsc.bcm.edu	hg19	10	105139430	105139430	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAF5	NM_006951	exon4	c.A1179G	p.G393G	AGAGGGAGAAAAT	.	89.0	4.0	134.0	0.0	.	47	.	.	Atlas-SNP
COL17A1	1308	hgsc.bcm.edu	hg19	10	105830329	105830329	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL17A1	NM_000494	exon10	c.464-2A>G	.	TGTCCCTGTGAAA	.	43.0	4.0	58.0	0.0	.	149	.	.	Atlas-SNP
SMC3	9126	hgsc.bcm.edu	hg19	10	112356255	112356255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SMC3	NM_005445	exon19	c.A2063G	p.E688G	AAGAAGAACTAGG	.	61.0	4.0	61.0	0.0	.	103	.	.	Atlas-SNP
VWA2	340706	hgsc.bcm.edu	hg19	10	116044664	116044664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VWA2	NM_001272046	exon10	c.T932C	p.V311A	CATGTGTTCCAGA	.	65.0	4.0	75.0	0.0	.	64	.	.	Atlas-SNP
SEC23IP	11196	hgsc.bcm.edu	hg19	10	121677482	121677482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SEC23IP	NM_007190	exon9	c.A1679G	p.N560S	AGATAAACCATCT	.	93.0	5.0	101.0	0.0	.	100	.	.	Atlas-SNP
PIDD	55367	hgsc.bcm.edu	hg19	11	802841	802841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PIDD	NM_145887	exon4	c.T760C	p.S254P	GCACAGAGGCCAG	.	147.0	6.0	127.0	0.0	.	76	.	.	Atlas-SNP
IFITM10	402778	hgsc.bcm.edu	hg19	11	1756545	1756545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001170820	exon3	c.T652C	p.F218L	AGATGAAGACGAG	.	82.0	5.0	63.0	0.0	.	.	.	.	Atlas-SNP
OR51G1	79324	hgsc.bcm.edu	hg19	11	4944635	4944635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR51G1	NM_001005237	exon1	c.T935C	p.I312T	GACTTTATAAACT	.	117.0	16.0	113.0	0.0	.	74	.	.	Atlas-SNP
AMPD3	272	hgsc.bcm.edu	hg19	11	10500172	10500172	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AMPD3	NM_000480	exon3	c.T348C	p.S116S	CATGTCTCCCACA	.	114.0	5.0	89.0	0.0	.	68	.	.	Atlas-SNP
EIF4G2	1982	hgsc.bcm.edu	hg19	11	10824623	10824623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EIF4G2	NM_001172705	exon11	c.A950G	p.D317G	CCATTGTCAAGAA	.	125.0	5.0	99.0	0.0	.	89	.	.	Atlas-SNP
SERGEF	26297	hgsc.bcm.edu	hg19	11	18026056	18026056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SERGEF	NM_012139	exon4	c.T379C	p.S127P	AGTTGGATCCACA	.	62.0	4.0	48.0	0.0	.	38	.	.	Atlas-SNP
FBXO3	26273	hgsc.bcm.edu	hg19	11	33770421	33770421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FBXO3	NM_012175	exon9	c.A950G	p.D317G	AGTGCATCTTTTG	.	88.0	4.0	72.0	0.0	.	37	.	.	Atlas-SNP
AMBRA1	55626	hgsc.bcm.edu	hg19	11	46431903	46431903	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AMBRA1	NM_001267782	exon18	c.T3141C	p.G1047G	CTCAACACCAGAG	.	96.0	4.0	79.0	0.0	.	201	.	.	Atlas-SNP
SPI1	6688	hgsc.bcm.edu	hg19	11	47380554	47380554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPI1	NM_001080547	exon4	c.T337C	p.S113P	GGTAGGAGACCTG	.	306.0	13.0	225.0	0.0	.	21	.	.	Atlas-SNP
OR4S2	219431	hgsc.bcm.edu	hg19	11	55418935	55418935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR4S2	NM_001004059	exon1	c.G556T	p.A186S	AAACTTGCCTGCA	.	301.0	114.0	235.0	0.0	.	89	.	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	hg19	11	56344846	56344846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.,1	OR5M10	NM_001004741	exon1	c.A352T	p.M118L	ATGCCATTGAAGC	.	115.0	13.0	80.0	0.0	.	56	.	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	hg19	11	56344847	56344847	+	Silent	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR5M10	NM_001004741	exon1	c.A351C	p.S117S	TGCCATTGAAGCA	.	114.0	12.0	80.0	0.0	.	56	.	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	hg19	11	56344851	56344851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR5M10	NM_001004741	exon1	c.C347G	p.A116G	ATTGAAGCAAGGA	.	120.0	5.0	81.0	0.0	.	56	.	.	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57076580	57076580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNKS1BP1	NM_033396	exon6	c.A3605G	p.D1202G	TTCATGTCTCTCA	.	125.0	5.0	116.0	0.0	.	148	.	.	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	hg19	11	58979671	58979671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MPEG1	NM_001039396	exon1	c.C668T	p.A223V	AAGGAGGCCCTGA	.	49.0	21.0	44.0	0.0	.	72	.	.	Atlas-SNP
FADS3	3995	hgsc.bcm.edu	hg19	11	61641336	61641336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FADS3	NM_021727	exon12	c.T1288C	p.S430P	TCAGGGACCTGGG	.	242.0	10.0	132.0	0.0	.	29	.	.	Atlas-SNP
SLC22A11	55867	hgsc.bcm.edu	hg19	11	64326710	64326710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC22A11	NM_018484	exon2	c.G497A	p.R166Q	CCTACCGGTGAGT	.	98.0	39.0	67.0	0.0	.	54	.	.	Atlas-SNP
LTBP3	4054	hgsc.bcm.edu	hg19	11	65315205	65315205	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	LTBP3,colon,carcinoma,0,1	LTBP3	NM_001130144	exon13	c.G1934C	p.R645P	TAGCCGCGGTTGC	.	40.0	5.0	34.0	0.0	.	55	.	.	Atlas-SNP
AP5B1	91056	hgsc.bcm.edu	hg19	11	65547419	65547419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP5B1	NM_138368	exon2	c.T545C	p.V182A	GGCTGGACAGGGC	.	100.0	6.0	115.0	0.0	.	40	.	.	Atlas-SNP
ANKRD13D	338692	hgsc.bcm.edu	hg19	11	67067337	67067337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ANKRD13D	NM_207354	exon9	c.A920G	p.Q307R	TGGCGCAGCAGCA	.	100.0	4.0	108.0	0.0	.	71	.	.	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73076917	73076917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGEF17	NM_014786	exon20	c.C5920A	p.R1974S	CACGTCCGCTTCT	.	90.0	28.0	72.0	0.0	.	117	.	.	Atlas-SNP
FAM168A	23201	hgsc.bcm.edu	hg19	11	73179515	73179515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAM168A	NM_015159	exon2	c.A5G	p.N2S	ACAGGGTTCATTG	.	74.0	4.0	69.0	0.0	.	18	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76858854	76858854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO7A	NM_001127179	exon4	c.T143C	p.I48T	ACTGGATCTCTCC	.	147.0	7.0	95.0	0.0	.	164	.	.	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	hg19	11	115049371	115049371	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CADM1	NM_014333	exon9	c.A1203G	p.R401R	TTTATGTCTGGCA	.	54.0	4.0	45.0	0.0	.	74	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117222640	117222640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP164	NM_001271933	exon4	c.A329C	p.K110T	CCATTAAGAAGAA	.	87.0	6.0	57.0	0.0	.	121	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118368716	118368716	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLL	NM_001197104	exon21	c.A5730G	p.S1910S	GTGGTCAGCGGAA	.	95.0	4.0	93.0	0.0	.	548	.	.	Atlas-SNP
