Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PLEKHN1	84069	hgsc.bcm.edu	hg19	1	902177	902177	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PLEKHN1	NM_001160184	exon2	c.G177T	p.P59P	CATCCCGGGCACG	.	4.0	4.0	6.0	0.0	.	49	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152081138	152081138	+	Missense_Mutation	SNP	C	C	G	rs189687085	bycluster;by1000genomes;alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	TCHH,NS,carcinoma,0,1	TCHH	NM_007113	exon3	c.G4555C	p.E1519Q	CCTCCTCGAGGAA	.	120.0	24.0	73.0	1.0	.	275	.	C|1.000;T|0.000	Atlas-SNP
CWC22	57703	hgsc.bcm.edu	hg19	2	180815590	180815590	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CWC22	NM_020943	exon18	c.C1881T	p.A627A	GTTGATGGCAAAC	.	32.0	18.0	48.0	0.0	.	62	.	.	Atlas-SNP
PRR21	643905	hgsc.bcm.edu	hg19	2	240981996	240981996	+	Missense_Mutation	SNP	G	G	C	rs78477080	bycluster	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	PRR21,colon,carcinoma,0,4	PRR21	NM_001080835	exon1	c.C404G	p.P135R	CATGGAGGAAGGG	.	11.0	2.0	12.0	0.0	.	53	.	C|1.000	Atlas-SNP
APEH	327	hgsc.bcm.edu	hg19	3	49719195	49719195	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	APEH	NM_001640	exon16	c.C1479T	p.S493S	TGGCAGCCCTCCA	.	166.0	21.0	187.0	0.0	.	45	.	.	Atlas-SNP
PBRM1	55193	hgsc.bcm.edu	hg19	3	52643631	52643631	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PBRM1	NM_018313	exon17	c.C2265A	p.V755V	AAGCAGGACTTTG	.	96.0	4.0	108.0	0.0	.	1252	.	.	Atlas-SNP
CLOCK	9575	hgsc.bcm.edu	hg19	4	56345032	56345032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CLOCK	NM_004898	exon6	c.A206T	p.D69V	GATTTGTCCATCT	.	104.0	43.0	102.0	0.0	.	81	.	.	Atlas-SNP
CEP135	9662	hgsc.bcm.edu	hg19	4	56835289	56835289	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CEP135	NM_025009	exon9	c.C1105T	p.Q369X	AAACTTCAGCTGG	.	125.0	5.0	117.0	0.0	.	115	.	.	Atlas-SNP
SKIV2L2	23517	hgsc.bcm.edu	hg19	5	54624616	54624616	+	Silent	SNP	A	A	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SKIV2L2	NM_015360	exon5	c.A492C	p.S164S	TACCTCAGCGGGA	.	66.0	27.0	76.0	0.0	.	104	.	.	Atlas-SNP
DEK	7913	hgsc.bcm.edu	hg19	6	18249918	18249918	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DEK	NM_003472	exon7	c.G726A	p.E242E	TGAAGACTCTTCC	.	111.0	8.0	58.0	0.0	.	31	.	.	Atlas-SNP
LATS1	9113	hgsc.bcm.edu	hg19	6	149997737	149997737	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	LATS1	NM_004690	exon6	c.G2730A	p.L910L	CCCAACCAAAGAA	.	69.0	4.0	75.0	0.0	.	241	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42116418	42116418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	GLI3	NM_000168	exon4	c.C406A	p.P136T	CAATTGGTACAGG	.	175.0	33.0	161.0	0.0	.	312	.	.	Atlas-SNP
ZCWPW1	55063	hgsc.bcm.edu	hg19	7	100004329	100004329	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZCWPW1	NM_001258008	exon12	c.G1161A	p.E387E	TGATAGCTCCAGG	.	85.0	8.0	83.0	0.0	.	41	.	.	Atlas-SNP
TAS2R3	50831	hgsc.bcm.edu	hg19	7	141464093	141464093	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TAS2R3	NM_016943	exon1	c.C135G	p.D45E	GTCTGACTTCATC	.	148.0	6.0	172.0	0.0	.	40	.	.	Atlas-SNP
