Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ITPR1	3708	hgsc.bcm.edu	37	3	4693825	4693829	+	Frame_Shift_Del	DEL	TGTCG	TGTCG	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	TGTCG	TGTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ITPR1	NM_001099952	exon11	c.873_877del	p.291_293del	.	.	156.0	35.0	116.0	0.0	.	.	.	.	.
KIAA0040	9674	hgsc.bcm.edu	37	1	175129933	175129934	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_001162893	exon5	c.217_218insG	p.K73fs	.	.	87.0	11.0	66.0	0.0	.	.	.	.	.
KRTAP5-7	440050	hgsc.bcm.edu	37	11	71238736	71238762	+	In_Frame_Del	DEL	CTGCTGTTCCTCAGGCTGTGGGTCATC	CTGCTGTTCCTCAGGCTGTGGGTCATC	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	CTGCTGTTCCTCAGGCTGTGGGTCATC	CTGCTGTTCCTCAGGCTGTGGGTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KRTAP5-7	NM_001012503	exon1	c.389_415del	p.130_139del	.	.	180.0	23.0	156.0	0.0	.	.	.	.	.
RANBP10	57610	hgsc.bcm.edu	37	16	67839340	67839340	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RANBP10	NM_020850	exon2	c.339delA	p.G113fs	.	.	91.0	33.0	65.0	0.0	.	.	.	.	.
UGT2B4	7363	hgsc.bcm.edu	37	4	70360887	70360889	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	UGT2B4	NM_021139	exon1	c.692_694del	p.231_232del	.	.	99.0	15.0	102.0	0.0	.	.	.	.	.
GRIA1	2890	hgsc.bcm.edu	37	5	153085452	153085460	+	In_Frame_Del	DEL	GTGAGTGTT	GTGAGTGTT	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	GTGAGTGTT	GTGAGTGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GRIA1	NM_001258021	exon11	c.1677_1685del	p.559_562del	.	.	378.0	34.0	271.0	0.0	.	.	.	.	.
SGOL2	151246	hgsc.bcm.edu	37	2	201399836	201399838	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SGOL2	NM_152524	exon3	c.250_252del	p.84_84del	.	.	80.0	16.0	40.0	0.0	.	.	.	.	.
RMDN1	51115	hgsc.bcm.edu	37	8	87492510	87492511	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_016033	exon6	c.637_638insT	p.I213fs	.	.	111.0	34.0	112.0	0.0	.	.	.	.	.
CUL9	23113	hgsc.bcm.edu	37	6	43181019	43181022	+	Frame_Shift_Del	DEL	TCAA	TCAA	-	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	TCAA	TCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CUL9-529	NM_015089	exon27	c.5344_5347del	p.1782_1783del	.	.	116.0	20.0	120.0	0.0	.	.	.	.	.
SLC7A13	157724	hgsc.bcm.edu	37	8	87235302	87235302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLC7A13	NM_138817	exon2	c.C716T	p.P239L	CATTTGGGAATTG	.	87.0	22.0	63.0	0.0	.	.	.	.	.
CDK5RAP2	55755	hgsc.bcm.edu	37	9	123298712	123298712	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CDK5RAP2	NM_018249	exon7	c.A600G	p.S200S	CATCTCTGAAAGC	.	82.0	29.0	72.0	0.0	.	.	.	.	.
PLEC	5339	hgsc.bcm.edu	37	8	144995161	144995161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PLEC	NM_201380	exon32	c.G9239A	p.R3080Q	AACTGCCGCAGCA	.	39.0	4.0	49.0	0.0	.	.	.	.	.
USP42	84132	hgsc.bcm.edu	37	7	6194392	6194392	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	USP42	NM_032172	exon15	c.C3207T	p.Y1069Y	CCTGTACGCTGCC	.	14.0	4.0	21.0	0.0	.	.	.	.	.
BRIX1	55299	hgsc.bcm.edu	37	5	34925045	34925045	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BRIX1	NM_018321	exon9	c.T757G	p.L253V	CCAACTTTATATG	.	33.0	7.0	24.0	0.0	.	.	.	.	.
