Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PRKCZ	5590	hgsc.bcm.edu	hg19	1	2103755	2103755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKCZ	NM_002744	exon13	c.G1213T	p.G405C	GGCCCTGGTGACA	.	104.0	25.0	124.0	0.0	.	84	.	.	Atlas-SNP
CLCN6	1185	hgsc.bcm.edu	hg19	1	11896203	11896203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CLCN6	NM_001286	exon18	c.A1973T	p.K658M	ACATCAAGTTCAA	.	138.0	50.0	149.0	0.0	.	77	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19482082	19482082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UBR4	NM_020765	exon43	c.C6153A	p.F2051L	GAAAAGGAAGGTA	.	244.0	71.0	223.0	0.0	.	415	.	.	Atlas-SNP
RCC1	1104	hgsc.bcm.edu	hg19	1	28861881	28861881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	RCC1,caecum,carcinoma,0,1	RCC1	NM_001048194	exon7	c.G743C	p.R248P	GTGGCCGGCAAGG	.	123.0	43.0	105.0	1.0	.	61	.	.	Atlas-SNP
GJB5	2709	hgsc.bcm.edu	hg19	1	35223387	35223387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GJB5	NM_005268	exon2	c.C456A	p.F152L	CTCATTCTACCCC	.	95.0	29.0	103.0	0.0	.	35	.	.	Atlas-SNP
WDR65	149465	hgsc.bcm.edu	hg19	1	43638463	43638463	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WDR65	NM_152498	exon2	c.T39C	p.G13G	TTTTGGTCTTCGA	.	170.0	27.0	158.0	0.0	.	76	.	.	Atlas-SNP
DMBX1	127343	hgsc.bcm.edu	hg19	1	46972704	46972704	+	Missense_Mutation	SNP	G	G	A	rs150745846		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DMBX1	NM_147192	exon1	c.G22A	p.G8S	GTGAACGGCTACT	.	408.0	142.0	391.0	0.0	.	50	.	G|1.000;A|0.000	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52289359	52289359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NRD1	NM_002525	exon9	c.T1340C	p.M447T	AAAGTCATGTAAT	.	185.0	72.0	202.0	0.0	.	89	.	.	Atlas-SNP
L1TD1	54596	hgsc.bcm.edu	hg19	1	62676374	62676374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	L1TD1	NM_001164835	exon5	c.T1928C	p.L643S	GTGTCTTGGAAAT	.	155.0	48.0	161.0	0.0	.	114	.	.	Atlas-SNP
ANGPTL3	27329	hgsc.bcm.edu	hg19	1	63070352	63070352	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ANGPTL3	NM_014495	exon7	c.C1247C	p.A416A	ATGGTAAATATAA	.	269.0	81.0	259.0	0.0	.	42	.	.	Atlas-SNP
GBP3	2635	hgsc.bcm.edu	hg19	1	89480301	89480301	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GBP3	NM_018284	exon4	c.C357A	p.A119A	GAGGACGGCCAGG	.	297.0	138.0	229.0	0.0	.	53	.	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108322079	108322079	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VAV3	NM_006113	exon3	c.T357A	p.P119P	TGCTATAGGTGTT	.	112.0	39.0	83.0	0.0	.	176	.	.	Atlas-SNP
CELSR2	1952	hgsc.bcm.edu	hg19	1	109795272	109795272	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CELSR2	NM_001408	exon1	c.C2571T	p.G857G	AGGAGGCGACGAT	.	226.0	100.0	158.0	0.0	.	228	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144921895	144921895	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE4DIP	NM_001002811	exon5	c.T1623C	p.F541F	CTCTACAAATTGC	.	418.0	55.0	358.0	0.0	.	817	.	.	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	hg19	1	150437008	150437008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPRD2	NM_015203	exon10	c.A1417G	p.S473G	GGGGTCAGTCCTG	.	57.0	21.0	34.0	0.0	.	189	.	.	Atlas-SNP
PI4KB	5298	hgsc.bcm.edu	hg19	1	151280253	151280253	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PI4KB	NM_002651	exon5	c.G1015T	p.E339X	TGAATTCTCTCTC	.	226.0	105.0	219.0	0.0	.	76	.	.	Atlas-SNP
B4GALT3	8703	hgsc.bcm.edu	hg19	1	161141842	161141842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	B4GALT3	NM_003779	exon8	c.C946A	p.Q316K	CATCTTGCGTCCA	.	143.0	40.0	114.0	0.0	.	39	.	.	Atlas-SNP
SCYL3	57147	hgsc.bcm.edu	hg19	1	169847817	169847817	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCYL3	NM_020423	exon3	c.G309T	p.G103G	ATAGATCCCAGCA	.	391.0	208.0	260.0	0.0	.	116	.	.	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	hg19	1	178269226	178269226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RASAL2	NM_170692	exon3	c.T430C	p.Y144H	CCCGAGTACCCAC	.	86.0	44.0	74.0	0.0	.	334	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186295352	186295352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TPR	NM_003292	exon41	c.G5905A	p.E1969K	CTTCCTCATCCTC	.	140.0	73.0	135.0	0.0	.	441	.	.	Atlas-SNP
GPR25	2848	hgsc.bcm.edu	hg19	1	200843249	200843249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR25	NM_005298	exon1	c.T1084G	p.X362E	TCCTGGTAGCTGC	.	42.0	19.0	37.0	0.0	.	23	.	.	Atlas-SNP
CNTN2	6900	hgsc.bcm.edu	hg19	1	205038645	205038645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CNTN2	NM_005076	exon17	c.A2152G	p.S718G	GGACTCAGCGGAG	.	156.0	36.0	124.0	0.0	.	116	.	.	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	hg19	1	220146578	220146578	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EPRS	NM_004446	exon30	c.4244+2T>C	.	GAAACTACCTTGT	.	135.0	21.0	150.0	0.0	.	140	.	.	Atlas-SNP
LBR	3930	hgsc.bcm.edu	hg19	1	225611703	225611703	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LBR	NM_194442	exon2	c.A75G	p.V25V	AATTTCTACTTCA	.	192.0	46.0	165.0	0.0	.	54	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228469861	228469861	+	Missense_Mutation	SNP	T	T	C	rs189169421	bycluster;by1000genomes;alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	OBSCN_ENST00000359599,NS,carcinoma,0,2	OBSCN	NM_001271223	exon36	c.T9712C	p.F3238L	GTGGTCTTCTCTG	.	303.0	172.0	254.0	0.0	.	2142	.	T|0.999;G|0.001	Atlas-SNP
RAB4A	5867	hgsc.bcm.edu	hg19	1	229431599	229431599	+	Missense_Mutation	SNP	G	G	T	rs141754859	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RAB4A	NM_004578	exon4	c.G232T	p.V78L	AGGTCCGTGACGA	.	125.0	32.0	110.0	0.0	.	29	.	G|1.000;A|0.000	Atlas-SNP
URB2	9816	hgsc.bcm.edu	hg19	1	229779359	229779359	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	URB2	NM_014777	exon5	c.G3714A	p.G1238G	GGTTGGGACGACA	.	253.0	127.0	208.0	0.0	.	152	.	.	Atlas-SNP
MAP10	54627	hgsc.bcm.edu	hg19	1	232941381	232941381	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_019090	exon1	c.G612A	p.L204L	CCTGCTGGACTTC	.	50.0	4.0	31.0	0.0	.	.	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32654298	32654298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BIRC6	NM_016252	exon11	c.A2957C	p.K986T	TTTCTAAAGGAAT	.	37.0	17.0	37.0	0.0	.	838	.	.	Atlas-SNP
SRBD1	55133	hgsc.bcm.edu	hg19	2	45812829	45812829	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SRBD1	NM_018079	exon5	c.A733C	p.I245L	GTATAATGAAGGG	.	104.0	25.0	134.0	0.0	.	107	.	.	Atlas-SNP
