Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MMEL1	79258	hgsc.bcm.edu	hg19	1	2537745	2537745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MMEL1	NM_033467	exon8	c.T692C	p.V231A	ATGAGGACGCGCC	.	95.0	4.0	130.0	0.0	.	64	.	.	Atlas-SNP
MEGF6	1953	hgsc.bcm.edu	hg19	1	3414980	3414980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MEGF6	NM_001409	exon26	c.C3307T	p.R1103C	GGCAGCGGCCCGT	.	46.0	6.0	27.0	0.0	.	91	.	.	Atlas-SNP
ZNF684	127396	hgsc.bcm.edu	hg19	1	41012332	41012332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF684	NM_152373	exon5	c.A337G	p.M113V	CTGACTATGGAGA	.	76.0	32.0	88.0	0.0	.	37	.	.	Atlas-SNP
ZMYND12	84217	hgsc.bcm.edu	hg19	1	42914250	42914250	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZMYND12	NM_032257	exon3	c.C312T	p.H104H	ATCTTCGTGTTTC	.	151.0	50.0	167.0	0.0	.	35	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43869391	43869391	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SZT2	NM_015284	exon3	c.T273G	p.A91A	CCTGGCTTGGCAG	.	121.0	40.0	127.0	0.0	.	383	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43896222	43896222	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SZT2	NM_015284	exon31	c.A4365G	p.E1455E	GGTAGAATACCGG	.	76.0	4.0	78.0	0.0	.	383	.	.	Atlas-SNP
FAF1	11124	hgsc.bcm.edu	hg19	1	51210403	51210403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FAF1	NM_007051	exon5	c.T412C	p.S138P	TTTTGGACACAGG	.	66.0	4.0	58.0	0.0	.	64	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104	bycluster	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NRD1	NM_001101662	exon2	c.A449T	p.E150V	TCTTCCTCCACCT	.	205.0	19.0	216.0	0.0	.	89	.	T|0.024;A|0.976	Atlas-SNP
USP24	23358	hgsc.bcm.edu	hg19	1	55603294	55603294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	USP24	NM_015306	exon28	c.T3095C	p.V1032A	GTCTTCACTGTAA	.	60.0	4.0	61.0	0.0	.	323	.	.	Atlas-SNP
C1orf168	199920	hgsc.bcm.edu	hg19	1	57207872	57207872	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	C1orf168,NS,carcinoma,0,1	C1orf168	NM_001004303	exon12	c.A1566G	p.E522E	GACATCTTCATAC	.	46.0	2.0	58.0	0.0	.	102	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70509692	70509692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	LRRC7	NM_020794	exon20	c.T3911C	p.I1304T	GAGGTATTTCAGC	.	97.0	4.0	102.0	0.0	.	400	.	.	Atlas-SNP
ACADM	34	hgsc.bcm.edu	hg19	1	76198378	76198378	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ACADM	NM_001127328	exon3	c.C180T	p.A60A	ATTTGCCAGAGAG	.	122.0	35.0	154.0	0.0	.	50	.	.	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	hg19	1	86340381	86340381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	COL24A1	NM_152890	exon35	c.A3089G	p.D1030G	CCAACATCTCCCT	.	102.0	6.0	115.0	0.0	.	202	.	.	Atlas-SNP
KCNA10	3744	hgsc.bcm.edu	hg19	1	111060286	111060286	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KCNA10	NM_005549	exon1	c.T1124A	p.L375X	AACCCCAACTCCC	.	133.0	30.0	166.0	0.0	.	92	.	.	Atlas-SNP
RAP1A	5906	hgsc.bcm.edu	hg19	1	112247050	112247050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RAP1A	NM_001010935	exon7	c.A410G	p.Q137R	CAAGACAGTGGTG	.	69.0	4.0	62.0	0.0	.	14	.	.	Atlas-SNP
CD58	965	hgsc.bcm.edu	hg19	1	117087065	117087065	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CD58	NM_001144822	exon2	c.A232T	p.K78X	TATTTTTAAAAGA	.	183.0	68.0	163.0	0.0	.	40	.	.	Atlas-SNP
HIST2H2AB	317772	hgsc.bcm.edu	hg19	1	149859298	149859298	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	HIST2H2AB,NS,carcinoma,0,1	HIST2H2AB	NM_175065	exon1	c.G169T	p.E57X	GGTACTCGAGGAC	.	349.0	73.0	208.0	0.0	.	49	.	.	Atlas-SNP
TARS2	80222	hgsc.bcm.edu	hg19	1	150471707	150471707	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TARS2	NM_025150	exon13	c.C1555G	p.L519V	CAGGCCCTGAAGG	.	116.0	54.0	78.0	0.0	.	91	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DENND4B	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	122.0	18.0	48.0	0.0	.	210	.	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	hg19	1	154319146	154319146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ATP8B2	NM_020452	exon26	c.G3174T	p.W1058C	CATCTGGGGAAGC	.	518.0	157.0	347.0	0.0	.	158	.	.	Atlas-SNP
TRIM46	80128	hgsc.bcm.edu	hg19	1	155148089	155148089	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TRIM46	NM_025058	exon2	c.C291A	p.P97P	TCTCCCCAAGCCA	.	84.0	31.0	56.0	0.0	.	79	.	.	Atlas-SNP
THBS3	7059	hgsc.bcm.edu	hg19	1	155167450	155167450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	THBS3	NM_007112	exon20	c.G2303T	p.G768V	GTGTATCCTGGGG	.	156.0	18.0	107.0	0.0	.	70	.	.	Atlas-SNP
THBS3	7059	hgsc.bcm.edu	hg19	1	155167451	155167451	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	THBS3	NM_007112	exon21	c.2303-1G>A	.	TGTATCCTGGGGT	.	158.0	18.0	110.0	0.0	.	70	.	.	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155734765	155734765	+	Missense_Mutation	SNP	A	A	G	rs199671178	by1000genomes;alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GON4L	NM_032292	exon21	c.T4499C	p.V1500A	CGAAATACTTGAG	.	377.0	63.0	259.0	0.0	.	392	.	A|1.000;T|0.000	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	hg19	1	157514336	157514336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FCRL5	NM_031281	exon5	c.A560G	p.E187G	AATGGCTCTAGAG	.	110.0	57.0	61.0	0.0	.	177	.	.	Atlas-SNP
MAEL	84944	hgsc.bcm.edu	hg19	1	166958707	166958707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MAEL	NM_032858	exon1	c.T118C	p.S40P	TACTGCTCCTCAG	.	120.0	7.0	62.0	0.0	.	95	.	.	Atlas-SNP
FMO3	2328	hgsc.bcm.edu	hg19	1	171072961	171072961	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FMO3	NM_006894	exon3	c.A168G	p.K56K	TTACAAATCAGTC	.	288.0	153.0	169.0	0.0	.	73	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171511217	171511217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_015172	exon16	c.A4606G	p.R1536G	CCAAAGAGGGAAA	.	96.0	4.0	65.0	0.0	.	.	.	.	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172525148	172525148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_014283	exon4	c.C428T	p.P143L	TCACTCCAATCTC	.	96.0	4.0	54.0	0.0	.	.	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175348689	175348689	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TNR	NM_003285	exon9	c.A1962G	p.T654T	CTCACCTGTCAGG	.	169.0	24.0	95.0	0.0	.	399	.	.	Atlas-SNP
AXDND1	126859	hgsc.bcm.edu	hg19	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573	bycluster;by2hit2allele;byhapmap	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	GAAGAAGAACAAC	.	242.0	10.0	193.0	0.0	.	142	.	G|1.000;|0.000	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181765974	181765974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CACNA1E	NM_001205293	exon47	c.T6379C	p.S2127P	GGCAGGTCACAGA	.	171.0	7.0	110.0	0.0	.	778	.	.	Atlas-SNP
LAMC2	3918	hgsc.bcm.edu	hg19	1	183192335	183192335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	LAMC2	NM_005562	exon7	c.A829G	p.R277G	GTGGACAGAGGAG	.	200.0	8.0	159.0	0.0	.	113	.	.	Atlas-SNP
IVNS1ABP	10625	hgsc.bcm.edu	hg19	1	185267396	185267396	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	IVNS1ABP	NM_006469	exon15	c.T1700A	p.F567Y	CCATCAAAGCCAC	.	170.0	97.0	153.0	0.0	.	80	.	.	Atlas-SNP
IVNS1ABP	10625	hgsc.bcm.edu	hg19	1	185267406	185267406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	IVNS1ABP	NM_006469	exon15	c.T1690G	p.C564G	CACCACATACAAA	.	141.0	81.0	140.0	0.0	.	80	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190067205	190067205	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FAM5C	NM_199051	exon8	c.G2244A	p.A748A	ATTAAACGCCTGC	.	192.0	24.0	131.0	0.0	.	343	.	.	Atlas-SNP
LAD1	3898	hgsc.bcm.edu	hg19	1	201356005	201356005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	LAD1,trunk,malignant_melanoma,0,1	LAD1	NM_005558	exon3	c.G484T	p.V162L	TGCCCACCAAGCT	.	55.0	3.0	75.0	0.0	.	42	.	.	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	hg19	1	223179204	223179204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DISP1	NM_032890	exon10	c.G4465C	p.V1489L	GTGAGAGTGAAGT	.	290.0	43.0	215.0	0.0	.	145	.	.	Atlas-SNP
GUK1	2987	hgsc.bcm.edu	hg19	1	228336428	228336428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GUK1	NM_001242840	exon7	c.C601A	p.P201T	CCCGGGCCCATAC	.	80.0	26.0	45.0	0.0	.	34	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228564922	228564922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	OBSCN	NM_001271223	exon112	c.A26080G	p.S8694G	TACCTCAGCCCCC	.	79.0	4.0	34.0	0.0	.	2142	.	.	Atlas-SNP
OR2W3	343171	hgsc.bcm.edu	hg19	1	248059354	248059354	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	OR2W3	NM_001001957	exon1	c.T466A	p.S156T	GCCAACTCCTTGG	.	152.0	11.0	126.0	0.0	.	113	.	.	Atlas-SNP
OR2W3	343171	hgsc.bcm.edu	hg19	1	248059355	248059355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	OR2W3,scalp,carcinoma,0,6	OR2W3	NM_001001957	exon1	c.C467T	p.S156F	CCAACTCCTTGGC	.	145.0	16.0	123.0	0.0	.	113	.	.	Atlas-SNP
OR2T33	391195	hgsc.bcm.edu	hg19	1	248436937	248436937	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	OR2T33	NM_001004695	exon1	c.C180A	p.L60L	GCTCAGGAGGAAG	.	1030.0	456.0	640.0	0.0	.	133	.	.	Atlas-SNP
FAM150B	285016	hgsc.bcm.edu	hg19	2	286308	286308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FAM150B	NM_001002919	exon3	c.T289C	p.F97L	TTAGAAACTTGTC	.	110.0	5.0	134.0	0.0	.	12	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11750977	11750977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GREB1	NM_014668	exon18	c.T2830C	p.C944R	TGCCCCTGCGGCC	.	100.0	4.0	98.0	0.0	.	308	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15614223	15614223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NBAS	NM_015909	exon15	c.T1567C	p.S523P	TCGTGGAGCGCAA	.	93.0	4.0	109.0	0.0	.	246	.	.	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	hg19	2	25967273	25967273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ASXL2	NM_018263	exon12	c.T1933C	p.S645P	TGATGGAGACTGG	.	84.0	4.0	87.0	0.0	.	217	.	.	Atlas-SNP
NRBP1	29959	hgsc.bcm.edu	hg19	2	27656275	27656275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NRBP1	NM_013392	exon2	c.A135T	p.E45D	AGAGGAAGAAGAA	.	115.0	40.0	141.0	0.0	.	40	.	.	Atlas-SNP
SPAST	6683	hgsc.bcm.edu	hg19	2	32379552	32379552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SPAST	NM_014946	exon17	c.A1838G	p.D613G	TTGGAGATACCAC	.	85.0	4.0	59.0	0.0	.	61	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32660588	32660588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	BIRC6	NM_016252	exon14	c.A3434G	p.N1145S	AACAAAATGGGAA	.	72.0	4.0	83.0	0.0	.	838	.	.	Atlas-SNP
OXER1	165140	hgsc.bcm.edu	hg19	2	42991186	42991186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	OXER1	NM_148962	exon1	c.T134C	p.L45P	GAGCTCAGGTTAT	.	98.0	4.0	121.0	0.0	.	33	.	.	Atlas-SNP
KIAA1841	84542	hgsc.bcm.edu	hg19	2	61304085	61304085	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KIAA1841	NM_032506	exon6	c.A462G	p.E154E	TGATGAAGCAAAA	.	97.0	4.0	137.0	0.0	.	95	.	.	Atlas-SNP
ETAA1	54465	hgsc.bcm.edu	hg19	2	67630454	67630454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ETAA1	NM_019002	exon5	c.A640G	p.R214G	AACAAGAGGAATT	.	70.0	4.0	81.0	0.0	.	88	.	.	Atlas-SNP
AAK1	22848	hgsc.bcm.edu	hg19	2	69741744	69741744	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	AAK1	NM_014911	exon13	c.A1635G	p.Q545Q	CAGCTGTTGCTGT	.	98.0	5.0	80.0	0.0	.	121	.	.	Atlas-SNP