ZIC1	7545	hgsc.bcm.edu	37	3	147128637	147128637	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZIC1	NM_003412	exon1	c.C738T	p.F246F	AACTTTCAGCACC	.	184.0	46.0	153.0	0.0	.	.	.	.	.
KRT79	338785	hgsc.bcm.edu	37	12	53225247	53225247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KRT79	NM_175834	exon2	c.G641A	p.G214E	AGCCTCCCCCGCT	.	105.0	7.0	96.0	0.0	.	.	.	.	.
MAGEL2	54551	hgsc.bcm.edu	37	15	23889752	23889752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_019066	exon1	c.G3138T	p.M1046I	TTTCACCATCTCC	.	188.0	39.0	190.0	0.0	.	.	.	.	.
SCG3	29106	hgsc.bcm.edu	37	15	51975586	51975586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SCG3	NM_013243	exon4	c.G352A	p.D118N	CTGATCGATGATT	.	34.0	4.0	25.0	0.0	.	.	.	.	.
CHD2	1106	hgsc.bcm.edu	37	15	93499777	93499777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CHD2	NM_001271	exon16	c.T1898C	p.L633P	AAACTCTGATTGA	.	46.0	12.0	51.0	0.0	.	.	.	.	.
EVC2	132884	hgsc.bcm.edu	37	4	5633629	5633629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	EVC2	NM_147127	exon11	c.G1601A	p.R534K	TCATTTCTCTGGA	.	73.0	12.0	71.0	0.0	.	.	.	.	.
CTCFL	140690	hgsc.bcm.edu	37	20	56073609	56073609	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CTCFL	NM_001269041	exon10	c.G1989A	p.K663K	CTCTCACTTATCC	.	159.0	41.0	111.0	0.0	.	.	.	.	.
BHLHB9	80823	hgsc.bcm.edu	37	X	102004068	102004068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BHLHB9	NM_001142530	exon2	c.G145A	p.G49R	AAGACAGGGTCTA	.	376.0	108.0	368.0	0.0	.	.	.	.	.
TET3	200424	hgsc.bcm.edu	37	2	74275063	74275063	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_144993	exon1	c.G1614C	p.R538S	CTCCAGGGACAGC	.	135.0	7.0	101.0	0.0	.	.	.	.	.
ARR3	407	hgsc.bcm.edu	37	X	69501565	69501565	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ARR3	NM_004312	exon17	c.C1116T	p.G372G	GAAAGGCGAGGAG	.	100.0	25.0	89.0	0.0	.	.	.	.	.
NACA	4666	hgsc.bcm.edu	37	12	57115063	57115063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	NACA	NM_001113203	exon3	c.A251T	p.Q84L	GATGACTGGGGAA	.	61.0	8.0	48.0	0.0	.	.	.	.	.
GPR173	54328	hgsc.bcm.edu	37	X	53106558	53106558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GPR173	NM_018969	exon2	c.G755A	p.G252E	GCCGTGGGCCCAT	.	49.0	10.0	40.0	0.0	.	.	.	.	.
GRAMD2	196996	hgsc.bcm.edu	37	15	72455767	72455767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GRAMD2	NM_001012642	exon10	c.C796T	p.P266S	GCATGGGCCATGC	.	110.0	36.0	71.0	0.0	.	.	.	.	.
PCDHAC1	56135	hgsc.bcm.edu	37	5	140307840	140307840	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDHAC1	NM_031882	exon1	c.G1363C	p.A455P	TTCGTTGCTGAAA	.	57.0	6.0	34.0	0.0	.	.	.	.	.
HECTD1	25831	hgsc.bcm.edu	37	14	31570253	31570253	+	Missense_Mutation	SNP	G	G	T	rs11549801	alternate_allele	TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	HECTD1	NM_015382	exon43	c.C7716A	p.S2572R	TGGATAGCTTGCA	.	87.0	4.0	92.0	0.0	.	.	.	.	.