STON1	11037	hgsc.bcm.edu	hg19	2	48818838	48818838	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1	NM_001198595	exon4	c.A1977T	p.S659S	TGGATCAGACCAA	.	216.0	36.0	258.0	0.0	.	100	.	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71577282	71577282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF638	NM_014497	exon2	c.G1198A	p.D400N	CATGCTGATGCCC	.	82.0	6.0	58.0	0.0	.	179	.	.	Atlas-SNP
AFF3	3899	hgsc.bcm.edu	hg19	2	100210640	100210640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AFF3	NM_001025108	exon14	c.C1558A	p.Q520K	AGTACTGATTGCT	.	244.0	72.0	279.0	0.0	.	164	.	.	Atlas-SNP
ZC3H8	84524	hgsc.bcm.edu	hg19	2	112989510	112989510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZC3H8	NM_032494	exon7	c.A748C	p.K250Q	AAAACTTACAAGG	.	74.0	24.0	63.0	0.0	.	17	.	.	Atlas-SNP
PTPN18	26469	hgsc.bcm.edu	hg19	2	131117002	131117002	+	Silent	SNP	G	G	T	rs138461234	bycluster;byfrequency;alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PTPN18	NM_014369	exon4	c.G312T	p.T104T	TGCCACGCAAGGA	.	98.0	30.0	119.0	0.0	.	42	.	G|0.996;C|0.004	Atlas-SNP
COBLL1	22837	hgsc.bcm.edu	hg19	2	165542496	165542496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	COBLL1	NM_014900	exon14	c.T3461G	p.L1154R	TGGCTGAGTCTTG	.	93.0	34.0	96.0	0.0	.	122	.	.	Atlas-SNP
GAD1	2571	hgsc.bcm.edu	hg19	2	171713607	171713607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GAD1	NM_000817	exon15	c.A1493G	p.E498G	ACAGAGAAGAATT	.	87.0	25.0	67.0	0.0	.	79	.	.	Atlas-SNP
SP3	6670	hgsc.bcm.edu	hg19	2	174820648	174820648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SP3	NM_003111	exon4	c.A592C	p.N198H	CTTGATTTATACC	.	193.0	63.0	208.0	0.0	.	82	.	.	Atlas-SNP
GTF3C3	9330	hgsc.bcm.edu	hg19	2	197643775	197643775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GTF3C3	NM_012086	exon10	c.T1235C	p.L412P	TCTACTAGTGTTG	.	149.0	47.0	175.0	0.0	.	96	.	.	Atlas-SNP
MPP4	58538	hgsc.bcm.edu	hg19	2	202549803	202549803	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MPP4	NM_033066	exon7	c.G558A	p.G186G	CGCCAGCCCACCG	.	121.0	35.0	95.0	0.0	.	93	.	.	Atlas-SNP
PECR	55825	hgsc.bcm.edu	hg19	2	216923626	216923626	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PECR	NM_018441	exon4	c.A498T	p.P166P	AGCTAATGGAAAT	.	192.0	66.0	202.0	0.0	.	22	.	.	Atlas-SNP
CHPF	79586	hgsc.bcm.edu	hg19	2	220406586	220406586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CHPF	NM_024536	exon2	c.G640A	p.G214S	GGTGGCCAGTTAG	.	125.0	39.0	68.0	0.0	.	56	.	.	Atlas-SNP
UGT1A9	54600	hgsc.bcm.edu	hg19	2	234581246	234581246	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UGT1A9	NM_021027	exon1	c.T666A	p.R222R	CCACCGTTTTTTC	.	341.0	117.0	414.0	0.0	.	79	.	.	Atlas-SNP
UGT1A9	54600	hgsc.bcm.edu	hg19	2	234581248	234581248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UGT1A9	NM_021027	exon1	c.T668A	p.F223Y	ACCGTTTTTTCAA	.	336.0	113.0	411.0	0.0	.	79	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4776907	4776907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITPR1	NM_001168272	exon43	c.T5368C	p.C1790R	GTTCAGTGTCACC	.	101.0	39.0	135.0	0.0	.	659	.	.	Atlas-SNP
ARPP21	10777	hgsc.bcm.edu	hg19	3	35763321	35763321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARPP21	NM_016300	exon14	c.A1220C	p.K407T	TGTCCAAAGCAGG	.	206.0	47.0	255.0	0.0	.	153	.	.	Atlas-SNP
PLCD1	5333	hgsc.bcm.edu	hg19	3	38061825	38061825	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PLCD1	NM_001130964	exon2	c.A116T	p.D39V	TGTAGATCCTCAT	.	100.0	32.0	124.0	0.0	.	87	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	CTNNB1,gallbladder,other,-1,1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	329.0	98.0	398.0	0.0	.	4904	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	GAATCCATTCTGG	.	330.0	96.0	382.0	0.0	.	4904	.	.	Atlas-SNP
MANF	7873	hgsc.bcm.edu	hg19	3	51426503	51426503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MANF	NM_006010	exon4	c.G532A	p.A178T	GCCAGTGCACGGA	.	100.0	41.0	94.0	0.0	.	8	.	.	Atlas-SNP
ITIH1	3697	hgsc.bcm.edu	hg19	3	52823733	52823733	+	Silent	SNP	G	G	C	rs145442481	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITIH1	NM_002215	exon19	c.G2184C	p.T728T	CGGCACGTACTTC	.	110.0	40.0	112.0	0.0	.	108	.	G|1.000;A|0.000	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	58141694	58141694	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FLNB	NM_001164317	exon42	c.C6873G	p.Y2291X	TAACTACGAGGTG	.	69.0	20.0	75.0	0.0	.	430	.	.	Atlas-SNP
KPNA1	3836	hgsc.bcm.edu	hg19	3	122146558	122146558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KPNA1	NM_002264	exon13	c.T1256C	p.L419P	TCTACTAGGTACC	.	55.0	24.0	54.0	0.0	.	42	.	.	Atlas-SNP
C3orf79	152118	hgsc.bcm.edu	hg19	3	153202472	153202472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C3orf79	NM_001101337	exon1	c.T127C	p.Y43H	TTGCTTTACAAGG	.	138.0	45.0	152.0	0.0	.	13	.	.	Atlas-SNP
SLC2A2	6514	hgsc.bcm.edu	hg19	3	170723139	170723139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC2A2	NM_000340	exon7	c.T898C	p.Y300H	GTCGGTAGCTGGA	.	198.0	65.0	215.0	0.0	.	71	.	.	Atlas-SNP
EIF4G1	1981	hgsc.bcm.edu	hg19	3	184040633	184040633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EIF4G1	NM_001194946	exon14	c.A1841G	p.E614G	ACCTAGAGGAGAA	.	119.0	33.0	95.0	0.0	.	151	.	.	Atlas-SNP
BCL6	604	hgsc.bcm.edu	hg19	3	187449531	187449531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BCL6	NM_001134738	exon3	c.G349T	p.V117F	CCACAACATGCTC	.	180.0	65.0	155.0	0.0	.	107	.	.	Atlas-SNP
DHX15	1665	hgsc.bcm.edu	hg19	4	24529578	24529578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	DHX15,colon,carcinoma,0,1	DHX15	NM_001358	exon14	c.A2357C	p.K786T	TGAAGTTTGGCAA	.	173.0	65.0	141.0	0.0	.	69	.	.	Atlas-SNP
LIAS	11019	hgsc.bcm.edu	hg19	4	39460742	39460742	+	Missense_Mutation	SNP	C	C	A	rs372288500	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LIAS	NM_194451	exon1	c.C5A	p.S2Y	AAATGTCTCTACG	.	59.0	11.0	52.0	0.0	.	26	.	.	Atlas-SNP
LEF1	51176	hgsc.bcm.edu	hg19	4	109000723	109000723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LEF1	NM_016269	exon7	c.G770A	p.G257D	GGGATGCCAGTTG	.	141.0	58.0	174.0	0.0	.	93	.	.	Atlas-SNP
VEGFC	7424	hgsc.bcm.edu	hg19	4	177608449	177608449	+	Missense_Mutation	SNP	G	G	C	rs373146571	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VEGFC	NM_005429	exon6	c.C1037G	p.T346S	GGGCAGGTTCTTT	.	230.0	89.0	257.0	0.0	.	94	.	.	Atlas-SNP