AAK1	22848	hgsc.bcm.edu	hg19	2	69741753	69741753	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	AAK1	NM_014911	exon13	c.G1626A	p.Q542Q	CTGTTGCTGTTGT	.	100.0	8.0	74.0	0.0	.	121	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71708030	71708030	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DYSF	NM_001130984	exon2	c.A109T	p.K37X	AGAACCAAAGTCA	.	224.0	85.0	272.0	0.0	.	536	.	.	Atlas-SNP
SMYD5	10322	hgsc.bcm.edu	hg19	2	73449933	73449933	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SMYD5	NM_006062	exon7	c.A693G	p.E231E	TGAGGAAGCAGTC	.	119.0	6.0	83.0	0.0	.	58	.	.	Atlas-SNP
C2orf78	388960	hgsc.bcm.edu	hg19	2	74043271	74043271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	C2orf78	NM_001080474	exon3	c.G1921T	p.G641W	GCACTCGGGAAAA	.	53.0	4.0	64.0	0.0	.	150	.	.	Atlas-SNP
ZC3H8	84524	hgsc.bcm.edu	hg19	2	112989436	112989436	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZC3H8	NM_032494	exon7	c.A822G	p.E274E	TTGTGTTTCAGGA	.	41.0	4.0	43.0	0.0	.	17	.	.	Atlas-SNP
GCA	25801	hgsc.bcm.edu	hg19	2	163216022	163216022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GCA	NM_012198	exon7	c.A587G	p.D196G	AAAGAGACCACTT	.	93.0	4.0	105.0	0.0	.	15	.	.	Atlas-SNP
GRB14	2888	hgsc.bcm.edu	hg19	2	165383605	165383605	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GRB14	NM_004490	exon4	c.A522G	p.L174L	GTTGGATAGCACT	.	84.0	4.0	64.0	0.0	.	73	.	.	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166911151	166911151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SCN1A	NM_001165964	exon4	c.T599C	p.F200S	TACGCAAATGTAA	.	76.0	4.0	83.0	0.0	.	641	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170013995	170013995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	LRP2	NM_004525	exon64	c.A11905G	p.T3969A	CACATGTTCTTTC	.	66.0	4.0	124.0	0.0	.	751	.	.	Atlas-SNP
PPIG	9360	hgsc.bcm.edu	hg19	2	170487422	170487422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PPIG	NM_004792	exon10	c.A686G	p.K229R	CAAAGAAAAGAAA	.	95.0	4.0	133.0	0.0	.	100	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179399440	179399440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TTN	NM_001267550	exon358	c.C101902T	p.P33968S	CCCCTGGTTTCAG	.	90.0	4.0	77.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179585665	179585665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TTN	NM_001267550	exon79	c.C23081T	p.T7694I	AACGCTGTGCTGC	.	99.0	4.0	98.0	0.0	.	18412	.	.	Atlas-SNP
SSFA2	6744	hgsc.bcm.edu	hg19	2	182780346	182780346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SSFA2	NM_001130445	exon11	c.A1979G	p.H660R	CCACACACCATAT	.	106.0	6.0	108.0	0.0	.	130	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185802216	185802216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF804A	NM_194250	exon4	c.T2093C	p.I698T	ACACAATACTTTT	.	47.0	5.0	37.0	0.0	.	322	.	.	Atlas-SNP
ITGAV	3685	hgsc.bcm.edu	hg19	2	187531442	187531442	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ITGAV	NM_002210	exon22	c.T2178C	p.G726G	AGCTGGTCTTCGT	.	76.0	4.0	73.0	0.0	.	124	.	.	Atlas-SNP
HSPE1-MOB4	0	hgsc.bcm.edu	hg19	2	198405093	198405093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_001202485	exon6	c.A394G	p.T132A	CCAGATACTTGCA	.	99.0	4.0	131.0	0.0	.	.	.	.	Atlas-SNP
CFLAR	8837	hgsc.bcm.edu	hg19	2	202025503	202025503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CFLAR	NM_003879	exon9	c.A1142G	p.K381R	CGATGAAGAATGT	.	89.0	4.0	101.0	0.0	.	37	.	.	Atlas-SNP
CDK5R2	8941	hgsc.bcm.edu	hg19	2	219825610	219825610	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	CDK5R2,right_lower_lobe,carcinoma,0,1	CDK5R2	NM_003936	exon1	c.C1068T	p.A356A	CGCGGCCGGAACC	.	25.0	2.0	13.0	0.0	.	17	.	.	Atlas-SNP
CCDC140	151278	hgsc.bcm.edu	hg19	2	223169002	223169002	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CCDC140	NM_153038	exon2	c.T381C	p.T127T	ACGTACTCTCCCG	.	84.0	4.0	92.0	0.0	.	20	.	.	Atlas-SNP
SP110	3431	hgsc.bcm.edu	hg19	2	231048350	231048350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SP110	NM_001185015	exon13	c.A1304G	p.K435R	TCCTTTTTCTTTT	.	76.0	4.0	102.0	0.0	.	105	.	.	Atlas-SNP
EFHD1	80303	hgsc.bcm.edu	hg19	2	233546307	233546307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EFHD1	NM_025202	exon4	c.T598C	p.S200P	GCCTTGTCATCGG	.	112.0	5.0	97.0	0.0	.	28	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234436105	234436105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	USP40	NM_018218	exon12	c.T1706C	p.L569S	AAGGTCAAATCCC	.	69.0	4.0	82.0	0.0	.	174	.	.	Atlas-SNP
MTERFD2	130916	hgsc.bcm.edu	hg19	2	242035461	242035461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	MTERFD2,NS,carcinoma,0,1	MTERFD2	NM_182501	exon4	c.C1098G	p.D366E	CGCCTCGTCGTCG	.	111.0	10.0	86.0	0.0	.	33	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10443863	10443863	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ATP2B2	NM_001683	exon4	c.A567G	p.E189E	TTTCTGTTCCTGC	.	85.0	4.0	98.0	0.0	.	304	.	.	Atlas-SNP
ANKRD28	23243	hgsc.bcm.edu	hg19	3	15727529	15727529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ANKRD28	NM_015199	exon20	c.A2059G	p.R687G	CTGTCCTTCCCCA	.	99.0	4.0	99.0	0.0	.	121	.	.	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	hg19	3	18438761	18438761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SATB1	NM_002971	exon6	c.A661G	p.N221D	TACTGTTCACAAT	.	96.0	5.0	112.0	0.0	.	96	.	.	Atlas-SNP
SGOL1	151648	hgsc.bcm.edu	hg19	3	20219761	20219761	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	SGOL1,NS,carcinoma,0,1	SGOL1	NM_001199254	exon5	c.416+2T>C	.	ATACTAACGGTAA	.	49.0	2.0	44.0	0.0	.	55	.	.	Atlas-SNP
OXSR1	9943	hgsc.bcm.edu	hg19	3	38289195	38289195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	OXSR1	NM_005109	exon14	c.A1294G	p.I432V	ACCAAGATCCCAA	.	113.0	5.0	149.0	0.0	.	74	.	.	Atlas-SNP
TMEM42	131616	hgsc.bcm.edu	hg19	3	44906569	44906569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TMEM42	NM_144638	exon3	c.A377G	p.E126G	GCCAGGAGGTCTT	.	143.0	6.0	127.0	0.0	.	15	.	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	hg19	3	49693795	49693795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	BSN	NM_003458	exon5	c.T6806C	p.I2269T	TTCCCATTGCTTC	.	85.0	4.0	111.0	0.0	.	272	.	.	Atlas-SNP
ITIH1	3697	hgsc.bcm.edu	hg19	3	52818435	52818435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ITIH1	NM_002215	exon11	c.A1349G	p.E450G	CCATGGAGAACAA	.	102.0	5.0	133.0	0.0	.	108	.	.	Atlas-SNP
DCP1A	55802	hgsc.bcm.edu	hg19	3	53324825	53324825	+	Splice_Site	SNP	C	C	A	rs147183966		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DCP1A	NM_018403	exon9	c.1444+1G>T	.	ATGGCACTGGCAC	.	21.0	8.0	7.0	0.0	.	30	.	.	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	hg19	3	65376936	65376936	+	Missense_Mutation	SNP	A	A	G	rs201132775	bycluster;alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MAGI1	NM_001033057	exon14	c.T2297C	p.V766A	GGGAGCACCTGTG	.	107.0	5.0	129.0	0.0	.	481	.	A|0.999;C|0.001	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78648068	78648068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ROBO1	NM_002941	exon31	c.A4951G	p.S1651G	TTCAGCTTTCAGT	.	95.0	4.0	129.0	0.0	.	833	.	.	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	hg19	3	97852336	97852336	+	Silent	SNP	G	G	A	rs138973744		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	OR5H1	NM_001005338	exon1	c.G795A	p.P265P	ATCTCCGCAAGCA	.	208.0	54.0	238.0	0.0	.	71	.	G|1.000;A|0.000	Atlas-SNP
ALCAM	214	hgsc.bcm.edu	hg19	3	105268982	105268982	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ALCAM	NM_001627	exon12	c.T1386C	p.S462S	GGAATCTCCTTAT	.	71.0	4.0	71.0	0.0	.	71	.	.	Atlas-SNP
PHLDB2	90102	hgsc.bcm.edu	hg19	3	111671430	111671430	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PHLDB2	NM_001134439	exon11	c.T2643C	p.S881S	TAGAAGTCTGGAA	.	50.0	4.0	47.0	0.0	.	449	.	.	Atlas-SNP
TIGIT	201633	hgsc.bcm.edu	hg19	3	114018526	114018526	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TIGIT	NM_173799	exon3	c.C474A	p.I158I	AGTCATCGTGGTG	.	73.0	5.0	75.0	0.0	.	42	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121411031	121411031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GOLGB1	NM_001256486	exon14	c.T7180C	p.S2394P	TGCCAGAAAGCAG	.	80.0	4.0	107.0	0.0	.	319	.	.	Atlas-SNP
SMC4	10051	hgsc.bcm.edu	hg19	3	160148405	160148405	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SMC4	NM_005496	exon18	c.A2814G	p.Q938Q	GGCACAAGACTCT	.	78.0	28.0	109.0	0.0	.	135	.	.	Atlas-SNP
GOLIM4	27333	hgsc.bcm.edu	hg19	3	167728183	167728183	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GOLIM4	NM_014498	exon16	c.A1965G	p.G655G	CTCTTCTCCATCA	.	71.0	4.0	77.0	0.0	.	71	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910635	184910635	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EHHADH	NM_001966	exon7	c.A1551G	p.G517G	AAAAGGTCCCATT	.	143.0	6.0	154.0	0.0	.	73	.	.	Atlas-SNP
MAP3K13	9175	hgsc.bcm.edu	hg19	3	185146486	185146486	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MAP3K13	NM_004721	exon2	c.T117C	p.S39S	CCCTTCTCCCAAG	.	85.0	4.0	98.0	0.0	.	209	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195518119	195518119	+	Missense_Mutation	SNP	A	A	T	rs201789760	bycluster	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MUC4	NM_018406	exon2	c.T332A	p.M111K	GTCTCCATCACAT	.	150.0	6.0	147.0	0.0	.	1505	.	.	Atlas-SNP
ADD1	118	hgsc.bcm.edu	hg19	4	2906529	2906529	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ADD1	NM_014190	exon10	c.G1200T	p.L400L	TGCTCTGAGAGAG	.	188.0	40.0	174.0	0.0	.	56	.	.	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	hg19	4	36085011	36085011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ARAP2	NM_015230	exon29	c.A4487G	p.K1496R	ATTTTCTTTTTCA	.	95.0	4.0	111.0	0.0	.	210	.	.	Atlas-SNP
UBE2K	3093	hgsc.bcm.edu	hg19	4	39747379	39747379	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	UBE2K	NM_005339	exon3	c.A165T	p.R55S	AGGAAGATACCAA	.	172.0	75.0	269.0	1.0	.	16	.	.	Atlas-SNP
CWH43	80157	hgsc.bcm.edu	hg19	4	48990546	48990546	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CWH43	NM_025087	exon2	c.T96C	p.F32F	TTACTTTCCTTTG	.	91.0	4.0	66.0	0.0	.	101	.	.	Atlas-SNP
CXCL5	6374	hgsc.bcm.edu	hg19	4	74864222	74864222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CXCL5	NM_002994	exon1	c.T77C	p.L26P	AGCAGCAGCAGCA	.	144.0	30.0	94.0	0.0	.	15	.	.	Atlas-SNP
BTC	685	hgsc.bcm.edu	hg19	4	75673278	75673278	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	BTC	NM_001729	exon5	c.A510G	p.E170E	AATATCTTCATTG	.	94.0	4.0	93.0	0.0	.	23	.	.	Atlas-SNP
RCHY1	25898	hgsc.bcm.edu	hg19	4	76415820	76415820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RCHY1	NM_015436	exon8	c.C628T	p.P210S	CTGATGGCATAGG	.	155.0	70.0	185.0	0.0	.	17	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79387588	79387588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FRAS1	NM_025074	exon50	c.A7256G	p.E2419G	GAAAAGAGGTGAG	.	143.0	6.0	125.0	0.0	.	779	.	.	Atlas-SNP
SMARCAD1	56916	hgsc.bcm.edu	hg19	4	95197544	95197544	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SMARCAD1	NM_001128429	exon15	c.A1863G	p.K621K	GCTGAAACTTAAT	.	73.0	5.0	87.0	0.0	.	97	.	.	Atlas-SNP
USP53	54532	hgsc.bcm.edu	hg19	4	120188512	120188512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	USP53	NM_019050	exon12	c.T1010C	p.I337T	AATGCATTCGATG	.	97.0	4.0	110.0	0.0	.	69	.	.	Atlas-SNP
ADAD1	132612	hgsc.bcm.edu	hg19	4	123332460	123332460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	ADAD1,NS,carcinoma,0,2	ADAD1	NM_139243	exon9	c.C932T	p.S311F	CAACTTCTAATCT	.	287.0	35.0	344.0	0.0	.	94	.	.	Atlas-SNP
