Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
LAMTOR5	10542	hgsc.bcm.edu	hg19	1	110950487	110950487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_006402	exon1	c.T2C	p.M1T	GGCTCCATGGCGG	.	132.0	28.0	137.0	0.0	.	.	.	.	Atlas-SNP
SPAG17	200162	hgsc.bcm.edu	hg19	1	118629516	118629516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	SPAG17,colon,carcinoma,0,1	SPAG17	NM_206996	exon11	c.G1475T	p.C492F	GAGAGACAGAGTG	.	125.0	25.0	177.0	0.0	.	263	.	.	Atlas-SNP
TARS2	80222	hgsc.bcm.edu	hg19	1	150461451	150461451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TARS2	NM_001271896	exon3	c.C275G	p.A92G	CACTGGCAGATAC	.	101.0	17.0	72.0	0.0	.	91	.	.	Atlas-SNP
CRNN	49860	hgsc.bcm.edu	hg19	1	152382192	152382192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CRNN	NM_016190	exon3	c.G1366C	p.D456H	CCTGGTCCAGCCT	.	321.0	33.0	225.0	0.0	.	78	.	.	Atlas-SNP
ARHGEF2	9181	hgsc.bcm.edu	hg19	1	155935533	155935533	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARHGEF2	NM_001162383	exon5	c.C359G	p.P120R	GAGCTTGGCCGCT	.	75.0	5.0	23.0	0.0	.	81	.	.	Atlas-SNP
C1orf110	339512	hgsc.bcm.edu	hg19	1	162824806	162824806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C1orf110	NM_178550	exon4	c.G658T	p.G220W	TGTTCCCATCTGG	.	258.0	28.0	247.0	0.0	.	22	.	.	Atlas-SNP
PKP1	5317	hgsc.bcm.edu	hg19	1	201291111	201291111	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PKP1	NM_000299	exon9	c.G1416A	p.V472V	GTCTGTGGAAAAC	.	113.0	18.0	119.0	0.0	.	127	.	.	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	hg19	1	231858293	231858293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DISC1	NM_001164550	exon5	c.A1252G	p.N418D	GGAACCAATTGCT	.	125.0	12.0	121.0	0.0	.	207	.	.	Atlas-SNP
LHCGR	3973	hgsc.bcm.edu	hg19	2	48925801	48925801	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LHCGR	NM_000233	exon9	c.G819A	p.L273L	GTAAGTCAACGTG	.	64.0	5.0	74.0	0.0	.	154	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216249663	216249663	+	Missense_Mutation	SNP	G	G	T	rs202245868	by1000genomes;alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	FN1	NM_212482	exon29	c.C4649A	p.A1550E	GGGGTCGCAGCAA	.	348.0	42.0	377.0	0.0	.	521	.	G|1.000;A|0.000	Atlas-SNP
CAND2	23066	hgsc.bcm.edu	hg19	3	12859283	12859283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CAND2	NM_001162499	exon10	c.G2852T	p.G951V	AGGAGGGCACCCG	.	68.0	10.0	90.0	0.0	.	138	.	.	Atlas-SNP
SACM1L	22908	hgsc.bcm.edu	hg19	3	45754687	45754687	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SACM1L	NM_014016	exon6	c.A542T	p.E181V	AGCCAGAGGTAAT	.	18.0	7.0	21.0	0.0	.	38	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108127246	108127246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MYH15	NM_014981	exon33	c.A4561C	p.I1521L	TAGAAATCTCTTC	.	108.0	25.0	88.0	0.0	.	223	.	.	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57164398	57164398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIAA1211	NM_020722	exon4	c.G3A	p.M1I	TTCTATGGGAACC	.	64.0	12.0	84.0	0.0	.	178	.	.	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57181429	57181429	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIAA1211	NM_020722	exon8	c.G1761A	p.S587S	ACCGTCGTCCCTG	.	32.0	14.0	24.0	0.0	.	178	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62599267	62599267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LPHN3	NM_015236	exon5	c.G1190T	p.R397I	ATAGTAGATCAGG	.	113.0	13.0	142.0	0.0	.	800	.	.	Atlas-SNP