CXCR5	643	hgsc.bcm.edu	hg19	11	118764607	118764607	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CXCR5	NM_001716	exon2	c.G354A	p.G118G	CCTGGGGACCTTC	.	177.0	42.0	173.0	0.0	.	34	.	.	Atlas-SNP
BCL9L	283149	hgsc.bcm.edu	hg19	11	118769314	118769314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BCL9L	NM_182557	exon8	c.A4310G	p.K1437R	CGCTGCTTCATCA	.	113.0	5.0	159.0	0.0	.	254	.	.	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119030961	119030961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABCG4	NM_022169	exon13	c.A1462G	p.S488G	TACTGCAGCATTG	.	141.0	6.0	108.0	0.0	.	77	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121420770	121420770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SORL1	NM_003105	exon15	c.T2153C	p.V718A	GCCCTGTGGGTTC	.	92.0	5.0	54.0	0.0	.	218	.	.	Atlas-SNP
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128932247	128932247	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGAP32	NM_001142685	exon9	c.A849G	p.G283G	AATGTCTCCCACC	.	47.0	4.0	43.0	0.0	.	307	.	.	Atlas-SNP
SLC6A13	6540	hgsc.bcm.edu	hg19	12	333670	333670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC6A13	NM_016615	exon10	c.T1070C	p.L357P	AAAGCCAGGCCAG	.	176.0	63.0	152.0	0.0	.	62	.	.	Atlas-SNP
CD163L1	283316	hgsc.bcm.edu	hg19	12	7510070	7510070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD163L1	NM_174941	exon19	c.A4292T	p.N1431I	CCATGGTTGGGGG	.	74.0	24.0	52.0	0.0	.	238	.	.	Atlas-SNP
PLCZ1	89869	hgsc.bcm.edu	hg19	12	18841123	18841123	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	PLCZ1,lower_third,carcinoma,0,1	PLCZ1	NM_033123	exon13	c.T1491C	p.T497T	TGAATGAGTAAGA	.	44.0	2.0	29.0	0.0	.	107	.	.	Atlas-SNP
PLEKHA5	54477	hgsc.bcm.edu	hg19	12	19436349	19436349	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLEKHA5	NM_001256470	exon12	c.T1449C	p.P483P	AACCCCTTCCACT	.	92.0	5.0	85.0	0.0	.	198	.	.	Atlas-SNP
ARNTL2	56938	hgsc.bcm.edu	hg19	12	27573461	27573461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARNTL2	NM_020183	exon17	c.T1907C	p.L636P	GGACCCTCTAGCC	.	67.0	5.0	74.0	0.0	.	54	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	hg19	12	32136525	32136525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_018169	exon4	c.C2636T	p.S879L	AGGAGTCAAGGAA	.	170.0	47.0	137.0	0.0	.	.	.	.	Atlas-SNP
SLC38A1	81539	hgsc.bcm.edu	hg19	12	46598344	46598344	+	Silent	SNP	A	A	G	rs148843987		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	SLC38A1,hand,malignant_melanoma,0,1	SLC38A1	NM_030674	exon10	c.T676C	p.L226L	AGCTCAAGGAAAA	.	58.0	3.0	53.0	0.0	.	58	.	.	Atlas-SNP
DDN	23109	hgsc.bcm.edu	hg19	12	49391026	49391026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DDN	NM_015086	exon2	c.A1633G	p.T545A	GGAAAGTGCGCTC	.	49.0	4.0	68.0	0.0	.	54	.	.	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	hg19	12	50189186	50189186	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NCKAP5L	NM_001037806	exon8	c.T2457C	p.P819P	CTTGGAAGGGAGC	.	65.0	5.0	43.0	0.0	.	142	.	.	Atlas-SNP
CSRNP2	81566	hgsc.bcm.edu	hg19	12	51457625	51457625	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CSRNP2	NM_030809	exon5	c.G1536T	p.T512T	ATTGTCCGTGCGG	.	152.0	71.0	154.0	0.0	.	47	.	.	Atlas-SNP
CSRNP2	81566	hgsc.bcm.edu	hg19	12	51457641	51457641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CSRNP2	NM_030809	exon5	c.G1520T	p.S507I	GGGAGGCTTGAGG	.	169.0	76.0	166.0	0.0	.	47	.	.	Atlas-SNP
CELA1	1990	hgsc.bcm.edu	hg19	12	51723604	51723604	+	Missense_Mutation	SNP	C	C	G	rs201129231	bycluster	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CELA1	NM_001971	exon7	c.G623C	p.G208A	AGGGGGCCCCCAG	.	35.0	4.0	46.0	0.0	.	39	.	C|0.999;G|0.001	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56995380	56995380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BAZ2A	NM_013449	exon20	c.T4027C	p.S1343P	CCTCAGAAACTGC	.	88.0	5.0	67.0	0.0	.	263	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57569808	57569808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRP1	NM_002332	exon24	c.T3910C	p.F1304L	CTGGACTTCCACC	.	117.0	7.0	106.0	0.0	.	428	.	.	Atlas-SNP
KIF5A	3798	hgsc.bcm.edu	hg19	12	57966045	57966045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIF5A	NM_004984	exon14	c.A1564G	p.K522E	TCTCAGAAGGTGG	.	93.0	4.0	93.0	0.0	.	143	.	.	Atlas-SNP
TBK1	29110	hgsc.bcm.edu	hg19	12	64889483	64889483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TBK1	NM_013254	exon15	c.G1648C	p.E550Q	AGTGTAGAAAAAC	.	109.0	50.0	58.0	0.0	.	149	.	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67701207	67701207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CAND1	NM_018448	exon11	c.C2960T	p.T987M	TGGTTACGGCTGT	.	82.0	34.0	57.0	0.0	.	100	.	.	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78513703	78513703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NAV3	NM_014903	exon15	c.A3727G	p.I1243V	CCAGATATTGCCT	.	200.0	75.0	155.0	0.0	.	506	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88444170	88444170	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP290	NM_025114	exon53	c.A7170G	p.T2390T	GAGCTGTGTCTCT	.	65.0	4.0	41.0	0.0	.	195	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88486591	88486591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP290	NM_025114	exon29	c.G3328T	p.D1110Y	GTGCATCCAAATT	.	177.0	64.0	176.0	0.0	.	195	.	.	Atlas-SNP
WSCD2	9671	hgsc.bcm.edu	hg19	12	108642083	108642083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	WSCD2	NM_014653	exon9	c.A1661G	p.N554S	GGCGGAACCTAAC	.	95.0	4.0	70.0	0.0	.	125	.	.	Atlas-SNP
DAO	1610	hgsc.bcm.edu	hg19	12	109288106	109288106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DAO	NM_001917	exon7	c.A575G	p.D192G	AACGAGACCCCCT	.	92.0	4.0	98.0	0.0	.	58	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109613960	109613960	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACACB	NM_001093	exon8	c.A1329G	p.A443A	CCAGGCAGCAGAA	.	94.0	4.0	74.0	0.0	.	330	.	.	Atlas-SNP