PRSS48	345062	hgsc.bcm.edu	hg19	4	152201018	152201018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PRSS48	NM_183375	exon2	c.G123T	p.W41C	GCCTTGGCAGGTC	.	135.0	7.0	128.0	0.0	.	91	.	.	Atlas-SNP
PRSS48	345062	hgsc.bcm.edu	hg19	4	152212524	152212524	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PRSS48	NM_183375	exon5	c.A906G	p.R302R	ACACAGAGTAGGC	.	149.0	6.0	175.0	0.0	.	91	.	.	Atlas-SNP
PET112	5188	hgsc.bcm.edu	hg19	4	152593987	152593987	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PET112	NM_004564	exon12	c.A1472T	p.Q491L	TCAAGCTGCTTTT	.	215.0	40.0	168.0	0.0	.	43	.	.	Atlas-SNP
FGB	2244	hgsc.bcm.edu	hg19	4	155490755	155490755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FGB	NM_005141	exon7	c.G1048A	p.D350N	AAAGGAGACAAAG	.	94.0	5.0	91.0	0.0	.	71	.	.	Atlas-SNP
TKTL2	84076	hgsc.bcm.edu	hg19	4	164393283	164393283	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TKTL2	NM_032136	exon1	c.T1604A	p.V535D	TCGATGACACGGA	.	144.0	38.0	108.0	0.0	.	130	.	.	Atlas-SNP
TRIM60	166655	hgsc.bcm.edu	hg19	4	165962541	165962541	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	TRIM60,caecum,carcinoma,0,1	TRIM60	NM_001258025	exon4	c.T1317C	p.T439T	CTATACTTTTAAC	.	49.0	2.0	60.0	0.0	.	73	.	.	Atlas-SNP
NEK1	4750	hgsc.bcm.edu	hg19	4	170502055	170502055	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NEK1	NM_001199397	exon12	c.808-2A>G	.	ATAAGCTGAGATT	.	90.0	4.0	88.0	0.0	.	203	.	.	Atlas-SNP
HPGD	3248	hgsc.bcm.edu	hg19	4	175443546	175443546	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HPGD	NM_000860	exon1	c.A57G	p.R19R	AAAGGCTCTGCCT	.	120.0	5.0	75.0	0.0	.	19	.	.	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	hg19	5	155484	155484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLEKHG4B	NM_052909	exon7	c.T1066A	p.C356S	GCAAACTGTGAAG	.	168.0	68.0	170.0	0.0	.	167	.	.	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	hg19	5	174118	174118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLEKHG4B	NM_052909	exon16	c.A3239G	p.D1080G	CTCAGGACACCTA	.	95.0	4.0	107.0	0.0	.	167	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19503117	19503117	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CDH18	NM_001167667	exon11	c.T1614C	p.T538T	CTTCAGAGTGAAG	.	73.0	4.0	63.0	0.0	.	561	.	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33684042	33684042	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ADAMTS12	NM_030955	exon4	c.G753T	p.L251L	CACCACCAGTGTC	.	127.0	70.0	84.0	0.0	.	464	.	.	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	hg19	5	102444410	102444410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GIN1	NM_017676	exon2	c.T2C	p.M1T	CGGACCATTGTGA	.	61.0	4.0	58.0	0.0	.	53	.	.	Atlas-SNP
SLC4A9	83697	hgsc.bcm.edu	hg19	5	139739997	139739997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SLC4A9	NM_001258428	exon1	c.A176G	p.Q59R	TCATTCAGCTGAA	.	76.0	5.0	70.0	0.0	.	125	.	.	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	hg19	5	140572961	140572961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PCDHB10	NM_018930	exon1	c.A836G	p.Y279C	TATCCTATTCATT	.	80.0	6.0	82.0	0.0	.	177	.	.	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	hg19	5	140857641	140857641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PCDHGC3	NM_032402	exon1	c.A1958G	p.E653G	ATGGGGAGCCTTC	.	71.0	4.0	64.0	0.0	.	173	.	.	Atlas-SNP
FBXO38	81545	hgsc.bcm.edu	hg19	5	147788757	147788757	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FBXO38	NM_001271723	exon8	c.C939A	p.Y313X	TGGTTACCTCATC	.	276.0	70.0	242.0	0.0	.	115	.	.	Atlas-SNP
AFAP1L1	134265	hgsc.bcm.edu	hg19	5	148699221	148699221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	AFAP1L1,NS,carcinoma,0,1	AFAP1L1	NM_001146337	exon13	c.C1556T	p.A519V	CGGAGGCGCTGCA	.	111.0	25.0	88.0	0.0	.	86	.	.	Atlas-SNP
NMUR2	56923	hgsc.bcm.edu	hg19	5	151784407	151784407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NMUR2	NM_020167	exon1	c.T268A	p.S90T	GGTCAGAGACCGC	.	109.0	56.0	100.0	0.0	.	111	.	.	Atlas-SNP
SH3PXD2B	285590	hgsc.bcm.edu	hg19	5	171780994	171780994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SH3PXD2B	NM_001017995	exon9	c.T683C	p.V228A	TAGATGACTGTGT	.	108.0	5.0	65.0	0.0	.	91	.	.	Atlas-SNP
ZNF354C	30832	hgsc.bcm.edu	hg19	5	178506491	178506491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF354C	NM_014594	exon5	c.A1058G	p.E353G	CAGGTGAGAAACC	.	82.0	4.0	48.0	0.0	.	77	.	.	Atlas-SNP
CNOT6	57472	hgsc.bcm.edu	hg19	5	179956371	179956371	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CNOT6	NM_015455	exon2	c.C95G	p.A32G	ACTGGGCAGAGCT	.	179.0	39.0	202.0	0.0	.	47	.	.	Atlas-SNP
RIOK1	83732	hgsc.bcm.edu	hg19	6	7405545	7405545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RIOK1	NM_031480	exon12	c.A1160G	p.D387G	TCACAGATCCATC	.	93.0	4.0	92.0	0.0	.	36	.	.	Atlas-SNP
PRSS16	10279	hgsc.bcm.edu	hg19	6	27220676	27220676	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PRSS16	NM_005865	exon9	c.T1098C	p.S366S	ACTGTCTGGTGTG	.	215.0	83.0	201.0	0.0	.	66	.	.	Atlas-SNP
GTF2H4	2968	hgsc.bcm.edu	hg19	6	30880224	30880224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GTF2H4	NM_001517	exon11	c.A1078G	p.T360A	GGCATCACAGCCC	.	85.0	4.0	82.0	0.0	.	38	.	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30917315	30917315	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DPCR1	NM_080870	exon2	c.A1074G	p.P358P	ATTCCCAGCAGAG	.	98.0	4.0	108.0	0.0	.	99	.	.	Atlas-SNP
CDSN	1041	hgsc.bcm.edu	hg19	6	31084902	31084902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CDSN	NM_001264	exon2	c.A490G	p.S164G	TGCTGCTGAACTG	.	98.0	4.0	74.0	0.0	.	48	.	.	Atlas-SNP
FGD2	221472	hgsc.bcm.edu	hg19	6	36982465	36982465	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FGD2	NM_173558	exon7	c.A867G	p.A289A	CAATGCAGCCATC	.	94.0	4.0	102.0	0.0	.	65	.	.	Atlas-SNP
KIF6	221458	hgsc.bcm.edu	hg19	6	39513359	39513359	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KIF6	NM_145027	exon11	c.G1287A	p.K429K	GTTTACCTTTAAA	.	54.0	21.0	81.0	0.0	.	233	.	.	Atlas-SNP
XPO5	57510	hgsc.bcm.edu	hg19	6	43530011	43530011	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	XPO5	NM_020750	exon9	c.G984A	p.A328A	GCCCAGCGCACAC	.	96.0	4.0	98.0	0.0	.	79	.	.	Atlas-SNP
PAQR8	85315	hgsc.bcm.edu	hg19	6	52268756	52268756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PAQR8	NM_133367	exon2	c.A745G	p.T249A	TACCACACCCTCC	.	126.0	6.0	105.0	0.0	.	31	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75893787	75893787	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	COL12A1	NM_004370	exon9	c.T1071C	p.S357S	ACTAGGAGATGGA	.	90.0	4.0	125.0	0.0	.	385	.	.	Atlas-SNP
SENP6	26054	hgsc.bcm.edu	hg19	6	76380428	76380428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	SENP6_ENST00000447266,caecum,carcinoma,0,2	SENP6	NM_015571	exon11	c.C1384T	p.P462S	ATAGAGCCTGTAA	.	29.0	3.0	28.0	0.0	.	189	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101095306	101095306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	ASCC3,NS,carcinoma,0,1	ASCC3	NM_006828	exon21	c.G3274A	p.A1092T	AAAGAGCACGGAC	.	64.0	3.0	71.0	0.0	.	205	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106967638	106967638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	AIM1	NM_001624	exon2	c.T1331C	p.M444T	CGGCCATGCCAAA	.	92.0	4.0	80.0	0.0	.	161	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111711382	111711382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	REV3L	NM_002912	exon6	c.T664C	p.S222P	TTAAAGAGCTGCA	.	104.0	6.0	134.0	0.0	.	386	.	.	Atlas-SNP
VNN1	8876	hgsc.bcm.edu	hg19	6	133035128	133035128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	VNN1	NM_004666	exon1	c.T47C	p.V16A	CTTGAGACATAGA	.	48.0	4.0	80.0	0.0	.	69	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136599813	136599813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	BCLAF1_ENST00000531224,colon,carcinoma,0,1	BCLAF1	NM_014739	exon4	c.G206T	p.R69L	TAAGGTCGTCTCA	.	106.0	25.0	149.0	0.0	.	203	.	.	Atlas-SNP
C6orf211	79624	hgsc.bcm.edu	hg19	6	151775692	151775692	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	C6orf211,NS,carcinoma,0,1	C6orf211	NM_024573	exon2	c.A51G	p.A17A	ATTTGCATATCTT	.	85.0	4.0	100.0	0.0	.	30	.	.	Atlas-SNP
CCDC170	80129	hgsc.bcm.edu	hg19	6	151917535	151917535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_025059	exon9	c.A1533G	p.I511M	GAAAATAGCCCAG	.	51.0	4.0	80.0	0.0	.	.	.	.	Atlas-SNP
PLG	5340	hgsc.bcm.edu	hg19	6	161158038	161158038	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLG	NM_000301	exon14	c.A1801C	p.R601R	AGAACAAGGTAAG	.	60.0	45.0	89.0	0.0	.	150	.	.	Atlas-SNP
GPNMB	10457	hgsc.bcm.edu	hg19	7	23313776	23313776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GPNMB	NM_001005340	exon11	c.T1652C	p.V551A	AAGCCGTGTTCTT	.	117.0	5.0	98.0	0.0	.	88	.	.	Atlas-SNP
UPP1	7378	hgsc.bcm.edu	hg19	7	48147063	48147063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	UPP1	NM_003364	exon8	c.C752T	p.S251F	TGGAGTCCTCGGT	.	143.0	31.0	102.0	0.0	.	35	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48317894	48317894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ABCA13	NM_152701	exon18	c.C7103A	p.A2368D	TTAATGCCCTTCT	.	70.0	29.0	86.0	0.0	.	1192	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51097117	51097117	+	Missense_Mutation	SNP	T	T	C	rs376884962		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	COBL	NM_015198	exon10	c.A1676G	p.N559S	TTTCTATTGGAAA	.	142.0	30.0	102.0	0.0	.	167	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82581498	82581498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	Q9Y6V0-3,colon,carcinoma,-1,3	PCLO	NM_014510	exon5	c.T8771A	p.I2924K	TCTTCTATTATTT	.	69.0	4.0	44.0	0.0	.	1506	.	.	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92888896	92888896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CCDC132	NM_024553	exon9	c.T611C	p.L204P	TGTGCCTTGAATG	.	65.0	4.0	56.0	0.0	.	136	.	.	Atlas-SNP
CASD1	64921	hgsc.bcm.edu	hg19	7	94167114	94167114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CASD1	NM_022900	exon9	c.A1174G	p.K392E	TTCATGAAGGAAA	.	76.0	4.0	68.0	0.0	.	70	.	.	Atlas-SNP
ATP5J2-PTCD1	100526740	hgsc.bcm.edu	hg19	7	99021532	99021532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_001198879	exon8	c.G1933T	p.A645S	TGGCCGCGTTGAT	.	304.0	132.0	216.0	0.0	.	.	.	.	Atlas-SNP
CNPY4	245812	hgsc.bcm.edu	hg19	7	99722198	99722198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CNPY4	NM_152755	exon5	c.A527G	p.E176G	ATCAGGAGCAGCC	.	99.0	5.0	99.0	0.0	.	18	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100684024	100684024	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MUC17	NM_001040105	exon3	c.T9327C	p.G3109G	AACAGGTGTGCCT	.	87.0	4.0	77.0	0.0	.	804	.	.	Atlas-SNP
LRRC17	10234	hgsc.bcm.edu	hg19	7	102575002	102575002	+	Missense_Mutation	SNP	A	A	T	rs77576273		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	LRRC17	NM_005824	exon2	c.A642T	p.E214D	TAATGAAGAAGAA	.	9.0	4.0	3.0	0.0	.	45	.	.	Atlas-SNP
ING3	54556	hgsc.bcm.edu	hg19	7	120607679	120607679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ING3	NM_019071	exon7	c.A533G	p.D178G	CGTCAGATGCCTC	.	73.0	4.0	87.0	0.0	.	36	.	.	Atlas-SNP
GPR37	2861	hgsc.bcm.edu	hg19	7	124387043	124387043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GPR37	NM_005302	exon2	c.A1378G	p.T460A	AGCAGGTGATGGT	.	92.0	4.0	59.0	0.0	.	89	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128445480	128445480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CCDC136	NM_001201372	exon7	c.A964G	p.T322A	TCTCAGACTTCAG	.	87.0	5.0	65.0	0.0	.	170	.	.	Atlas-SNP
