Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SH3GLB1	51100	hgsc.bcm.edu	hg19	1	87170595	87170595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SH3GLB1	NM_001206652	exon1	c.G13A	p.D5N	ATCATGGACTTCA	.	13.0	8.0	4.0	0.0	.	57	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152327575	152327575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.,1	FLG2	NM_001014342	exon3	c.G2687A	p.G896D	CCAAAGCCACTGG	.	162.0	30.0	152.0	0.0	.	431	.	.	Atlas-SNP
S100A7	6278	hgsc.bcm.edu	hg19	1	153430321	153430321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	S100A7	NM_002963	exon3	c.G267T	p.Q89H	ATGGCTCTGCTTG	.	199.0	35.0	199.0	0.0	.	23	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167096333	167096333	+	Silent	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DUSP27	NM_001080426	exon5	c.G1965C	p.G655G	CAGCGGGAGCATT	.	92.0	17.0	69.0	0.0	.	235	.	.	Atlas-SNP
FAIM3	9214	hgsc.bcm.edu	hg19	1	207083133	207083133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FAIM3	NM_005449	exon6	c.C922A	p.P308T	AGCGCGGTCGCGG	.	8.0	7.0	0.0	0.0	.	36	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	215932017	215932017	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	USH2A	NM_206933	exon58	c.C11309G	p.S3770X	GGTGTTGACATAG	.	82.0	12.0	94.0	0.0	.	1168	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216495239	216495239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	USH2A	NM_007123	exon9	c.A1630G	p.T544A	CTTCAGTGAAGCT	.	121.0	92.0	172.0	0.0	.	1168	.	.	Atlas-SNP
SMC6	79677	hgsc.bcm.edu	hg19	2	17877588	17877588	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SMC6	NM_001142286	exon22	c.C2500T	p.R834X	GTTCTCGTTTCTT	.	111.0	18.0	139.0	0.0	.	102	.	.	Atlas-SNP
DPYSL5	56896	hgsc.bcm.edu	hg19	2	27156166	27156166	+	Missense_Mutation	SNP	C	C	T	rs372829541		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	DPYSL5,NS,carcinoma,0,1	DPYSL5	NM_001253724	exon7	c.C755T	p.S252L	GTATCTCGGCTGG	.	118.0	55.0	119.0	0.0	.	69	.	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	hg19	2	28825786	28825786	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PLB1	NM_153021	exon39	c.C2772T	p.A924A	GCAGGCCAGGTAG	.	29.0	11.0	30.0	0.0	.	255	.	.	Atlas-SNP
THADA	63892	hgsc.bcm.edu	hg19	2	43458154	43458154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	THADA	NM_001083953	exon38	c.T5795G	p.L1932R	ACACTGAGAACTA	.	132.0	65.0	104.0	0.0	.	131	.	.	Atlas-SNP
CLEC4F	165530	hgsc.bcm.edu	hg19	2	71043685	71043685	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CLEC4F	NM_173535	exon4	c.T828C	p.N276N	CAAACTATTTCTT	.	208.0	110.0	250.0	0.0	.	95	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71892431	71892431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DYSF	NM_001130987	exon47	c.A5314G	p.I1772V	GAAGAGATAGGTG	.	59.0	33.0	48.0	0.0	.	536	.	.	Atlas-SNP
HK2	3099	hgsc.bcm.edu	hg19	2	75113781	75113781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HK2	NM_000189	exon15	c.C2200T	p.L734F	CTTTCACTCAACC	.	51.0	27.0	49.0	0.0	.	85	.	.	Atlas-SNP
TGFBRAP1	9392	hgsc.bcm.edu	hg19	2	105885897	105885897	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TGFBRAP1	NM_004257	exon11	c.C2238T	p.T746T	AAATTCGGTGGCG	.	110.0	40.0	90.0	0.0	.	70	.	.	Atlas-SNP