OVOL2	58495	hgsc.bcm.edu	37	20	18005322	18005322	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	OVOL2	NM_021220	exon4	c.C786G	p.H262Q	CTCCTGGTGTGCG	.	293.0	22.0	237.0	0.0	.	.	.	.	.
PSMD13	5719	hgsc.bcm.edu	37	11	251919	251919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PSMD13	NM_175932	exon10	c.G1024C	p.V342L	CCCCGAGTGTTGG	.	196.0	10.0	124.0	0.0	.	.	.	.	.
LILRB1	10859	hgsc.bcm.edu	37	19	55143640	55143640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LILRB1	NM_001081637	exon5	c.C613T	p.P205S	AACTCTCCCTATG	.	290.0	69.0	280.0	0.0	.	.	.	.	.
DMD	1756	hgsc.bcm.edu	37	X	31165436	31165436	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DMD	NM_004006	exon75	c.C10753T	p.Q3585X	CCAGCTGTTTATT	.	165.0	10.0	154.0	0.0	.	.	.	.	.
SLITRK2	84631	hgsc.bcm.edu	37	X	144903985	144903985	+	Silent	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLITRK2	NM_001144005	exon5	c.C42A	p.A14A	CGTGGCCGGGATC	.	199.0	37.0	167.0	0.0	.	.	.	.	.
RIMS2	9699	hgsc.bcm.edu	37	8	104930679	104930679	+	Silent	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RIMS2	NM_001100117	exon9	c.C2047A	p.R683R	ATACCGCGAATAC	.	121.0	25.0	121.0	0.0	.	.	.	.	.
FADD	8772	hgsc.bcm.edu	37	11	70049591	70049591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FADD	NM_003824	exon1	c.A26G	p.H9R	TGCTGCACTCGGT	.	56.0	10.0	53.0	0.0	.	.	.	.	.
CXorf30	645090	hgsc.bcm.edu	37	X	36319234	36319234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CXorf30	NM_001098843	exon8	c.A248T	p.K83M	TACTGAAGTTAAC	.	284.0	16.0	251.0	0.0	.	.	.	.	.
OR4K17	390436	hgsc.bcm.edu	37	14	20586348	20586348	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	OR4K17,arm,malignant_melanoma,+2	OR4K17	NM_001004715	exon1	c.T783C	p.P261P	CTCTCCTACTGGG	.	150.0	6.0	145.0	0.0	.	.	.	.	.
FBN2	2201	hgsc.bcm.edu	37	5	127686699	127686699	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FBN2	NM_001999	exon22	c.2675-2A>G	.	GCTGTCTGAAAAG	.	94.0	6.0	51.0	0.0	.	.	.	.	.
MYOF	26509	hgsc.bcm.edu	37	10	95161196	95161196	+	Nonsense_Mutation	SNP	G	G	A	rs199504349		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	MYOF	NM_133337	exon12	c.C1096T	p.R366X	CAGCTCGGTAGAT	.	98.0	28.0	56.0	0.0	.	.	.	.	.
TARP	0	hgsc.bcm.edu	37	7	38305036	38305036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_001003806	exon2	c.T59C	p.L20P	TTGTCCAGTGACT	.	240.0	65.0	181.0	0.0	.	.	.	.	.
PKHD1L1	93035	hgsc.bcm.edu	37	8	110539189	110539189	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PKHD1L1	NM_177531	exon77	c.G12661T	p.G4221X	CTGGTTGGAAGAA	.	127.0	28.0	123.0	0.0	.	.	.	.	.
PKHD1L1	93035	hgsc.bcm.edu	37	8	110417294	110417294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PKHD1L1	NM_177531	exon16	c.C1604T	p.P535L	CCAGCCCATGTGT	.	99.0	24.0	97.0	0.0	.	.	.	.	.
GLI3	2737	hgsc.bcm.edu	37	7	42262748	42262748	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GLI3	NM_000168	exon2	c.C105T	p.A35A	GCTGGAGGCAACG	.	81.0	23.0	96.0	0.0	.	.	.	.	.