ANAPC7	51434	hgsc.bcm.edu	hg19	12	110812082	110812082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ANAPC7	NM_016238	exon11	c.A1667G	p.E556G	GGACTCTCCTCCT	.	83.0	5.0	57.0	0.0	.	68	.	.	Atlas-SNP
ARPC3	10094	hgsc.bcm.edu	hg19	12	110874444	110874444	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARPC3	NM_005719	exon5	c.A297G	p.G99G	AGTGATTCCCAGC	.	94.0	4.0	102.0	0.0	.	7	.	.	Atlas-SNP
ACAD10	80724	hgsc.bcm.edu	hg19	12	112186252	112186252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACAD10	NM_001136538	exon18	c.A2710G	p.T904A	CCTCTGACGGTGT	.	97.0	4.0	63.0	0.0	.	93	.	.	Atlas-SNP
RPH3A	22895	hgsc.bcm.edu	hg19	12	113319635	113319635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RPH3A	NM_001143854	exon15	c.T1310C	p.L437P	ACCTCCTGCCGGG	.	111.0	5.0	99.0	0.0	.	98	.	.	Atlas-SNP
OAS3	4940	hgsc.bcm.edu	hg19	12	113384738	113384738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OAS3	NM_006187	exon4	c.A827G	p.E276G	GCTTCGAGGACCC	.	150.0	6.0	141.0	0.0	.	63	.	.	Atlas-SNP
TPCN1	53373	hgsc.bcm.edu	hg19	12	113730811	113730811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TPCN1	NM_001143819	exon27	c.A2402G	p.E801G	ACCGGGAGGCACG	.	87.0	5.0	71.0	0.0	.	109	.	.	Atlas-SNP
CIT	11113	hgsc.bcm.edu	hg19	12	120172998	120172998	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CIT	NM_001206999	exon25	c.G3123A	p.T1041T	TCGTTCCGTGATC	.	450.0	155.0	371.0	0.0	.	535	.	.	Atlas-SNP
OASL	8638	hgsc.bcm.edu	hg19	12	121469367	121469367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OASL	NM_198213	exon3	c.A535G	p.K179E	AGGCCTTGATCAG	.	64.0	4.0	59.0	0.0	.	49	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122246139	122246139	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SETD1B	NM_015048	exon4	c.A570G	p.E190E	CTATGAACTGTTG	.	142.0	6.0	114.0	0.0	.	105	.	.	Atlas-SNP
CLIP1	6249	hgsc.bcm.edu	hg19	12	122864937	122864937	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CLIP1	NM_002956	exon2	c.A63G	p.T21T	CAGAGCTGTGCTT	.	74.0	4.0	51.0	0.0	.	126	.	.	Atlas-SNP
EP400	57634	hgsc.bcm.edu	hg19	12	132527997	132527997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EP400	NM_015409	exon33	c.T6356C	p.F2119S	CTGACTTCATGGA	.	82.0	4.0	82.0	0.0	.	370	.	.	Atlas-SNP
P2RX2	22953	hgsc.bcm.edu	hg19	12	133196677	133196677	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	P2RX2	NM_170683	exon5	c.T549C	p.S183S	GGCCTCTGTCAGG	.	96.0	4.0	94.0	0.0	.	49	.	.	Atlas-SNP
ZMYM2	7750	hgsc.bcm.edu	hg19	13	20567643	20567643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZMYM2	NM_001190964	exon4	c.C431T	p.P144L	GACCTCCTGAGAC	.	113.0	43.0	91.0	0.0	.	191	.	.	Atlas-SNP
LATS2	26524	hgsc.bcm.edu	hg19	13	21555755	21555755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LATS2	NM_014572	exon6	c.A2515G	p.S839G	GGTCGCTGGGCTC	.	89.0	4.0	98.0	0.0	.	176	.	.	Atlas-SNP
SPATA13	221178	hgsc.bcm.edu	hg19	13	24797158	24797158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPATA13	NM_001166271	exon2	c.T91C	p.C31R	GCCCCCTGTGCAG	.	94.0	4.0	80.0	0.0	.	92	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25266639	25266639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP12A	NM_001185085	exon9	c.A1159G	p.T387A	GTGGAGACCCTCG	.	87.0	4.0	66.0	0.0	.	172	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25266681	25266681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP12A	NM_001185085	exon9	c.A1201G	p.T401A	ACTGGGACACTGA	.	125.0	7.0	101.0	0.0	.	172	.	.	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	hg19	13	32937516	32937516	+	Missense_Mutation	SNP	A	A	G	rs80359064	bycluster	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRCA2	NM_000059	exon18	c.A8177G	p.Y2726C	GGTGGTATGCTGT	.	168.0	66.0	139.0	0.0	.	812	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36046643	36046643	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NBEA	NM_015678	exon41	c.T6555C	p.D2185D	TGAGGATGATTCT	.	94.0	4.0	88.0	0.0	.	340	.	.	Atlas-SNP
WBP4	11193	hgsc.bcm.edu	hg19	13	41642739	41642739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	WBP4	NM_007187	exon5	c.C305T	p.P102L	CTATCCCACCTAC	.	64.0	4.0	50.0	0.0	.	40	.	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41941630	41941630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NAA16	NM_024561	exon14	c.A1595G	p.K532R	TGAGAAAGATGAC	.	91.0	4.0	74.0	0.0	.	74	.	.	Atlas-SNP
LACC1	144811	hgsc.bcm.edu	hg19	13	44455558	44455558	+	Missense_Mutation	SNP	C	C	A	rs150202700		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001128303	exon2	c.C437A	p.S146Y	AACAGTCCATTGA	.	76.0	25.0	76.0	0.0	.	.	.	C|1.000;A|0.000	Atlas-SNP
TDRD3	81550	hgsc.bcm.edu	hg19	13	61084796	61084796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	TDRD3_ENST00000535286,NS,carcinoma,0,2	TDRD3	NM_001146070	exon10	c.G1048A	p.E350K	AGATCTGAAGATG	.	43.0	3.0	35.0	0.0	.	123	.	.	Atlas-SNP
SCEL	8796	hgsc.bcm.edu	hg19	13	78143580	78143580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCEL	NM_003843	exon8	c.A473G	p.K158R	TAAAGAAGAAGAG	.	65.0	4.0	56.0	0.0	.	85	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103394092	103394092	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001146197	exon4	c.G8955A	p.E2985E	TTCTCTCTCCCAC	.	86.0	4.0	74.0	0.0	.	.	.	.	Atlas-SNP
SLC10A2	6555	hgsc.bcm.edu	hg19	13	103701761	103701761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC10A2	NM_000452	exon5	c.A797G	p.N266S	TGCGTGTTCTGCA	.	187.0	70.0	143.0	0.0	.	67	.	.	Atlas-SNP
DHRS4L1	728635	hgsc.bcm.edu	hg19	14	24517998	24517998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001082488	exon8	c.T653C	p.I218T	GACTTATCAAGAC	.	875.0	333.0	674.0	0.0	.	.	.	.	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	hg19	14	24523470	24523470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRRC16B	NM_138360	exon4	c.T206C	p.V69A	TCAATGTCCTGGA	.	94.0	4.0	61.0	0.0	.	120	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24879219	24879219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NYNRIN	NM_025081	exon4	c.A2219C	p.Q740P	AGTTTCAGATGGA	.	138.0	8.0	98.0	0.0	.	120	.	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	hg19	14	33291695	33291695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AKAP6	NM_004274	exon13	c.T4676C	p.L1559P	AACAGCTCTCCCT	.	93.0	4.0	90.0	0.0	.	308	.	.	Atlas-SNP