CDCA7	83879	hgsc.bcm.edu	hg19	2	174231134	174231134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CDCA7	NM_031942	exon8	c.G1159A	p.E387K	GGTGAAGAGGTCA	.	94.0	28.0	88.0	0.0	.	48	.	.	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52584506	52584506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PBRM1	NM_018313	exon29	c.T4507C	p.Y1503H	TCAGGTAGGCCTC	.	35.0	28.0	49.0	0.0	.	1252	.	.	Atlas-SNP
FILIP1L	11259	hgsc.bcm.edu	hg19	3	99643072	99643072	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FILIP1L	NM_182909	exon5	c.605+2T>C	.	AGCCTTACCTTTC	.	192.0	37.0	189.0	0.0	.	154	.	.	Atlas-SNP
SLCO2A1	6578	hgsc.bcm.edu	hg19	3	133654650	133654650	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLCO2A1	NM_005630	exon13	c.C1782T	p.C594C	GTAGGCGCAGGCC	.	118.0	33.0	115.0	0.0	.	72	.	.	Atlas-SNP
MRFAP1	93621	hgsc.bcm.edu	hg19	4	6642727	6642727	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MRFAP1	NM_001272053	exon2	c.C138T	p.H46H	CGAGCACGGGCGG	.	118.0	89.0	98.0	0.0	.	10	.	.	Atlas-SNP
LAP3	51056	hgsc.bcm.edu	hg19	4	17579110	17579110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	LAP3	NM_015907	exon1	c.G22A	p.A8T	CTTCCGGCTGCGG	.	76.0	13.0	17.0	0.0	.	50	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79366872	79366872	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FRAS1	NM_001166133	exon42	c.G5862C	p.K1954N	GGTAAAGACTTTG	.	148.0	21.0	148.0	0.0	.	779	.	.	Atlas-SNP
FHDC1	85462	hgsc.bcm.edu	hg19	4	153896719	153896719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FHDC1	NM_033393	exon11	c.G2276A	p.S759N	TGGGTAGCAGCGA	.	78.0	17.0	67.0	0.0	.	102	.	.	Atlas-SNP
ASIC5	51802	hgsc.bcm.edu	hg19	4	156784657	156784657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_017419	exon2	c.A290T	p.E97V	TGAACCTCAATGG	.	104.0	19.0	99.0	0.0	.	.	.	.	Atlas-SNP
PRKAA1	5562	hgsc.bcm.edu	hg19	5	40777637	40777637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PRKAA1	NM_006251	exon2	c.G179A	p.R60Q	TTCTGTCGATTGA	.	271.0	28.0	198.0	0.0	.	27	.	.	Atlas-SNP
ABCC10	89845	hgsc.bcm.edu	hg19	6	43406411	43406411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ABCC10	NM_001198934	exon8	c.G2005A	p.A669T	GGCCTGGCCACCC	.	103.0	19.0	41.0	0.0	.	118	.	.	Atlas-SNP
SESN1	27244	hgsc.bcm.edu	hg19	6	109315748	109315748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SESN1	NM_014454	exon6	c.G1037T	p.R346L	TCATCTCGACATT	.	54.0	17.0	85.0	0.0	.	29	.	.	Atlas-SNP
SNX8	29886	hgsc.bcm.edu	hg19	7	2302995	2302995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SNX8	NM_013321	exon7	c.C785A	p.A262E	CCTATTGCACTGA	.	36.0	16.0	41.0	0.0	.	46	.	.	Atlas-SNP
SP4	6671	hgsc.bcm.edu	hg19	7	21470288	21470288	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SP4	NM_003112	exon3	c.G1505C	p.S502T	CTTCAAGTGGTGG	.	172.0	94.0	143.0	0.0	.	91	.	.	Atlas-SNP
ZNF777	27153	hgsc.bcm.edu	hg19	7	149152627	149152627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF777	NM_015694	exon2	c.G487C	p.D163H	GGGTGTCCTTTTG	.	72.0	31.0	60.0	0.0	.	63	.	.	Atlas-SNP
