Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
NEK2	4751	hgsc.bcm.edu	hg19	1	211848801	211848801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NEK2	NM_002497	exon1	c.C21A	p.D7E	TTCATAGTCCTCA	.	67.0	10.0	80.0	0.0	.	49	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240371393	240371393	+	Missense_Mutation	SNP	C	C	A	rs201701711	bycluster;alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FMN2	NM_020066	exon5	c.C3281A	p.A1094E	CCGGAGCGGGCAT	.	58.0	13.0	76.0	0.0	.	451	.	C|0.999;T|0.001	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121747077	121747077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GLI2	NM_005270	exon13	c.G3587A	p.G1196E	GCCCTGGGGGCCT	.	78.0	19.0	63.0	0.0	.	187	.	.	Atlas-SNP
PTPN23	25930	hgsc.bcm.edu	hg19	3	47452056	47452056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTPN23	NM_015466	exon20	c.C2768T	p.T923I	CTTACACCTACCC	.	62.0	18.0	135.0	0.0	.	85	.	.	Atlas-SNP
SMC4	10051	hgsc.bcm.edu	hg19	3	160141354	160141354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SMC4	NM_005496	exon13	c.T2161G	p.L721V	GACAACTTGGATC	.	103.0	24.0	85.0	0.0	.	135	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195513066	195513066	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MUC4	NM_018406	exon2	c.C5385A	p.V1795V	GTCGGTGACAGGA	.	411.0	53.0	539.0	0.0	.	1505	.	.	Atlas-SNP
DTHD1	401124	hgsc.bcm.edu	hg19	4	36296584	36296584	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DTHD1	NM_001170700	exon4	c.C1191T	p.N397N	TAAAAACAACCTT	.	152.0	39.0	223.0	0.0	.	63	.	.	Atlas-SNP
ARHGAP24	83478	hgsc.bcm.edu	hg19	4	86643102	86643102	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	ARHGAP24_ENST00000395184,NS,carcinoma,0,1	ARHGAP24	NM_001025616	exon3	c.A245T	p.K82M	CAGGGAAGTTCCT	.	172.0	22.0	207.0	0.0	.	116	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158254023	158254023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GRIA2	NM_000826	exon7	c.G935A	p.R312H	CCTTCCGCAACCT	.	118.0	15.0	121.0	0.0	.	358	.	.	Atlas-SNP
LIFR	3977	hgsc.bcm.edu	hg19	5	38482266	38482266	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LIFR	NM_002310	exon20	c.G2725T	p.E909X	GAACCTCAACATT	.	86.0	14.0	90.0	0.0	.	348	.	.	Atlas-SNP
PDE4D	5144	hgsc.bcm.edu	hg19	5	58511685	58511685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PDE4D	NM_001104631	exon2	c.G565T	p.E189X	AGGACTCCCGTCG	.	76.0	25.0	97.0	0.0	.	345	.	.	Atlas-SNP
PCDHGA4	56111	hgsc.bcm.edu	hg19	5	140736620	140736620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PCDHGA4	NM_018917	exon1	c.C1853T	p.A618V	TATTTGCAGTGGG	.	143.0	15.0	177.0	0.0	.	150	.	.	Atlas-SNP
BMP5	653	hgsc.bcm.edu	hg19	6	55620459	55620459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BMP5	NM_021073	exon7	c.C1237G	p.H413D	GTACGTGGTCAGG	.	266.0	20.0	242.0	0.0	.	94	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152644792	152644792	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	SYNE1_ENST00000265368,NS,carcinoma,0,2	SYNE1	NM_182961	exon82	c.G15738A	p.E5246E	TAAGAGCTCTGCT	.	69.0	4.0	86.0	0.0	.	3227	.	.	Atlas-SNP
C9orf57	138240	hgsc.bcm.edu	hg19	9	74667237	74667237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	C9orf57	NM_001128618	exon5	c.G461T	p.C154F	TGATTGCAGCAGT	.	79.0	13.0	86.0	0.0	.	16	.	.	Atlas-SNP
KRT83	3889	hgsc.bcm.edu	hg19	12	52712959	52712959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	KRT83	NM_002282	exon2	c.C574A	p.L192M	CCTCCAGCACCTC	.	121.0	31.0	142.0	0.0	.	64	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80862537	80862537	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTPRQ	NM_001145026	exon4	c.A443T	p.K148M	CAGGAAAGTCCTT	.	122.0	18.0	98.0	0.0	.	119	.	.	Atlas-SNP
TM9SF2	9375	hgsc.bcm.edu	hg19	13	100206607	100206607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TM9SF2	NM_004800	exon14	c.A1538G	p.E513G	TTCCTGAACAGTC	.	145.0	24.0	167.0	0.0	.	52	.	.	Atlas-SNP