KIAA0947	23379	hgsc.bcm.edu	hg19	5	5454677	5454677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0947	NM_015325	exon11	c.T617C	p.L206P	TGAAACTGCTTCT	.	110.0	39.0	87.0	0.0	.	301	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7773106	7773106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ADCY2	NM_020546	exon18	c.A2276G	p.Y759C	TAAACTATGAGCT	.	358.0	128.0	344.0	0.0	.	337	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26881298	26881298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CDH9	NM_016279	exon12	c.C2317A	p.R773S	TGAAACGAGGCCC	.	139.0	44.0	128.0	0.0	.	305	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52347345	52347345	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITGA2	NM_002203	exon7	c.T735C	p.Y245Y	CCAATATGGTGGG	.	165.0	50.0	158.0	0.0	.	211	.	.	Atlas-SNP
CDC20B	166979	hgsc.bcm.edu	hg19	5	54442574	54442574	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CDC20B	NM_001170402	exon3	c.A237C	p.Q79H	TTGACTTTGCTGC	.	114.0	42.0	125.0	0.0	.	61	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54619962	54619962	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SKIV2L2	NM_015360	exon3	c.T275A	p.L92X	TAAGTTTGGCAGA	.	115.0	51.0	85.0	0.0	.	104	.	.	Atlas-SNP
IL6ST	3572	hgsc.bcm.edu	hg19	5	55259985	55259985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	IL6ST,NS,carcinoma,0,1	IL6ST	NM_175767	exon6	c.C647A	p.P216H	TATACAGGATCAA	.	225.0	78.0	198.0	0.0	.	75	.	.	Atlas-SNP
PLK2	10769	hgsc.bcm.edu	hg19	5	57752800	57752800	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PLK2	NM_006622	exon8	c.A1128G	p.K376K	TTTGTCTTTTTTG	.	145.0	53.0	96.0	0.0	.	71	.	.	Atlas-SNP
FCHO2	115548	hgsc.bcm.edu	hg19	5	72377662	72377662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FCHO2	NM_138782	exon23	c.A2033C	p.K678T	ACTGGAAATGTAG	.	151.0	51.0	153.0	0.0	.	96	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90079723	90079723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR98	NM_032119	exon67	c.T13502C	p.L4501P	GCCACCTAGTGAG	.	116.0	52.0	95.0	0.0	.	605	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90079728	90079728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	GPR98,NS,carcinoma,0,2	GPR98	NM_032119	exon67	c.A13507C	p.S4503R	CTAGTGAGCAGAA	.	119.0	21.0	103.0	0.0	.	605	.	.	Atlas-SNP
ELL2	22936	hgsc.bcm.edu	hg19	5	95236720	95236720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELL2	NM_012081	exon6	c.A806G	p.Q269R	TCTCTTTGAAGCT	.	158.0	47.0	190.0	0.0	.	63	.	.	Atlas-SNP
ELL2	22936	hgsc.bcm.edu	hg19	5	95236730	95236730	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELL2	NM_012081	exon6	c.A796T	p.K266X	GCTCTTTAAAAAC	.	149.0	45.0	192.0	0.0	.	63	.	.	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153065884	153065884	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	GRIA1_ENST00000544403,NS,carcinoma,-1,1	GRIA1	NM_001258021	exon8	c.C1159T	p.R387X	GGCATCCGAAAGG	.	101.0	14.0	102.0	0.0	.	321	.	.	Atlas-SNP
CCNG1	900	hgsc.bcm.edu	hg19	5	162866370	162866370	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCNG1	NM_199246	exon3	c.A108C	p.L36L	GAGACTAATTGAG	.	133.0	47.0	171.0	0.0	.	28	.	.	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	hg19	5	170346578	170346578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RANBP17	NM_022897	exon11	c.T1235G	p.F412C	AGGCCTTTATCAC	.	193.0	73.0	190.0	0.0	.	108	.	.	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	hg19	6	15468853	15468853	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	JARID2	NM_004973	exon5	c.A574T	p.T192S	GATGAGACAGAAG	.	209.0	90.0	175.0	0.0	.	135	.	.	Atlas-SNP
SLC44A4	80736	hgsc.bcm.edu	hg19	6	31833747	31833747	+	Missense_Mutation	SNP	C	C	T	rs149591801		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	SLC44A4,NS,carcinoma,0,2	SLC44A4	NM_025257	exon14	c.G1390A	p.V464I	CGAGGACGCATTG	.	122.0	48.0	113.0	0.0	.	67	.	C|1.000;T|0.000	Atlas-SNP
TAP1	6890	hgsc.bcm.edu	hg19	6	32821435	32821435	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAP1	NM_000593	exon1	c.C159T	p.D53D	GTCCCGGTCCCGG	.	41.0	16.0	32.0	0.0	.	39	.	.	Atlas-SNP
RPS10	6204	hgsc.bcm.edu	hg19	6	34389539	34389539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPS10	NM_001203245	exon4	c.A368G	p.D123G	TCTCTGTCAGCTT	.	113.0	34.0	104.0	0.0	.	15	.	.	Atlas-SNP
PGM3	5238	hgsc.bcm.edu	hg19	6	83896734	83896734	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PGM3	NM_001199917	exon5	c.A534G	p.Q178Q	ATGGAATTGACCT	.	246.0	74.0	216.0	0.0	.	39	.	.	Atlas-SNP
RNF146	81847	hgsc.bcm.edu	hg19	6	127608258	127608258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RNF146	NM_001242850	exon3	c.A500C	p.K167T	AGATTAAGCGAGA	.	90.0	23.0	77.0	0.0	.	31	.	.	Atlas-SNP
SAMD3	154075	hgsc.bcm.edu	hg19	6	130536349	130536349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SAMD3	NM_001017373	exon3	c.A70G	p.R24G	GAAATCTATGAAC	.	127.0	40.0	100.0	0.0	.	98	.	.	Atlas-SNP
MEOX2	4223	hgsc.bcm.edu	hg19	7	15725601	15725601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MEOX2	NM_005924	exon1	c.G427A	p.A143T	CGCACGCGGCCCC	.	82.0	35.0	48.0	0.0	.	68	.	.	Atlas-SNP
PDE1C	5137	hgsc.bcm.edu	hg19	7	31793110	31793110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE1C	NM_001191058	exon19	c.C2198A	p.A733E	GAAGGTGCATAGG	.	179.0	70.0	149.0	0.0	.	465	.	.	Atlas-SNP
EEPD1	80820	hgsc.bcm.edu	hg19	7	36336620	36336620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EEPD1	NM_030636	exon7	c.T1334C	p.I445T	TCATTATCTTAGG	.	110.0	42.0	91.0	0.0	.	47	.	.	Atlas-SNP
NPC1L1	29881	hgsc.bcm.edu	hg19	7	44579886	44579886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NPC1L1	NM_001101648	exon2	c.A110G	p.D37G	CATTCGTCATAGA	.	77.0	27.0	79.0	0.0	.	141	.	.	Atlas-SNP
IGFBP3	3486	hgsc.bcm.edu	hg19	7	45956856	45956856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IGFBP3	NM_001013398	exon2	c.G604A	p.D202N	GGGTATCTGTGCT	.	169.0	60.0	191.0	0.0	.	40	.	.	Atlas-SNP
GUSB	2990	hgsc.bcm.edu	hg19	7	65425954	65425954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GUSB	NM_000181	exon12	c.T1886A	p.I629N	TTGGCAATCTTCC	.	276.0	85.0	308.0	0.0	.	52	.	.	Atlas-SNP
WBSCR22	114049	hgsc.bcm.edu	hg19	7	73105342	73105342	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WBSCR22	NM_001202560	exon6	c.C459A	p.L153L	TGTTCTCGTGAGT	.	329.0	117.0	361.0	0.0	.	27	.	.	Atlas-SNP
UPK3B	80761	hgsc.bcm.edu	hg19	7	76141019	76141019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UPK3B	NM_030570	exon2	c.C446T	p.A149V	TTCCGGCCTCCCC	.	416.0	109.0	415.0	0.0	.	15	.	.	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	hg19	7	78130909	78130909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MAGI2	NM_012301	exon5	c.A950C	p.E317A	TAGACTTCGCCCT	.	171.0	61.0	190.0	0.0	.	246	.	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	hg19	7	87148681	87148681	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ABCB1	NM_000927	exon24	c.T2888G	p.L963W	GCCACCAAGTAGG	.	122.0	13.0	95.0	0.0	.	263	.	.	Atlas-SNP