TRAPPC8	22878	hgsc.bcm.edu	37	18	29419280	29419280	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TRAPPC8	NM_014939	exon27	c.A3978G	p.Q1326Q	CCTTTTTTGATGA	.	50.0	19.0	41.0	0.0	.	.	.	.	.
FUK	197258	hgsc.bcm.edu	37	16	70508239	70508239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FUK	NM_145059	exon16	c.G1985T	p.S662I	GGCTAAGCAGGTG	.	94.0	4.0	85.0	0.0	.	.	.	.	.
ZAR1L	646799	hgsc.bcm.edu	37	13	32878064	32878064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZAR1L	NM_001136571	exon4	c.C918G	p.D306E	TCTCTTGTCTTTG	.	89.0	7.0	108.0	0.0	.	.	.	.	.
KIAA1244	57221	hgsc.bcm.edu	37	6	138640960	138640960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KIAA1244	NM_020340	exon28	c.C4595T	p.A1532V	AGCACGCTATTGG	.	182.0	61.0	168.0	0.0	.	.	.	.	.
AMOT	154796	hgsc.bcm.edu	37	X	112022293	112022293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	AMOT	NM_001113490	exon10	c.G3089C	p.S1030T	GCTGGACTTGCAG	.	252.0	43.0	259.0	0.0	.	.	.	.	.
PLCE1	51196	hgsc.bcm.edu	37	10	96084287	96084287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PLCE1	NM_016341	exon31	c.C6683A	p.A2228E	AAGGTGCAGGAAA	.	56.0	24.0	59.0	0.0	.	.	.	.	.
CAPZB	832	hgsc.bcm.edu	37	1	19746233	19746233	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CAPZB	NM_004930	exon2	c.G15C	p.Q5H	GTCCAGCTGCTGA	.	95.0	5.0	90.0	0.0	.	.	.	.	.
STIM2	57620	hgsc.bcm.edu	37	4	27024472	27024472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	STIM2	NM_001169118	exon13	c.T2119G	p.S707A	TCATGTTCCTCAG	.	118.0	23.0	103.0	0.0	.	.	.	.	.
GPR174	84636	hgsc.bcm.edu	37	X	78426850	78426850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GPR174	NM_032553	exon1	c.C346G	p.R116G	GTGCGACGATTTT	.	491.0	124.0	445.0	0.0	.	.	.	.	.
YIPF3	25844	hgsc.bcm.edu	37	6	43480544	43480544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	YIPF3	NM_015388	exon7	c.C735G	p.F245L	GAGGTAGAAGAGG	.	190.0	37.0	155.0	0.0	.	.	.	.	.
SRRM4	84530	hgsc.bcm.edu	37	12	119563215	119563215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SRRM4	NM_194286	exon7	c.G545A	p.R182H	CTCACCGCCACCG	.	72.0	23.0	70.0	0.0	.	.	.	.	.
MYH15	22989	hgsc.bcm.edu	37	3	108147461	108147461	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	MYH15	NM_014981	exon28	c.G3640C	p.E1214Q	CGAGCTCAGCCAG	.	297.0	12.0	228.0	0.0	.	.	.	.	.
GIN1	54826	hgsc.bcm.edu	37	5	102433403	102433403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	GIN1	NM_017676	exon5	c.G722A	p.S241N	GGTGTACTTTCCG	.	127.0	7.0	91.0	0.0	.	.	.	.	.
MICA	100507436	hgsc.bcm.edu	37	6	31378413	31378413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_001177519	exon2	c.C164T	p.P55L	GTCAGCCCTTCCT	.	235.0	56.0	217.0	0.0	.	.	.	.	.
SLC9A6	10479	hgsc.bcm.edu	37	X	135067806	135067806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SLC9A6	NM_006359	exon1	c.G145A	p.E49K	GGCGGAGAGGCTA	.	60.0	15.0	69.0	0.0	.	.	.	.	.