DGKI	9162	hgsc.bcm.edu	hg19	7	137154364	137154364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DGKI	NM_004717	exon25	c.A2429G	p.D810G	TCATGGTCCTGGA	.	91.0	4.0	57.0	0.0	.	335	.	.	Atlas-SNP
SVOPL	136306	hgsc.bcm.edu	hg19	7	138329500	138329500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SVOPL	NM_001139456	exon8	c.T751C	p.S251P	TGACCGAGCGGTT	.	85.0	4.0	59.0	0.0	.	111	.	.	Atlas-SNP
UBN2	254048	hgsc.bcm.edu	hg19	7	138954250	138954250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	UBN2	NM_173569	exon8	c.A1577G	p.K526R	TGAAGAAGTTACA	.	80.0	4.0	52.0	0.0	.	90	.	.	Atlas-SNP
ZNF786	136051	hgsc.bcm.edu	hg19	7	148768069	148768069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF786	NM_152411	exon4	c.A1795G	p.N599D	TCCTGTTGCACTC	.	99.0	4.0	86.0	0.0	.	69	.	.	Atlas-SNP
SSPO	23145	hgsc.bcm.edu	hg19	7	149523267	149523267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	NM_198455_2,lower_third,carcinoma,0,1	.	NM_198455	exon101	c.A14350G	p.M4784V	GGCACTATGGAGC	.	71.0	3.0	49.0	0.0	.	.	.	.	Atlas-SNP
FBXO25	26260	hgsc.bcm.edu	hg19	8	408474	408474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FBXO25	NM_183420	exon8	c.A766G	p.T256A	CAGGTGACCCCCA	.	103.0	5.0	154.0	0.0	.	25	.	.	Atlas-SNP
XKR5	389610	hgsc.bcm.edu	hg19	8	6681155	6681155	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	XKR5,caecum,carcinoma,0,1	XKR5	NM_207411	exon4	c.A525G	p.P175P	GGCCCATGGCATG	.	71.0	3.0	103.0	0.0	.	20	.	.	Atlas-SNP
TUSC3	7991	hgsc.bcm.edu	hg19	8	15605922	15605922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	TUSC3,caecum,carcinoma,0,1	TUSC3	NM_178234	exon9	c.T976C	p.F326L	TTCTTCTTCAGTT	.	81.0	4.0	145.0	0.0	.	98	.	.	Atlas-SNP
ASAH1	427	hgsc.bcm.edu	hg19	8	17920692	17920692	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ASAH1	NM_004315	exon8	c.551+2T>C	.	TTACTTACCCAAG	.	82.0	4.0	147.0	0.0	.	71	.	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	28980143	28980143	+	Missense_Mutation	SNP	T	T	C	rs370420261		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	KIF13B_ENST00000524189,colon,carcinoma,0,1	KIF13B	NM_015254	exon29	c.A3500G	p.E1167G	TGTGTCTCCATCC	.	74.0	3.0	136.0	0.0	.	192	.	.	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30705230	30705230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TEX15	NM_031271	exon1	c.A1304G	p.E435G	ATGTTCTCTAATG	.	81.0	4.0	109.0	0.0	.	350	.	.	Atlas-SNP
WRN	7486	hgsc.bcm.edu	hg19	8	30938674	30938674	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	WRN	NM_000553	exon9	c.A1131G	p.G377G	AGATGGAGTAGAA	.	95.0	4.0	153.0	0.0	.	116	.	.	Atlas-SNP
HOOK3	84376	hgsc.bcm.edu	hg19	8	42812266	42812266	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HOOK3	NM_032410	exon7	c.T498C	p.A166A	CTCTGCTGGAAAT	.	84.0	4.0	83.0	0.0	.	71	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52321315	52321315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PXDNL	NM_144651	exon17	c.G2869T	p.G957W	GGTCCCCGGCCAG	.	166.0	32.0	118.0	0.0	.	414	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77690642	77690642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZFHX4	NM_024721	exon4	c.T3292C	p.F1098L	GAGATCTTTTTTG	.	146.0	6.0	82.0	0.0	.	878	.	.	Atlas-SNP
NBN	4683	hgsc.bcm.edu	hg19	8	90960118	90960118	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NBN	NM_002485	exon12	c.A1848G	p.Q616Q	ATTTTCTTGCTAA	.	83.0	4.0	85.0	0.0	.	86	.	.	Atlas-SNP
RGS22	26166	hgsc.bcm.edu	hg19	8	101016167	101016167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RGS22	NM_015668	exon17	c.A2614G	p.T872A	AATGAGTCTCAAG	.	79.0	6.0	65.0	0.0	.	319	.	.	Atlas-SNP
GRHL2	79977	hgsc.bcm.edu	hg19	8	102589654	102589654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GRHL2	NM_024915	exon7	c.T910C	p.F304L	GTGGTCTTCAGTG	.	77.0	4.0	47.0	0.0	.	68	.	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	hg19	8	106456547	106456547	+	Missense_Mutation	SNP	G	G	A	rs374450510	alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZFPM2	NM_012082	exon3	c.G239A	p.G80E	CAGATGGGGACAC	.	84.0	4.0	61.0	0.0	.	219	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139890424	139890424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	COL22A1	NM_152888	exon3	c.G227T	p.R76L	CCCACACGGGTGC	.	73.0	22.0	44.0	0.0	.	390	.	.	Atlas-SNP
TSNARE1	203062	hgsc.bcm.edu	hg19	8	143399967	143399967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TSNARE1	NM_145003	exon7	c.A922G	p.T308A	CAATGGTCTTGTT	.	64.0	4.0	65.0	0.0	.	59	.	.	Atlas-SNP
ZNF7	7553	hgsc.bcm.edu	hg19	8	146067567	146067567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	ZNF7,NS,carcinoma,-2,1	ZNF7	NM_003416	exon5	c.G1075A	p.E359K	ACTGGGGAGAGGC	.	39.0	2.0	59.0	0.0	.	62	.	.	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	hg19	9	2039821	2039821	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	SMARCA2_ENST00000349721,caecum,carcinoma,0,2	SMARCA2	NM_139045	exon4	c.G711A	p.Q237Q	GCAACAGCAGCCG	.	77.0	7.0	76.0	2.0	.	313	.	.	Atlas-SNP
CDC37L1	55664	hgsc.bcm.edu	hg19	9	4688579	4688579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CDC37L1	NM_017913	exon3	c.A481C	p.K161Q	ATGCAAAAATATG	.	160.0	53.0	176.0	0.0	.	19	.	.	Atlas-SNP
KIAA1432	57589	hgsc.bcm.edu	hg19	9	5756332	5756332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KIAA1432	NM_001135920	exon16	c.T1813C	p.C605R	GCAGACTGTTCAA	.	88.0	4.0	82.0	0.0	.	97	.	.	Atlas-SNP
KIAA1432	57589	hgsc.bcm.edu	hg19	9	5772583	5772583	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KIAA1432	NM_020829	exon24	c.T3636C	p.G1212G	TATTGGTTCAGCC	.	92.0	4.0	103.0	0.0	.	97	.	.	Atlas-SNP
TTC39B	158219	hgsc.bcm.edu	hg19	9	15177727	15177727	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TTC39B	NM_152574	exon18	c.A1809G	p.Q603Q	TTCAGCTTGCAAG	.	80.0	4.0	111.0	0.0	.	83	.	.	Atlas-SNP
CA9	768	hgsc.bcm.edu	hg19	9	35674185	35674185	+	Missense_Mutation	SNP	C	C	T	rs113670057		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CA9	NM_001216	exon1	c.C229T	p.P77S	GAGGATCCACCCG	.	87.0	6.0	103.0	0.0	.	48	.	C|0.500;T|0.500	Atlas-SNP
CA9	768	hgsc.bcm.edu	hg19	9	35674228	35674228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	CA9,NS,carcinoma,0,2	CA9	NM_001216	exon1	c.G272A	p.G91E	TACCTGGAGAGGA	.	82.0	7.0	95.0	0.0	.	48	.	.	Atlas-SNP
ZCCHC7	84186	hgsc.bcm.edu	hg19	9	37357124	37357124	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZCCHC7	NM_032226	exon9	c.T1491C	p.R497R	TCACCGTTCATCA	.	95.0	4.0	152.0	0.0	.	56	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37740139	37740139	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FRMPD1	NM_014907	exon15	c.T1614C	p.P538P	CGAACCTCTCTCT	.	99.0	5.0	83.0	0.0	.	237	.	.	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	hg19	9	77386643	77386643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TRPM6	NM_017662	exon25	c.A3512G	p.E1171G	ATTCGTTCCTCAC	.	88.0	4.0	80.0	0.0	.	377	.	.	Atlas-SNP
GNAQ	2776	hgsc.bcm.edu	hg19	9	80537112	80537112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	GNAQ,NS,carcinoma,0,2	GNAQ	NM_002072	exon2	c.A286T	p.T96S	TGAGTGTGTCCAT	.	156.0	8.0	139.0	1.0	.	384	.	.	Atlas-SNP
ZNF367	195828	hgsc.bcm.edu	hg19	9	99180148	99180148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF367	NM_153695	exon1	c.T167C	p.L56P	GGGATGAGCGGCG	.	61.0	4.0	46.0	0.0	.	27	.	.	Atlas-SNP
RAD23B	5887	hgsc.bcm.edu	hg19	9	110064350	110064350	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RAD23B	NM_002874	exon3	c.A183G	p.E61E	CAAAGAATATAAA	.	87.0	4.0	118.0	0.0	.	31	.	.	Atlas-SNP
CTNNAL1	8727	hgsc.bcm.edu	hg19	9	111710491	111710491	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	CTNNAL1,mucosal,malignant_melanoma,0,1	CTNNAL1	NM_003798	exon15	c.C1859G	p.S620C	TCCTGGGAAGTTT	.	27.0	2.0	22.0	0.0	.	51	.	.	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114454237	114454237	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	C9orf84_ENST00000374287,NS,carcinoma,-2,2	C9orf84	NM_173521	exon25	c.A3828G	p.K1276K	TACATCTTTATTT	.	40.0	3.0	37.0	0.0	.	207	.	.	Atlas-SNP
TTLL11	158135	hgsc.bcm.edu	hg19	9	124855592	124855592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TTLL11	NM_001139442	exon1	c.G106T	p.A36S	TCACCGCATCGAG	.	30.0	13.0	22.0	0.0	.	67	.	.	Atlas-SNP
OR1B1	347169	hgsc.bcm.edu	hg19	9	125391426	125391426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	OR1B1	NM_001004450	exon1	c.A389G	p.D130G	AGGGGGTCACAGA	.	75.0	4.0	48.0	0.0	.	48	.	.	Atlas-SNP
PTGES2	80142	hgsc.bcm.edu	hg19	9	130887595	130887595	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PTGES2	NM_025072	exon2	c.G405C	p.V135V	CCTGCGCACAGGG	.	122.0	54.0	96.0	0.0	.	14	.	.	Atlas-SNP
PTGES2	80142	hgsc.bcm.edu	hg19	9	130887600	130887600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PTGES2	NM_025072	exon2	c.C400T	p.P134S	GCACAGGGTTCAC	.	123.0	55.0	95.0	0.0	.	14	.	.	Atlas-SNP
SLC27A4	10999	hgsc.bcm.edu	hg19	9	131105476	131105476	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SLC27A4	NM_005094	exon2	c.G65C	p.W22S	TGCCCTGGACCCA	.	337.0	163.0	256.0	1.0	.	41	.	.	Atlas-SNP
LRRC8A	56262	hgsc.bcm.edu	hg19	9	131670047	131670047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	LRRC8A	NM_001127244	exon3	c.A604G	p.S202G	ACCGTCAGTGAGG	.	84.0	27.0	64.0	0.0	.	69	.	.	Atlas-SNP
UBAC1	10422	hgsc.bcm.edu	hg19	9	138836944	138836944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.,1	UBAC1	NM_016172	exon7	c.A806C	p.E269A	CTGGCCTCCTCAT	.	21.0	6.0	1.0	0.0	.	40	.	.	Atlas-SNP
SEC16A	9919	hgsc.bcm.edu	hg19	9	139368633	139368633	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SEC16A	NM_014866	exon3	c.T3435C	p.P1145P	AAGTGCAGGCACT	.	96.0	4.0	74.0	0.0	.	249	.	.	Atlas-SNP
DPP7	29952	hgsc.bcm.edu	hg19	9	140008791	140008791	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DPP7	NM_013379	exon3	c.T225C	p.T75T	GTTCCCAGTGTAG	.	34.0	4.0	33.0	0.0	.	22	.	.	Atlas-SNP
DNAJC1	64215	hgsc.bcm.edu	hg19	10	22209794	22209794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DNAJC1	NM_022365	exon4	c.T470C	p.L157P	AACAAGAGTAATG	.	78.0	4.0	83.0	0.0	.	42	.	.	Atlas-SNP
COMMD3-BMI1	0	hgsc.bcm.edu	hg19	10	22618054	22618054	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_001204062	exon13	c.A1077G	p.R359R	CTGGAGAAGGGTA	.	53.0	4.0	53.0	0.0	.	.	.	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24669829	24669829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KIAA1217	NM_019590	exon3	c.A386G	p.Q129R	GTCCTCAACCACC	.	69.0	4.0	58.0	0.0	.	235	.	.	Atlas-SNP
ANKRD26	22852	hgsc.bcm.edu	hg19	10	27294602	27294602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ANKRD26	NM_014915	exon34	c.G5050A	p.D1684N	ACTCATCAGTAGA	.	91.0	4.0	114.0	0.0	.	179	.	.	Atlas-SNP
RET	5979	hgsc.bcm.edu	hg19	10	43610012	43610012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RET	NM_020630	exon11	c.T1964C	p.F655S	CTGCCTTCTGCAT	.	95.0	4.0	101.0	0.0	.	916	.	.	Atlas-SNP
SIRT1	23411	hgsc.bcm.edu	hg19	10	69666641	69666641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SIRT1	NM_012238	exon5	c.A1037G	p.N346S	CCCAGAACATAGA	.	97.0	4.0	137.0	0.0	.	38	.	.	Atlas-SNP
TYSND1	219743	hgsc.bcm.edu	hg19	10	71905706	71905706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TYSND1	NM_173555	exon1	c.G637A	p.V213M	TGGGCACGGCCCC	.	95.0	4.0	44.0	0.0	.	20	.	.	Atlas-SNP
FAM149B1	317662	hgsc.bcm.edu	hg19	10	74992815	74992815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FAM149B1	NM_173348	exon10	c.A1246G	p.T416A	CAGTCCACCAGGA	.	99.0	4.0	101.0	0.0	.	26	.	.	Atlas-SNP