DLX5	1749	hgsc.bcm.edu	hg19	7	96651649	96651649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.,1	DLX5	NM_005221	exon2	c.G388A	p.V130M	CATTCACCATTCT	.	67.0	33.0	79.0	0.0	.	52	.	.	Atlas-SNP
CAPZA2	830	hgsc.bcm.edu	hg19	7	116544394	116544394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CAPZA2	NM_006136	exon5	c.T383A	p.L128Q	CTGCTCTGAGAGC	.	84.0	35.0	78.0	0.0	.	29	.	.	Atlas-SNP
KIAA1456	57604	hgsc.bcm.edu	hg19	8	12879028	12879028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA1456	NM_020844	exon5	c.C840A	p.S280R	CAGTAGCACTGTA	.	145.0	43.0	123.0	0.0	.	20	.	.	Atlas-SNP
EPB49	2039	hgsc.bcm.edu	hg19	8	21924617	21924617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EPB49	NM_001978	exon3	c.A40G	p.S14G	CCCGGGAGCGTGA	.	200.0	62.0	227.0	0.0	.	35	.	.	Atlas-SNP
ELP3	55140	hgsc.bcm.edu	hg19	8	28013470	28013470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELP3	NM_018091	exon11	c.T1112C	p.M371T	TTCCAATGCCTTT	.	197.0	11.0	192.0	0.0	.	36	.	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	28974375	28974375	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIF13B	NM_015254	exon31	c.A3810G	p.R1270R	ACAGATTCTCTTG	.	234.0	74.0	262.0	0.0	.	192	.	.	Atlas-SNP
KIF13B	23303	hgsc.bcm.edu	hg19	8	28974384	28974384	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIF13B	NM_015254	exon31	c.A3801G	p.L1267L	CTTGCGTAACACC	.	247.0	76.0	274.0	0.0	.	192	.	.	Atlas-SNP
PRKDC	5591	hgsc.bcm.edu	hg19	8	48856412	48856412	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKDC	NM_001081640	exon10	c.808+1G>T	.	ATCCTACCTGAGG	.	133.0	40.0	136.0	0.0	.	394	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52323847	52323847	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PXDNL	NM_144651	exon16	c.T2025C	p.R675R	CTTCACACGTTCC	.	227.0	71.0	179.0	0.0	.	414	.	.	Atlas-SNP
RRS1	23212	hgsc.bcm.edu	hg19	8	67341483	67341483	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RRS1	NM_015169	exon1	c.G117A	p.L39L	CAACCTGCTGGCG	.	202.0	77.0	161.0	0.0	.	13	.	.	Atlas-SNP
ARFGEF1	10565	hgsc.bcm.edu	hg19	8	68130369	68130369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARFGEF1	NM_006421	exon31	c.C4343T	p.A1448V	CATTCAGCTTTCT	.	138.0	46.0	196.0	0.0	.	196	.	.	Atlas-SNP
LACTB2	51110	hgsc.bcm.edu	hg19	8	71581340	71581340	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LACTB2	NM_016027	exon1	c.C16T	p.Q6X	CGCGCTGCAGTAC	.	98.0	7.0	100.0	0.0	.	26	.	.	Atlas-SNP
INTS8	55656	hgsc.bcm.edu	hg19	8	95892461	95892461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	INTS8	NM_017864	exon27	c.A2987C	p.X996S	ACTTTTAAGCAGT	.	107.0	36.0	88.0	0.0	.	92	.	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	hg19	8	104898096	104898096	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	RIMS2_ENST00000507740,NS,carcinoma,0,22	RIMS2	NM_001100117	exon4	c.T1269G	p.S423S	AAGTTCTTATGCA	.	68.0	28.0	81.0	0.0	.	1357	.	.	Atlas-SNP
TRMT10B	158234	hgsc.bcm.edu	hg19	9	37776352	37776352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_144964	exon8	c.G794C	p.R265T	TGGTCAGAAACCA	.	203.0	76.0	213.0	0.0	.	.	.	.	Atlas-SNP
TLE1	7088	hgsc.bcm.edu	hg19	9	84300807	84300807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TLE1	NM_005077	exon3	c.A130G	p.K44E	CCAATTTAAGGCT	.	188.0	62.0	209.0	0.0	.	81	.	.	Atlas-SNP
ZFP37	7539	hgsc.bcm.edu	hg19	9	115805892	115805892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZFP37	NM_003408	exon4	c.C1006G	p.L336V	CAACAAGGTGTGA	.	128.0	46.0	177.0	0.0	.	93	.	.	Atlas-SNP
ZNF618	114991	hgsc.bcm.edu	hg19	9	116770657	116770657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF618	NM_133374	exon7	c.C578T	p.A193V	ACCGGGCAGGTAA	.	112.0	34.0	123.0	0.0	.	184	.	.	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123922548	123922548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CNTRL	NM_007018	exon30	c.T5057C	p.V1686A	TTCAGGTTGTTTT	.	200.0	56.0	234.0	0.0	.	161	.	.	Atlas-SNP
GBGT1	26301	hgsc.bcm.edu	hg19	9	136029633	136029633	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GBGT1	NM_021996	exon7	c.C375T	p.I125I	GGACTGGATGAAA	.	23.0	11.0	26.0	0.0	.	25	.	.	Atlas-SNP
ZNF22	7570	hgsc.bcm.edu	hg19	10	45499035	45499035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF22	NM_006963	exon2	c.C219A	p.H73Q	TCAACACCAGAAG	.	43.0	12.0	47.0	0.0	.	28	.	.	Atlas-SNP
ALOX5	240	hgsc.bcm.edu	hg19	10	45891384	45891384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ALOX5	NM_000698	exon3	c.G431T	p.R144L	AATATCGGTGAGT	.	132.0	42.0	150.0	0.0	.	88	.	.	Atlas-SNP
LRRC27	80313	hgsc.bcm.edu	hg19	10	134161592	134161592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRRC27	NM_001143757	exon6	c.C658T	p.P220S	CAGGACCCAGAGG	.	106.0	41.0	93.0	0.0	.	64	.	.	Atlas-SNP
C11orf42	160298	hgsc.bcm.edu	hg19	11	6231167	6231167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C11orf42	NM_173525	exon2	c.A160C	p.K54Q	CTGGTAAAACAGT	.	105.0	34.0	105.0	0.0	.	35	.	.	Atlas-SNP
ZNF215	7762	hgsc.bcm.edu	hg19	11	6977459	6977459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF215	NM_013250	exon7	c.C1251A	p.N417K	CTTCAACCGACGT	.	43.0	14.0	38.0	0.0	.	72	.	.	Atlas-SNP
CSNK2A3	283106	hgsc.bcm.edu	hg19	11	11373655	11373655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001256686	exon1	c.A1012G	p.S338G	GCATGCTAGATGA	.	99.0	40.0	94.0	0.0	.	.	.	.	Atlas-SNP
PDHX	8050	hgsc.bcm.edu	hg19	11	35006206	35006206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDHX	NM_003477	exon9	c.A1113C	p.K371N	AGATAAAGGCTTA	.	131.0	28.0	140.0	0.0	.	40	.	.	Atlas-SNP
TMEM138	51524	hgsc.bcm.edu	hg19	11	61131920	61131920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM138	NM_016464	exon2	c.T58C	p.Y20H	CTGTCCTATGACC	.	152.0	50.0	132.0	0.0	.	16	.	.	Atlas-SNP
TAF6L	10629	hgsc.bcm.edu	hg19	11	62554224	62554224	+	Missense_Mutation	SNP	G	G	C	rs377750789	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAF6L	NM_006473	exon11	c.G1325C	p.R442P	TCTACCGGGAGCT	.	78.0	29.0	47.0	0.0	.	39	.	.	Atlas-SNP
SLC22A25	387601	hgsc.bcm.edu	hg19	11	62931493	62931493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC22A25	NM_199352	exon9	c.G1447T	p.A483S	GGGAAGCCAGGGC	.	286.0	97.0	295.0	0.0	.	87	.	.	Atlas-SNP
VPS51	738	hgsc.bcm.edu	hg19	11	64877952	64877952	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_013265	exon8	c.1879-2A>G	.	ACCACCAGGTGGG	.	148.0	59.0	149.0	0.0	.	.	.	.	Atlas-SNP