CPA6	57094	hgsc.bcm.edu	hg19	8	68658311	68658311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CPA6	NM_020361	exon1	c.C54A	p.C18X	GAGCCAGCAAAGA	.	75.0	28.0	88.0	0.0	.	69	.	.	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	hg19	8	105361092	105361092	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001257317	exon2	c.G312T	p.G104G	CACAGGGATCGTC	.	155.0	25.0	121.0	0.0	.	.	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110495324	110495324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PKHD1L1	NM_177531	exon57	c.T9566A	p.V3189E	ATGCTGTGGATTG	.	134.0	35.0	102.0	0.0	.	522	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124361670	124361670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ATAD2	NM_014109	exon14	c.C1661T	p.T554I	AGCAGGGTGGAAA	.	59.0	31.0	51.0	0.0	.	160	.	.	Atlas-SNP
DGAT1	8694	hgsc.bcm.edu	hg19	8	145540267	145540267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DGAT1	NM_012079	exon17	c.G1417A	p.V473I	CGTGGACGTACAT	.	69.0	40.0	37.0	0.0	.	26	.	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	hg19	9	13109010	13109010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MPDZ	NM_003829	exon45	c.A5904T	p.L1968F	GAAGCCTAAGCCA	.	59.0	31.0	51.0	0.0	.	324	.	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107547843	107547843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ABCA1	NM_005502	exon49	c.G6479C	p.G2160A	GCAAGTCCAAAGA	.	60.0	7.0	84.0	0.0	.	244	.	.	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	hg19	9	139370175	139370175	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SEC16A	NM_014866	exon3	c.G1893T	p.V631V	ACCAACCACGTTG	.	45.0	33.0	66.0	0.0	.	249	.	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37506693	37506693	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ANKRD30A	NM_052997	exon33	c.T2986C	p.L996L	GAAGAATTAGGAA	.	217.0	46.0	279.0	0.0	.	448	.	.	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	hg19	10	69797855	69797855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HERC4	NM_022079	exon5	c.C458G	p.S153C	CCTTTAGAAAGTG	.	125.0	27.0	158.0	0.0	.	78	.	.	Atlas-SNP
FGFR2	2263	hgsc.bcm.edu	hg19	10	123325033	123325033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FGFR2	NM_022970	exon3	c.C295T	p.P99S	CTCTAGGCGTGGC	.	78.0	44.0	75.0	0.0	.	758	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123843951	123843951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TACC2	NM_206862	exon4	c.G1936T	p.G646W	ACGGACGGGCCCC	.	30.0	16.0	32.0	0.0	.	271	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1277989	1277989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MUC5B	NM_002458	exon39	c.G16225A	p.V5409M	ATCTGCGTGCAGG	.	39.0	10.0	23.0	0.0	.	473	.	.	Atlas-SNP
STIM1	6786	hgsc.bcm.edu	hg19	11	4076832	4076832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	STIM1	NM_003156	exon4	c.C462A	p.F154L	GACCTTCCGGAAG	.	123.0	17.0	112.0	0.0	.	55	.	.	Atlas-SNP
APBB1	322	hgsc.bcm.edu	hg19	11	6422643	6422643	+	Missense_Mutation	SNP	C	C	G	rs142613637		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	APBB1	NM_001164	exon10	c.G1520C	p.R507P	GCATTACGCCGTT	.	38.0	16.0	48.0	0.0	.	73	.	C|1.000;G|0.000	Atlas-SNP
OR2D3	120775	hgsc.bcm.edu	hg19	11	6942827	6942827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OR2D3	NM_001004684	exon1	c.G595T	p.A199S	CCTCCTGCCCTCC	.	264.0	135.0	249.0	0.0	.	51	.	.	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	hg19	11	18333521	18333521	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HPS5	NM_181507	exon3	c.A159G	p.G53G	TCCTCCTCCTGAA	.	59.0	12.0	57.0	0.0	.	70	.	.	Atlas-SNP