HPSE	10855	hgsc.bcm.edu	hg19	4	84222134	84222134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	HPSE	NM_001098540	exon11	c.G1451A	p.G484E	TGAGGTCCCAAAG	.	70.0	15.0	88.0	0.0	.	55	.	.	Atlas-SNP
TACR3	6870	hgsc.bcm.edu	hg19	4	104511152	104511152	+	Splice_Site	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TACR3	NM_001059	exon6	c.1086-1G>C	.	CGAAATCTGAGGA	.	77.0	14.0	105.0	0.0	.	102	.	.	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	hg19	5	37176032	37176032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C5orf42	NM_023073	exon31	c.A5957G	p.D1986G	CTCGTATCTACTT	.	141.0	21.0	82.0	0.0	.	422	.	.	Atlas-SNP
TNPO1	3842	hgsc.bcm.edu	hg19	5	72144312	72144312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TNPO1	NM_002270	exon2	c.G116T	p.R39I	TCCAGAGAACCGT	.	60.0	4.0	49.0	0.0	.	90	.	.	Atlas-SNP
PCDHGA5	56110	hgsc.bcm.edu	hg19	5	140745937	140745937	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PCDHGA5	NM_032054	exon1	c.C2040A	p.T680T	CAAGACCCCCATT	.	191.0	40.0	174.0	0.0	.	215	.	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117113958	117113958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GPRC6A	NM_148963	exon6	c.A2128G	p.T710A	TGCAAGTGAAGAT	.	103.0	15.0	110.0	0.0	.	152	.	.	Atlas-SNP
THEMIS	387357	hgsc.bcm.edu	hg19	6	128135050	128135050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	THEMIS,NS,carcinoma,0,1	THEMIS	NM_001010923	exon4	c.C736A	p.P246T	GACTGGGGAGGAT	.	63.0	16.0	80.0	0.0	.	168	.	.	Atlas-SNP
THEMIS	387357	hgsc.bcm.edu	hg19	6	128135051	128135051	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	THEMIS	NM_001010923	exon4	c.C735A	p.L245L	ACTGGGGAGGATG	.	63.0	16.0	79.0	0.0	.	168	.	.	Atlas-SNP
MRPL32	64983	hgsc.bcm.edu	hg19	7	42976921	42976921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MRPL32	NM_031903	exon3	c.A313G	p.N105D	TTAAAGAACAACA	.	251.0	67.0	167.0	0.0	.	25	.	.	Atlas-SNP
TOX	9760	hgsc.bcm.edu	hg19	8	59750851	59750851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TOX	NM_014729	exon5	c.G713A	p.R238Q	GCAGGCCGCTTCT	.	37.0	5.0	22.0	0.0	.	83	.	.	Atlas-SNP
RALYL	138046	hgsc.bcm.edu	hg19	8	85799965	85799965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	RALYL	NM_001100391	exon8	c.C851T	p.T284I	AGATGACAGATGG	.	278.0	18.0	135.0	0.0	.	123	.	.	Atlas-SNP
TMEM2	23670	hgsc.bcm.edu	hg19	9	74355033	74355033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TMEM2	NM_001135820	exon5	c.T1150C	p.Y384H	CAGTATAAAATTC	.	85.0	21.0	88.0	0.0	.	112	.	.	Atlas-SNP
CEP78	84131	hgsc.bcm.edu	hg19	9	80861605	80861605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CEP78	NM_001098802	exon6	c.G799T	p.G267C	CAGTGCGGCCTCA	.	76.0	4.0	64.0	0.0	.	79	.	.	Atlas-SNP
GALNT12	79695	hgsc.bcm.edu	hg19	9	101608380	101608380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GALNT12	NM_024642	exon9	c.A1580G	p.E527G	CCCCAGAGAATCA	.	252.0	44.0	257.0	0.0	.	37	.	.	Atlas-SNP