TMEM254	80195	hgsc.bcm.edu	hg19	10	81838495	81838495	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TMEM254	NM_001270370	exon1	c.A40C	p.S14R	CGAGGCAGTCTGT	.	36.0	10.0	39.0	0.0	.	1	.	.	Atlas-SNP
CYP2C9	1559	hgsc.bcm.edu	hg19	10	96707544	96707544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CYP2C9	NM_000771	exon4	c.T490C	p.C164R	TCACCCTGTGATC	.	91.0	4.0	122.0	0.0	.	82	.	.	Atlas-SNP
BLNK	29760	hgsc.bcm.edu	hg19	10	97966769	97966769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	BLNK	NM_013314	exon11	c.A815G	p.E272G	TTACCTTCACAAA	.	80.0	4.0	114.0	0.0	.	46	.	.	Atlas-SNP
SLIT1	6585	hgsc.bcm.edu	hg19	10	98824597	98824597	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SLIT1	NM_003061	exon6	c.A522G	p.E174E	GGCCCCTTCCTCA	.	77.0	4.0	70.0	0.0	.	154	.	.	Atlas-SNP
WNT8B	7479	hgsc.bcm.edu	hg19	10	102239648	102239648	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	WNT8B	NM_003393	exon3	c.C120T	p.S40S	TTACTCCAGCAGT	.	71.0	4.0	82.0	0.0	.	31	.	.	Atlas-SNP
KCNIP2	30819	hgsc.bcm.edu	hg19	10	103588904	103588904	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KCNIP2	NM_014591	exon4	c.T321C	p.G107G	CTCCAGACCCTCA	.	65.0	5.0	89.0	0.0	.	45	.	.	Atlas-SNP
MXI1	4601	hgsc.bcm.edu	hg19	10	112038992	112038992	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MXI1	NM_130439	exon4	c.A492G	p.G164G	ACTAGGACCAGAC	.	99.0	4.0	119.0	0.0	.	17	.	.	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	hg19	10	117061550	117061550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ATRNL1	NM_207303	exon17	c.T2815C	p.S939P	ACCTGCTCCCGTA	.	67.0	4.0	75.0	0.0	.	219	.	.	Atlas-SNP
EIF3A	8661	hgsc.bcm.edu	hg19	10	120832562	120832562	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EIF3A	NM_003750	exon4	c.T381C	p.V127V	TAGGAGAACACTA	.	42.0	4.0	47.0	0.0	.	142	.	.	Atlas-SNP
MCMBP	79892	hgsc.bcm.edu	hg19	10	121595143	121595143	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MCMBP	NM_024834	exon14	c.C1622G	p.S541X	ACCGCTGAGAGAA	.	83.0	25.0	92.0	0.0	.	49	.	.	Atlas-SNP
ADAM8	101	hgsc.bcm.edu	hg19	10	135085698	135085698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ADAM8	NM_001164489	exon10	c.A956G	p.Q319R	CTCACCTGGTTCA	.	74.0	4.0	88.0	0.0	.	41	.	.	Atlas-SNP
AP2A2	161	hgsc.bcm.edu	hg19	11	992507	992507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	AP2A2	NM_001242837	exon11	c.T1277G	p.L426R	AGGTGCTGAAGGT	.	100.0	4.0	81.0	0.0	.	50	.	.	Atlas-SNP
AP2A2	161	hgsc.bcm.edu	hg19	11	1000575	1000575	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	AP2A2	NM_001242837	exon15	c.T2103C	p.P701P	CGCTCCTGGCTCC	.	20.0	4.0	20.0	0.0	.	50	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1093299	1093299	+	Silent	SNP	G	G	A	rs113492997	alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MUC2	NM_002457	exon30	c.G5118A	p.T1706T	CACTACGGTGACC	.	67.0	5.0	50.0	0.0	.	614	.	.	Atlas-SNP
TRIM6-TRIM34	445372	hgsc.bcm.edu	hg19	11	5664784	5664784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TRIM6-TRIM34	NM_001003819	exon14	c.G2374A	p.D792N	TTCCTCGACTATG	.	218.0	13.0	222.0	0.0	.	68	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	20127228	20127228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NAV2	NM_001244963	exon37	c.C6973T	p.L2325F	CATCACCTCAACC	.	97.0	4.0	100.0	0.0	.	255	.	.	Atlas-SNP
HIPK3	10114	hgsc.bcm.edu	hg19	11	33308364	33308364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HIPK3	NM_001048200	exon2	c.A404G	p.D135G	AGTTGGATAATCA	.	93.0	5.0	103.0	0.0	.	92	.	.	Atlas-SNP
ALKBH3	221120	hgsc.bcm.edu	hg19	11	43940662	43940662	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ALKBH3	NM_139178	exon9	c.A744G	p.E248E	CATGGAAGGAGCG	.	67.0	4.0	66.0	0.0	.	33	.	.	Atlas-SNP
PHF21A	51317	hgsc.bcm.edu	hg19	11	45958088	45958088	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PHF21A	NM_001101802	exon16	c.T1638C	p.P546P	AGTTCCAGGCCAT	.	100.0	4.0	80.0	0.0	.	107	.	.	Atlas-SNP
ARHGAP1	392	hgsc.bcm.edu	hg19	11	46703710	46703710	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ARHGAP1	NM_004308	exon5	c.C340G	p.Q114E	CGTACTGGTCCAG	.	190.0	37.0	163.0	0.0	.	27	.	.	Atlas-SNP
FAM111B	374393	hgsc.bcm.edu	hg19	11	58893058	58893058	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FAM111B	NM_198947	exon4	c.G1488A	p.V496V	TATGGTGGGTAAA	.	224.0	54.0	240.0	0.0	.	84	.	.	Atlas-SNP
EML3	256364	hgsc.bcm.edu	hg19	11	62370679	62370679	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EML3	NM_153265	exon20	c.T2298C	p.Y766Y	GCTCTCATAGCGA	.	84.0	4.0	58.0	0.0	.	61	.	.	Atlas-SNP
ATL3	25923	hgsc.bcm.edu	hg19	11	63398635	63398635	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ATL3	NM_015459	exon12	c.G1416A	p.L472L	GTTGAACAACTGG	.	177.0	44.0	139.0	0.0	.	31	.	.	Atlas-SNP
PLCB3	5331	hgsc.bcm.edu	hg19	11	64023957	64023957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLCB3	NM_000932	exon9	c.T808C	p.S270P	CGGCCCTCCCAGG	.	248.0	10.0	177.0	0.0	.	103	.	.	Atlas-SNP
KCNK4	50801	hgsc.bcm.edu	hg19	11	64060660	64060660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KCNK4	NM_033310	exon2	c.A170G	p.E57G	ACCAGGAGCTGGG	.	148.0	6.0	106.0	0.0	.	22	.	.	Atlas-SNP
RPS6KB2	6199	hgsc.bcm.edu	hg19	11	67200857	67200857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RPS6KB2	NM_003952	exon10	c.T845C	p.I282T	AGATCATCAGGGG	.	90.0	4.0	54.0	0.0	.	92	.	.	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	hg19	11	71249121	71249121	+	Missense_Mutation	SNP	C	C	G	rs200585722	bycluster	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KRTAP5-8	NM_021046	exon1	c.C20G	p.S7C	GCTGCTCTGGAGG	.	207.0	21.0	176.0	0.0	.	28	.	.	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73020389	73020389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ARHGEF17	NM_014786	exon1	c.A706T	p.I236F	TCCTCCATCGCCG	.	268.0	36.0	216.0	0.0	.	117	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78482151	78482151	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_001098816	exon18	c.A2425T	p.R809X	TACATCTGCCGTT	.	175.0	35.0	111.0	0.0	.	.	.	.	Atlas-SNP
C11orf82	220042	hgsc.bcm.edu	hg19	11	82644461	82644461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	C11orf82	NM_145018	exon6	c.C2081T	p.T694I	AGATTACCAAAAA	.	72.0	34.0	80.0	0.0	.	71	.	.	Atlas-SNP
CCDC67	159989	hgsc.bcm.edu	hg19	11	93088638	93088638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CCDC67	NM_181645	exon3	c.A131G	p.E44G	CTTTGGAGACACG	.	149.0	6.0	106.0	0.0	.	57	.	.	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825422	95825422	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MAML2	NM_032427	exon2	c.G1773A	p.Q591Q	TTGCTGCTGTTGC	.	201.0	12.0	152.0	0.0	.	94	.	.	Atlas-SNP
MMP3	4314	hgsc.bcm.edu	hg19	11	102713260	102713260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MMP3	NM_002422	exon3	c.T401A	p.V134D	TTCTCAACAGCAG	.	178.0	39.0	154.0	0.0	.	60	.	.	Atlas-SNP
ALKBH8	91801	hgsc.bcm.edu	hg19	11	107420510	107420510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ALKBH8	NM_138775	exon7	c.A740G	p.D247G	ATCTCATCCTCAA	.	91.0	4.0	59.0	0.0	.	88	.	.	Atlas-SNP
POU2AF1	5450	hgsc.bcm.edu	hg19	11	111224991	111224991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	POU2AF1	NM_006235	exon5	c.T766C	p.F256L	CCTAAAAGCCTTC	.	100.0	4.0	103.0	0.0	.	23	.	.	Atlas-SNP
VWA5A	4013	hgsc.bcm.edu	hg19	11	124013281	124013281	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	VWA5A	NM_014622	exon16	c.2154+2T>A	.	CCGAGGTAAGATT	.	69.0	4.0	49.0	0.0	.	102	.	.	Atlas-SNP
OR8D2	283160	hgsc.bcm.edu	hg19	11	124189739	124189739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	OR8D2,NS,lymphoid_neoplasm,0,1	OR8D2	NM_001002918	exon1	c.G355A	p.E119K	CATATTCCATGGC	.	45.0	22.0	55.0	0.0	.	65	.	.	Atlas-SNP
PRDM10	56980	hgsc.bcm.edu	hg19	11	129825426	129825426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PRDM10	NM_020228	exon4	c.A275G	p.Q92R	GCATCCTGTTGGA	.	97.0	4.0	105.0	0.0	.	120	.	.	Atlas-SNP
NCAPD3	23310	hgsc.bcm.edu	hg19	11	134072793	134072793	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NCAPD3	NM_015261	exon13	c.C1533T	p.S511S	TTGGTAGGAAAAA	.	80.0	8.0	109.0	0.0	.	141	.	.	Atlas-SNP
CSDA	8531	hgsc.bcm.edu	hg19	12	10853935	10853935	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CSDA	NM_003651	exon9	c.A1071G	p.A357A	AGTTGGTGCTTCA	.	102.0	5.0	86.0	0.0	.	35	.	.	Atlas-SNP
WBP11	51729	hgsc.bcm.edu	hg19	12	14954258	14954258	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	WBP11	NM_016312	exon2	c.A60G	p.Q20Q	ACGGGCTTGGTCT	.	97.0	4.0	110.0	0.0	.	66	.	.	Atlas-SNP
PLCZ1	89869	hgsc.bcm.edu	hg19	12	18876412	18876412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLCZ1	NM_033123	exon4	c.T200C	p.I67T	TGCGTGATAATTC	.	69.0	4.0	92.0	0.0	.	107	.	.	Atlas-SNP
ITPR2	3709	hgsc.bcm.edu	hg19	12	26647249	26647249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ITPR2	NM_002223	exon39	c.A5207T	p.D1736V	ATCTTATCTGAAT	.	64.0	19.0	54.0	0.0	.	270	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32458899	32458899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	BICD1	NM_001714	exon4	c.A848G	p.D283G	ATGATGACAAAAT	.	70.0	4.0	77.0	0.0	.	89	.	.	Atlas-SNP
DNAJC22	79962	hgsc.bcm.edu	hg19	12	49743308	49743308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DNAJC22	NM_024902	exon2	c.T653A	p.F218Y	GCTCCTTCTTGAA	.	121.0	8.0	129.0	0.0	.	29	.	.	Atlas-SNP
LARP4	113251	hgsc.bcm.edu	hg19	12	50822863	50822863	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	LARP4,caecum,carcinoma,0,1	LARP4	NM_001170808	exon3	c.T312C	p.Y104Y	AATATATGATGTT	.	33.0	2.0	52.0	0.0	.	58	.	.	Atlas-SNP
KRT77	374454	hgsc.bcm.edu	hg19	12	53086340	53086340	+	Missense_Mutation	SNP	A	A	C	rs200694410		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.,1	KRT77	NM_175078	exon7	c.T1292G	p.L431R	TCCTCCAGGTCCT	.	49.0	5.0	48.0	0.0	.	58	.	.	Atlas-SNP
SPRYD3	84926	hgsc.bcm.edu	hg19	12	53462069	53462069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SPRYD3	NM_032840	exon7	c.A713G	p.K238R	TTGCCCTTCCCTA	.	73.0	4.0	82.0	0.0	.	29	.	.	Atlas-SNP
MDM2	4193	hgsc.bcm.edu	hg19	12	69207366	69207366	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	MDM2_ENST00000462284,bladder,carcinoma,0,2	MDM2	NM_002392	exon3	c.A132G	p.L44L	GTTATTAAAGTCT	.	65.0	4.0	106.0	0.0	.	92	.	.	Atlas-SNP
POC1B	282809	hgsc.bcm.edu	hg19	12	89865461	89865461	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	POC1B	NM_172240	exon6	c.T606C	p.A202A	TGCTGAAGCTATG	.	90.0	4.0	83.0	0.0	.	41	.	.	Atlas-SNP
POC1B	282809	hgsc.bcm.edu	hg19	12	89885846	89885846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	POC1B	NM_172240	exon4	c.A319G	p.S107G	CTACACTTCGAAC	.	82.0	4.0	89.0	0.0	.	41	.	.	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94697585	94697585	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLXNC1	NM_005761	exon29	c.A4440G	p.E1480E	CAAAGAAGAAGTA	.	81.0	4.0	87.0	0.0	.	135	.	.	Atlas-SNP
APAF1	317	hgsc.bcm.edu	hg19	12	99056329	99056329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	APAF1	NM_181868	exon6	c.T806C	p.V269A	AGAGTGTTACAGA	.	80.0	4.0	110.0	0.0	.	111	.	.	Atlas-SNP
UHRF1BP1L	23074	hgsc.bcm.edu	hg19	12	100497704	100497704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	UHRF1BP1L	NM_015054	exon3	c.A233G	p.H78R	ATGGGATGTGTTT	.	91.0	4.0	149.0	0.0	.	144	.	.	Atlas-SNP
TDG	6996	hgsc.bcm.edu	hg19	12	104379508	104379508	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TDG	NM_003211	exon9	c.1090+2T>C	.	GCTAAGTATGGTT	.	93.0	27.0	129.0	0.0	.	43	.	.	Atlas-SNP