SCYL1	57410	hgsc.bcm.edu	hg19	11	65293085	65293085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCYL1	NM_020680	exon2	c.A152C	p.K51T	ATGTGAAGCCTGG	.	122.0	38.0	109.0	0.0	.	76	.	.	Atlas-SNP
PC	5091	hgsc.bcm.edu	hg19	11	66618658	66618658	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PC	NM_000920	exon16	c.G2076C	p.A692A	TCCTGCCGCCTCC	.	66.0	28.0	48.0	0.0	.	116	.	.	Atlas-SNP
RAD9A	5883	hgsc.bcm.edu	hg19	11	67163617	67163617	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RAD9A	NM_004584	exon8	c.T705A	p.N235K	CTTGAATCTTAGC	.	142.0	51.0	145.0	0.0	.	15	.	.	Atlas-SNP
RAD9A	5883	hgsc.bcm.edu	hg19	11	67163618	67163618	+	Missense_Mutation	SNP	C	C	G	rs185216264	bycluster;by1000genomes;alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RAD9A	NM_004584	exon8	c.C706G	p.L236V	TTGAATCTTAGCA	.	140.0	51.0	141.0	0.0	.	15	.	C|1.000;T|0.000	Atlas-SNP
ZW10	9183	hgsc.bcm.edu	hg19	11	113619110	113619110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZW10	NM_004724	exon8	c.A958C	p.K320Q	ATGTTTTTTCATT	.	196.0	67.0	167.0	0.0	.	49	.	.	Atlas-SNP
ZBTB16	7704	hgsc.bcm.edu	hg19	11	114113007	114113007	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZBTB16	NM_006006	exon5	c.C1572T	p.N524N	GTGCAACCGCACC	.	124.0	49.0	126.0	0.0	.	101	.	.	Atlas-SNP
NOP2	4839	hgsc.bcm.edu	hg19	12	6673088	6673088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NOP2	NM_001258309	exon7	c.C598T	p.R200W	GCTTCCGAGCAGC	.	82.0	28.0	81.0	0.0	.	44	.	.	Atlas-SNP
A2M	2	hgsc.bcm.edu	hg19	12	9221388	9221388	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	A2M	NM_000014	exon34	c.A4314G	p.P1438P	TCTTACTGGGACA	.	163.0	33.0	178.0	0.0	.	180	.	.	Atlas-SNP
ALG10B	144245	hgsc.bcm.edu	hg19	12	38714457	38714457	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ALG10B	NM_001013620	exon3	c.T864C	p.F288F	TCATTTTCCTCAA	.	382.0	137.0	343.0	0.0	.	58	.	.	Atlas-SNP
METTL7A	25840	hgsc.bcm.edu	hg19	12	51323795	51323795	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	METTL7A	NM_014033	exon2	c.T597C	p.F199F	TCTGTTTGATGGG	.	97.0	26.0	112.0	0.0	.	19	.	.	Atlas-SNP
CNPY2	10330	hgsc.bcm.edu	hg19	12	56708923	56708923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CNPY2	NM_014255	exon2	c.C79T	p.H27Y	CACAGTGGAGATC	.	136.0	53.0	125.0	0.0	.	16	.	.	Atlas-SNP
LRP1	4035	hgsc.bcm.edu	hg19	12	57601983	57601983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRP1	NM_002332	exon77	c.G12022A	p.V4008M	ATTGTGGTGGACC	.	128.0	37.0	108.0	0.0	.	428	.	.	Atlas-SNP
MON2	23041	hgsc.bcm.edu	hg19	12	62929480	62929480	+	Missense_Mutation	SNP	T	T	C	rs201313378	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MON2	NM_015026	exon14	c.T1891C	p.S631P	ACACTTTCCAACA	.	180.0	61.0	206.0	0.0	.	160	.	T|0.999;G|0.001	Atlas-SNP
PHLDA1	22822	hgsc.bcm.edu	hg19	12	76425350	76425350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PHLDA1	NM_007350	exon1	c.G172A	p.D58N	TGCCGTCCTCTTG	.	155.0	66.0	122.0	0.0	.	39	.	.	Atlas-SNP
EID3	493861	hgsc.bcm.edu	hg19	12	104698075	104698075	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EID3	NM_001008394	exon1	c.C363T	p.D121D	TTGTGACTTTCTG	.	251.0	80.0	218.0	0.0	.	28	.	.	Atlas-SNP
SART3	9733	hgsc.bcm.edu	hg19	12	108932816	108932816	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SART3	NM_014706	exon7	c.T956G	p.F319C	ATCTCAAAATCGA	.	163.0	64.0	145.0	0.0	.	64	.	.	Atlas-SNP
RXFP2	122042	hgsc.bcm.edu	hg19	13	32371491	32371491	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	RXFP2,colon,carcinoma,0,1	RXFP2	NM_130806	exon17	c.A1940C	p.D647A	TCTCTGATGCCAT	.	229.0	94.0	186.0	0.0	.	95	.	.	Atlas-SNP
ITM2B	9445	hgsc.bcm.edu	hg19	13	48832330	48832330	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITM2B	NM_021999	exon4	c.T522C	p.V174V	CATTGTTATGCCA	.	231.0	12.0	206.0	0.0	.	24	.	.	Atlas-SNP
UBAC2	337867	hgsc.bcm.edu	hg19	13	99853763	99853763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UBAC2	NM_177967	exon1	c.G98A	p.G33E	GCGAGGGAGCGCA	.	501.0	166.0	503.0	0.0	.	23	.	.	Atlas-SNP
TNFSF13B	10673	hgsc.bcm.edu	hg19	13	108922722	108922722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	TNFSF13B,NS,malignant_melanoma,0,1	TNFSF13B	NM_006573	exon2	c.C374T	p.S125F	GCAACTCCAGTCA	.	93.0	33.0	97.0	0.0	.	25	.	.	Atlas-SNP
OR4Q3	441669	hgsc.bcm.edu	hg19	14	20215878	20215878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	OR4Q3	NM_172194	exon1	c.T292C	p.C98R	TCAGGATGCCTGG	.	92.0	38.0	65.0	0.0	.	117	.	.	Atlas-SNP
MBIP	51562	hgsc.bcm.edu	hg19	14	36785921	36785921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MBIP	NM_016586	exon2	c.A227C	p.E76A	TGTTGTTCAAGTG	.	230.0	63.0	217.0	0.0	.	25	.	.	Atlas-SNP
KIAA0586	9786	hgsc.bcm.edu	hg19	14	58895077	58895077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0586	NM_001244189	exon2	c.A131G	p.H44R	GAGATCATTTGGT	.	257.0	82.0	225.0	0.0	.	180	.	.	Atlas-SNP
HSPA2	3306	hgsc.bcm.edu	hg19	14	65008467	65008467	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HSPA2	NM_021979	exon1	c.C900T	p.I300I	GTCCATCACGCGC	.	89.0	34.0	65.0	0.0	.	83	.	.	Atlas-SNP
FCF1	51077	hgsc.bcm.edu	hg19	14	75190045	75190045	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FCF1	NM_015962	exon5	c.A363C	p.L121L	GGCTCTAAGGTAG	.	137.0	48.0	198.0	0.0	.	15	.	.	Atlas-SNP
NOXRED1	122945	hgsc.bcm.edu	hg19	14	77873885	77873885	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NOXRED1	NM_001113475	exon3	c.T453C	p.N151N	GCAGATATTAGGC	.	133.0	47.0	156.0	0.0	.	23	.	.	Atlas-SNP
SPTLC2	9517	hgsc.bcm.edu	hg19	14	78021746	78021746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SPTLC2	NM_004863	exon8	c.G1073A	p.G358D	ACCACACCCCGGC	.	127.0	46.0	164.0	0.0	.	55	.	.	Atlas-SNP
RIN3	79890	hgsc.bcm.edu	hg19	14	93154522	93154522	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RIN3	NM_024832	exon10	c.G2883T	p.R961R	CTACCGGCCCCTG	.	41.0	19.0	29.0	0.0	.	81	.	.	Atlas-SNP
RIN3	79890	hgsc.bcm.edu	hg19	14	93154523	93154523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RIN3	NM_024832	exon10	c.C2884T	p.P962S	TACCGGCCCCTGG	.	40.0	19.0	29.0	0.0	.	81	.	.	Atlas-SNP
PACS2	23241	hgsc.bcm.edu	hg19	14	105818768	105818768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	PACS2,lower_third,carcinoma,0,2	PACS2	NM_001100913	exon3	c.A261C	p.Q87H	TGGACAAGTGGAG	.	205.0	72.0	212.0	0.0	.	75	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28482110	28482110	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC2	NM_004667	exon26	c.C4002T	p.A1334A	CTTACTGGCACAT	.	306.0	107.0	300.0	0.0	.	501	.	.	Atlas-SNP
