Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CHD5	26038	hgsc.bcm.edu	hg19	1	6196807	6196807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CHD5	NM_015557	exon16	c.T2555A	p.L852H	TTCTTGAGGCGGT	.	53.0	17.0	80.0	0.0	.	267	.	.	Atlas-SNP
UBAP2L	9898	hgsc.bcm.edu	hg19	1	154221748	154221748	+	Missense_Mutation	SNP	G	G	T	rs200980910	by1000genomes;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBAP2L	NM_001127320	exon12	c.G1048T	p.G350C	GATGTCGGTGAAG	.	231.0	13.0	170.0	0.0	.	197	.	G|1.000;A|0.000	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175048705	175048705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	TNN,caecum,carcinoma,0,1	TNN	NM_022093	exon3	c.G646A	p.V216M	CGCGGCGTGTGCC	.	54.0	26.0	55.0	0.0	.	297	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	180064893	180064893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CEP350	NM_014810	exon35	c.T8747C	p.V2916A	TGGCAGTCCCCCA	.	140.0	32.0	73.0	0.0	.	418	.	.	Atlas-SNP
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204438107	204438107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PIK3C2B	NM_002646	exon3	c.C824T	p.A275V	CTCCTGGCCACGG	.	67.0	22.0	50.0	0.0	.	142	.	.	Atlas-SNP
IKBKE	9641	hgsc.bcm.edu	hg19	1	206649567	206649567	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	IKBKE,NS,carcinoma,0,2	IKBKE	NM_001193322	exon6	c.C402T	p.R134R	GCATCGCGACATC	.	64.0	38.0	59.0	1.0	.	77	.	.	Atlas-SNP
RTN4	57142	hgsc.bcm.edu	hg19	2	55254616	55254616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RTN4	NM_020532	exon3	c.A619G	p.M207V	AGTCCATATTTTC	.	50.0	16.0	22.0	0.0	.	189	.	.	Atlas-SNP
RTN4	57142	hgsc.bcm.edu	hg19	2	55254618	55254618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RTN4	NM_020532	exon3	c.A617C	p.N206T	TCCATATTTTCTG	.	49.0	17.0	21.0	0.0	.	189	.	.	Atlas-SNP
DHRS9	10170	hgsc.bcm.edu	hg19	2	169938117	169938117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DHRS9	NM_005771	exon5	c.T26A	p.L9Q	GCCTCCTAATCCT	.	50.0	11.0	31.0	0.0	.	29	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179648462	179648462	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTN	NM_001267550	exon17	c.A2826G	p.P942P	AGTTGGTGGAGTA	.	161.0	76.0	96.0	0.0	.	18412	.	.	Atlas-SNP
SLC39A10	57181	hgsc.bcm.edu	hg19	2	196593015	196593015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC39A10	NM_020342	exon9	c.C2279A	p.T760K	ACATCACACTTTG	.	315.0	151.0	162.0	0.0	.	89	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215843664	215843664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA12	NM_173076	exon32	c.G4841A	p.G1614E	AGCTCTCCCCCAA	.	128.0	22.0	75.0	0.0	.	368	.	.	Atlas-SNP
SLC19A3	80704	hgsc.bcm.edu	hg19	2	228563990	228563990	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC19A3	NM_025243	exon3	c.G441T	p.T147T	GGCCAGCGTGACG	.	43.0	9.0	31.0	0.0	.	62	.	.	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	hg19	3	10290922	10290922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TATDN2	NM_014760	exon2	c.G38T	p.S13I	ACTGGAGCAGCAC	.	63.0	13.0	52.0	0.0	.	59	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41275047	41275047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CTNNB1	NM_001098209	exon9	c.C1213T	p.L405F	GGGACTCTTGTTC	.	63.0	18.0	56.0	0.0	.	4904	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52549455	52549455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STAB1	NM_015136	exon37	c.G3881T	p.S1294I	GGAAGAGCTGTGT	.	35.0	16.0	50.0	0.0	.	178	.	.	Atlas-SNP