RIC8B	55188	hgsc.bcm.edu	hg19	12	107237670	107237670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RIC8B	NM_018157	exon6	c.T1106C	p.L369S	TCAGCTTATTAAC	.	57.0	4.0	49.0	0.0	.	51	.	.	Atlas-SNP
MTERFD3	80298	hgsc.bcm.edu	hg19	12	107371779	107371779	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MTERFD3	NM_001033050	exon3	c.T714C	p.G238G	GGTGAAACCTTGC	.	71.0	5.0	71.0	0.0	.	32	.	.	Atlas-SNP
ATXN2	6311	hgsc.bcm.edu	hg19	12	111926327	111926327	+	Silent	SNP	T	T	C	rs138912353	alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ATXN2	NM_002973	exon15	c.A2673G	p.A891A	TTTACATGCTGGG	.	181.0	54.0	198.0	0.0	.	99	.	T|1.000;G|0.000	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112613662	112613662	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_001109662	exon66	c.C11070T	p.V3690V	CTCAGGGACTGGT	.	141.0	34.0	176.0	0.0	.	.	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122252024	122252024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SETD1B	NM_015048	exon6	c.T1903C	p.S635P	CAGTCCTCAGGCG	.	86.0	4.0	84.0	0.0	.	105	.	.	Atlas-SNP
PIWIL1	9271	hgsc.bcm.edu	hg19	12	130834496	130834496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PIWIL1	NM_004764	exon9	c.T1028C	p.L343S	GCTTCTTAGAATA	.	45.0	4.0	63.0	0.0	.	157	.	.	Atlas-SNP
PARP4	143	hgsc.bcm.edu	hg19	13	25044076	25044076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PARP4	NM_006437	exon16	c.T2002C	p.C668R	AGCCACACACAGC	.	91.0	4.0	75.0	0.0	.	142	.	.	Atlas-SNP
RNF6	6049	hgsc.bcm.edu	hg19	13	26788190	26788190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RNF6	NM_183043	exon5	c.A1829G	p.Q610R	TCAATCTGCTCTT	.	99.0	4.0	116.0	0.0	.	68	.	.	Atlas-SNP
B3GALTL	145173	hgsc.bcm.edu	hg19	13	31822032	31822032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	B3GALTL	NM_194318	exon6	c.T388C	p.F130L	ATTTTCTTCTGTG	.	85.0	4.0	90.0	0.0	.	48	.	.	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	hg19	13	36348674	36348674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DCLK1	NM_001195416	exon13	c.T1300A	p.X434K	CTTATTAAAAGGG	.	102.0	28.0	130.0	0.0	.	350	.	.	Atlas-SNP
RCBTB2	1102	hgsc.bcm.edu	hg19	13	49070340	49070340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RCBTB2	NM_001268	exon14	c.A1502G	p.K501R	TCATACTTCACCG	.	69.0	4.0	76.0	0.0	.	62	.	.	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	hg19	13	60557952	60557952	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DIAPH3	NM_001042517	exon13	c.A1431G	p.P477P	GAAGTCTGGATCC	.	65.0	4.0	86.0	0.0	.	139	.	.	Atlas-SNP
ABCC4	10257	hgsc.bcm.edu	hg19	13	95858953	95858953	+	Missense_Mutation	SNP	C	C	T	rs377022090		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ABCC4	NM_005845	exon8	c.G994A	p.V332M	CAAACACGATGAT	.	76.0	26.0	95.0	0.0	.	248	.	.	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	hg19	13	96642227	96642227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	UGGT2	NM_020121	exon8	c.G931A	p.D311N	CTATACCTTGTAG	.	76.0	23.0	54.0	0.0	.	127	.	.	Atlas-SNP
IPO5	3843	hgsc.bcm.edu	hg19	13	98645235	98645235	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	IPO5	NM_002271	exon10	c.T813C	p.P271P	GCGTCCTCACTTG	.	80.0	4.0	97.0	0.0	.	90	.	.	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109661386	109661386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.,9	MYO16	NM_001198950	exon22	c.T2584C	p.F862L	TTGGACTTTTTTT	.	28.0	2.0	42.0	0.0	.	285	.	.	Atlas-SNP
OR11H2	79334	hgsc.bcm.edu	hg19	14	20181616	20181616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_001197287	exon2	c.C460A	p.H154N	AGAGATGCCCAGT	.	414.0	158.0	372.0	0.0	.	.	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20853228	20853228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TEP1	NM_007110	exon21	c.A3023G	p.E1008G	ATCACCTCCATCT	.	107.0	5.0	64.0	0.0	.	224	.	.	Atlas-SNP
ARHGAP5	394	hgsc.bcm.edu	hg19	14	32560165	32560165	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ARHGAP5	NM_001173	exon2	c.A290T	p.E97V	AAACAGAGTTCAT	.	68.0	16.0	89.0	0.0	.	166	.	.	Atlas-SNP
SPTSSA	171546	hgsc.bcm.edu	hg19	14	34931375	34931375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_138288	exon1	c.G39A	p.M13I	CCAGGACATCTGC	.	149.0	25.0	120.0	0.0	.	.	.	.	Atlas-SNP
KTN1	3895	hgsc.bcm.edu	hg19	14	56138558	56138558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KTN1	NM_001079521	exon37	c.A3494G	p.K1165R	AATGGAAAGTTAA	.	99.0	4.0	132.0	0.0	.	147	.	.	Atlas-SNP
PELI2	57161	hgsc.bcm.edu	hg19	14	56645115	56645115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PELI2	NM_021255	exon2	c.A140G	p.K47R	TCTACAAGCGGCC	.	91.0	4.0	106.0	0.0	.	55	.	.	Atlas-SNP
C14orf37	145407	hgsc.bcm.edu	hg19	14	58605485	58605485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	C14orf37	NM_001001872	exon2	c.G592A	p.E198K	CTCCTTCCTGACT	.	94.0	4.0	116.0	0.0	.	87	.	.	Atlas-SNP
PLEKHG3	26030	hgsc.bcm.edu	hg19	14	65208191	65208191	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLEKHG3	NM_015549	exon14	c.C1788T	p.A596A	CCTGGCCCGGCAT	.	61.0	31.0	58.0	0.0	.	89	.	.	Atlas-SNP
GPHN	10243	hgsc.bcm.edu	hg19	14	67243210	67243210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GPHN	NM_001024218	exon3	c.A172G	p.I58V	TACAAGATAGTAC	.	85.0	4.0	108.0	0.0	.	79	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68241773	68241773	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZFYVE26	NM_015346	exon27	c.T5280C	p.P1760P	TGATCTAGGGAGG	.	79.0	4.0	65.0	0.0	.	223	.	.	Atlas-SNP
ELMSAN1	91748	hgsc.bcm.edu	hg19	14	74196575	74196575	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_194278	exon4	c.T1863G	p.P621P	GACGGGAGGGGCG	.	118.0	56.0	98.0	0.0	.	.	.	.	Atlas-SNP
PTGR2	145482	hgsc.bcm.edu	hg19	14	74325597	74325597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PTGR2	NM_152444	exon2	c.G32A	p.R11Q	ATTCTCGACCTGG	.	117.0	5.0	118.0	0.0	.	21	.	.	Atlas-SNP
TDP1	55775	hgsc.bcm.edu	hg19	14	90433726	90433726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TDP1	NM_018319	exon5	c.G619T	p.D207Y	TGCTTTGACGTGG	.	197.0	87.0	271.0	0.0	.	47	.	.	Atlas-SNP
CPSF2	53981	hgsc.bcm.edu	hg19	14	92624139	92624139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CPSF2	NM_017437	exon13	c.T1732C	p.C578R	GAGTGCTGTCGCG	.	119.0	5.0	126.0	0.0	.	63	.	.	Atlas-SNP
C14orf177	283598	hgsc.bcm.edu	hg19	14	99182534	99182534	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	C14orf177	NM_182560	exon3	c.T6C	p.H2H	GATGCATCGGAAA	.	6.0	5.0	0.0	0.0	.	37	.	.	Atlas-SNP
TYRO3	7301	hgsc.bcm.edu	hg19	15	41865543	41865543	+	Missense_Mutation	SNP	G	G	C	rs116540200	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	TYRO3_ENST00000263798,colon,carcinoma,0,3	TYRO3	NM_006293	exon17	c.G2023C	p.G675R	GACTTCGGACTCT	.	102.0	35.0	112.0	0.0	.	169	.	G|0.995;A|0.005	Atlas-SNP
CDAN1	146059	hgsc.bcm.edu	hg19	15	43027504	43027504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CDAN1	NM_138477	exon5	c.G1012A	p.V338M	CAGTCACCATCCT	.	60.0	4.0	53.0	0.0	.	70	.	.	Atlas-SNP
CEP152	22995	hgsc.bcm.edu	hg19	15	49073394	49073394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CEP152	NM_014985	exon12	c.A1576G	p.S526G	CATACCTGGTAAC	.	91.0	4.0	108.0	0.0	.	145	.	.	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	hg19	15	52605952	52605952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MYO5A	NM_000259	exon41	c.G5509A	p.A1837T	CTAGTGCGAGGGA	.	70.0	4.0	74.0	0.0	.	145	.	.	Atlas-SNP
RNF111	54778	hgsc.bcm.edu	hg19	15	59377873	59377873	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RNF111	NM_001270528	exon10	c.A2466G	p.E822E	AATTGAAGCTGGA	.	91.0	5.0	83.0	0.0	.	179	.	.	Atlas-SNP
RORA	6095	hgsc.bcm.edu	hg19	15	60907095	60907095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RORA	NM_002943	exon2	c.A269G	p.K90R	GCACCTTTTCTCA	.	77.0	4.0	103.0	0.0	.	114	.	.	Atlas-SNP
DAPK2	23604	hgsc.bcm.edu	hg19	15	64263741	64263741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DAPK2	NM_014326	exon4	c.T334C	p.F112L	AATCGAAGAGCTC	.	84.0	4.0	83.0	0.0	.	31	.	.	Atlas-SNP
DPP8	54878	hgsc.bcm.edu	hg19	15	65772582	65772582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DPP8	NM_197960	exon11	c.A1322G	p.E441G	GTTGTTTCTTCAT	.	57.0	4.0	84.0	0.0	.	78	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72122595	72122595	+	Missense_Mutation	SNP	G	G	A	rs371514628		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	MYO9A,colon,carcinoma,0,1	MYO9A	NM_006901	exon40	c.C6895T	p.R2299W	GCAACCGAACTAC	.	86.0	19.0	108.0	0.0	.	203	.	.	Atlas-SNP
NEIL1	79661	hgsc.bcm.edu	hg19	15	75641528	75641528	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NEIL1	NM_001256552	exon2	c.A540G	p.P180P	GCTGCCACGCCAT	.	47.0	4.0	51.0	0.0	.	36	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86123972	86123972	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	AKAP13	NM_007200	exon7	c.C2673T	p.D891D	CACTGACTCTTCC	.	73.0	10.0	92.0	0.0	.	394	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101606304	101606304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	LRRK1	NM_024652	exon32	c.T5662C	p.S1888P	GCTGCCTCCGACA	.	116.0	5.0	115.0	0.0	.	310	.	.	Atlas-SNP
CHSY1	22856	hgsc.bcm.edu	hg19	15	101717856	101717856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CHSY1	NM_014918	exon3	c.T2146C	p.W716R	GCCCCCAGCCTTG	.	88.0	4.0	106.0	0.0	.	60	.	.	Atlas-SNP
TARSL2	123283	hgsc.bcm.edu	hg19	15	102224289	102224289	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TARSL2	NM_152334	exon12	c.A1639T	p.T547S	CCACTGTGCAAAA	.	153.0	43.0	154.0	0.0	.	63	.	.	Atlas-SNP
SSTR5	6755	hgsc.bcm.edu	hg19	16	1129760	1129760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SSTR5	NM_001172560	exon2	c.T892C	p.C298R	AACAGCTGTGCCA	.	110.0	6.0	90.0	0.0	.	36	.	.	Atlas-SNP
MEIOB	254528	hgsc.bcm.edu	hg19	16	1884295	1884295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_001163560	exon14	c.G1378A	p.E460K	TTGCCTCAGTAGG	.	84.0	4.0	102.0	0.0	.	.	.	.	Atlas-SNP
EMP2	2013	hgsc.bcm.edu	hg19	16	10626827	10626827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EMP2	NM_001424	exon5	c.T439C	p.W147R	CCACCCACGCCAG	.	69.0	4.0	60.0	0.0	.	21	.	.	Atlas-SNP
TEKT5	146279	hgsc.bcm.edu	hg19	16	10783830	10783830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TEKT5	NM_144674	exon2	c.T617C	p.V206A	TCATGGACCAAAT	.	98.0	4.0	101.0	0.0	.	66	.	.	Atlas-SNP
DCUN1D3	123879	hgsc.bcm.edu	hg19	16	20871607	20871607	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DCUN1D3	NM_173475	exon3	c.A516T	p.E172D	TTTGGCTTCTGTT	.	79.0	4.0	71.0	0.0	.	29	.	.	Atlas-SNP
TAOK2	9344	hgsc.bcm.edu	hg19	16	29998852	29998852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TAOK2	NM_016151	exon16	c.C3259T	p.R1087W	TGGTTGCGGGTTC	.	73.0	31.0	76.0	0.0	.	142	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47695696	47695696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PHKB	NM_000293	exon23	c.T2263C	p.F755L	CCCAACTTCATCA	.	82.0	4.0	95.0	0.0	.	298	.	.	Atlas-SNP
ABCC12	94160	hgsc.bcm.edu	hg19	16	48120709	48120709	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ABCC12	NM_033226	exon26	c.G3657A	p.E1219E	GTGACTCTCAAAG	.	92.0	4.0	73.0	0.0	.	190	.	.	Atlas-SNP
CHD9	80205	hgsc.bcm.edu	hg19	16	53338416	53338416	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CHD9	NM_025134	exon31	c.T6498A	p.S2166S	TTCTTCTTCATCT	.	302.0	21.0	271.0	0.0	.	203	.	.	Atlas-SNP