TJP1	7082	hgsc.bcm.edu	hg19	15	30011153	30011153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TJP1	NM_003257	exon21	c.A3193G	p.S1065G	TATAGCTTGAGGA	.	355.0	103.0	424.0	1.0	.	140	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63943568	63943568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC1	NM_003922	exon53	c.C10430T	p.A3477V	TCCTCAGCATCCC	.	75.0	32.0	90.0	0.0	.	624	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63967194	63967194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC1	NM_003922	exon38	c.A7193T	p.Y2398F	GTGAGATATGTTA	.	260.0	83.0	317.0	0.0	.	624	.	.	Atlas-SNP
PSMA4	5685	hgsc.bcm.edu	hg19	15	78837279	78837279	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PSMA4	NM_001102667	exon6	c.A356T	p.Q119L	TCAAACAAGCTTA	.	73.0	23.0	93.0	0.0	.	17	.	.	Atlas-SNP
CIB1	10519	hgsc.bcm.edu	hg19	15	90773726	90773726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CIB1	NM_006384	exon7	c.T566G	p.I189S	AGGACAATCTTAA	.	166.0	56.0	178.0	0.0	.	8	.	.	Atlas-SNP
RAB40C	57799	hgsc.bcm.edu	hg19	16	677600	677600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RAB40C	NM_021168	exon6	c.G824C	p.R275P	GCTCGCGGAGTAA	.	81.0	24.0	90.0	0.0	.	32	.	.	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2140513	2140513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PKD1	NM_001009944	exon45	c.A12217G	p.T4073A	ACAGGGTAGAGAG	.	76.0	28.0	52.0	0.0	.	184	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	10273990	10273990	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GRIN2A	NM_000833	exon3	c.A279G	p.A93A	GATGCGTGCCCCG	.	178.0	35.0	170.0	0.0	.	366	.	.	Atlas-SNP
LITAF	9516	hgsc.bcm.edu	hg19	16	11647418	11647418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LITAF	NM_001136473	exon3	c.G348T	p.W116C	GGACAGCCAGGTC	.	50.0	12.0	48.0	0.0	.	16	.	.	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	hg19	16	27788950	27788950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	KIAA0556_ENST00000261588,caecum,carcinoma,0,2	KIAA0556	NM_015202	exon26	c.T4571G	p.L1524R	ACCTGCTTGTGTA	.	95.0	33.0	122.0	0.0	.	348	.	.	Atlas-SNP
N4BP1	9683	hgsc.bcm.edu	hg19	16	48596057	48596057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	N4BP1	NM_153029	exon2	c.C497T	p.A166V	GCATGGGCTTCAA	.	178.0	58.0	147.0	0.0	.	121	.	.	Atlas-SNP
AMFR	267	hgsc.bcm.edu	hg19	16	56443342	56443342	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AMFR	NM_001144	exon3	c.T507C	p.F169F	ATATTCAAATCGA	.	66.0	19.0	71.0	0.0	.	40	.	.	Atlas-SNP
ZNF594	84622	hgsc.bcm.edu	hg19	17	5085970	5085970	+	Missense_Mutation	SNP	G	G	T	rs181984106	bycluster;by1000genomes;alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF594	NM_032530	exon2	c.C1582A	p.R528S	CTGTGCGCCAAAT	.	160.0	61.0	166.0	0.0	.	89	.	G|0.999;A|0.001	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7721651	7721651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DNAH2	NM_020877	exon68	c.T10409C	p.I3470T	TGCGCATTGGCGA	.	236.0	70.0	185.0	0.0	.	498	.	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	hg19	17	12642602	12642602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MYOCD	NM_001146312	exon7	c.T674G	p.L225R	AGGGGCTTGGCCC	.	55.0	25.0	57.0	0.0	.	291	.	.	Atlas-SNP
TVP23C	201158	hgsc.bcm.edu	hg19	17	15406305	15406305	+	Missense_Mutation	SNP	T	T	A	rs141163711	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	FAM18B2,NS,carcinoma,0,1	.	NM_145301	exon6	c.A704T	p.Q235L	GCCATCTGTTGGC	.	132.0	36.0	148.0	0.0	.	.	.	T|1.000;C|0.000	Atlas-SNP
KSR1	8844	hgsc.bcm.edu	hg19	17	25928943	25928943	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KSR1	NM_014238	exon12	c.A1124C	p.K375T	GCTGGAAATGCCT	.	143.0	42.0	126.0	0.0	.	151	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29496954	29496954	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NF1	NM_001128147	exon5	c.T525C	p.H175H	TGTTCATGATATA	.	84.0	28.0	64.0	0.0	.	1586	.	.	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35631111	35631111	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ACACA	NM_198834	exon9	c.T981C	p.Y327Y	TTTCACATAACCT	.	163.0	52.0	165.0	0.0	.	395	.	.	Atlas-SNP
KRT40	125115	hgsc.bcm.edu	hg19	17	39140461	39140461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KRT40	NM_182497	exon3	c.C65T	p.A22V	GCAGGTGCACAAC	.	140.0	59.0	109.0	0.0	.	27	.	.	Atlas-SNP
ZNF652	22834	hgsc.bcm.edu	hg19	17	47390068	47390068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF652	NM_001145365	exon3	c.A1040G	p.H347R	ACCATGTGTTTCC	.	121.0	32.0	80.0	0.0	.	54	.	.	Atlas-SNP
SLC35B1	10237	hgsc.bcm.edu	hg19	17	47781491	47781491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC35B1	NM_005827	exon6	c.A626C	p.N209T	CAAAGGTTGATGT	.	395.0	127.0	279.0	0.0	.	21	.	.	Atlas-SNP
PDK2	5164	hgsc.bcm.edu	hg19	17	48174927	48174927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDK2	NM_002611	exon2	c.T259C	p.W87R	CAGAGCTGGTGAG	.	62.0	16.0	42.0	0.0	.	41	.	.	Atlas-SNP
MTMR4	9110	hgsc.bcm.edu	hg19	17	56584192	56584192	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MTMR4	NM_004687	exon10	c.A903C	p.A301A	AGGAGCTGCTGTG	.	114.0	18.0	80.0	0.0	.	91	.	.	Atlas-SNP
PECAM1	5175	hgsc.bcm.edu	hg19	17	62407077	62407077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_000442	exon1	c.G7A	p.V3M	TTTCCACGGCATC	.	101.0	42.0	72.0	0.0	.	.	.	.	Atlas-SNP
AXIN2	8313	hgsc.bcm.edu	hg19	17	63534326	63534326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AXIN2	NM_004655	exon5	c.C1195T	p.R399X	CCTCTCGGATCTG	.	204.0	55.0	173.0	0.0	.	92	.	.	Atlas-SNP
CD300LB	124599	hgsc.bcm.edu	hg19	17	72518964	72518964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CD300LB	NM_174892	exon4	c.G630C	p.K210N	AGACCCCTTCAAC	.	307.0	86.0	229.0	0.0	.	38	.	.	Atlas-SNP
CCDC137	339230	hgsc.bcm.edu	hg19	17	79639185	79639185	+	Silent	SNP	G	G	A	rs373550389		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCDC137	NM_199287	exon5	c.G660A	p.Q220Q	GGACCAGGTAAGT	.	140.0	77.0	128.0	0.0	.	27	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80037282	80037282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FASN	NM_004104	exon42	c.C7349T	p.T2450M	CCACCCGTCTTGG	.	185.0	51.0	150.0	0.0	.	154	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80039907	80039907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FASN	NM_004104	exon36	c.A6141C	p.K2047N	CCGGCGTTTCTCA	.	76.0	16.0	39.0	0.0	.	154	.	.	Atlas-SNP
ENOSF1	55556	hgsc.bcm.edu	hg19	18	683313	683313	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ENOSF1	NM_202758	exon11	c.T872G	p.F291C	GGCTTGAACTTGG	.	266.0	90.0	238.0	0.0	.	44	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21418835	21418835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LAMA3	NM_001127717	exon26	c.A3184G	p.N1062D	TTTGTCAATCAAA	.	258.0	74.0	314.0	0.0	.	397	.	.	Atlas-SNP