SLC35C1	55343	hgsc.bcm.edu	hg19	11	45832329	45832329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLC35C1	NM_018389	exon2	c.G538A	p.G180S	GCAGGGGGCTTCT	.	54.0	17.0	30.0	0.0	.	23	.	.	Atlas-SNP
SUV420H1	51111	hgsc.bcm.edu	hg19	11	67925241	67925241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SUV420H1	NM_017635	exon11	c.T2572G	p.L858V	ACCTCAAGCGCTT	.	178.0	101.0	135.0	0.0	.	125	.	.	Atlas-SNP
RARG	5916	hgsc.bcm.edu	hg19	12	53607025	53607025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	RARG,NS,carcinoma,0,1	RARG	NM_000966	exon9	c.C1021T	p.R341C	CCATGCGGTCTAT	.	67.0	35.0	36.0	0.0	.	53	.	.	Atlas-SNP
PIWIL1	9271	hgsc.bcm.edu	hg19	12	130827612	130827612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PIWIL1	NM_004764	exon3	c.G156C	p.Q52H	ACGGCAGAGAGGA	.	218.0	35.0	167.0	0.0	.	157	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103392139	103392139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001146197	exon4	c.C10908A	p.F3636L	CAATTTGAAGTGA	.	192.0	76.0	177.0	0.0	.	.	.	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	hg19	14	56079097	56079097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KTN1	NM_004986	exon2	c.G331T	p.V111F	AGTAGTGTTAGGG	.	157.0	49.0	119.0	0.0	.	147	.	.	Atlas-SNP
RIN3	79890	hgsc.bcm.edu	hg19	14	93118817	93118817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RIN3	NM_024832	exon6	c.C1423T	p.P475S	ACCCTCCCAGCTC	.	28.0	23.0	57.0	0.0	.	81	.	.	Atlas-SNP
OR4N4	283694	hgsc.bcm.edu	hg19	15	22382912	22382912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	OR4N4,NS,carcinoma,0,1	OR4N4	NM_001005241	exon1	c.C440T	p.A147V	TGTTGGCTCTGTG	.	393.0	26.0	352.0	1.0	.	108	.	.	Atlas-SNP
TRIP4	9325	hgsc.bcm.edu	hg19	15	64698610	64698610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TRIP4	NM_016213	exon6	c.A779G	p.E260G	GTCTGGAGAAGGC	.	113.0	24.0	98.0	0.0	.	43	.	.	Atlas-SNP
NLRC3	197358	hgsc.bcm.edu	hg19	16	3613089	3613089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	NLRC3	NM_178844	exon5	c.G1849A	p.E617K	TGGCCTCCTGGGC	.	58.0	40.0	21.0	0.0	.	103	.	.	Atlas-SNP
STX4	6810	hgsc.bcm.edu	hg19	16	31045531	31045531	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	STX4	NM_001272096	exon4	c.C111T	p.L37L	CCCTCTCGGTCAC	.	60.0	32.0	75.0	0.0	.	28	.	.	Atlas-SNP
N4BP1	9683	hgsc.bcm.edu	hg19	16	48595690	48595690	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	N4BP1	NM_153029	exon2	c.T864A	p.S288S	AGAATCAGAAAAT	.	67.0	44.0	98.0	0.0	.	121	.	.	Atlas-SNP
MT1F	4494	hgsc.bcm.edu	hg19	16	56692645	56692645	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MT1F	NM_005949	exon2	c.C87T	p.C29C	CTCCTGCAAGAAG	.	42.0	25.0	54.0	0.0	.	3	.	.	Atlas-SNP
KDM6B	23135	hgsc.bcm.edu	hg19	17	7755291	7755291	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KDM6B	NM_001080424	exon18	c.C4188T	p.F1396F	CAACTTCTGCTCC	.	89.0	14.0	79.0	0.0	.	95	.	.	Atlas-SNP
ENTHD2	146705	hgsc.bcm.edu	hg19	17	79203158	79203158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_144679	exon12	c.C1148G	p.P383R	GGGAGAGGCACAG	.	101.0	40.0	138.0	0.0	.	.	.	.	Atlas-SNP
