Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HFE2	148738	hgsc.bcm.edu	hg19	1	145414811	145414811	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HFE2	NM_213653	exon2	c.C30T	p.P10P	TAGTCCCAGGTCC	.	80.0	22.0	60.0	0.0	.	48	.	.	Atlas-SNP
CKS1B	1163	hgsc.bcm.edu	hg19	1	154947279	154947279	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	CKS1B	NM_001826	exon1	c.C58T	p.R20X	GAGTATCGGTTAG	.	185.0	53.0	133.0	0.0	.	5	.	.	Atlas-SNP
IFI16	3428	hgsc.bcm.edu	hg19	1	158984635	158984635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	IFI16	NM_001206567	exon2	c.G165C	p.K55N	AGAAAAGTTCCGA	.	271.0	64.0	258.0	0.0	.	111	.	.	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	hg19	1	178420786	178420786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RASAL2	NM_170692	exon10	c.G1708A	p.D570N	CTGATAGACCATC	.	54.0	19.0	66.0	0.0	.	334	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21235442	21235442	+	Nonsense_Mutation	SNP	G	G	T	rs200708197	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	APOB,NS,carcinoma,0,2	APOB	NM_000384	exon26	c.C4298A	p.S1433X	ATATTCGAATCTA	.	73.0	20.0	73.0	0.0	.	761	.	G|0.999;A|0.001	Atlas-SNP
MARCO	8685	hgsc.bcm.edu	hg19	2	119739211	119739211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MARCO	NM_006770	exon10	c.C880T	p.P294S	GGTTTTCCTGGAG	.	89.0	27.0	84.0	0.0	.	120	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179407524	179407524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TTN	NM_001267550	exon348	c.G97057A	p.V32353I	CTGTGACACGCTC	.	122.0	20.0	104.0	0.0	.	18412	.	.	Atlas-SNP
MLPH	79083	hgsc.bcm.edu	hg19	2	238434305	238434305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MLPH	NM_001042467	exon7	c.A737T	p.E246V	TGGAGGAGGCTGA	.	52.0	14.0	40.0	0.0	.	41	.	.	Atlas-SNP
UCN2	90226	hgsc.bcm.edu	hg19	3	48600437	48600437	+	Nonsense_Mutation	SNP	G	G	A	rs149022309	bycluster	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	UCN2	NM_033199	exon2	c.C121T	p.R41X	CAGGTCGGGGAGT	.	71.0	17.0	74.0	0.0	.	4	.	G|1.000;A|0.000	Atlas-SNP
RNF123	63891	hgsc.bcm.edu	hg19	3	49738928	49738928	+	Missense_Mutation	SNP	G	G	T	rs369164501	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RNF123	NM_022064	exon16	c.G1282T	p.D428Y	AGCTTCGACGTGC	.	37.0	12.0	32.0	0.0	.	100	.	.	Atlas-SNP
C4orf51	646603	hgsc.bcm.edu	hg19	4	146650321	146650321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	C4orf51	NM_001080531	exon4	c.G367T	p.A123S	TTATAGGCACATC	.	199.0	20.0	184.0	0.0	.	18	.	.	Atlas-SNP
DAB2	1601	hgsc.bcm.edu	hg19	5	39376177	39376177	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	DAB2	NM_001343	exon13	c.C2169A	p.S723S	TGGCAGGGAAACT	.	77.0	34.0	66.0	0.0	.	124	.	.	Atlas-SNP
TMEM232	642987	hgsc.bcm.edu	hg19	5	109941886	109941886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TMEM232	NM_001039763	exon9	c.C1005A	p.S335R	CATAATGCTTGAA	.	143.0	22.0	129.0	0.0	.	57	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130841171	130841171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RAPGEF6	NM_001164387	exon10	c.T987A	p.S329R	TGGATGACTGATT	.	114.0	20.0	70.0	0.0	.	361	.	.	Atlas-SNP
GRXCR2	643226	hgsc.bcm.edu	hg19	5	145246178	145246178	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GRXCR2	NM_001080516	exon2	c.G450C	p.E150D	AGCCTCCTCTTCC	.	131.0	30.0	91.0	0.0	.	32	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65300537	65300537	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	EYS	NM_001142800	exon26	c.T5223C	p.D1741D	AGAACTATCACTT	.	125.0	21.0	128.0	0.0	.	527	.	.	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144783916	144783916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	UTRN	NM_007124	exon22	c.C2980T	p.Q994X	GATGTGCAAGGAA	.	86.0	22.0	81.0	0.0	.	327	.	.	Atlas-SNP
FSCN1	6624	hgsc.bcm.edu	hg19	7	5645021	5645021	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	FSCN1,caecum,carcinoma,0,1	FSCN1	NM_003088	exon5	c.C1398T	p.G466G	GGTGGGCGGGCGC	.	50.0	12.0	55.0	0.0	.	29	.	.	Atlas-SNP
METTL2B	55798	hgsc.bcm.edu	hg19	7	128119304	128119304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	METTL2B	NM_018396	exon3	c.G295A	p.E99K	TTTACCGAATTCC	.	250.0	41.0	238.0	0.0	.	34	.	.	Atlas-SNP
TRAM1	23471	hgsc.bcm.edu	hg19	8	71499196	71499196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TRAM1	NM_014294	exon8	c.A680G	p.Y227C	ACAAAATAATGTA	.	114.0	22.0	102.0	0.0	.	33	.	.	Atlas-SNP