ZNF397	84307	hgsc.bcm.edu	hg19	18	32826113	32826113	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF397	NM_001135178	exon4	c.C1444T	p.Q482X	CCTTATCAGTGTA	.	169.0	64.0	172.0	0.0	.	51	.	.	Atlas-SNP
GALNT1	2589	hgsc.bcm.edu	hg19	18	33267146	33267146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GALNT1	NM_020474	exon5	c.G856C	p.V286L	CTTCCTGTCAGGT	.	88.0	21.0	135.0	0.0	.	53	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8211044	8211044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FBN3	NM_032447	exon3	c.G316A	p.G106R	GCGTCCCATCCGC	.	269.0	15.0	274.0	0.0	.	300	.	.	Atlas-SNP
ACTL9	284382	hgsc.bcm.edu	hg19	19	8807893	8807893	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ACTL9	NM_178525	exon1	c.C1159T	p.L387L	AGGCCAGGATGGA	.	102.0	29.0	107.0	0.0	.	74	.	.	Atlas-SNP
ZNF560	147741	hgsc.bcm.edu	hg19	19	9578276	9578276	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF560	NM_152476	exon10	c.A1347G	p.G449G	CAAATGTCCAAAA	.	131.0	56.0	146.0	0.0	.	162	.	.	Atlas-SNP
PDE4A	5141	hgsc.bcm.edu	hg19	19	10531543	10531543	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE4A	NM_001111307	exon1	c.C103A	p.R35R	CTGTGGCGGCAGC	.	20.0	12.0	24.0	0.0	.	236	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610398	10610398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KEAP1	NM_012289	exon2	c.C312A	p.S104R	GACAGGGCTGGAT	.	157.0	55.0	145.0	0.0	.	182	.	.	Atlas-SNP
LPHN1	22859	hgsc.bcm.edu	hg19	19	14261860	14261860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LPHN1	NM_001008701	exon24	c.C4250A	p.P1417H	GGGCCGGGGGGTG	.	91.0	42.0	41.0	0.0	.	107	.	.	Atlas-SNP
ZNF675	171392	hgsc.bcm.edu	hg19	19	23837293	23837293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF675	NM_138330	exon4	c.A442C	p.K148Q	CATATTTATCACA	.	119.0	6.0	97.0	0.0	.	88	.	.	Atlas-SNP
ZFP82	284406	hgsc.bcm.edu	hg19	19	36884388	36884388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZFP82	NM_133466	exon5	c.A854C	p.K285T	CACTCTTTACACA	.	121.0	64.0	118.0	0.0	.	71	.	.	Atlas-SNP
POU2F2	5452	hgsc.bcm.edu	hg19	19	42599725	42599725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	POU2F2	NM_001207025	exon10	c.G926A	p.R309H	GCGAAGCGGACGT	.	77.0	11.0	88.0	0.0	.	106	.	.	Atlas-SNP
ERCC2	2068	hgsc.bcm.edu	hg19	19	45860557	45860557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ERCC2	NM_000400	exon15	c.A1450G	p.T484A	CCAGCGTCATGGT	.	169.0	66.0	179.0	0.0	.	78	.	.	Atlas-SNP
TEAD2	8463	hgsc.bcm.edu	hg19	19	49845749	49845749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TEAD2	NM_001256660	exon12	c.G1188C	p.Q396H	AGGCAGCTGCCGC	.	181.0	63.0	154.0	0.0	.	70	.	.	Atlas-SNP
ZNF432	9668	hgsc.bcm.edu	hg19	19	52538392	52538392	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF432	NM_014650	exon5	c.T540A	p.S180S	ACTTACAGAGAAT	.	100.0	30.0	81.0	0.0	.	172	.	.	Atlas-SNP
NLRP11	204801	hgsc.bcm.edu	hg19	19	56320455	56320455	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NLRP11	NM_145007	exon5	c.T1521G	p.L507L	TGTCTCAAGAATC	.	177.0	58.0	189.0	0.0	.	139	.	.	Atlas-SNP
TCF15	6939	hgsc.bcm.edu	hg19	20	590855	590855	+	Silent	SNP	G	G	A	rs45526442		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TCF15	NM_004609	exon1	c.C27T	p.V9V	CGCGCCGACGGGC	.	10.0	6.0	4.0	0.0	.	6	.	G|0.950;A|0.050	Atlas-SNP
NOP56	10528	hgsc.bcm.edu	hg19	20	2633966	2633966	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NOP56	NM_006392	exon3	c.C135G	p.I45M	CAGCATCGTTCGT	.	261.0	44.0	303.0	0.0	.	73	.	.	Atlas-SNP
FAM83C	128876	hgsc.bcm.edu	hg19	20	33875240	33875240	+	Missense_Mutation	SNP	G	G	A	rs375816362		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FAM83C	NM_178468	exon4	c.C1342T	p.R448C	GGGAGCGAGGAAG	.	86.0	35.0	101.0	0.0	.	80	.	.	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36848153	36848153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA1755	NM_001029864	exon11	c.C2435T	p.A812V	GCAGTGGCTGCAG	.	97.0	25.0	86.0	0.0	.	145	.	.	Atlas-SNP
SIM2	6493	hgsc.bcm.edu	hg19	21	38117328	38117328	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SIM2	NM_005069	exon10	c.C1467T	p.C489C	TGAATGCCAGTGG	.	128.0	38.0	116.0	0.0	.	55	.	.	Atlas-SNP
KCNJ15	3772	hgsc.bcm.edu	hg19	21	39671772	39671772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KCNJ15	NM_170736	exon3	c.A589G	p.S197G	TTGGTGATTCAGG	.	67.0	16.0	61.0	0.0	.	43	.	.	Atlas-SNP
IGSF5	150084	hgsc.bcm.edu	hg19	21	41160116	41160116	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IGSF5	NM_001080444	exon6	c.956+1G>A	.	TCAAAAGTAAGTT	.	197.0	10.0	186.0	0.0	.	62	.	.	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	hg19	22	24718668	24718668	+	Missense_Mutation	SNP	A	A	G	rs200752862	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SPECC1L	NM_001145468	exon4	c.A1720G	p.I574V	GACCAGATAGAGA	.	79.0	27.0	71.0	0.0	.	85	.	.	Atlas-SNP
SPECC1L	23384	hgsc.bcm.edu	hg19	22	24718674	24718674	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SPECC1L	NM_001145468	exon4	c.A1726C	p.M576L	ATAGAGATGAATC	.	82.0	27.0	66.0	0.0	.	85	.	.	Atlas-SNP
ADRBK2	157	hgsc.bcm.edu	hg19	22	26117279	26117279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ADRBK2	NM_005160	exon20	c.T1820C	p.L607P	AGATTCTCTCTGT	.	336.0	113.0	266.0	0.0	.	78	.	.	Atlas-SNP
WWC3	55841	hgsc.bcm.edu	hg19	X	10094158	10094158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WWC3	NM_015691	exon15	c.A1918G	p.I640V	AGCCACATCCGAG	.	121.0	79.0	112.0	0.0	.	142	.	.	Atlas-SNP
SEPT6	23157	hgsc.bcm.edu	hg19	X	118827051	118827051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SEPT6	NM_145802	exon1	c.A18G	p.I6M	GCGAGCTATATCG	.	122.0	77.0	185.0	0.0	.	53	.	.	Atlas-SNP
C19orf24	55009	hgsc.bcm.edu	hg19	19	1275790	1275792	+	In_Frame_Del	DEL	GCG	GCG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCG	GCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C19orf24	NM_017914	exon1	c.241_243del	p.81_81del	.	.	70.0	50.0	32.0	0.0	.	6	.	.	Atlas-Indel,Pindel
C21orf91	54149	hgsc.bcm.edu	hg19	21	19168929	19168942	+	Frame_Shift_Del	DEL	TCTGGACATTAGCC	TCTGGACATTAGCC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCTGGACATTAGCC	TCTGGACATTAGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C21orf91	NM_017447	exon3	c.622_635del	p.208_212del	.	.	250.0	50.0	261.0	0.0	.	21	.	.	Atlas-Indel,Pindel
PHLDB2	90102	hgsc.bcm.edu	hg19	3	111632427	111632427	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	PHLDB2_ENST00000431670,NS,carcinoma,0,3	PHLDB2	NM_001134437	exon4	c.1677delC	p.F559fs	.	.	144.0	51.0	115.0	0.0	.	449	.	.	Atlas-Indel,Pindel