KCNN1	3780	hgsc.bcm.edu	hg19	19	18092829	18092829	+	Silent	SNP	G	G	A	rs374014650		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KCNN1	NM_002248	exon5	c.G810A	p.T270T	CAACACGCGCTTC	.	100.0	17.0	35.0	0.0	.	74	.	.	Atlas-SNP
MED25	81857	hgsc.bcm.edu	hg19	19	50331706	50331706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	MED25_ENST00000312881,NS,carcinoma,0,2	MED25	NM_030973	exon4	c.G306T	p.K102N	CTGCAGGTTCATG	.	86.0	46.0	63.0	0.0	.	98	.	.	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	hg19	19	52570784	52570784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF841	NM_001136499	exon7	c.G351T	p.M117I	TTCCAACATCACT	.	273.0	40.0	235.0	0.0	.	183	.	.	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	hg19	19	53014990	53014990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	ENSG00000221895,caecum,carcinoma,0,1	.	NM_001099694	exon6	c.G1356T	p.E452D	TGGAGAGAAATCT	.	128.0	41.0	89.0	0.0	.	.	.	.	Atlas-SNP
ZIM3	114026	hgsc.bcm.edu	hg19	19	57646911	57646911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	ZIM3,NS,carcinoma,0,1	ZIM3	NM_052882	exon5	c.C794G	p.S265C	ATGCAGGATGATT	.	224.0	31.0	181.0	1.0	.	107	.	.	Atlas-SNP
ZSCAN4	201516	hgsc.bcm.edu	hg19	19	58187569	58187569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZSCAN4	NM_152677	exon3	c.G56A	p.G19E	ATCTTGGATCAGA	.	158.0	88.0	109.0	0.0	.	72	.	.	Atlas-SNP
ZNF551	90233	hgsc.bcm.edu	hg19	19	58199625	58199625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF551	NM_138347	exon3	c.A1982G	p.H661R	TTCGACATCGGAG	.	71.0	14.0	50.0	0.0	.	65	.	.	Atlas-SNP
SAMSN1	64092	hgsc.bcm.edu	hg19	21	15858388	15858388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SAMSN1	NM_001256370	exon9	c.G1171T	p.D391Y	AGATGTCTGAGCT	.	149.0	37.0	137.0	0.0	.	112	.	.	Atlas-SNP
IGSF5	150084	hgsc.bcm.edu	hg19	21	41137531	41137531	+	Missense_Mutation	SNP	G	G	T	rs372378189	bycluster;alternate_allele	TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	IGSF5,rectum,carcinoma,0,1	IGSF5	NM_001080444	exon3	c.G170T	p.R57L	AGGCTCGCTTCAA	.	62.0	23.0	49.0	0.0	.	62	.	.	Atlas-SNP
DCAF8L2	347442	hgsc.bcm.edu	hg19	X	27765469	27765469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DCAF8L2	NM_001136533	exon1	c.C457T	p.P153S	GCGGGTCCACAAG	.	68.0	60.0	86.0	0.0	.	79	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101736252	101736253	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	UTP20	NM_014503	exon33	c.4130_4131insAC	p.V1377fs	.	.	111.0	52.0	81.0	0.0	.	222	.	.	Atlas-Indel,Pindel
CMAS	55907	hgsc.bcm.edu	hg19	12	22199469	22199479	+	Frame_Shift_Del	DEL	GCGGCCCTGGA	GCGGCCCTGGA	-	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	GCGGCCCTGGA	GCGGCCCTGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CMAS	NM_018686	exon1	c.231_241del	p.77_81del	.	.	79.0	39.0	24.0	0.0	.	45	.	.	Atlas-Indel,Pindel
BAP1	8314	hgsc.bcm.edu	hg19	3	52442000	52442062	+	In_Frame_Del	DEL	CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA	CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA	-	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA	CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	BAP1	NM_004656	exon5	c.288_350del	p.96_117del	.	.	40.0	21.0	122.0	0.0	.	371	.	.	Pindel