TLR4	7099	hgsc.bcm.edu	hg19	9	120475751	120475751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TLR4	NM_138554	exon3	c.C1345T	p.L449F	AGAAACCTCATTT	.	83.0	11.0	123.0	0.0	.	220	.	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134363453	134363453	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PRRC2B	NM_013318	exon27	c.C6195T	p.A2065A	GGGTGCCTCCCAG	.	113.0	14.0	108.0	0.0	.	266	.	.	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	hg19	10	37442511	37442511	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ANKRD30A	NM_052997	exon13	c.G1551A	p.E517E	CTGTGAGACTGTT	.	900.0	66.0	886.0	0.0	.	448	.	.	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	hg19	10	63851583	63851583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARID5B	NM_032199	exon10	c.C2361A	p.S787R	CTGCAGCTTCTCC	.	96.0	16.0	98.0	0.0	.	125	.	.	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	hg19	10	86001094	86001094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LRIT1	NM_015613	exon1	c.G102T	p.M34I	ATCACCCATGATA	.	181.0	70.0	153.0	0.0	.	73	.	.	Atlas-SNP
CHUK	1147	hgsc.bcm.edu	hg19	10	101953098	101953098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CHUK	NM_001278	exon19	c.G2065A	p.E689K	CATGTTCTGCTGA	.	119.0	24.0	115.0	0.0	.	71	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6650989	6650989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DCHS1	NM_003737	exon11	c.A4949G	p.Q1650R	TGCTGCTGGAAAG	.	66.0	9.0	58.0	0.0	.	277	.	.	Atlas-SNP
SBF2	81846	hgsc.bcm.edu	hg19	11	9829584	9829584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SBF2	NM_030962	exon32	c.C4406A	p.A1469D	ACTGGAGCAAAAC	.	102.0	5.0	96.0	0.0	.	146	.	.	Atlas-SNP
TEAD1	7003	hgsc.bcm.edu	hg19	11	12958680	12958680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TEAD1	NM_021961	exon13	c.G1192A	p.E398K	ACACAAGAAACTC	.	152.0	23.0	160.0	0.0	.	40	.	.	Atlas-SNP
GLYATL1	92292	hgsc.bcm.edu	hg19	11	58722261	58722261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GLYATL1	NM_080661	exon5	c.G298A	p.D100N	GACATGGATTCAT	.	150.0	35.0	225.0	0.0	.	89	.	.	Atlas-SNP
SLC35F2	54733	hgsc.bcm.edu	hg19	11	107663412	107663412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SLC35F2	NM_017515	exon8	c.A1054G	p.S352G	CAATGCTGGTGAC	.	79.0	20.0	120.0	0.0	.	29	.	.	Atlas-SNP
KLRC4-KLRK1	0	hgsc.bcm.edu	hg19	12	10531200	10531200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001199805	exon11	c.A382G	p.M128V	GAGACATACAAGA	.	60.0	23.0	93.0	0.0	.	.	.	.	Atlas-SNP
MON2	23041	hgsc.bcm.edu	hg19	12	62926222	62926222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	MON2,NS,carcinoma,0,1	MON2	NM_015026	exon12	c.G1405T	p.E469X	AGCTTAGAAATGT	.	124.0	19.0	122.0	0.0	.	160	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122252796	122252796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SETD1B	NM_015048	exon6	c.C2675T	p.A892V	TCCGGGCCTTTGA	.	119.0	30.0	130.0	0.0	.	105	.	.	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	hg19	13	32914479	32914479	+	Missense_Mutation	SNP	C	C	G	rs80358834	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	BRCA2	NM_000059	exon11	c.C5987G	p.A1996G	AAAACGCAAGACA	.	56.0	22.0	66.0	0.0	.	812	.	.	Atlas-SNP