C3orf67	200844	hgsc.bcm.edu	hg19	3	58855185	58855185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C3orf67	NM_198463	exon9	c.G509A	p.R170Q	CATGATCGGTTAT	.	154.0	46.0	100.0	0.0	.	45	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	97202883	97202883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPHA6	NM_001080448	exon10	c.T2180C	p.I727T	TTCGTATTGAGAG	.	93.0	39.0	85.0	0.0	.	439	.	.	Atlas-SNP
FAM193A	8603	hgsc.bcm.edu	hg19	4	2698242	2698242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM193A	NM_001256667	exon17	c.G2622T	p.L874F	TTTGTTGCAGTTT	.	190.0	54.0	163.0	0.0	.	103	.	.	Atlas-SNP
SLC30A9	10463	hgsc.bcm.edu	hg19	4	42065035	42065035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	SLC30A9,colon,carcinoma,-1,2	SLC30A9	NM_006345	exon11	c.C929T	p.S310L	TTTCTTCGCTAAT	.	411.0	17.0	246.0	0.0	.	58	.	.	Atlas-SNP
POLR2B	5431	hgsc.bcm.edu	hg19	4	57860856	57860856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POLR2B	NM_000938	exon5	c.A400G	p.K134E	GTCATTAAAGAAG	.	46.0	29.0	54.0	0.0	.	108	.	.	Atlas-SNP
CAPSL	133690	hgsc.bcm.edu	hg19	5	35910562	35910562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CAPSL	NM_144647	exon3	c.T221A	p.V74D	TCCATGACCACAG	.	115.0	36.0	94.0	0.0	.	68	.	.	Atlas-SNP
SLC35A4	113829	hgsc.bcm.edu	hg19	5	139947621	139947621	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC35A4	NM_080670	exon3	c.C867A	p.V289V	GGTGGTCAACGCC	.	61.0	23.0	52.0	0.0	.	25	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140563257	140563257	+	Missense_Mutation	SNP	T	T	A	rs377277959		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PCDHB16	NM_020957	exon1	c.T1123A	p.S375T	CCTGACTCCGGAA	.	59.0	26.0	77.0	0.0	.	159	.	.	Atlas-SNP
PGBD1	84547	hgsc.bcm.edu	hg19	6	28269056	28269056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PGBD1	NM_001184743	exon7	c.G1425T	p.R475S	TAGAAGGGAAATG	.	129.0	54.0	94.0	0.0	.	106	.	.	Atlas-SNP
TOR2A	27433	hgsc.bcm.edu	hg19	9	130494466	130494466	+	Missense_Mutation	SNP	G	G	A	rs370306195	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TOR2A	NM_001134430	exon4	c.C685T	p.R229C	GAGCACGCAGTGC	.	47.0	19.0	78.0	0.0	.	26	.	.	Atlas-SNP
ZNF248	57209	hgsc.bcm.edu	hg19	10	38121994	38121994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF248	NM_001267597	exon6	c.G289C	p.D97H	GGTCATCTTCATT	.	76.0	26.0	40.0	0.0	.	61	.	.	Atlas-SNP
DPYSL4	10570	hgsc.bcm.edu	hg19	10	134018356	134018356	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DPYSL4	NM_006426	exon14	c.T1641C	p.D547D	GGCTGATGACCAC	.	68.0	29.0	86.0	0.0	.	91	.	.	Atlas-SNP
USH1C	10083	hgsc.bcm.edu	hg19	11	17530990	17530990	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USH1C	NM_153676	exon18	c.T1926C	p.N642N	CACTGGATTGCCT	.	91.0	21.0	96.0	0.0	.	157	.	.	Atlas-SNP
TRAF6	7189	hgsc.bcm.edu	hg19	11	36516546	36516546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRAF6	NM_004620	exon5	c.A658G	p.T220A	GTATAGTATTGCA	.	354.0	123.0	197.0	0.0	.	56	.	.	Atlas-SNP
GYLTL1B	120071	hgsc.bcm.edu	hg19	11	45948313	45948313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GYLTL1B	NM_152312	exon10	c.C1216T	p.R406W	GAGTTCCGGCAGC	.	34.0	16.0	32.0	0.0	.	45	.	.	Atlas-SNP