PEG3	5178	hgsc.bcm.edu	37	19	57327699	57327699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PEG3	NM_001146184	exon9	c.A2111T	p.Q704L	ATTTTCTGATGCT	.	101.0	20.0	100.0	0.0	.	.	.	.	.
CXorf58	254158	hgsc.bcm.edu	37	X	23953337	23953337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CXorf58	NM_152761	exon7	c.C580A	p.P194T	GAGGCCCCTGCAT	.	26.0	8.0	37.0	0.0	.	.	.	.	.
PCDHA5	56143	hgsc.bcm.edu	37	5	140203594	140203594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDHA5	NM_018908	exon1	c.G2234T	p.G745V	CGGTGGGGAGCTG	.	129.0	16.0	88.0	0.0	.	.	.	.	.
PPP5C	5536	hgsc.bcm.edu	37	19	46850460	46850460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PPP5C	NM_006247	exon1	c.A107G	p.N36S	AGGCCAATGACTA	.	53.0	9.0	37.0	0.0	.	.	.	.	.
ZNF536	9745	hgsc.bcm.edu	37	19	31038889	31038889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF536	NM_014717	exon4	c.G2363A	p.G788D	ATGCCGGCACGCA	.	79.0	14.0	85.0	0.0	.	.	.	.	.
PRSS16	10279	hgsc.bcm.edu	37	6	27220730	27220730	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PRSS16	NM_005865	exon9	c.1150+2T>C	.	CTTCTGTAAGTGA	.	166.0	12.0	133.0	0.0	.	.	.	.	.
DOK3	79930	hgsc.bcm.edu	37	5	176931755	176931755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DOK3	NM_024872	exon5	c.G802A	p.G268S	CGGAGCCGAACTT	.	135.0	28.0	101.0	0.0	.	.	.	.	.
SPHKAP	80309	hgsc.bcm.edu	37	2	228882436	228882436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SPHKAP	NM_030623	exon7	c.A3134C	p.K1045T	ATGATCTTGGCTG	.	98.0	24.0	84.0	0.0	.	.	.	.	.
ZNF430	80264	hgsc.bcm.edu	37	19	21240807	21240807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF430	NM_025189	exon5	c.A1693G	p.R565G	TACTGGAGAGAAA	.	19.0	11.0	25.0	0.0	.	.	.	.	.
LEPR	3953	hgsc.bcm.edu	37	1	66102511	66102511	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LEPR	NM_002303	exon20	c.T3311A	p.F1104Y	GCCCATTCCCAGC	.	135.0	7.0	157.0	0.0	.	.	.	.	.
ITIH4	3700	hgsc.bcm.edu	37	3	52863215	52863215	+	Silent	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ITIH4	NM_001166449	exon2	c.G171A	p.V57V	ATTGACCACTCGG	.	127.0	37.0	105.0	0.0	.	.	.	.	.
FHAD1	114827	hgsc.bcm.edu	37	1	15675645	15675645	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FHAD1	NM_052929	exon18	c.G2388C	p.E796D	GAAGGAGGTATGA	.	56.0	14.0	65.0	0.0	.	.	.	.	.
C6orf170	221322	hgsc.bcm.edu	37	6	121625734	121625734	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	C6orf170	NM_152730	exon7	c.T807C	p.N269N	AATATGATTTTCC	.	60.0	10.0	76.0	0.0	.	.	.	.	.
HAGHL	84264	hgsc.bcm.edu	37	16	777559	777559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	HAGHL	NM_032304	exon1	c.T50G	p.V17G	ACCTGGTCATCGA	.	130.0	27.0	95.0	0.0	.	.	.	.	.
COL6A3	1293	hgsc.bcm.edu	37	2	238245049	238245049	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	COL6A3	NM_004369	exon40	c.T8694C	p.T2898T	TATAATAGTCACA	.	123.0	23.0	86.0	0.0	.	.	.	.	.
CHIC1	53344	hgsc.bcm.edu	37	X	72783227	72783227	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CHIC1	NM_001039840	exon1	c.C107A	p.S36X	CGTCGTCGTCGGT	.	136.0	9.0	107.0	0.0	.	.	.	.	.
