Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIF1B	23095	hgsc.bcm.edu	hg19	1	10381913	10381913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF1B	NM_015074	exon22	c.A2218C	p.K740Q	AAAAAGAAGGTAT	.	80.0	19.0	63.0	0.0	.	242	.	.	Atlas-SNP
ST6GALNAC5	81849	hgsc.bcm.edu	hg19	1	77528691	77528691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ST6GALNAC5	NM_030965	exon5	c.T811C	p.Y271H	TATCATTATTATG	.	117.0	12.0	89.0	0.0	.	59	.	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	hg19	1	79356902	79356902	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ELTD1	NM_022159	exon16	c.2011-1G>A	.	TTGAATCTAAAAA	.	285.0	40.0	181.0	0.0	.	143	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103343720	103343720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL11A1	NM_080629	exon67	c.C5312A	p.S1771Y	TTTCTGGACTGTA	.	103.0	14.0	48.0	0.0	.	972	.	.	Atlas-SNP
ELK4	2005	hgsc.bcm.edu	hg19	1	205588972	205588972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ELK4	NM_021795	exon3	c.G1202A	p.C401Y	GTCACACATAACC	.	103.0	17.0	82.0	0.0	.	45	.	.	Atlas-SNP
PGBD2	267002	hgsc.bcm.edu	hg19	1	249211485	249211485	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGBD2	NM_170725	exon3	c.C702T	p.N234N	TAACAACGAACTT	.	42.0	8.0	37.0	0.0	.	103	.	.	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109347859	109347859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RANBP2	NM_006267	exon4	c.G334T	p.G112X	ACTGATGGAAGAG	.	841.0	110.0	858.0	0.0	.	488	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111996688	111996688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_183061	exon5	c.C338T	p.P113L	AAGCCGGGAATTG	.	227.0	28.0	126.0	0.0	.	.	.	.	Atlas-SNP
GCNT2	2651	hgsc.bcm.edu	hg19	6	10586875	10586875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GCNT2	NM_145655	exon1	c.G653T	p.G218V	CCCCAGGGGTGCT	.	88.0	16.0	91.0	0.0	.	123	.	.	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	hg19	6	74227628	74227628	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EEF1A1	NM_001402	exon8	c.A1294T	p.T432S	CAACTGTCTGTCT	.	113.0	18.0	84.0	0.0	.	56	.	.	Atlas-SNP
NUP205	23165	hgsc.bcm.edu	hg19	7	135330244	135330244	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUP205	NM_015135	exon41	c.T5712G	p.L1904L	TATTCTTTGGCGC	.	184.0	23.0	125.0	0.0	.	198	.	.	Atlas-SNP
DPP6	1804	hgsc.bcm.edu	hg19	7	154645528	154645528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DPP6	NM_130797	exon17	c.G1705T	p.D569Y	ACAACAGATAAGA	.	154.0	41.0	145.0	0.0	.	383	.	.	Atlas-SNP
PTPDC1	138639	hgsc.bcm.edu	hg19	9	96870207	96870207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPDC1	NM_001253829	exon9	c.G2408A	p.G803D	AAGATGGCCCTAA	.	131.0	11.0	78.0	0.0	.	134	.	.	Atlas-SNP
C9orf152	401546	hgsc.bcm.edu	hg19	9	112963511	112963511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C9orf152	NM_001012993	exon2	c.G437A	p.G146E	TCAGATCCCACAA	.	106.0	18.0	141.0	0.0	.	20	.	.	Atlas-SNP
OR4A5	81318	hgsc.bcm.edu	hg19	11	51411592	51411592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR4A5	NM_001005272	exon1	c.G804T	p.M268I	CACAGTCATGAAC	.	87.0	16.0	71.0	0.0	.	116	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105623945	105623945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRIA4	NM_001077244	exon4	c.G486T	p.R162S	AGACAGGGGTAAG	.	59.0	10.0	58.0	0.0	.	380	.	.	Atlas-SNP
STYK1	55359	hgsc.bcm.edu	hg19	12	10775259	10775259	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STYK1	NM_018423	exon9	c.G945T	p.L315L	ATAGAGCAGGATC	.	132.0	15.0	89.0	0.0	.	55	.	.	Atlas-SNP
CAPS2	84698	hgsc.bcm.edu	hg19	12	75692559	75692559	+	Missense_Mutation	SNP	T	T	C	rs372993486		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAPS2	NM_032606	exon12	c.A1009G	p.T337A	CATTTGTTCTAGA	.	95.0	12.0	76.0	0.0	.	96	.	.	Atlas-SNP
OR4L1	122742	hgsc.bcm.edu	hg19	14	20528668	20528668	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR4L1	NM_001004717	exon1	c.C465T	p.H155H	TTTACACTCCATA	.	103.0	14.0	53.0	0.0	.	98	.	.	Atlas-SNP
TM4SF5	9032	hgsc.bcm.edu	hg19	17	4686278	4686278	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TM4SF5	NM_003963	exon4	c.C525T	p.I175I	TGGGATCCAGCTG	.	73.0	20.0	106.0	0.0	.	26	.	.	Atlas-SNP
DSC2	1824	hgsc.bcm.edu	hg19	18	28648117	28648117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DSC2	NM_024422	exon16	c.A2570G	p.Y857C	TAGTTATATGTCA	.	133.0	30.0	93.0	0.0	.	168	.	.	Atlas-SNP
KDM5D	8284	hgsc.bcm.edu	hg19	Y	21897301	21897301	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KDM5D	NM_001146705	exon8	c.G870A	p.L290L	TAGGCTCAAGTGC	.	74.0	21.0	39.0	0.0	.	40	.	.	Atlas-SNP
CSNK1A1L	122011	hgsc.bcm.edu	hg19	13	37678905	37678906	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CSNK1A1L	NM_145203	exon1	c.489_490insA	p.K163fs	.	.	286.0	43.0	323.0	0.0	.	69	.	.	Atlas-INDEL
KBTBD12	166348	hgsc.bcm.edu	hg19	3	127642837	127642838	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KBTBD12	NM_207335	exon1	c.933_934insTCA	p.I311delinsIS	.	.	176.0	24.0	127.0	0.0	.	41	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7577531	7577531	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	TP53_ENST00000455263,NS,malignant_melanoma,+1,4	TP53	NM_000546	exon7	c.751delA	p.I251fs	.	.	352.0	91.0	106.0	0.0	.	33396	.	.	Atlas-Indel,Pindel
PMS1	5378	hgsc.bcm.edu	hg19	2	190719433	190719433	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PMS1	NM_001128144	exon9	c.1434delT	p.S478fs	.	.	130.0	14.0	87.0	0.0	.	78	.	.	Atlas-Indel,Pindel
MAP2K4	6416	hgsc.bcm.edu	hg19	17	11998923	11998923	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP2K4	NM_003010	exon4	c.424delC	p.Q142fs	.	.	82.0	13.0	78.0	0.0	.	176	.	.	Atlas-INDEL
GPR116	221395	hgsc.bcm.edu	hg19	6	46847716	46847716	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR116	NM_015234	exon9	c.876delG	p.V292fs	.	.	90.0	15.0	81.0	0.0	.	133	.	.	Atlas-INDEL
CHD9	80205	hgsc.bcm.edu	hg19	16	53340280	53340280	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHD9	NM_025134	exon32	c.6750delA	p.G2250fs	.	.	97.0	15.0	89.0	0.0	.	203	.	.	Atlas-Indel,Pindel