BAZ1A	11177	hgsc.bcm.edu	hg19	14	35227928	35227928	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BAZ1A	NM_013448	exon25	c.A4368G	p.K1456K	AACAAGTTTCAAA	.	65.0	4.0	58.0	0.0	.	128	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42357029	42357029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRFN5	NM_152447	exon3	c.A1201G	p.T401A	ACTTCTACCAAGT	.	92.0	4.0	62.0	0.0	.	269	.	.	Atlas-SNP
TMEM260	0	hgsc.bcm.edu	hg19	14	57083976	57083976	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_017799	exon9	c.A1017G	p.R339R	TTGGAGAGCAAAT	.	108.0	5.0	109.0	0.0	.	.	.	.	Atlas-SNP
PCNXL4	64430	hgsc.bcm.edu	hg19	14	60585412	60585412	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_022495	exon6	c.1240+2T>C	.	TTTAGGTAAGTAA	.	100.0	4.0	80.0	0.0	.	.	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68220472	68220472	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFYVE26	NM_015346	exon39	c.A7140G	p.G2380G	TTTCCCTCCCAGC	.	77.0	4.0	61.0	0.0	.	223	.	.	Atlas-SNP
C14orf1	11161	hgsc.bcm.edu	hg19	14	76117958	76117958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C14orf1	NM_007176	exon5	c.G363A	p.M121I	GACCAGCATACCC	.	104.0	37.0	76.0	0.0	.	13	.	.	Atlas-SNP
NRDE2	55051	hgsc.bcm.edu	hg19	14	90755002	90755002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_017970	exon11	c.T2717C	p.L906P	TTAGCCAGGCTAA	.	72.0	4.0	45.0	0.0	.	.	.	.	Atlas-SNP
CCDC88C	440193	hgsc.bcm.edu	hg19	14	91806281	91806281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC88C	NM_001080414	exon7	c.A571G	p.S191G	CCATGCTCCTCGA	.	181.0	12.0	147.0	0.0	.	192	.	.	Atlas-SNP
YY1	7528	hgsc.bcm.edu	hg19	14	100742844	100742844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	YY1	NM_003403	exon4	c.C921G	p.F307L	GATGTTCAGGGAT	.	105.0	27.0	85.0	0.0	.	20	.	.	Atlas-SNP
GABRB3	2562	hgsc.bcm.edu	hg19	15	26828551	26828551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GABRB3	NM_021912	exon5	c.A472G	p.T158A	CTGCTGTCGTGGT	.	78.0	4.0	93.0	0.0	.	338	.	.	Atlas-SNP
C15orf52	388115	hgsc.bcm.edu	hg19	15	40628995	40628995	+	Silent	SNP	T	T	C	rs143912259		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C15orf52	NM_207380	exon8	c.A894G	p.K298K	CTGTAGTTTCTGG	.	74.0	39.0	64.0	0.0	.	47	.	T|1.000;C|0.000	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42163597	42163597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPTBN5	NM_016642	exon29	c.T5318C	p.V1773A	TGACGGACCATGG	.	153.0	7.0	212.0	0.0	.	171	.	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49033896	49033896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP152	NM_001194998	exon26	c.A3995G	p.E1332G	TTTTTCTCAGCCC	.	89.0	4.0	70.0	0.0	.	145	.	.	Atlas-SNP
RORA	6095	hgsc.bcm.edu	hg19	15	60806947	60806947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RORA	NM_134260	exon5	c.A391G	p.R131G	TTCTCCTGAAAAA	.	99.0	4.0	107.0	0.0	.	114	.	.	Atlas-SNP
CLN6	54982	hgsc.bcm.edu	hg19	15	68504129	68504129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CLN6	NM_017882	exon4	c.G370A	p.A124T	TGCTGGCACCCAT	.	95.0	4.0	95.0	0.0	.	16	.	.	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	hg19	15	68620599	68620599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGA11	NM_001004439	exon16	c.T1903C	p.S635P	GGCGGGACCTGGA	.	130.0	8.0	92.0	0.0	.	110	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72170493	72170493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO9A	NM_006901	exon31	c.A5819G	p.E1940G	CGCTGCTCAAGCC	.	184.0	9.0	120.0	0.0	.	203	.	.	Atlas-SNP
SCAMP5	192683	hgsc.bcm.edu	hg19	15	75310253	75310253	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCAMP5	NM_001178111	exon6	c.C336T	p.F112F	TACCTTCATGGCT	.	135.0	50.0	121.0	0.0	.	34	.	.	Atlas-SNP
IQGAP1	8826	hgsc.bcm.edu	hg19	15	91043300	91043300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IQGAP1	NM_003870	exon38	c.T4934C	p.L1645P	TCAACCTCCTGAT	.	96.0	5.0	94.0	0.0	.	140	.	.	Atlas-SNP
LRRC28	123355	hgsc.bcm.edu	hg19	15	99892588	99892588	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	LRRC28,NS,malignant_melanoma,0,1	LRRC28	NM_144598	exon7	c.C607T	p.R203X	CGATCTCGAGAAC	.	25.0	2.0	33.0	0.0	.	38	.	.	Atlas-SNP
SNRPA1	6627	hgsc.bcm.edu	hg19	15	101827183	101827183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SNRPA1	NM_003090	exon5	c.A389G	p.H130R	CTGTAATGCTTCT	.	87.0	4.0	64.0	0.0	.	11	.	.	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	hg19	16	1551668	1551668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TELO2	NM_016111	exon11	c.T1366C	p.S456P	AGCACGTCCCTCG	.	138.0	6.0	121.0	0.0	.	44	.	.	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2153323	2153323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PKD1	NM_000296	exon23	c.A8735G	p.D2912G	CTGCTGTCCAGGG	.	86.0	4.0	110.0	0.0	.	184	.	.	Atlas-SNP
TIGD7	91151	hgsc.bcm.edu	hg19	16	3348989	3348989	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TIGD7	NM_033208	exon2	c.T1626C	p.P542P	AGTTGAAGGCCCA	.	80.0	4.0	92.0	0.0	.	41	.	.	Atlas-SNP
NLRC3	197358	hgsc.bcm.edu	hg19	16	3602250	3602250	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NLRC3	NM_178844	exon10	c.A2298G	p.G766G	CTGGGCTCCCATG	.	117.0	5.0	92.0	0.0	.	103	.	.	Atlas-SNP
ATF7IP2	80063	hgsc.bcm.edu	hg19	16	10527419	10527419	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATF7IP2	NM_024997	exon4	c.G873A	p.E291E	AAACGAGGAAAAT	.	190.0	47.0	168.0	0.0	.	40	.	.	Atlas-SNP
CIITA	4261	hgsc.bcm.edu	hg19	16	10989540	10989540	+	Missense_Mutation	SNP	A	A	G	rs143732812	bycluster	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CIITA	NM_000246	exon3	c.A214G	p.T72A	ACAGACACCATCA	.	136.0	6.0	102.0	0.0	.	92	.	A|1.000;G|0.000	Atlas-SNP
ACSM2A	123876	hgsc.bcm.edu	hg19	16	20497902	20497902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACSM2A	NM_001010845	exon15	c.T1636C	p.F546L	ATAGAGTTTGTCT	.	163.0	8.0	149.0	0.0	.	120	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21139101	21139101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH3	NM_017539	exon8	c.A1115G	p.E372G	AGTATTTCTGCTG	.	89.0	4.0	58.0	0.0	.	1142	.	.	Atlas-SNP