SSR3	6747	hgsc.bcm.edu	37	3	156266720	156266720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SSR3	NM_007107	exon3	c.G333T	p.K111N	AGACATCTTTCTA	.	71.0	19.0	60.0	0.0	.	.	.	.	.
PCDH15	65217	hgsc.bcm.edu	37	10	56129002	56129002	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PCDH15	NM_001142763	exon6	c.G367C	p.V123L	ACTGGACCTGCAC	.	76.0	22.0	89.0	0.0	.	.	.	.	.
LBP	3929	hgsc.bcm.edu	37	20	36983752	36983752	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	LBP	NM_004139	exon5	c.G531A	p.L177L	GTGGCTGTTGAAC	.	102.0	39.0	92.0	0.0	.	.	.	.	.
CLASP1	23332	hgsc.bcm.edu	37	2	122216520	122216520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CLASP1	NM_001207051	exon13	c.G1210A	p.D404N	CATGGTCAAACTT	.	103.0	22.0	61.0	0.0	.	.	.	.	.
XPOT	11260	hgsc.bcm.edu	37	12	64833062	64833062	+	Silent	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	XPOT	NM_007235	exon23	c.G2772T	p.L924L	ATACCTGCCCTCC	.	95.0	4.0	71.0	0.0	.	.	.	.	.
DNAH5	1767	hgsc.bcm.edu	37	5	13820597	13820597	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DNAH5	NM_001369	exon41	c.T6699C	p.A2233A	TAAACCAGCTTCT	.	116.0	26.0	76.0	0.0	.	.	.	.	.
ZNF141	7700	hgsc.bcm.edu	37	4	366775	366775	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF141	NM_003441	exon4	c.T549A	p.F183L	GAAGTTTTCACAC	.	85.0	20.0	64.0	0.0	.	.	.	.	.
SPECC1	92521	hgsc.bcm.edu	37	17	20109082	20109082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SPECC1	NM_001033553	exon4	c.A1720G	p.T574A	GAGCAGACGGCAG	.	66.0	21.0	63.0	0.0	.	.	.	.	.
NETO2	81831	hgsc.bcm.edu	37	16	47117548	47117548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	NETO2	NM_018092	exon9	c.G1162C	p.G388R	GGAACCCGGTTTT	.	57.0	23.0	83.0	0.0	.	.	.	.	.
PAX4	5078	hgsc.bcm.edu	37	7	127255087	127255087	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PAX4	NM_006193	exon2	c.A183G	p.P61P	GCCCTTTGGCTCC	.	86.0	6.0	70.0	0.0	.	.	.	.	.
KCNK16	83795	hgsc.bcm.edu	37	6	39285579	39285579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	KCNK16	NM_001135106	exon3	c.C478A	p.R160S	TGGGACGGTCCTC	.	103.0	30.0	66.0	0.0	.	.	.	.	.
ZNF175	7728	hgsc.bcm.edu	37	19	52090484	52090484	+	Silent	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF175	NM_007147	exon5	c.T900A	p.I300I	GAGAATTCATAGT	.	131.0	33.0	102.0	0.0	.	.	.	.	.
ARL5A	26225	hgsc.bcm.edu	37	2	152670806	152670806	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ARL5A	NM_012097	exon3	c.A132G	p.T44T	AGGAGATGTATGT	.	196.0	48.0	195.0	0.0	.	.	.	.	.
ADRB2	154	hgsc.bcm.edu	37	5	148207094	148207094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ADRB2	NM_000024	exon1	c.G700C	p.D234H	AAGATTGACAAAT	.	106.0	40.0	80.0	0.0	.	.	.	.	.
SCN5A	6331	hgsc.bcm.edu	37	3	38645342	38645342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SCN5A	NM_001160160	exon12	c.G1751A	p.G584D	GCGTGGCCAGGAG	.	64.0	13.0	48.0	0.0	.	.	.	.	.