OR4C3	256144	hgsc.bcm.edu	hg19	11	48347263	48347263	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR4C3	NM_001004702	exon1	c.G771A	p.G257G	AGATGGGAGATGC	.	206.0	21.0	183.0	0.0	.	75	.	.	Atlas-SNP
BTBD18	643376	hgsc.bcm.edu	hg19	11	57512438	57512438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BTBD18	NM_001145101	exon3	c.C1307A	p.S436Y	TCTGGGGAGTGGC	.	52.0	26.0	71.0	0.0	.	26	.	.	Atlas-SNP
KRTAP5-7	440050	hgsc.bcm.edu	hg19	11	71238415	71238415	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KRTAP5-7	NM_001012503	exon1	c.C69A	p.G23G	TGGGGGCTGTGGC	.	131.0	12.0	107.0	0.0	.	23	.	.	Atlas-SNP
BRAP	8315	hgsc.bcm.edu	hg19	12	112093435	112093435	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BRAP	NM_006768	exon10	c.C1246G	p.L416V	ATTCCAGCTGGCT	.	105.0	38.0	78.0	0.0	.	42	.	.	Atlas-SNP
ZNF10	7556	hgsc.bcm.edu	hg19	12	133733009	133733009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF10	NM_015394	exon5	c.A1177G	p.I393V	CATCTCATTCTGC	.	66.0	25.0	64.0	0.0	.	58	.	.	Atlas-SNP
POMP	51371	hgsc.bcm.edu	hg19	13	29242666	29242666	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POMP	NM_015932	exon4	c.A219G	p.L73L	GGGTCTATTTGCT	.	75.0	19.0	68.0	0.0	.	15	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35756573	35756573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	NBEA,NS,carcinoma,0,1	NBEA	NM_015678	exon29	c.G4739A	p.R1580H	AGTATCGTGACAT	.	184.0	62.0	76.0	0.0	.	340	.	.	Atlas-SNP
NOVA1	4857	hgsc.bcm.edu	hg19	14	26917336	26917336	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NOVA1	NM_002515	exon5	c.T1353A	p.T451T	TGCACCAGTCAAC	.	263.0	96.0	232.0	0.0	.	146	.	.	Atlas-SNP
SLC10A1	6554	hgsc.bcm.edu	hg19	14	70252897	70252897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC10A1	NM_003049	exon2	c.T484C	p.S162P	CCAGTGATATCAC	.	76.0	36.0	70.0	0.0	.	32	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28465614	28465614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HERC2	NM_004667	exon37	c.C5829A	p.D1943E	CTCTGTGTCCGAA	.	23.0	9.0	18.0	0.0	.	501	.	.	Atlas-SNP
SLC12A1	6557	hgsc.bcm.edu	hg19	15	48595052	48595052	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC12A1	NM_001184832	exon27	c.T3270C	p.N1090N	AGGAAATCACAAA	.	89.0	31.0	66.0	0.0	.	243	.	.	Atlas-SNP
TNFAIP8L3	388121	hgsc.bcm.edu	hg19	15	51397266	51397266	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNFAIP8L3	NM_207381	exon1	c.G108A	p.R36R	GGCATCCCTTGTG	.	126.0	37.0	111.0	0.0	.	30	.	.	Atlas-SNP
MEGF11	84465	hgsc.bcm.edu	hg19	15	66209210	66209210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MEGF11	NM_032445	exon17	c.C2171T	p.A724V	TGGCAGGCCCCGT	.	81.0	29.0	44.0	0.0	.	70	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	TP53_ENST00000545858,NS,carcinoma,0,1	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	61.0	35.0	79.0	0.0	.	33396	.	.	Atlas-SNP
DDX42	11325	hgsc.bcm.edu	hg19	17	61890756	61890756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DDX42	NM_203499	exon15	c.G1844T	p.R615L	TGGTCCGGAACTT	.	85.0	23.0	87.0	0.0	.	86	.	.	Atlas-SNP
YES1	7525	hgsc.bcm.edu	hg19	18	745776	745776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	YES1	NM_005433	exon6	c.A656G	p.N219S	CCACCATTGTCAA	.	152.0	62.0	103.0	0.0	.	50	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23545393	23545393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF91	NM_003430	exon4	c.G388T	p.D130Y	ACTCATCCACACT	.	130.0	37.0	104.0	0.0	.	349	.	.	Atlas-SNP