HS3ST2	9956	hgsc.bcm.edu	hg19	16	22926369	22926369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HS3ST2	NM_006043	exon2	c.A590G	p.D197G	CCCGAGACACCAA	.	81.0	4.0	89.0	0.0	.	59	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24801289	24801289	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6A	NM_014494	exon6	c.A1326G	p.Q442Q	TGGTCAACCTCAA	.	83.0	4.0	72.0	0.0	.	171	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24801444	24801444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6A	NM_014494	exon6	c.A1481G	p.Q494R	AGATGCAGGCTCC	.	86.0	4.0	90.0	0.0	.	171	.	.	Atlas-SNP
NFATC2IP	84901	hgsc.bcm.edu	hg19	16	28967623	28967623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NFATC2IP	NM_032815	exon5	c.T811C	p.C271R	ATCCGTTGCCGGG	.	90.0	4.0	68.0	0.0	.	24	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30732698	30732698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SRCAP	NM_006662	exon21	c.T3442C	p.S1148P	ACCACTTCTACCA	.	100.0	5.0	69.0	0.0	.	298	.	.	Atlas-SNP
ZNF629	23361	hgsc.bcm.edu	hg19	16	30793663	30793663	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF629	NM_001080417	exon3	c.C1986T	p.Y662Y	GCAGATGTAGGTC	.	56.0	18.0	58.0	0.0	.	44	.	.	Atlas-SNP
C16orf78	123970	hgsc.bcm.edu	hg19	16	49412388	49412388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	C16orf78,NS,malignant_melanoma,0,1	C16orf78	NM_144602	exon3	c.G278A	p.G93E	CCTTAGGAAAGAG	.	43.0	14.0	42.0	0.0	.	57	.	.	Atlas-SNP
CCDC135	84229	hgsc.bcm.edu	hg19	16	57758667	57758667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC135	NM_032269	exon12	c.T1678C	p.S560P	TTCCTCTCCTACC	.	123.0	7.0	84.0	0.0	.	97	.	.	Atlas-SNP
ZNF319	57567	hgsc.bcm.edu	hg19	16	58031121	58031121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF319	NM_020807	exon2	c.T1049C	p.M350T	AAGCCCATGGGGC	.	75.0	5.0	88.0	0.0	.	42	.	.	Atlas-SNP
AARS	16	hgsc.bcm.edu	hg19	16	70303590	70303590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AARS	NM_001605	exon7	c.T893C	p.L298P	TCAGCCAGCACCC	.	107.0	5.0	89.0	0.0	.	62	.	.	Atlas-SNP
COG4	25839	hgsc.bcm.edu	hg19	16	70553593	70553593	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COG4	NM_015386	exon2	c.A213G	p.Q71Q	GGTGTTTTGCTGT	.	115.0	5.0	88.0	0.0	.	64	.	.	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	hg19	16	70884467	70884467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HYDIN	NM_001270974	exon74	c.A12535G	p.T4179A	TTAATGTCACAGG	.	212.0	39.0	149.0	0.0	.	788	.	.	Atlas-SNP
ADAMTS18	170692	hgsc.bcm.edu	hg19	16	77326981	77326981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAMTS18	NM_199355	exon20	c.T3181C	p.W1061R	CGCTCCACGAAGA	.	63.0	4.0	44.0	0.0	.	270	.	.	Atlas-SNP
C16orf46	123775	hgsc.bcm.edu	hg19	16	81095083	81095083	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C16orf46	NM_001100873	exon3	c.C871T	p.L291L	CGGTCAGCAGGGA	.	208.0	67.0	184.0	0.0	.	57	.	.	Atlas-SNP
TAF1C	9013	hgsc.bcm.edu	hg19	16	84212770	84212770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAF1C	NM_005679	exon14	c.A2387G	p.Q796R	AACTCCTGGGAGG	.	68.0	4.0	71.0	0.0	.	60	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84229269	84229269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAD2	NM_139174	exon7	c.A1264G	p.S422G	TACATCAGCAACA	.	70.0	4.0	118.0	0.0	.	46	.	.	Atlas-SNP
ATP2C2	9914	hgsc.bcm.edu	hg19	16	84438813	84438813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP2C2	NM_014861	exon3	c.A290G	p.D97G	TTGCTGACAACAG	.	144.0	6.0	128.0	0.0	.	75	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88497617	88497617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF469	NM_001127464	exon2	c.T3655C	p.S1219P	TTGCGTTCTCCTC	.	88.0	4.0	73.0	0.0	.	121	.	.	Atlas-SNP
ACSF3	197322	hgsc.bcm.edu	hg19	16	89180759	89180759	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACSF3	NM_174917	exon6	c.A990G	p.S330S	GGTCTCAGGCTCA	.	139.0	9.0	121.0	0.0	.	40	.	.	Atlas-SNP
PELP1	27043	hgsc.bcm.edu	hg19	17	4585844	4585844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PELP1	NM_014389	exon5	c.A595G	p.M199V	CCTTCATTCCTTC	.	61.0	4.0	75.0	0.0	.	102	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7721766	7721766	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH2	NM_020877	exon68	c.T10524C	p.A3508A	CTTTGCTGTTAAA	.	57.0	33.0	80.0	0.0	.	498	.	.	Atlas-SNP
CNTROB	116840	hgsc.bcm.edu	hg19	17	7842848	7842848	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CNTROB	NM_001037144	exon8	c.T945C	p.A315A	GCAAGCTCTGACT	.	85.0	6.0	135.0	0.0	.	61	.	.	Atlas-SNP
ULK2	9706	hgsc.bcm.edu	hg19	17	19700945	19700945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ULK2	NM_001142610	exon18	c.A1573G	p.R525G	GCAGTCTAGCACC	.	33.0	4.0	42.0	0.0	.	142	.	.	Atlas-SNP
KSR1	8844	hgsc.bcm.edu	hg19	17	25932752	25932752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KSR1	NM_014238	exon15	c.T1562C	p.V521A	AAGAGGTGATGAA	.	147.0	8.0	110.0	0.0	.	151	.	.	Atlas-SNP
TP53I13	90313	hgsc.bcm.edu	hg19	17	27899619	27899619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TP53I13	NM_138349	exon6	c.A973G	p.T325A	CTGCTCACCCTGG	.	116.0	5.0	90.0	0.0	.	17	.	.	Atlas-SNP
CPD	1362	hgsc.bcm.edu	hg19	17	28770949	28770949	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CPD	NM_001304	exon11	c.T2503C	p.L835L	CGTCTCTTGGTTC	.	90.0	5.0	61.0	0.0	.	89	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29576138	29576138	+	Splice_Site	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	NF1_ENST00000358273,NS,carcinoma,0,3	NF1	NM_000267	exon30	c.4110+1G>C	.	TACCAGGTATGCT	.	94.0	28.0	87.0	0.0	.	1586	.	.	Atlas-SNP
ZNF830	91603	hgsc.bcm.edu	hg19	17	33289487	33289487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF830	NM_052857	exon1	c.T902C	p.L301S	GACGGTTGGACCG	.	93.0	4.0	73.0	0.0	.	26	.	.	Atlas-SNP
SLFN14	342618	hgsc.bcm.edu	hg19	17	33880034	33880034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLFN14	NM_001129820	exon3	c.A1619G	p.E540G	TCCATTTCCTCCT	.	109.0	9.0	112.0	0.0	.	43	.	.	Atlas-SNP
GAS2L2	246176	hgsc.bcm.edu	hg19	17	34073039	34073039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GAS2L2	NM_139285	exon6	c.T1477C	p.S493P	TTGGAGAACGGAC	.	77.0	4.0	53.0	0.0	.	94	.	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	hg19	17	38552571	38552571	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TOP2A	NM_001067	exon28	c.A3684G	p.K1228K	CTCTGCTTTCATT	.	46.0	4.0	69.0	0.0	.	124	.	.	Atlas-SNP