PFKFB1	5207	hgsc.bcm.edu	37	X	54989780	54989780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	PFKFB1	NM_001271804	exon2	c.G133A	p.V45M	TGATCACCATTGT	.	159.0	50.0	172.0	0.0	.	.	.	.	.
USP1	7398	hgsc.bcm.edu	37	1	62913095	62913095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	USP1	NM_001017415	exon7	c.A1333G	p.S445G	TGTGAAAGTTTAA	.	103.0	9.0	94.0	0.0	.	.	.	.	.
FIZ1	84922	hgsc.bcm.edu	37	19	56104976	56104976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FIZ1	NM_032836	exon3	c.G331A	p.V111I	CGCAGACCAGGCA	.	127.0	27.0	108.0	0.0	.	.	.	.	.
CACNG2	10369	hgsc.bcm.edu	37	22	36960731	36960731	+	Silent	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	CACNG2	NM_006078	exon4	c.C639T	p.R213R	CGTGGCGCGGGCC	.	22.0	10.0	20.0	0.0	.	.	.	.	.
BMP1	649	hgsc.bcm.edu	37	8	22052004	22052004	+	Silent	SNP	G	G	A	rs199778498		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	BMP1	NM_001199	exon11	c.G1344A	p.S448S	TCAATCGCCCAAC	.	120.0	51.0	131.0	0.0	G|0.999;A|0.000	.	.	.	.
ATP8A1	10396	hgsc.bcm.edu	37	4	42553255	42553255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ATP8A1	NM_006095	exon18	c.T1562C	p.V521A	GTGAAAACAAAAT	.	152.0	41.0	147.0	0.0	.	.	.	.	.
RARB	5915	hgsc.bcm.edu	37	3	25622157	25622157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RARB	NM_000965	exon5	c.G730T	p.G244C	TTCACTGGCTTGA	.	100.0	4.0	92.0	0.0	.	.	.	.	.
FLNA	2316	hgsc.bcm.edu	37	X	153586830	153586830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	FLNA	NM_001456	exon27	c.T4581A	p.D1527E	CTCTTCATCTCCA	.	164.0	29.0	154.0	0.0	.	.	.	.	.
DECR1	1666	hgsc.bcm.edu	37	8	91031397	91031397	+	Silent	SNP	T	T	C	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	DECR1	NM_001359	exon4	c.T414C	p.P138P	ACATCCTAATGTA	.	106.0	37.0	78.0	0.0	.	.	.	.	.
LAMP5	24141	hgsc.bcm.edu	37	20	9510307	9510307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	.	NM_012261	exon6	c.A683G	p.D228G	CAGTGGATGAGCG	.	153.0	25.0	105.0	0.0	.	.	.	.	.
SBNO1	55206	hgsc.bcm.edu	37	12	123782650	123782650	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	SBNO1	NM_001167856	exon30	c.A3914T	p.Y1305F	AATACATAATATG	.	138.0	42.0	100.0	0.0	.	.	.	.	.
RGS22	26166	hgsc.bcm.edu	37	8	100994297	100994297	+	Silent	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	RGS22	NM_015668	exon22	c.T3228C	p.I1076I	AGTTGTAATCTTC	.	95.0	31.0	83.0	0.0	.	.	.	.	.
ZNF441	126068	hgsc.bcm.edu	37	19	11892231	11892231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	ZNF441	NM_152355	exon4	c.A1592G	p.Y531C	GACCCTATAAGTG	.	42.0	10.0	38.0	0.0	.	.	.	.	.
TLE1	7088	hgsc.bcm.edu	37	9	84208092	84208092	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A495-01A-11D-A25V-10	TCGA-FV-A495-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	84fe77b4-f6cc-49bf-a6b9-1621ec9394f8	88a0f90d-e075-45da-b4bf-8dfc9fd6b6a8	.	TLE1	NM_005077	exon15	c.C1429T	p.Q477X	TGATCTGGCGAGC	.	154.0	56.0	129.0	0.0	.	.	.	.	.