SLC25A37	51312	hgsc.bcm.edu	hg19	8	23429092	23429092	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SLC25A37	NM_016612	exon4	c.C741T	p.L247L	GGCCCTCGCCGCG	.	33.0	16.0	39.0	0.0	.	27	.	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	hg19	8	133141974	133141974	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KCNQ3	NM_004519	exon15	c.G2154C	p.V718V	CAGGTTCACAGGG	.	304.0	89.0	176.0	0.0	.	164	.	.	Atlas-SNP
NFX1	4799	hgsc.bcm.edu	hg19	9	33295194	33295194	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	NFX1,NS,haematopoietic_neoplasm,0,1	NFX1	NM_147134	exon2	c.C802T	p.R268X	GGCCACCGACATA	.	127.0	7.0	146.0	1.0	.	85	.	.	Atlas-SNP
OGN	4969	hgsc.bcm.edu	hg19	9	95152228	95152228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	OGN	NM_033014	exon5	c.C538G	p.L180V	GTTTTAGTAGTTG	.	29.0	14.0	56.0	0.0	.	26	.	.	Atlas-SNP
WT1	7490	hgsc.bcm.edu	hg19	11	32414248	32414248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	WT1	NM_024424	exon8	c.T1303C	p.S435P	GGTCTGAACGAGA	.	243.0	101.0	260.0	0.0	.	744	.	.	Atlas-SNP
CATSPER1	117144	hgsc.bcm.edu	hg19	11	65788038	65788038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CATSPER1	NM_053054	exon7	c.T1988C	p.L663P	CACTTGAGGAAGA	.	120.0	42.0	105.0	0.0	.	101	.	.	Atlas-SNP
GPR84	53831	hgsc.bcm.edu	hg19	12	54756722	54756722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	GPR84	NM_020370	exon2	c.G914A	p.R305K	GCTCTTCTGGCTC	.	135.0	9.0	154.0	0.0	.	38	.	.	Atlas-SNP
NAB2	4665	hgsc.bcm.edu	hg19	12	57484963	57484963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	NAB2	NM_005967	exon2	c.C139T	p.R47W	CTGTACCGGGTCC	.	96.0	4.0	95.0	0.0	.	47	.	.	Atlas-SNP
KHNYN	23351	hgsc.bcm.edu	hg19	14	24901509	24901509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KHNYN	NM_015299	exon3	c.C1042A	p.H348N	CGGCTCCACAATG	.	150.0	8.0	174.0	0.0	.	46	.	.	Atlas-SNP
CKB	1152	hgsc.bcm.edu	hg19	14	103986257	103986257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CKB	NM_001823	exon8	c.G1090A	p.E364K	GCTGCTCCATCTC	.	43.0	16.0	47.0	0.0	.	9	.	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65680865	65680865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	IGDCC4	NM_020962	exon16	c.A2767T	p.M923L	CCCCCATCTTGAA	.	82.0	30.0	101.0	0.0	.	95	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1263800	1263800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CACNA1H	NM_021098	exon27	c.T4798C	p.Y1600H	CCCTACTATGCCG	.	23.0	5.0	35.0	0.0	.	317	.	.	Atlas-SNP
ZNF263	10127	hgsc.bcm.edu	hg19	16	3335687	3335687	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZNF263	NM_005741	exon3	c.C575G	p.S192C	CATTATCTGCTCC	.	142.0	27.0	133.0	0.0	.	58	.	.	Atlas-SNP
SMG6	23293	hgsc.bcm.edu	hg19	17	2203672	2203672	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SMG6	NM_017575	exon2	c.T375C	p.A125A	TTGTCCAGCAGTC	.	17.0	15.0	30.0	0.0	.	97	.	.	Atlas-SNP
CERS4	79603	hgsc.bcm.edu	hg19	19	8321909	8321909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_024552	exon9	c.G689A	p.R230H	TGCTGCGCATTGG	.	212.0	17.0	215.0	0.0	.	.	.	.	Atlas-SNP