CHD9	80205	hgsc.bcm.edu	hg19	16	53338419	53338419	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CHD9	NM_025134	exon31	c.A6501T	p.S2167S	TTCTTCATCTTCA	.	292.0	14.0	275.0	0.0	.	203	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53513887	53513887	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RBL2	NM_005611	exon19	c.A2865G	p.E955E	AACAGAACTAAAC	.	95.0	4.0	129.0	0.0	.	115	.	.	Atlas-SNP
NQO1	1728	hgsc.bcm.edu	hg19	16	69748881	69748881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NQO1	NM_000903	exon4	c.A403G	p.K135E	GTCCTTTGTCATA	.	115.0	5.0	89.0	0.0	.	21	.	.	Atlas-SNP
CENPN	55839	hgsc.bcm.edu	hg19	16	81066238	81066238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CENPN	NM_001100625	exon11	c.A1001G	p.D334G	CCCAGGACCCGAG	.	59.0	4.0	75.0	0.0	.	84	.	.	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	hg19	16	81236287	81236287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PKD1L2	NM_001076780	exon6	c.T961C	p.F321L	CAGCAAACACGGT	.	89.0	4.0	85.0	0.0	.	361	.	.	Atlas-SNP
CDH13	1012	hgsc.bcm.edu	hg19	16	83378493	83378493	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CDH13	NM_001220488	exon7	c.T804C	p.N268N	TGTCAATGGCAAA	.	99.0	4.0	111.0	0.0	.	97	.	.	Atlas-SNP
ZNF778	197320	hgsc.bcm.edu	hg19	16	89293512	89293512	+	Silent	SNP	T	T	C	rs376986456	alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF778	NM_001201407	exon7	c.T816C	p.V272V	ACCTGTTGAAATG	.	81.0	4.0	90.0	0.0	.	67	.	.	Atlas-SNP
SPG7	6687	hgsc.bcm.edu	hg19	16	89598432	89598432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SPG7	NM_199367	exon8	c.T1108C	p.F370L	GTGCCCTTCCTGG	.	81.0	4.0	78.0	0.0	.	75	.	.	Atlas-SNP
ASGR1	432	hgsc.bcm.edu	hg19	17	7077757	7077757	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ASGR1	NM_001671	exon6	c.C378T	p.H126H	CTTCACGTGGAGC	.	267.0	90.0	194.0	0.0	.	20	.	.	Atlas-SNP
NEURL4	84461	hgsc.bcm.edu	hg19	17	7219555	7219555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NEURL4	NM_032442	exon29	c.T4576C	p.S1526P	CAGCGGAAGGGGG	.	89.0	4.0	71.0	0.0	.	192	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7671282	7671282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DNAH2	NM_020877	exon22	c.G3740C	p.W1247S	ATGAGTGGAAGAC	.	95.0	4.0	118.0	0.0	.	498	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7671482	7671482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DNAH2	NM_020877	exon23	c.G3838T	p.D1280Y	GCTCAGGACCGAA	.	68.0	5.0	64.0	0.0	.	498	.	.	Atlas-SNP
ALOX12B	242	hgsc.bcm.edu	hg19	17	7984440	7984440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ALOX12B	NM_001139	exon3	c.A418G	p.K140E	CCTGCTTGGCTCT	.	83.0	4.0	78.0	0.0	.	61	.	.	Atlas-SNP
NCOR1	9611	hgsc.bcm.edu	hg19	17	15935796	15935796	+	Silent	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NCOR1	NM_006311	exon46	c.C7137G	p.G2379G	AGTTGAGCCTGAC	.	49.0	25.0	77.0	0.0	.	240	.	.	Atlas-SNP
MFAP4	4239	hgsc.bcm.edu	hg19	17	19288768	19288768	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MFAP4	NM_002404	exon5	c.241-1G>A	.	GAAAACCTGGAGC	.	77.0	4.0	119.0	0.0	.	33	.	.	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21319654	21319654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	.	NM_001194958	exon3	c.G1000A	p.E334K	TTCGAGGAGAAGA	.	152.0	15.0	172.0	0.0	.	.	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27421007	27421007	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MYO18A	NM_078471	exon31	c.T4812C	p.C1604C	CTTCTGACACGAC	.	76.0	4.0	64.0	0.0	.	217	.	.	Atlas-SNP
C17orf75	64149	hgsc.bcm.edu	hg19	17	30662412	30662412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	C17orf75	NM_022344	exon6	c.A599G	p.E200G	ACATCCTCAAACC	.	96.0	4.0	118.0	0.0	.	23	.	.	Atlas-SNP
TAF15	8148	hgsc.bcm.edu	hg19	17	34171800	34171800	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TAF15	NM_139215	exon15	c.A1497G	p.G499G	CCGAGGAGGCTAT	.	66.0	5.0	74.0	0.0	.	46	.	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	hg19	17	38572733	38572733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TOP2A	NM_001067	exon3	c.T209C	p.I70T	TAGTTAATGCCAA	.	73.0	4.0	138.0	0.0	.	124	.	.	Atlas-SNP
KRT26	353288	hgsc.bcm.edu	hg19	17	38926059	38926059	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KRT26	NM_181539	exon5	c.T916C	p.L306L	GTTTTAATTCGGT	.	416.0	32.0	478.0	0.0	.	49	.	.	Atlas-SNP
MAPT	4137	hgsc.bcm.edu	hg19	17	44049306	44049306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MAPT	NM_001123066	exon3	c.C215T	p.A72V	CAACAGCGGAAGG	.	52.0	16.0	48.0	0.0	.	135	.	.	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	hg19	17	45384933	45384933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ITGB3	NM_000212	exon14	c.T2231C	p.L744P	AACTCCTCATCAC	.	113.0	5.0	127.0	0.0	.	157	.	.	Atlas-SNP
HOXB13	10481	hgsc.bcm.edu	hg19	17	46805467	46805467	+	Silent	SNP	C	C	T	rs199561305	by1000genomes;alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HOXB13	NM_006361	exon1	c.G489A	p.L163L	AGGCAACAGGGAG	.	94.0	4.0	104.0	0.0	.	28	.	C|1.000;G|0.000	Atlas-SNP
SCPEP1	59342	hgsc.bcm.edu	hg19	17	55058493	55058493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SCPEP1	NM_021626	exon2	c.G127A	p.V43M	GATTATGTGACGG	.	168.0	49.0	218.0	0.0	.	35	.	.	Atlas-SNP
BRIP1	83990	hgsc.bcm.edu	hg19	17	59871069	59871069	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	BRIP1	NM_032043	exon10	c.A1362G	p.E454E	AAGATATTCAGCG	.	64.0	5.0	68.0	0.0	.	237	.	.	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	hg19	17	65185736	65185736	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HELZ	NM_014877	exon11	c.A833T	p.H278L	GTCTGGTGGGATT	.	146.0	35.0	195.0	0.0	.	160	.	.	Atlas-SNP
ABCA6	23460	hgsc.bcm.edu	hg19	17	67085652	67085652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ABCA6	NM_080284	exon27	c.A3560G	p.E1187G	TTTGCCTCTGGAA	.	73.0	4.0	66.0	0.0	.	210	.	.	Atlas-SNP
ABCA10	10349	hgsc.bcm.edu	hg19	17	67148261	67148261	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ABCA10	NM_080282	exon37	c.A4320G	p.K1440K	TTTCATTTTTATT	.	78.0	4.0	93.0	0.0	.	209	.	.	Atlas-SNP
TMC8	147138	hgsc.bcm.edu	hg19	17	76129494	76129494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TMC8	NM_152468	exon6	c.C539T	p.T180I	CCTTCACCAACAC	.	115.0	5.0	141.0	0.0	.	44	.	.	Atlas-SNP
DLGAP1	9229	hgsc.bcm.edu	hg19	18	3742408	3742408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DLGAP1	NM_001242761	exon6	c.C1277A	p.A426E	AAGCCTGCAGGGT	.	125.0	42.0	148.0	0.0	.	201	.	.	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	hg19	18	14791433	14791433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ANKRD30B	NM_001145029	exon16	c.T1768C	p.Y590H	GATGTGTATTTAC	.	246.0	93.0	314.0	0.0	.	237	.	.	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19095498	19095498	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GREB1L	NM_001142966	exon29	c.C5022T	p.S1674S	GAGCAGCAAGCTG	.	95.0	4.0	129.0	0.0	.	69	.	.	Atlas-SNP
TRAPPC8	22878	hgsc.bcm.edu	hg19	18	29446819	29446819	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TRAPPC8	NM_014939	exon18	c.T2583C	p.C861C	TGTGTGACATCCG	.	59.0	4.0	62.0	0.0	.	126	.	.	Atlas-SNP
KATNAL2	83473	hgsc.bcm.edu	hg19	18	44626699	44626699	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KATNAL2	NM_031303	exon14	c.C1233T	p.I411I	GAAGATCTTTGAT	.	36.0	7.0	47.0	0.0	.	64	.	.	Atlas-SNP
MAPK4	5596	hgsc.bcm.edu	hg19	18	48190780	48190780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MAPK4	NM_002747	exon2	c.A452G	p.K151R	ACCTGAAGCCCGC	.	79.0	4.0	93.0	0.0	.	75	.	.	Atlas-SNP
STARD6	147323	hgsc.bcm.edu	hg19	18	51880863	51880863	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	STARD6	NM_139171	exon1	c.T81G	p.V27V	AGTTTTAACCACT	.	170.0	55.0	192.0	0.0	.	19	.	.	Atlas-SNP
ATP8B1	5205	hgsc.bcm.edu	hg19	18	55351288	55351288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ATP8B1	NM_005603	exon15	c.T1610C	p.V537A	ACCATGACTGTGT	.	93.0	6.0	62.0	0.0	.	126	.	.	Atlas-SNP
PTBP1	5725	hgsc.bcm.edu	hg19	19	810762	810762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PTBP1	NM_002819	exon15	c.T1610C	p.L537P	TTGACCTGCACAA	.	39.0	4.0	56.0	0.0	.	43	.	.	Atlas-SNP
MED16	10025	hgsc.bcm.edu	hg19	19	868154	868154	+	Missense_Mutation	SNP	A	A	G	rs372252782		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MED16	NM_005481	exon16	c.T2581C	p.S861P	TGGGAGAGTGGTG	.	80.0	4.0	92.0	0.0	.	61	.	.	Atlas-SNP
GPX4	2879	hgsc.bcm.edu	hg19	19	1104930	1104930	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GPX4	NM_001039848	exon1	c.195+2T>C	.	ACCCGGTGCGCGC	.	88.0	4.0	93.0	0.0	.	9	.	.	Atlas-SNP
RAX2	84839	hgsc.bcm.edu	hg19	19	3771558	3771558	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RAX2	NM_032753	exon2	c.A183G	p.A61A	CTTGGCTGCCAGC	.	76.0	4.0	62.0	0.0	.	4	.	.	Atlas-SNP
PLIN4	729359	hgsc.bcm.edu	hg19	19	4510594	4510594	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLIN4	NM_001080400	exon3	c.G3336A	p.G1112G	GGCGGCCCCTTGG	.	89.0	27.0	104.0	0.0	.	191	.	.	Atlas-SNP
EMR1	2015	hgsc.bcm.edu	hg19	19	6921786	6921786	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EMR1	NM_001256253	exon14	c.A1683G	p.R561R	TGGAAGATGGACA	.	96.0	4.0	111.0	0.0	.	153	.	.	Atlas-SNP
ZNF266	10781	hgsc.bcm.edu	hg19	19	9528560	9528560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF266	NM_001271314	exon9	c.T59C	p.L20P	GAGATCAGACTGG	.	91.0	4.0	96.0	0.0	.	65	.	.	Atlas-SNP
DNM2	1785	hgsc.bcm.edu	hg19	19	10906847	10906847	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DNM2	NM_004945	exon10	c.T1307G	p.I436S	AGCTAATCAATAC	.	138.0	42.0	162.0	0.0	.	175	.	.	Atlas-SNP
PIK3R2	5296	hgsc.bcm.edu	hg19	19	18279290	18279290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PIK3R2	NM_005027	exon14	c.T1742C	p.L581P	GGTGGCTCACCCA	.	54.0	5.0	53.0	0.0	.	48	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36210419	36210419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MLL4	NM_014727	exon2	c.C412T	p.R138C	TCCCTGCGCTCTG	.	51.0	4.0	68.0	0.0	.	229	.	.	Atlas-SNP
ZNF829	374899	hgsc.bcm.edu	hg19	19	37383205	37383205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF829	NM_001171979	exon6	c.A731G	p.K244R	AAGGTCTTTCCAC	.	60.0	4.0	59.0	0.0	.	70	.	.	Atlas-SNP
ZNF404	342908	hgsc.bcm.edu	hg19	19	44384170	44384170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF404	NM_001033719	exon1	c.T119C	p.V40A	AATGAGACCAAGT	.	92.0	4.0	76.0	0.0	.	46	.	.	Atlas-SNP
ZFP112	7771	hgsc.bcm.edu	hg19	19	44831614	44831614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZFP112	NM_001083335	exon5	c.A2714G	p.H905R	TTTCTGTGTAGAT	.	58.0	4.0	79.0	0.0	.	219	.	.	Atlas-SNP
CLPTM1	1209	hgsc.bcm.edu	hg19	19	45488528	45488528	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CLPTM1	NM_001294	exon6	c.A639G	p.T213T	GCTGACAGGAGAG	.	75.0	34.0	80.0	0.0	.	109	.	.	Atlas-SNP
CD3EAP	10849	hgsc.bcm.edu	hg19	19	45912491	45912491	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CD3EAP	NM_012099	exon3	c.A1265C	p.K422T	CCACCAAGAAGAA	.	47.0	4.0	51.0	0.0	.	27	.	.	Atlas-SNP
CD3EAP	10849	hgsc.bcm.edu	hg19	19	45912492	45912492	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CD3EAP	NM_012099	exon3	c.G1266C	p.K422N	CACCAAGAAGAAG	.	50.0	6.0	51.0	0.0	.	27	.	.	Atlas-SNP
SYMPK	8189	hgsc.bcm.edu	hg19	19	46319817	46319817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SYMPK	NM_004819	exon25	c.T3277C	p.S1093P	TGATGGAGTTAGG	.	106.0	5.0	108.0	0.0	.	104	.	.	Atlas-SNP
IGFL1	374918	hgsc.bcm.edu	hg19	19	46733725	46733725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	IGFL1	NM_198541	exon3	c.A274G	p.N92D	CTGATAAACCAGA	.	65.0	4.0	82.0	0.0	.	10	.	.	Atlas-SNP