PCDH17	27253	hgsc.bcm.edu	hg19	13	58206732	58206732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PCDH17	NM_001040429	exon1	c.C52A	p.L18I	CTCACTCTCAAGA	.	98.0	23.0	103.0	0.0	.	304	.	.	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76381696	76381696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LMO7	NM_015842	exon7	c.C578A	p.T193N	ATCCCACTTCTGG	.	84.0	39.0	86.0	0.0	.	334	.	.	Atlas-SNP
UBAC2	337867	hgsc.bcm.edu	hg19	13	100020041	100020041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	UBAC2	NM_001144072	exon8	c.G808A	p.G270R	TTTTAGGGAGGAA	.	142.0	45.0	153.0	0.0	.	23	.	.	Atlas-SNP
EXOC3L4	91828	hgsc.bcm.edu	hg19	14	103568956	103568956	+	Missense_Mutation	SNP	C	C	T	rs371500721		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	EXOC3L4	NM_001077594	exon2	c.C896T	p.P299L	TGCAGCCCGCGTA	.	5.0	4.0	2.0	0.0	.	35	.	.	Atlas-SNP
SHCBP1	79801	hgsc.bcm.edu	hg19	16	46651615	46651615	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SHCBP1	NM_024745	exon3	c.G318A	p.L106L	CTTCTCCAAGAAC	.	99.0	4.0	111.0	0.0	.	54	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	TP53_ENST00000455263,NS,malignant_melanoma,0,1	TP53	NM_000546	exon8	c.G856A	p.E286K	TCTCTTCCTCTGT	.	107.0	66.0	91.0	1.0	.	33396	.	.	Atlas-SNP
VEZF1	7716	hgsc.bcm.edu	hg19	17	56056622	56056622	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	VEZF1	NM_007146	exon5	c.G1029A	p.Q343Q	CTGCTGCTGCTGC	.	224.0	34.0	130.0	0.0	.	50	.	.	Atlas-SNP
STRADA	92335	hgsc.bcm.edu	hg19	17	61791458	61791458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	STRADA,NS,carcinoma,0,1	STRADA	NM_001003787	exon5	c.C134T	p.A45V	GAGCTCGCATCAT	.	132.0	64.0	106.0	1.0	.	27	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3083787	3083787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MYOM1	NM_003803	exon33	c.A4484T	p.N1495I	ACTTACTTGTGGG	.	63.0	9.0	41.0	0.0	.	192	.	.	Atlas-SNP
TXNDC2	84203	hgsc.bcm.edu	hg19	18	9887134	9887134	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TXNDC2	NM_001098529	exon2	c.A658T	p.K220X	CAGCCCAAGCTGG	.	143.0	7.0	142.0	0.0	.	168	.	.	Atlas-SNP
SLC14A1	6563	hgsc.bcm.edu	hg19	18	43310324	43310324	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SLC14A1	NM_001146037	exon2	c.C207A	p.P69P	CAGCCCCACTATG	.	165.0	12.0	104.0	0.0	.	84	.	.	Atlas-SNP
ARID3A	1820	hgsc.bcm.edu	hg19	19	932472	932472	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARID3A	NM_005224	exon3	c.G423C	p.E141D	TGAGGAGGAGGAG	.	59.0	13.0	53.0	0.0	.	35	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9060557	9060557	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MUC16	NM_024690	exon3	c.C26889T	p.S8963S	CACTTTGGATGGC	.	305.0	65.0	308.0	0.0	.	4315	.	.	Atlas-SNP
ZNF791	163049	hgsc.bcm.edu	hg19	19	12739344	12739344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF791	NM_153358	exon4	c.G1001A	p.G334E	AATGTGGGAAATC	.	52.0	20.0	38.0	0.0	.	53	.	.	Atlas-SNP