COQ6	51004	hgsc.bcm.edu	hg19	14	74422552	74422552	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COQ6	NM_182476	exon4	c.T402G	p.D134E	TAAGGATAATTTA	.	91.0	17.0	122.0	0.0	.	27	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62182512	62182512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	VPS13C	NM_020821	exon67	c.A9193G	p.T3065A	CATCGGTGAAAAG	.	70.0	16.0	112.0	0.0	.	506	.	.	Atlas-SNP
FSD2	123722	hgsc.bcm.edu	hg19	15	83451591	83451591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FSD2	NM_001007122	exon4	c.A922G	p.T308A	CTATTGTTTCCAT	.	220.0	24.0	286.0	0.0	.	45	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86265519	86265519	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AKAP13	NM_006738	exon25	c.T6449G	p.V2150G	TGCTTGTAACTCA	.	138.0	14.0	136.0	0.0	.	394	.	.	Atlas-SNP
SLC5A11	115584	hgsc.bcm.edu	hg19	16	24902218	24902218	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SLC5A11	NM_052944	exon9	c.A693G	p.G231G	GGAAGGACTGAAG	.	61.0	12.0	84.0	0.0	.	97	.	.	Atlas-SNP
POLR2A	5430	hgsc.bcm.edu	hg19	17	7400976	7400976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	POLR2A	NM_000937	exon7	c.A989T	p.Q330L	CCATGCAGAAGTC	.	73.0	20.0	89.0	0.0	.	157	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9060181	9060181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MUC16	NM_024690	exon3	c.A27265C	p.T9089P	TTGATGTAGCCCC	.	108.0	14.0	111.0	0.0	.	4315	.	.	Atlas-SNP
ZNF793	390927	hgsc.bcm.edu	hg19	19	38028241	38028241	+	Silent	SNP	C	C	T	rs371897623		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	ZNF793_ENST00000445217,NS,carcinoma,0,1	ZNF793	NM_001013659	exon8	c.C681T	p.H227H	ACCCCACGTCTGT	.	72.0	15.0	59.0	0.0	.	50	.	.	Atlas-SNP
ZNF607	84775	hgsc.bcm.edu	hg19	19	38189048	38189048	+	Missense_Mutation	SNP	T	T	A	rs371361210		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF607	NM_032689	exon5	c.A1984T	p.I662L	GATGTATACTAAG	.	120.0	22.0	123.0	0.0	.	82	.	.	Atlas-SNP
EPB41L1	2036	hgsc.bcm.edu	hg19	20	34761813	34761813	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	EPB41L1	NM_001258329	exon3	c.C114A	p.G38G	CCACGGCCACCCA	.	71.0	17.0	81.0	0.0	.	111	.	.	Atlas-SNP
DHX35	60625	hgsc.bcm.edu	hg19	20	37621023	37621023	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DHX35	NM_021931	exon7	c.C537T	p.H179H	AGCCCACGAGAGG	.	130.0	11.0	138.0	0.0	.	82	.	.	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	hg19	20	56139383	56139383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	PCK1,right_upper_lobe,carcinoma,0,1	PCK1	NM_002591	exon7	c.G1120A	p.D374N	GGCATTGATGAGC	.	94.0	16.0	131.0	0.0	.	95	.	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	hg19	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	GNAS_ENST00000371100,NS,adenocarcinoma,0,338	GNAS	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	95.0	28.0	97.0	0.0	.	867	.	C|1.000	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61511712	61511712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DIDO1	NM_001193369	exon16	c.G5596A	p.A1866T	CGGGGGCGCCCGT	.	53.0	9.0	50.0	0.0	.	321	.	.	Atlas-SNP
ITIH6	347365	hgsc.bcm.edu	hg19	X	54785172	54785172	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_198510	exon8	c.C1335T	p.N445N	TCCCCGGTTTTCC	.	80.0	24.0	120.0	0.0	.	.	.	.	Atlas-SNP
ZXDA	7789	hgsc.bcm.edu	hg19	X	57936066	57936066	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZXDA	NM_007156	exon1	c.C789T	p.G263G	CACCACGCCTGGA	.	36.0	11.0	36.0	0.0	.	70	.	.	Atlas-SNP
MID2	11043	hgsc.bcm.edu	hg19	X	107084301	107084301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MID2	NM_012216	exon2	c.C406T	p.R136X	AGCGAGCGAATTG	.	75.0	12.0	90.0	0.0	.	122	.	.	Atlas-SNP
AMMECR1	9949	hgsc.bcm.edu	hg19	X	109444278	109444278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AMMECR1	NM_015365	exon5	c.G791A	p.G264E	TCCCATCCTGTAG	.	72.0	10.0	97.0	0.0	.	16	.	.	Atlas-SNP
AKNA	80709	hgsc.bcm.edu	hg19	9	117122236	117122236	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AKNA	NM_030767	exon10	c.2232delG	p.L744fs	.	.	49.0	11.0	76.0	0.0	.	119	.	.	Atlas-INDEL
ZBTB10	65986	hgsc.bcm.edu	hg19	8	81412242	81412243	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZBTB10	NM_023929	exon2	c.1486_1487insA	p.Q496fs	.	.	91.0	26.0	72.0	0.0	.	51	.	.	Atlas-INDEL