CALM3	808	hgsc.bcm.edu	hg19	19	47111479	47111479	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CALM3	NM_005184	exon3	c.T60C	p.F20F	CCTCTTTGACAAG	.	63.0	4.0	87.0	0.0	.	9	.	.	Atlas-SNP
EHD2	30846	hgsc.bcm.edu	hg19	19	48219967	48219967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EHD2	NM_014601	exon2	c.T98A	p.L33Q	CGAAGCTGCTGCC	.	135.0	37.0	178.0	0.0	.	59	.	.	Atlas-SNP
SPHK2	56848	hgsc.bcm.edu	hg19	19	49132828	49132828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SPHK2	NM_020126	exon7	c.A1763G	p.E588G	CCATGGAGCGTGG	.	62.0	4.0	46.0	0.0	.	62	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657920	49657920	+	Missense_Mutation	SNP	C	C	T	rs200730671		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HRC	NM_002152	exon1	c.G575A	p.G192E	TCTTCTCCTTCAT	.	137.0	7.0	150.0	0.0	.	85	.	.	Atlas-SNP
ZNF320	162967	hgsc.bcm.edu	hg19	19	53384894	53384894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF320	NM_207333	exon4	c.A485G	p.K162R	TCACATTTGTAAG	.	68.0	4.0	96.0	0.0	.	67	.	.	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	hg19	19	55591536	55591536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EPS8L1	NM_133180	exon6	c.T319C	p.C107R	GTGCGCTGTGACG	.	70.0	4.0	55.0	0.0	.	122	.	.	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	hg19	19	55592800	55592800	+	Silent	SNP	C	C	A	rs146217963	alternate_allele	TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	EPS8L1	NM_133180	exon8	c.C714A	p.A238A	CTCGGCCTCCCCG	.	95.0	38.0	88.0	0.0	.	122	.	C|1.000;G|0.000	Atlas-SNP
HSPBP1	23640	hgsc.bcm.edu	hg19	19	55790905	55790905	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	HSPBP1,NS,carcinoma,0,1	HSPBP1	NM_012267	exon2	c.A72C	p.S24S	GCCCCCTGAAGAG	.	7.0	3.0	8.0	0.0	.	24	.	.	Atlas-SNP
ZNF787	126208	hgsc.bcm.edu	hg19	19	56599440	56599440	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF787	NM_001002836	exon3	c.C1101G	p.D367E	GGCCTCGTCGTCG	.	5.0	5.0	2.0	0.0	.	20	.	.	Atlas-SNP
ZNF582	147948	hgsc.bcm.edu	hg19	19	56896375	56896375	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF582	NM_144690	exon5	c.A411G	p.R137R	GAAATGTCTGTCT	.	96.0	4.0	112.0	0.0	.	56	.	.	Atlas-SNP
TASP1	55617	hgsc.bcm.edu	hg19	20	13539657	13539657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TASP1	NM_017714	exon8	c.A673G	p.K225E	TGACCTTCTCACT	.	95.0	4.0	100.0	0.0	.	52	.	.	Atlas-SNP
CST5	1473	hgsc.bcm.edu	hg19	20	23860147	23860147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	CST5	NM_001900	exon1	c.A167G	p.N56S	ACCTTGTTGTACT	.	89.0	4.0	96.0	0.0	.	24	.	.	Atlas-SNP
ACSS1	84532	hgsc.bcm.edu	hg19	20	25004120	25004120	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ACSS1	NM_001252677	exon4	c.G789A	p.L263L	GACGTCCAGATCC	.	66.0	4.0	80.0	0.0	.	46	.	.	Atlas-SNP
NINL	22981	hgsc.bcm.edu	hg19	20	25434263	25434263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NINL	NM_025176	exon24	c.A3973G	p.K1325E	CGGACTTCGTGTT	.	95.0	4.0	122.0	0.0	.	148	.	.	Atlas-SNP
RALGAPB	57148	hgsc.bcm.edu	hg19	20	37202799	37202799	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RALGAPB	NM_020336	exon29	c.A4149G	p.T1383T	ATCTACAACTCTT	.	81.0	4.0	126.0	0.0	.	134	.	.	Atlas-SNP
FAM65C	140876	hgsc.bcm.edu	hg19	20	49221180	49221180	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	FAM65C	NM_080829	exon13	c.1074+2T>C	.	TCACTCACCAGGT	.	58.0	4.0	66.0	0.0	.	87	.	.	Atlas-SNP
HSPA13	6782	hgsc.bcm.edu	hg19	21	15748106	15748106	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HSPA13	NM_006948	exon4	c.A615G	p.T205T	TGCTGCTGTGGGT	.	91.0	4.0	104.0	0.0	.	44	.	.	Atlas-SNP
N6AMT1	29104	hgsc.bcm.edu	hg19	21	30248785	30248785	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	N6AMT1	NM_013240	exon6	c.A567G	p.K189K	CAGACCTTTTGTC	.	90.0	4.0	67.0	0.0	.	31	.	.	Atlas-SNP
GRIK1	2897	hgsc.bcm.edu	hg19	21	31015285	31015285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	GRIK1	NM_175611	exon7	c.A959G	p.E320G	GCCGCTTCAGTCT	.	97.0	4.0	91.0	0.0	.	293	.	.	Atlas-SNP
DNAJC28	54943	hgsc.bcm.edu	hg19	21	34860754	34860754	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	DNAJC28,NS,carcinoma,0,2	DNAJC28	NM_001040192	exon2	c.T947G	p.L316X	ACAATTAAATTAA	.	19.0	4.0	9.0	1.0	.	47	.	.	Atlas-SNP
DNAJC28	54943	hgsc.bcm.edu	hg19	21	34860757	34860757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DNAJC28	NM_001040192	exon2	c.A944T	p.N315I	ATTAAATTAAAAT	.	97.0	9.0	145.0	0.0	.	47	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26157091	26157091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MYO18B	NM_032608	exon2	c.A32G	p.E11G	TGTGGGAGCAGAA	.	107.0	5.0	75.0	0.0	.	322	.	.	Atlas-SNP
BAIAP2L2	80115	hgsc.bcm.edu	hg19	22	38482394	38482394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	BAIAP2L2	NM_025045	exon12	c.T1322C	p.I441T	GGTGCTATGGAGT	.	87.0	10.0	88.0	0.0	.	39	.	.	Atlas-SNP
PACSIN2	11252	hgsc.bcm.edu	hg19	22	43308052	43308052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PACSIN2	NM_007229	exon2	c.A35G	p.E12G	GACACTTCTACTC	.	63.0	4.0	54.0	0.0	.	48	.	.	Atlas-SNP
PNPLA5	150379	hgsc.bcm.edu	hg19	22	44283472	44283472	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PNPLA5	NM_138814	exon5	c.T762C	p.R254R	CCTACCACGTCTC	.	94.0	4.0	64.0	0.0	.	46	.	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	hg19	22	46654318	46654318	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PKDREJ	NM_006071	exon1	c.A4902G	p.S1634S	GAAGCCTGACAGG	.	90.0	4.0	105.0	0.0	.	195	.	.	Atlas-SNP
PPP6R2	9701	hgsc.bcm.edu	hg19	22	50854528	50854528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PPP6R2	NM_001242898	exon6	c.A560G	p.N187S	GGCTGAATGAAGA	.	100.0	27.0	103.0	0.0	.	71	.	.	Atlas-SNP
ODF3B	440836	hgsc.bcm.edu	hg19	22	50969184	50969184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ODF3B	NM_001014440	exon6	c.A638G	p.D213G	GTGTTGTCTTGGG	.	86.0	4.0	54.0	0.0	.	6	.	.	Atlas-SNP
PHEX	5251	hgsc.bcm.edu	hg19	X	22237189	22237189	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PHEX	NM_000444	exon17	c.A1737G	p.G579G	TGTCGGACATGAA	.	72.0	4.0	48.0	0.0	.	95	.	.	Atlas-SNP
PHEX	5251	hgsc.bcm.edu	hg19	X	22265970	22265970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PHEX	NM_000444	exon22	c.T2150C	p.V717A	TCAGGGTCAATGG	.	96.0	4.0	67.0	0.0	.	95	.	.	Atlas-SNP
TAB3	257397	hgsc.bcm.edu	hg19	X	30864763	30864763	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	TAB3	NM_152787	exon9	c.1711-2A>G	.	TCAGGCTAGTAAG	.	72.0	4.0	64.0	0.0	.	82	.	.	Atlas-SNP
RP2	6102	hgsc.bcm.edu	hg19	X	46713254	46713254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	RP2	NM_006915	exon2	c.A446G	p.Q149R	GTTTTCAATGGTA	.	77.0	4.0	57.0	0.0	.	37	.	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48661291	48661291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HDAC6	NM_006044	exon3	c.A107G	p.K36R	ATATTAAAAAGGG	.	85.0	57.0	57.0	0.0	.	111	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53591670	53591670	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	HUWE1	NM_031407	exon51	c.A6894G	p.E2298E	TTCTGCTTCCCCA	.	97.0	4.0	70.0	0.0	.	724	.	.	Atlas-SNP
ACRC	93953	hgsc.bcm.edu	hg19	X	70823976	70823976	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ACRC	NM_052957	exon8	c.A849G	p.E283E	TTCGGAAGCTTCC	.	90.0	4.0	39.0	0.0	.	110	.	.	Atlas-SNP
NKAP	79576	hgsc.bcm.edu	hg19	X	119059318	119059318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NKAP	NM_024528	exon9	c.C1113A	p.N371K	GATCTGGTTCTCT	.	103.0	81.0	60.0	0.0	.	53	.	.	Atlas-SNP
MCF2	4168	hgsc.bcm.edu	hg19	X	138699701	138699701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MCF2	NM_001171876	exon11	c.A1150G	p.T384A	TGAAGGTCCTGCT	.	105.0	5.0	78.0	0.0	.	432	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142716432	142716432	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	SLITRK4	NM_001184750	exon2	c.A2493G	p.Q831Q	AGCTGTTTGCTCC	.	75.0	4.0	67.0	0.0	.	162	.	.	Atlas-SNP
ZNF185	7739	hgsc.bcm.edu	hg19	X	152113989	152113989	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ZNF185	NM_001178106	exon17	c.C1483T	p.R495X	GTCAGACGAGAGA	.	93.0	5.0	42.0	0.0	.	92	.	.	Atlas-SNP
UTY	7404	hgsc.bcm.edu	hg19	Y	15448106	15448106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	UTY	NM_001258249	exon18	c.A2171G	p.K724R	TTCGCCTTCTTAA	.	93.0	4.0	113.0	0.0	.	45	.	.	Atlas-SNP
KIFC2	90990	hgsc.bcm.edu	hg19	8	145697525	145697526	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	KIFC2	NM_145754	exon14	c.1489_1490del	p.497_497del	.	.	120.0	31.0	98.0	0.0	.	53	.	.	Atlas-Indel,Pindel
MLH3	27030	hgsc.bcm.edu	hg19	14	75513956	75513957	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	MLH3	NM_014381	exon2	c.2403_2404del	p.801_802del	.	.	125.0	20.0	175.0	0.0	.	200	.	.	Atlas-Indel,Pindel
PLEKHN1	84069	hgsc.bcm.edu	hg19	1	909846	909855	+	Frame_Shift_Del	DEL	GGGACCCCGG	GGGACCCCGG	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	GGGACCCCGG	GGGACCCCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	PLEKHN1	NM_032129	exon16	c.1726_1735del	p.576_579del	.	.	62.0	16.0	75.0	0.0	.	49	.	.	Atlas-Indel,Pindel
THBS3	7059	hgsc.bcm.edu	hg19	1	155167449	155167450	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	THBS3	NM_007112	exon20	c.2304_2305insT	p.G768fs	.	.	158.0	17.0	109.0	0.0	.	70	.	.	Atlas-INDEL
DNAH14	127602	hgsc.bcm.edu	hg19	1	225273418	225273419	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	DNAH14	NM_001373	exon21	c.3500_3501insA	p.I1167fs	.	.	321.0	53.0	232.0	0.0	.	300	.	.	Atlas-Indel,Pindel
LAMB2	3913	hgsc.bcm.edu	hg19	3	49167709	49167711	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	LAMB2	NM_002292	exon9	c.1179_1181del	p.393_394del	.	.	147.0	33.0	151.0	0.0	.	156	.	.	Atlas-Indel,Pindel
NCOR1	9611	hgsc.bcm.edu	hg19	17	15971227	15971227	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NCOR1	NM_001190440	exon31	c.4771delC	p.H1591fs	.	.	43.0	18.0	108.0	0.0	.	240	.	.	Atlas-Indel,Pindel
NCAM1	4684	hgsc.bcm.edu	hg19	11	112832332	112832363	+	Frame_Shift_Del	DEL	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	NCAM1	NM_001242607	wholegene	.	.	.	.	110.0	33.0	0.0	0.0	.	372	.	.	Pindel
ABLIM1	3983	hgsc.bcm.edu	hg19	10	116232776	116232804	+	Frame_Shift_Del	DEL	GAAGTGTAGAAAGGCTCATAGGTAATAAG	GAAGTGTAGAAAGGCTCATAGGTAATAAG	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	GAAGTGTAGAAAGGCTCATAGGTAATAAG	GAAGTGTAGAAAGGCTCATAGGTAATAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ABLIM1	NM_002313	exon10	c.1208_1236del	p.403_412del	.	.	53.0	10.0	0.0	0.0	.	131	.	.	Pindel
HIST1H2AC	8334	hgsc.bcm.edu	hg19	6	26124631	26124692	+	Frame_Shift_Del	DEL	GTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCGGCTCGCGACAACAAGAAGACTC	GTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCGGCTCGCGACAACAAGAAGACTC	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	GTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCGGCTCGCGACAACAAGAAGACTC	GTACCTGACCGCCGAGATCCTGGAGCTGGCCGGCAACGCGGCTCGCGACAACAAGAAGACTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	HIST1H2AC,NS,carcinoma,0,1	HIST1H2AC	NM_003512	exon1	c.170_231del	p.57_77del	.	.	210.0	14.0	0.0	0.0	.	29	.	.	Pindel
ARID1A	8289	hgsc.bcm.edu	hg19	1	27102114	27102139	+	Frame_Shift_Del	DEL	CCTGGCAGAGAGCACATGGGCATTAG	CCTGGCAGAGAGCACATGGGCATTAG	-	novel		TCGA-G3-A3CG-01A-11D-A20W-10	TCGA-G3-A3CG-10A-01D-A20W-10	CCTGGCAGAGAGCACATGGGCATTAG	CCTGGCAGAGAGCACATGGGCATTAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cfe8bcb2-95a5-43cc-97e1-ee6c7ed87731	d9577f26-985f-433d-becb-50301258d4d6	.	ARID1A	NM_006015	exon19	c.5039_5064del	p.1680_1688del	.	.	134.0	10.0	0.0	0.0	.	842	.	.	Pindel