FREM2	341640	hgsc.bcm.edu	hg19	13	39263846	39263886	+	Frame_Shift_Del	DEL	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	FREM2,caecum,carcinoma,0,1	FREM2	NM_207361	exon1	c.2364_2404del	p.788_802del	.	.	76.0	14.0	92.0	0.0	.	385	.	.	Atlas-Indel,Pindel
TMEM33	55161	hgsc.bcm.edu	hg19	4	41941291	41941298	+	Frame_Shift_Del	DEL	ATTACCAC	ATTACCAC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	ATTACCAC	ATTACCAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM33	NM_018126	exon3	c.218_225del	p.73_75del	.	.	217.0	17.0	274.0	0.0	.	17	.	.	Atlas-INDEL
PAIP2	51247	hgsc.bcm.edu	hg19	5	138704424	138704429	+	In_Frame_Del	DEL	CAAGAG	CAAGAG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CAAGAG	CAAGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PAIP2	NM_016480	exon4	c.320_325del	p.107_109del	.	.	132.0	25.0	162.0	0.0	.	10	.	.	Atlas-Indel,Pindel
HSFY1	86614	hgsc.bcm.edu	hg19	Y	20708853	20708853	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_152584	exon1	c.179delC	p.P60fs	.	.	174.0	63.0	147.0	0.0	.	.	.	.	Atlas-INDEL
ZNF383	163087	hgsc.bcm.edu	hg19	19	37734483	37734484	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF383	NM_152604	exon5	c.1344_1345del	p.448_449del	.	.	63.0	20.0	78.0	0.0	.	42	.	.	Atlas-Indel,Pindel
VPS53	55275	hgsc.bcm.edu	hg19	17	531471	531479	+	Frame_Shift_Del	DEL	TCTAGTAAA	TCTAGTAAA	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCTAGTAAA	TCTAGTAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VPS53	NM_001128159	exon9	c.688_689del	p.230_230del	.	.	68.0	20.0	100.0	0.0	.	109	.	.	Atlas-Indel,Pindel
STON1-GTF2A1L	286749	hgsc.bcm.edu	hg19	2	48818840	48818841	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1-GTF2A1L	NM_172311	exon3	c.1978_1979del	p.660_660del	.	.	214.0	35.0	252.0	0.0	.	180	.	.	Atlas-INDEL
GABRR1	2569	hgsc.bcm.edu	hg19	6	89899882	89899890	+	Frame_Shift_Del	DEL	TCACAGCTT	TCACAGCTT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCACAGCTT	TCACAGCTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GABRR1	NM_002042	exon6	c.652_655del	p.218_219del	.	.	97.0	19.0	143.0	0.0	.	63	.	.	Atlas-Indel,Pindel
KEAP1	9817	hgsc.bcm.edu	hg19	19	10602811	10602812	+	Frame_Shift_Ins	INS	-	-	CGTA	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KEAP1	NM_012289	exon3	c.767_768insTACG	p.D256fs	.	.	103.0	18.0	84.0	0.0	.	182	.	.	Atlas-Indel,Pindel
METTL7A	25840	hgsc.bcm.edu	hg19	12	51323788	51323788	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	METTL7A	NM_014033	exon2	c.589delC	p.L197fs	.	.	100.0	24.0	128.0	0.0	.	19	.	.	Atlas-Indel,Pindel
MAGI2	9863	hgsc.bcm.edu	hg19	7	78130892	78130893	+	Splice_Site	INS	-	-	CT	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MAGI2	NM_012301	exon6	c.965+2->AG	.	.	.	139.0	44.0	160.0	0.0	.	246	.	.	Atlas-Indel,Pindel
PTGR1	22949	hgsc.bcm.edu	hg19	9	114341085	114341086	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PTGR1	NM_001146108	exon7	c.642_643insAA	p.Y214_F215delinsX	.	.	112.0	13.0	136.0	0.0	.	23	.	.	Atlas-INDEL
PRKD2	25865	hgsc.bcm.edu	hg19	19	47214295	47214320	+	Frame_Shift_Del	DEL	GCTGTAGGCGGAAAATAGGGGTGGAT	GCTGTAGGCGGAAAATAGGGGTGGAT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCTGTAGGCGGAAAATAGGGGTGGAT	GCTGTAGGCGGAAAATAGGGGTGGAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKD2	NM_016457	exon3	c.380_381del	p.127_127del	.	.	109.0	14.0	186.0	0.0	.	94	.	.	Atlas-INDEL
LRP2	4036	hgsc.bcm.edu	hg19	2	170033099	170033110	+	Frame_Shift_Del	DEL	CTAGTGGAAAAG	CTAGTGGAAAAG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CTAGTGGAAAAG	CTAGTGGAAAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRP2	NM_004525	exon54	c.10394_10394del	p.3465_3465del	.	.	63.0	10.0	94.0	0.0	.	751	.	.	Atlas-Indel,Pindel
HSFY1	86614	hgsc.bcm.edu	hg19	Y	20935324	20935324	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_152584	exon1	c.182delG	p.S61fs	.	.	182.0	59.0	133.0	0.0	.	.	.	.	Atlas-INDEL
PIGV	55650	hgsc.bcm.edu	hg19	1	27124244	27124259	+	Frame_Shift_Del	DEL	GTTCTCCAGTCACACG	GTTCTCCAGTCACACG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GTTCTCCAGTCACACG	GTTCTCCAGTCACACG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PIGV	NM_001202554	exon4	c.1390_1405del	p.464_469del	.	.	109.0	23.0	148.0	0.0	.	47	.	.	Atlas-Indel,Pindel
AP1G2	8906	hgsc.bcm.edu	hg19	14	24031766	24031766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AP1G2	NM_003917	exon15	c.1448delA	p.E483fs	.	.	117.0	37.0	111.0	0.0	.	75	.	.	Atlas-Indel,Pindel
SCAMP4	113178	hgsc.bcm.edu	hg19	19	1924232	1924242	+	Frame_Shift_Del	DEL	GCCCGAGTACC	GCCCGAGTACC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCCCGAGTACC	GCCCGAGTACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCAMP4	NM_079834	exon7	c.638_648del	p.213_216del	.	.	35.0	13.0	75.0	0.0	.	7	.	.	Atlas-Indel,Pindel
STON1-GTF2A1L	286749	hgsc.bcm.edu	hg19	2	48818835	48818835	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1-GTF2A1L	NM_172311	exon3	c.1973delG	p.G658fs	.	.	213.0	36.0	255.0	0.0	.	180	.	.	Atlas-INDEL
TMEM33	55161	hgsc.bcm.edu	hg19	4	41941283	41941289	+	Frame_Shift_Del	DEL	CATCAAA	CATCAAA	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CATCAAA	CATCAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM33	NM_018126	exon3	c.210_216del	p.70_72del	.	.	222.0	17.0	273.0	0.0	.	17	.	.	Atlas-INDEL
TMEM33	55161	hgsc.bcm.edu	hg19	4	41941283	41941298	+	Frame_Shift_Del	DEL	CATCAAAGATTACCAC	CATCAAAGATTACCAC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CATCAAAGATTACCAC	CATCAAAGATTACCAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM33	NM_018126	exon3	c.210_225del	p.70_75del	.	.	228.0	23.0	271.0	0.0	.	17	.	.	Pindel
EPRS	2058	hgsc.bcm.edu	hg19	1	220146578	220146633	+	In_Frame_Del	DEL	CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT	CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT	CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EPRS	NM_004446	exon29	c.4194_4244del	p.1398_1415del	.	.	129.0	21.0	147.0	0.0	.	140	.	.	Pindel
NUMA1	4926	hgsc.bcm.edu	hg19	11	71723462	71723628	+	Frame_Shift_Del	DEL	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NUMA1	NM_006185	exon16	c.4609_4636del	p.1537_1546del	.	.	43.0	11.0	36.0	0.0	.	142	.	.	Pindel
STON1-GTF2A1L	286749	hgsc.bcm.edu	hg19	2	48818835	48818841	+	Frame_Shift_Del	DEL	ATCAGAC	ATCAGAC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	ATCAGAC	ATCAGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1-GTF2A1L	NM_001198593	exon3	c.1973_1979del	p.658_660del	.	.	221.0	27.0	252.0	0.0	.	180	.	.	Pindel