C19orf43	79002	hgsc.bcm.edu	hg19	19	12845284	12845284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	C19orf43	NM_024038	exon1	c.G188A	p.G63D	AAGCTGCCGTCGT	.	20.0	5.0	27.0	0.0	.	13	.	.	Atlas-SNP
USE1	55850	hgsc.bcm.edu	hg19	19	17330476	17330476	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	USE1	NM_018467	exon8	c.C634G	p.L212V	CAGAACCTGGAGA	.	162.0	10.0	145.0	0.0	.	19	.	.	Atlas-SNP
TMEM161A	54929	hgsc.bcm.edu	hg19	19	19245614	19245614	+	Missense_Mutation	SNP	C	C	G	rs143085909	bycluster;by1000genomes;alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TMEM161A	NM_001256766	exon2	c.G86C	p.R29P	AGCCAGCGCGCGA	.	56.0	27.0	56.0	0.0	.	37	.	C|1.000;A|0.000	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22155896	22155896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	ZNF208_ENST00000428290,bladder,carcinoma,0,6	ZNF208	NM_007153	exon4	c.T1940G	p.I647S	ACCTTAATAAAGG	.	56.0	4.0	78.0	0.0	.	817	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50766674	50766674	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	MYH14	NM_001145809	exon22	c.C2691T	p.T897T	GTTTACCAAGGTG	.	88.0	4.0	117.0	0.0	.	261	.	.	Atlas-SNP
TPX2	22974	hgsc.bcm.edu	hg19	20	30365347	30365347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TPX2	NM_012112	exon9	c.G788T	p.R263L	ACTTCCGCACAGA	.	153.0	68.0	169.0	0.0	.	61	.	.	Atlas-SNP
PCDH11Y	83259	hgsc.bcm.edu	hg19	Y	5605945	5605945	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PCDH11Y	NM_032973	exon5	c.A3985T	p.R1329X	CCGTCCAGAGGTG	.	242.0	220.0	241.0	1.0	.	163	.	.	Atlas-SNP
ANXA6	309	hgsc.bcm.edu	hg19	5	150483246	150483246	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ANXA6	NM_001155	exon25	c.1848delC	p.G616fs	.	.	53.0	22.0	85.0	0.0	.	102	.	.	Atlas-Indel,Pindel
DTNA	1837	hgsc.bcm.edu	hg19	18	32418068	32418068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DTNA	NM_001391	exon11	c.1104delC	p.P368fs	.	.	92.0	25.0	113.0	0.0	.	321	.	.	Atlas-Indel,Pindel
RB1	5925	hgsc.bcm.edu	hg19	13	48953741	48953742	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	RB1,rectum,carcinoma,0,1	RB1	NM_000321	exon14	c.1344_1345insG	p.L448fs	.	.	25.0	19.0	91.0	0.0	.	1068	.	.	Atlas-INDEL
PTPRT	11122	hgsc.bcm.edu	hg19	20	40730794	40730795	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PTPRT	NM_133170	exon27	c.3741_3742insTC	p.S1247fs	.	.	140.0	63.0	173.0	0.0	.	372	.	.	Atlas-INDEL
UGT2B4	7363	hgsc.bcm.edu	hg19	4	70361558	70361580	+	Frame_Shift_Del	DEL	CTGAAGTCCATTTCATAGACATC	CTGAAGTCCATTTCATAGACATC	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	CTGAAGTCCATTTCATAGACATC	CTGAAGTCCATTTCATAGACATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	UGT2B4	NM_021139	wholegene	.	.	.	.	56.0	12.0	74.0	0.0	.	105	.	.	Pindel
TCHH	7062	hgsc.bcm.edu	hg19	1	152081091	152081138	+	In_Frame_Del	DEL	GAGGAATTTTCTCTGCCGTTGCTGGCGGTGCAGCTGCTGTTCCTCCTC	GAGGAATTTTCTCTGCCGTTGCTGGCGGTGCAGCTGCTGTTCCTCCTC	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	GAGGAATTTTCTCTGCCGTTGCTGGCGGTGCAGCTGCTGTTCCTCCTC	GAGGAATTTTCTCTGCCGTTGCTGGCGGTGCAGCTGCTGTTCCTCCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TCHH	NM_007113	exon3	c.4556_4603del	p.1519_1535del	.	.	123.0	12.0	76.0	0.0	.	275	.	.	Pindel