KRTAP1-4	728255	hgsc.bcm.edu	hg19	17	39186236	39186236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KRTAP1-4	NM_001257305	exon1	c.C95A	p.T32N	GAGCTGGTCTGGC	.	101.0	46.0	69.0	0.0	.	4	.	.	Atlas-SNP
KRTAP9-2	83899	hgsc.bcm.edu	hg19	17	39383332	39383332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KRTAP9-2	NM_031961	exon1	c.G426C	p.Q142H	CTGCCAGCCCTGC	.	239.0	17.0	181.0	0.0	.	24	.	.	Atlas-SNP
KRT17	3872	hgsc.bcm.edu	hg19	17	39778675	39778675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KRT17	NM_000422	exon3	c.G604T	p.A202S	GGTCGGCTCTGGC	.	608.0	224.0	438.0	0.0	.	57	.	.	Atlas-SNP
MPP3	4356	hgsc.bcm.edu	hg19	17	41907094	41907094	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MPP3	NM_001932	exon7	c.T369C	p.P123P	ATTGTCAGGCAGA	.	96.0	4.0	84.0	0.0	.	42	.	.	Atlas-SNP
SPOP	8405	hgsc.bcm.edu	hg19	17	47684733	47684733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPOP	NM_001007228	exon8	c.A716G	p.N239S	ACTCGATTCTATG	.	67.0	4.0	81.0	0.0	.	91	.	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48703642	48703642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CACNA1G	NM_018896	exon38	c.A6664G	p.S2222G	GAGCTGAGCTGGA	.	123.0	5.0	96.0	0.0	.	659	.	.	Atlas-SNP
CEP95	90799	hgsc.bcm.edu	hg19	17	62528114	62528114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP95	NM_138363	exon14	c.T1646C	p.L549P	GTGGCCTCCCAAA	.	80.0	4.0	57.0	0.0	.	103	.	.	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	hg19	17	65105654	65105654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HELZ	NM_014877	exon29	c.C4067T	p.P1356L	CGATTAGGGATTG	.	501.0	131.0	305.0	0.0	.	160	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71386431	71386431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SDK2	NM_001144952	exon29	c.A4187G	p.K1396R	CCTCTCTTCTCGG	.	84.0	4.0	59.0	0.0	.	219	.	.	Atlas-SNP
SLC9A3R1	9368	hgsc.bcm.edu	hg19	17	72759578	72759578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC9A3R1	NM_004252	exon3	c.A676G	p.T226A	GACGAGACCAAGC	.	242.0	12.0	152.0	0.0	.	12	.	.	Atlas-SNP
ITGB4	3691	hgsc.bcm.edu	hg19	17	73729645	73729645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGB4	NM_001005731	exon13	c.A1529G	p.K510R	AGGACAAGCCGTG	.	96.0	4.0	52.0	0.0	.	165	.	.	Atlas-SNP
CYGB	114757	hgsc.bcm.edu	hg19	17	74527573	74527573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CYGB	NM_134268	exon2	c.T344C	p.L115P	TGCTTGAGGGCGT	.	119.0	5.0	57.0	0.0	.	9	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76464900	76464900	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH17	NM_173628	exon55	c.A8577G	p.T2859T	GGAGTCTGTCATC	.	111.0	5.0	62.0	0.0	.	347	.	.	Atlas-SNP
CHMP6	79643	hgsc.bcm.edu	hg19	17	78972946	78972946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHMP6	NM_024591	exon8	c.C599G	p.A200G	TGGCAGCTTCGTA	.	128.0	37.0	95.0	0.0	.	16	.	.	Atlas-SNP
VAPA	9218	hgsc.bcm.edu	hg19	18	9931911	9931911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VAPA	NM_003574	exon2	c.A184G	p.R62G	TGTGTGAGGCCCA	.	97.0	4.0	73.0	0.0	.	28	.	.	Atlas-SNP
DSG4	147409	hgsc.bcm.edu	hg19	18	28971041	28971041	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DSG4	NM_001134453	exon7	c.C685T	p.Q229X	ATTAAGCAACACA	.	83.0	4.0	84.0	0.0	.	343	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31326119	31326119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ASXL3	NM_030632	exon12	c.T6307C	p.Y2103H	GTTTCCTATGACC	.	80.0	4.0	48.0	0.0	.	405	.	.	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	hg19	18	56247584	56247584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALPK2	NM_052947	exon4	c.G424T	p.E142X	CCTTCTCATCAAT	.	306.0	125.0	270.0	1.0	.	487	.	.	Atlas-SNP
PIGN	23556	hgsc.bcm.edu	hg19	18	59713126	59713126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PIGN	NM_176787	exon31	c.T2759C	p.L920P	AGTCTGAGTTTCT	.	94.0	5.0	77.0	0.0	.	62	.	.	Atlas-SNP
SERPINB10	5273	hgsc.bcm.edu	hg19	18	61587033	61587033	+	Silent	SNP	A	A	G	rs149788289		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SERPINB10	NM_005024	exon4	c.A384G	p.E128E	TTTAGAAGACATG	.	75.0	4.0	66.0	0.0	.	53	.	A|1.000;G|0.000	Atlas-SNP
MUM1	84939	hgsc.bcm.edu	hg19	19	1362334	1362334	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MUM1	NM_032853	exon6	c.A1200G	p.R400R	ACCAAGAGTCCTT	.	95.0	5.0	80.0	0.0	.	54	.	.	Atlas-SNP
REXO1	57455	hgsc.bcm.edu	hg19	19	1816497	1816497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	REXO1	NM_020695	exon14	c.T3389C	p.L1130P	ATGCTCAGCAGAA	.	77.0	4.0	71.0	0.0	.	55	.	.	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	hg19	19	3530851	3530851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FZR1	NM_001136198	exon7	c.A716G	p.E239G	GGTCTGAGCGGGT	.	87.0	4.0	67.0	0.0	.	42	.	.	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4200121	4200121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ANKRD24	NM_133475	exon5	c.A296G	p.E99G	GTCTGGAGGTGAT	.	114.0	5.0	100.0	0.0	.	180	.	.	Atlas-SNP
DCAF15	90379	hgsc.bcm.edu	hg19	19	14071164	14071164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DCAF15	NM_138353	exon11	c.T1592C	p.V531A	AGACAGTCAGTGT	.	85.0	4.0	115.0	0.0	.	30	.	.	Atlas-SNP
FKBP8	23770	hgsc.bcm.edu	hg19	19	18649200	18649200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FKBP8	NM_012181	exon5	c.A598G	p.T200A	TCAGGGTCACCTC	.	113.0	5.0	118.0	0.0	.	69	.	.	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	hg19	19	23938330	23938330	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF681	NM_138286	exon2	c.G27T	p.V9V	TATGGCCACATCC	.	36.0	10.0	36.0	0.0	.	76	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36229022	36229022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLL4	NM_014727	exon36	c.T7802C	p.V2601A	AGATGGTCATCGA	.	100.0	6.0	68.0	0.0	.	229	.	.	Atlas-SNP
NPHS1	4868	hgsc.bcm.edu	hg19	19	36342181	36342181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NPHS1	NM_004646	exon3	c.T380A	p.V127E	AGGATCACTCTGG	.	110.0	26.0	82.0	0.0	.	165	.	.	Atlas-SNP