PCSK2	5126	hgsc.bcm.edu	hg19	20	17208109	17208109	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	PCSK2,colon,carcinoma,0,2	PCSK2	NM_002594	exon1	c.C159T	p.H53H	AGAACACGGCTTT	.	86.0	33.0	80.0	0.0	.	112	.	.	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	hg19	21	33296847	33296847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HUNK	NM_014586	exon2	c.G329A	p.R110Q	TGCGGCGAGAGGG	.	67.0	18.0	38.0	0.0	.	74	.	.	Atlas-SNP
KRTAP10-12	386685	hgsc.bcm.edu	hg19	21	46117591	46117591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KRTAP10-12	NM_198699	exon1	c.C475T	p.P159S	TGCAAGCCCATCT	.	107.0	37.0	163.0	0.0	.	21	.	.	Atlas-SNP
PLA2G6	8398	hgsc.bcm.edu	hg19	22	38528998	38528998	+	Missense_Mutation	SNP	C	C	T	rs374007706		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLA2G6	NM_003560	exon7	c.G917A	p.R306Q	CAGCCCCGTTTCA	.	39.0	17.0	57.0	0.0	.	54	.	.	Atlas-SNP
MGAT3	4248	hgsc.bcm.edu	hg19	22	39883537	39883537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MGAT3	NM_002409	exon2	c.C185A	p.P62H	CCAGCCCCGAGCC	.	47.0	18.0	60.0	0.0	.	65	.	.	Atlas-SNP
PPARA	5465	hgsc.bcm.edu	hg19	22	46615711	46615711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPARA	NM_001001928	exon6	c.A511C	p.I171L	CTAGCGATTCGTT	.	43.0	22.0	25.0	0.0	.	36	.	.	Atlas-SNP
GPR34	2857	hgsc.bcm.edu	hg19	X	41555141	41555141	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPR34	NM_001097579	exon3	c.A255G	p.K85K	CCGTAAAAGAAAT	.	105.0	50.0	49.0	0.0	.	42	.	.	Atlas-SNP
OCRL	4952	hgsc.bcm.edu	hg19	X	128722192	128722192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OCRL	NM_000276	exon21	c.C2293T	p.L765F	GAAGAGCTCCAGC	.	35.0	28.0	27.0	0.0	.	117	.	.	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	4112	4112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	ENST00000361390	exon1	c.T806C	p.L269P	CCTCCCTGTTCTT	.	474.0	41.0	200.0	0.0	.	.	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14423	14423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	ENST00000361681	exon1	c.C251T	p.S84L	ACCCCTGACCCCC	.	710.0	223.0	277.0	0.0	.	.	.	.	Atlas-SNP
SPRR3	6707	hgsc.bcm.edu	hg19	1	152975806	152975829	+	In_Frame_Del	DEL	CCAGGCTACACCAAGGTCCCTGAA	CCAGGCTACACCAAGGTCCCTGAA	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	CCAGGCTACACCAAGGTCCCTGAA	CCAGGCTACACCAAGGTCCCTGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SPRR3	NM_001097589	exon2	c.309_332del	p.103_111del	.	.	85.0	17.0	44.0	0.0	.	45	.	.	Atlas-INDEL
PTPN3	5774	hgsc.bcm.edu	hg19	9	112145782	112145782	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPN3	NM_002829	exon23	c.2304delC	p.G768fs	.	.	54.0	18.0	60.0	0.0	.	106	.	.	Atlas-Indel,Pindel
MRPL11	65003	hgsc.bcm.edu	hg19	11	66204833	66204833	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MRPL11	NM_170739	exon3	c.302delC	p.A101fs	.	.	42.0	12.0	75.0	0.0	.	25	.	.	Atlas-INDEL
INTS10	55174	hgsc.bcm.edu	hg19	8	19682357	19682358	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	INTS10	NM_018142	exon8	c.880_881insA	p.Y294_M295delinsX	.	.	64.0	27.0	57.0	0.0	.	46	.	.	Atlas-INDEL
ABCB1	5243	hgsc.bcm.edu	hg19	7	87214868	87214868	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCB1	NM_000927	exon5	c.247delG	p.G83fs	.	.	40.0	11.0	46.0	0.0	.	263	.	.	Atlas-INDEL