ALDOB	229	hgsc.bcm.edu	hg19	9	104192169	104192169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	ALDOB	NM_000035	exon3	c.C192A	p.F64L	CACAGAGAAGAGG	.	134.0	33.0	126.0	0.0	.	69	.	.	Atlas-SNP
HERC4	26091	hgsc.bcm.edu	hg19	10	69726472	69726472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	HERC4	NM_022079	exon16	c.A1894G	p.I632V	AGTTGATATAATC	.	100.0	17.0	120.0	0.0	.	78	.	.	Atlas-SNP
LRMP	4033	hgsc.bcm.edu	hg19	12	25232338	25232338	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	LRMP,NS,carcinoma,0,1	LRMP	NM_001204126	exon6	c.T78A	p.Y26X	GGAATATTCCTCA	.	123.0	22.0	109.0	0.0	.	51	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	hg19	12	32135645	32135645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_018169	exon4	c.G1756A	p.A586T	CTTCTCGCTTTGC	.	51.0	9.0	51.0	0.0	.	.	.	.	Atlas-SNP
MAPKAPK5	8550	hgsc.bcm.edu	hg19	12	112308091	112308091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	MAPKAPK5	NM_139078	exon6	c.G410A	p.R137Q	CTCTGCGGCACTG	.	151.0	27.0	149.0	0.0	.	56	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124835268	124835268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NCOR2	NM_006312	exon30	c.G3709A	p.V1237I	ACAGGACGTCAGC	.	32.0	10.0	14.0	0.0	.	475	.	.	Atlas-SNP
ZIC5	85416	hgsc.bcm.edu	hg19	13	100617641	100617641	+	Missense_Mutation	SNP	G	G	A	rs146570814	bycluster	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	ZIC5,NS,carcinoma,0,2	ZIC5	NM_033132	exon2	c.C1982T	p.T661M	TGTATCGTCCGCA	.	63.0	13.0	60.0	0.0	.	38	.	G|1.000;A|0.000	Atlas-SNP
SEC23A	10484	hgsc.bcm.edu	hg19	14	39524374	39524374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SEC23A	NM_006364	exon14	c.G1632T	p.R544S	CAGCCACCTAAGC	.	96.0	21.0	83.0	0.0	.	73	.	.	Atlas-SNP
NEMF	9147	hgsc.bcm.edu	hg19	14	50269987	50269987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	NEMF	NM_004713	exon20	c.A1883G	p.E628G	AAATATTCTCCAG	.	105.0	32.0	105.0	0.0	.	79	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24802369	24802369	+	Silent	SNP	G	G	A	rs113829020	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	TNRC6A	NM_014494	exon6	c.G2406A	p.G802G	CCAGGGGGGGTGG	.	24.0	12.0	27.0	0.0	.	171	.	G|0.997;C|0.003	Atlas-SNP
RAB34	83871	hgsc.bcm.edu	hg19	17	27041897	27041897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	RAB34	NM_001144943	exon10	c.T797C	p.F266S	CGGAAGAAGAATT	.	41.0	12.0	26.0	0.0	.	44	.	.	Atlas-SNP
WDR7	23335	hgsc.bcm.edu	hg19	18	54362254	54362254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	WDR7	NM_052834	exon11	c.A1182G	p.I394M	AATTATAGATCAG	.	130.0	29.0	130.0	0.0	.	166	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56029520	56029520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	SSC5D	NM_001144950	exon14	c.C3877T	p.P1293S	ACAACCCCTCACC	.	245.0	33.0	287.0	0.0	.	65	.	.	Atlas-SNP
FLRT3	23767	hgsc.bcm.edu	hg19	20	14306475	14306475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	FLRT3	NM_013281	exon2	c.T1678A	p.S560T	TCCTTGAGAAGAG	.	154.0	31.0	145.0	0.0	.	67	.	.	Atlas-SNP
PASD1	139135	hgsc.bcm.edu	hg19	X	150839639	150839639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	PASD1	NM_173493	exon12	c.G1201T	p.A401S	CAGAATGCATTGG	.	109.0	21.0	94.0	0.0	.	286	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6951	6951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	ENST00000361624	exon1	c.G1048A	p.V350M	TTCACCGTAGGTG	.	205.0	179.0	391.0	0.0	.	.	.	.	Atlas-SNP
GSE1	23199	hgsc.bcm.edu	hg19	16	85689985	85689997	+	Frame_Shift_Del	DEL	GCGCGAGCGCGAG	GCGCGAGCGCGAG	-	rs3833833	alternate_allele	TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	GCGCGAGCGCGAG	GCGCGAGCGCGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	.	NM_014615	exon7	c.1025_1037del	p.342_346del	.	.	39.0	13.0	21.0	0.0	.	.	.	.	Atlas-INDEL
BEST1	7439	hgsc.bcm.edu	hg19	11	61723374	61723376	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	BEST1	NM_004183	exon4	c.431_433del	p.144_145del	.	.	35.0	13.0	24.0	0.0	.	85	.	.	Atlas-INDEL
REV1	51455	hgsc.bcm.edu	hg19	2	100019252	100019253	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	REV1	NM_016316	exon21	c.3396_3397del	p.1132_1133del	.	.	63.0	21.0	31.0	0.0	.	100	.	.	Atlas-Indel,Pindel
GBE1	2632	hgsc.bcm.edu	hg19	3	81548302	81548302	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25W-01A-11D-A16V-10	TCGA-G3-A25W-11A-12D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	36e1d9cc-32ec-4a0a-8fb1-c46f058a6fb8	fdc8e770-343e-4c4e-bc1d-99375ea94de4	.	GBE1	NM_000158	exon15	c.2012delC	p.S671fs	.	.	148.0	16.0	166.0	0.0	.	111	.	.	Pindel