C19orf33	64073	hgsc.bcm.edu	hg19	19	38795554	38795554	+	Missense_Mutation	SNP	A	A	G	rs79297344	bycluster	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C19orf33	NM_033520	exon4	c.A271G	p.K91E	AAGAAGAAGGAGA	.	310.0	14.0	226.0	0.0	.	9	.	.	Atlas-SNP
KCNK6	9424	hgsc.bcm.edu	hg19	19	38817935	38817935	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KCNK6	NM_004823	exon3	c.T834C	p.S278S	TGCCAGTTTCAAT	.	114.0	6.0	94.0	0.0	.	37	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38939069	38939069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RYR1	NM_001042723	exon10	c.T875C	p.L292P	TAGCGCTCACCGA	.	82.0	4.0	68.0	0.0	.	708	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41029483	41029483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPTBN4	NM_020971	exon17	c.T3794C	p.L1265P	AGGGCCTGCTGAG	.	86.0	5.0	62.0	0.0	.	213	.	.	Atlas-SNP
SPTBN4	57731	hgsc.bcm.edu	hg19	19	41066144	41066144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPTBN4	NM_020971	exon27	c.A5750G	p.E1917G	GCCGGGAGCAGGA	.	156.0	7.0	145.0	0.0	.	213	.	.	Atlas-SNP
HNRNPUL1	11100	hgsc.bcm.edu	hg19	19	41800283	41800283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HNRNPUL1	NM_007040	exon9	c.C1307A	p.T436K	AGACCACATGGGC	.	235.0	82.0	190.0	0.0	.	73	.	.	Atlas-SNP
CIC	23152	hgsc.bcm.edu	hg19	19	42798458	42798458	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CIC	NM_015125	exon18	c.4327+2T>C	.	TACAGGTGCCGTG	.	69.0	4.0	71.0	0.0	.	249	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	hg19	19	42855634	42855634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MEGF8	NM_001271938	exon17	c.A2909G	p.Q970R	GGTGCCAGTCCAC	.	81.0	4.0	76.0	0.0	.	358	.	.	Atlas-SNP
CADM4	199731	hgsc.bcm.edu	hg19	19	44127546	44127546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CADM4	NM_145296	exon9	c.A1103G	p.E368G	CTTGCTTCTCCCT	.	126.0	9.0	91.0	0.0	.	26	.	.	Atlas-SNP
CEACAM20	125931	hgsc.bcm.edu	hg19	19	45026890	45026890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEACAM20	NM_001102600	exon4	c.A524G	p.E175G	ACCACCTCCCCAC	.	121.0	6.0	90.0	0.0	.	31	.	.	Atlas-SNP
SLC1A5	6510	hgsc.bcm.edu	hg19	19	47280496	47280496	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC1A5	NM_005628	exon6	c.T1225C	p.L409L	AGTCCAAGGACTG	.	82.0	5.0	49.0	0.0	.	31	.	.	Atlas-SNP
PLA2G4C	8605	hgsc.bcm.edu	hg19	19	48565265	48565265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLA2G4C	NM_001159322	exon14	c.A1277G	p.D426G	AAAGGATCTCCGG	.	59.0	26.0	45.0	0.0	.	76	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657886	49657886	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HRC	NM_002152	exon1	c.G609A	p.E203E	GGCCTCCTCTTCC	.	158.0	10.0	137.0	0.0	.	85	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HRC	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	173.0	16.0	129.0	0.0	.	85	.	.	Atlas-SNP
BRSK1	84446	hgsc.bcm.edu	hg19	19	55815939	55815939	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRSK1	NM_032430	exon14	c.A1368G	p.S456S	CTTTTCACCGGAG	.	73.0	5.0	46.0	0.0	.	192	.	.	Atlas-SNP
ZNF835	90485	hgsc.bcm.edu	hg19	19	57175640	57175640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF835	NM_001005850	exon2	c.G927T	p.Q309H	GCAGTCCTGGCAC	.	21.0	12.0	16.0	0.0	.	106	.	.	Atlas-SNP
ZNF264	9422	hgsc.bcm.edu	hg19	19	57723920	57723920	+	Silent	SNP	C	C	T	rs145421065		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	ZNF264,colon,carcinoma,0,1	ZNF264	NM_003417	exon4	c.C1455T	p.C485C	TGAGTGCGTGGAG	.	72.0	3.0	50.0	0.0	.	65	.	C|1.000;T|0.000	Atlas-SNP
PSMF1	9491	hgsc.bcm.edu	hg19	20	1145055	1145055	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PSMF1	NM_006814	exon6	c.T699C	p.P233P	ACTTCCTCCAGGC	.	118.0	6.0	111.0	0.0	.	27	.	.	Atlas-SNP
CST5	1473	hgsc.bcm.edu	hg19	20	23860229	23860229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CST5	NM_001900	exon1	c.A85G	p.T29A	CCAAGGTCCTAGA	.	99.0	4.0	63.0	0.0	.	24	.	.	Atlas-SNP
NINL	22981	hgsc.bcm.edu	hg19	20	25478915	25478915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NINL	NM_025176	exon9	c.T1100C	p.L367P	GTCATGAGCTCGT	.	108.0	6.0	86.0	0.0	.	148	.	.	Atlas-SNP
ID1	3397	hgsc.bcm.edu	hg19	20	30193564	30193564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ID1	NM_002165	exon1	c.T374C	p.V125A	TGCCGGTCCGGGC	.	108.0	5.0	121.0	0.0	.	12	.	.	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	hg19	20	34240764	34240764	+	Silent	SNP	A	A	G	rs201125389		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	RBM12,rectum,NS,0,2	RBM12	NM_001198840	exon2	c.T2481C	p.P827P	GGGGCCAGGCCCA	.	41.0	3.0	39.0	0.0	.	93	.	A|0.996;G|0.004	Atlas-SNP
SNX21	90203	hgsc.bcm.edu	hg19	20	44469288	44469288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SNX21	NM_001042633	exon5	c.T469C	p.S157P	ACACCCTCGCCGT	.	86.0	4.0	76.0	0.0	.	23	.	.	Atlas-SNP
LRRC3	81543	hgsc.bcm.edu	hg19	21	45877204	45877204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRRC3	NM_030891	exon2	c.T677C	p.V226A	ACTATGTGCGCCA	.	77.0	5.0	84.0	0.0	.	22	.	.	Atlas-SNP
PCBP3	54039	hgsc.bcm.edu	hg19	21	47360058	47360058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PCBP3	NM_020528	exon13	c.A1024G	p.T342A	CAGATCACCATCA	.	90.0	4.0	73.0	0.0	.	82	.	.	Atlas-SNP
SUSD2	56241	hgsc.bcm.edu	hg19	22	24582054	24582054	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SUSD2	NM_019601	exon9	c.G1410A	p.E470E	CGGAGAGTACGTG	.	220.0	52.0	136.0	0.0	.	68	.	.	Atlas-SNP
MORC2	22880	hgsc.bcm.edu	hg19	22	31333805	31333805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MORC2	NM_014941	exon15	c.A1180G	p.I394V	TACCGATGGCAAT	.	228.0	110.0	140.0	0.0	.	78	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	hg19	22	40660706	40660706	+	Missense_Mutation	SNP	G	G	A	rs367663125	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6B	NM_001162501	exon5	c.G472A	p.G158S	CTTGGAGGTGCTG	.	138.0	36.0	94.0	0.0	.	195	.	.	Atlas-SNP
ZBED4	9889	hgsc.bcm.edu	hg19	22	50280096	50280096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZBED4	NM_014838	exon2	c.T2786C	p.V929A	GGGAGGTCATGCA	.	111.0	5.0	165.0	0.0	.	102	.	.	Atlas-SNP