LPHN1	22859	hgsc.bcm.edu	hg19	19	14274081	14274081	+	Missense_Mutation	SNP	G	G	A	rs369670781		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LPHN1	NM_001008701	exon6	c.C547T	p.R183C	CCGTGCGGTAGGG	.	160.0	38.0	134.0	0.0	.	107	.	.	Atlas-SNP
CLPTM1	1209	hgsc.bcm.edu	hg19	19	45488541	45488541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CLPTM1	NM_001294	exon6	c.G652A	p.A218T	ACAGAAGCGGACC	.	100.0	27.0	115.0	0.0	.	109	.	.	Atlas-SNP
ERVV-1	147664	hgsc.bcm.edu	hg19	19	53518514	53518514	+	Missense_Mutation	SNP	C	C	T	rs56636870		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ERVV-1	NM_152473	exon1	c.C1171T	p.L391F	GATTACCTCTTAG	.	4.0	4.0	0.0	0.0	.	1	.	.	Atlas-SNP
C20orf196	149840	hgsc.bcm.edu	hg19	20	5843711	5843711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C20orf196	NM_152504	exon3	c.G220A	p.A74T	TGGACCGCTGAGA	.	90.0	9.0	79.0	0.0	.	17	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	40980875	40980875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	PTPRT,right_upper_lobe,carcinoma,0,1	PTPRT	NM_007050	exon10	c.C1611G	p.S537R	CCTCTGGCTCGAG	.	86.0	15.0	101.0	0.0	.	372	.	.	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	hg19	22	21153477	21153477	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PI4KA	NM_058004	exon16	c.C1908T	p.P636P	CAGAATGGGCTCC	.	64.0	17.0	60.0	0.0	.	313	.	.	Atlas-SNP
ZNF280B	140883	hgsc.bcm.edu	hg19	22	22843682	22843682	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF280B	NM_080764	exon4	c.G42A	p.Q14Q	GTTCTTCTGTGGT	.	293.0	45.0	316.0	0.0	.	67	.	.	Atlas-SNP
OTUD5	55593	hgsc.bcm.edu	hg19	X	48814825	48814825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OTUD5	NM_001136157	exon1	c.T8C	p.I3T	GGGAGTATAGTCA	.	55.0	43.0	47.0	0.0	.	66	.	.	Atlas-SNP
ARHGEF6	9459	hgsc.bcm.edu	hg19	X	135863020	135863020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARHGEF6	NM_004840	exon1	c.G22A	p.V8M	ATGTCACGATTTG	.	36.0	25.0	41.0	0.0	.	111	.	.	Atlas-SNP
TRAM1L1	133022	hgsc.bcm.edu	hg19	4	118005773	118005789	+	Frame_Shift_Del	DEL	CAAGATAAACACAATGG	CAAGATAAACACAATGG	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	CAAGATAAACACAATGG	CAAGATAAACACAATGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TRAM1L1	NM_152402	exon1	c.762_778del	p.254_260del	.	.	59.0	14.0	115.0	0.0	.	55	.	.	Atlas-Indel,Pindel
METTL21C	196541	hgsc.bcm.edu	hg19	13	103339396	103339396	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	METTL21C	NM_001010977	exon3	c.295delT	p.C99fs	.	.	64.0	10.0	74.0	0.0	.	23	.	.	Atlas-INDEL
CACNA1E	777	hgsc.bcm.edu	hg19	1	181725193	181725193	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CACNA1E	NM_000721	exon29	c.4090delA	p.T1364fs	.	.	162.0	62.0	149.0	0.0	.	778	.	.	Atlas-Indel,Pindel
ZNF512B	57473	hgsc.bcm.edu	hg19	20	62597492	62597583	+	Frame_Shift_Del	DEL	GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT	GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT	GACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCCGACCTGGGACGAGCCCCCATACCTTTTCTTACCACTGTTCCTCCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF512B	NM_020713	exon5	c.1012_1034del	p.338_345del	.	.	330.0	24.0	279.0	0.0	.	72	.	.	Pindel