PIM3	415116	hgsc.bcm.edu	hg19	22	50355358	50355358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	PIM3_ENST00000360612,NS,carcinoma,0,1	PIM3	NM_001001852	exon4	c.A515G	p.K172R	ACATTAAGGACGA	.	74.0	4.0	109.0	0.0	.	15	.	.	Atlas-SNP
STS	412	hgsc.bcm.edu	hg19	X	7177425	7177425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	STS	NM_000351	exon5	c.A433G	p.T145A	AGCAAGACTGACT	.	98.0	4.0	60.0	0.0	.	64	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	31497178	31497178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DMD	NM_004006	exon58	c.A8590G	p.S2864G	GAGTACTCATGAT	.	93.0	4.0	72.0	0.0	.	2127	.	.	Atlas-SNP
CHDC2	286464	hgsc.bcm.edu	hg19	X	36156122	36156122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_173695	exon9	c.T1093C	p.S365P	GACCTTTCAGATG	.	91.0	4.0	98.0	0.0	.	.	.	.	Atlas-SNP
KDM5C	8242	hgsc.bcm.edu	hg19	X	53226132	53226132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KDM5C	NM_004187	exon19	c.A2717G	p.E906G	CCCCTCTCCAACA	.	76.0	6.0	68.0	0.0	.	385	.	.	Atlas-SNP
FOXR2	139628	hgsc.bcm.edu	hg19	X	55650773	55650773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FOXR2	NM_198451	exon1	c.A629G	p.H210R	ACCCCCACTGTGG	.	86.0	4.0	59.0	0.0	.	42	.	.	Atlas-SNP
PJA1	64219	hgsc.bcm.edu	hg19	X	68382107	68382107	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PJA1	NM_145119	exon2	c.A975G	p.K325K	TTCCCGTTTGTCT	.	88.0	5.0	68.0	0.0	.	106	.	.	Atlas-SNP
ERCC6L	54821	hgsc.bcm.edu	hg19	X	71426725	71426725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ERCC6L	NM_017669	exon2	c.A1892G	p.E631G	AGATCCTCGATTG	.	83.0	6.0	82.0	0.0	.	98	.	.	Atlas-SNP
IL1RAPL2	26280	hgsc.bcm.edu	hg19	X	104728324	104728324	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IL1RAPL2	NM_017416	exon6	c.T717C	p.P239P	CAAGCCTCCCAAG	.	431.0	23.0	180.0	0.0	.	105	.	.	Atlas-SNP
KIAA1210	57481	hgsc.bcm.edu	hg19	X	118221124	118221124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIAA1210	NM_020721	exon11	c.A4069G	p.K1357E	TCTGCTTTACAGG	.	92.0	4.0	43.0	0.0	.	171	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	hg19	X	122336604	122336604	+	Missense_Mutation	SNP	C	C	G	rs72609489		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GRIA3	NM_001256743	exon3	c.C385G	p.P129A	GGTGGGCCCGCCA	.	133.0	15.0	67.0	0.0	.	386	.	.	Atlas-SNP
HCFC1	3054	hgsc.bcm.edu	hg19	X	153230097	153230097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HCFC1	NM_005334	exon2	c.A274G	p.T92A	GGCGAGTCCCGTC	.	250.0	11.0	97.0	0.0	.	284	.	.	Atlas-SNP
G6PD	2539	hgsc.bcm.edu	hg19	X	153774307	153774307	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	G6PD	NM_000402	exon2	c.C154T	p.Q52X	CGCCCTGGAAAAG	.	60.0	4.0	33.0	0.0	.	73	.	.	Atlas-SNP
USP9Y	8287	hgsc.bcm.edu	hg19	Y	14928278	14928278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	USP9Y	NM_004654	exon32	c.A4829G	p.E1610G	ACAGTGAGGTAAA	.	87.0	4.0	54.0	0.0	.	49	.	.	Atlas-SNP
USP9Y	8287	hgsc.bcm.edu	hg19	Y	14951989	14951989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	USP9Y	NM_004654	exon36	c.A5537G	p.N1846S	CAGAAAATGAGTT	.	68.0	4.0	48.0	0.0	.	49	.	.	Atlas-SNP
SRP72	6731	hgsc.bcm.edu	hg19	4	57340266	57340277	+	In_Frame_Del	DEL	ATCTCGTCCGAA	ATCTCGTCCGAA	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	ATCTCGTCCGAA	ATCTCGTCCGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SRP72	NM_001267722	exon4	c.400_411del	p.134_137del	.	.	122.0	20.0	124.0	0.0	.	59	.	.	Atlas-Indel,Pindel
ZIC1	7545	hgsc.bcm.edu	hg19	3	147128512	147128526	+	In_Frame_Del	DEL	GCCGCGCATCACGGC	GCCGCGCATCACGGC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	GCCGCGCATCACGGC	GCCGCGCATCACGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZIC1	NM_003412	exon1	c.612_626del	p.204_209del	.	.	49.0	15.0	116.0	0.0	.	141	.	.	Atlas-Indel,Pindel
SLC24A4	123041	hgsc.bcm.edu	hg19	14	92953018	92953024	+	Frame_Shift_Del	DEL	TATCGGA	TATCGGA	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	TATCGGA	TATCGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC24A4	NM_153646	exon14	c.1430_1436del	p.477_479del	.	.	240.0	38.0	224.0	0.0	.	112	.	.	Atlas-Indel,Pindel
BRCA2	675	hgsc.bcm.edu	hg19	13	32953916	32953924	+	In_Frame_Del	DEL	GATTTATAT	GATTTATAT	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	GATTTATAT	GATTTATAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRCA2	NM_000059	exon23	c.8982_8990del	p.2994_2997del	.	.	162.0	17.0	175.0	0.0	.	812	.	.	Atlas-Indel,Pindel
KDM4D	55693	hgsc.bcm.edu	hg19	11	94732090	94732104	+	In_Frame_Del	DEL	CTGGGCCCCTGTGCC	CTGGGCCCCTGTGCC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CTGGGCCCCTGTGCC	CTGGGCCCCTGTGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KDM4D	NM_018039	exon3	c.1553_1567del	p.518_523del	.	.	135.0	20.0	125.0	0.0	.	58	.	.	Atlas-Indel,Pindel
RBM6	10180	hgsc.bcm.edu	hg19	3	50103698	50103698	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RBM6	NM_005777	exon17	c.2705delT	p.I902fs	.	.	52.0	16.0	44.0	0.0	.	85	.	.	Atlas-Indel,Pindel
ZFAT	57623	hgsc.bcm.edu	hg19	8	135545117	135545124	+	Frame_Shift_Del	DEL	CACGTTGG	CACGTTGG	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CACGTTGG	CACGTTGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFAT	NM_020863	exon12	c.3069_3076del	p.1023_1026del	.	.	63.0	10.0	66.0	0.0	.	265	.	.	Atlas-Indel,Pindel
GSE1	23199	hgsc.bcm.edu	hg19	16	85687882	85687996	+	Frame_Shift_Del	DEL	ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC	ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC	ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_014615	exon4	c.427_443del	p.143_148del	.	.	75.0	19.0	0.0	0.0	.	.	.	.	Pindel
XRCC6	2547	hgsc.bcm.edu	hg19	22	42057392	42057407	+	Frame_Shift_Del	DEL	AGCTTGTTTACCCACC	AGCTTGTTTACCCACC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	AGCTTGTTTACCCACC	AGCTTGTTTACCCACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	XRCC6	NM_001469	exon12	c.1579_1594del	p.527_532del	.	.	101.0	14.0	0.0	0.0	.	64	.	.	Pindel
EPN2	22905	hgsc.bcm.edu	hg19	17	19186829	19186873	+	In_Frame_Del	DEL	CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT	CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT	CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EPN2	NM_148921	exon3	c.396_440del	p.132_147del	.	.	50.0	15.0	0.0	0.0	.	52	.	.	Pindel
