Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MTOR	2475	hgsc.bcm.edu	hg19	1	11317091	11317091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MTOR	NM_004958	exon4	c.A403G	p.M135V	CTGCCATGGCAAG	.	231.0	157.0	603.0	2.0	.	327	.	.	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	hg19	1	19483269	19483269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UBR4	NM_020765	exon41	c.G5911A	p.G1971R	TTAGCCCACAAAC	.	163.0	82.0	352.0	0.0	.	415	.	.	Atlas-SNP
HS2ST1	9653	hgsc.bcm.edu	hg19	1	87563544	87563544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.A612C	p.E204D	AGCAGAAGGTGGC	.	121.0	17.0	258.0	0.0	.	43	.	.	Atlas-SNP
ABCA4	24	hgsc.bcm.edu	hg19	1	94577092	94577092	+	Silent	SNP	C	C	T	rs201725352		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ABCA4	NM_000350	exon3	c.G204A	p.P68P	GAGCCACGGCAGC	.	89.0	44.0	170.0	0.0	.	275	.	C|0.999;T|0.001	Atlas-SNP
LRIG2	9860	hgsc.bcm.edu	hg19	1	113635842	113635842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LRIG2	NM_014813	exon3	c.A320G	p.N107S	ATTACAATGAACT	.	122.0	26.0	245.0	0.0	.	67	.	.	Atlas-SNP
NOTCH2NL	388677	hgsc.bcm.edu	hg19	1	145281400	145281400	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NOTCH2NL	NM_203458	exon4	c.G330T	p.L110L	CTGCCTGTCTCAT	.	1094.0	78.0	2309.0	0.0	.	100	.	.	Atlas-SNP
MAEL	84944	hgsc.bcm.edu	hg19	1	166990985	166990985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MAEL	NM_032858	exon12	c.A1198G	p.I400V	GAGAGCATTTCCA	.	153.0	44.0	395.0	0.0	.	95	.	.	Atlas-SNP
LYST	1130	hgsc.bcm.edu	hg19	1	235964399	235964399	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LYST	NM_000081	exon10	c.3713-2A>T	.	TACCCCTGAAAAG	.	19.0	7.0	48.0	0.0	.	370	.	.	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	hg19	1	240072344	240072344	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CHRM3	NM_000740	exon5	c.G1593C	p.W531C	CTACTGGCTGTGC	.	96.0	32.0	367.0	0.0	.	118	.	.	Atlas-SNP
CLIP4	79745	hgsc.bcm.edu	hg19	2	29366660	29366660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CLIP4	NM_024692	exon7	c.A734G	p.K245R	CTGCTAAGGAAAT	.	146.0	41.0	371.0	0.0	.	69	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31609400	31609400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	XDH	NM_000379	exon9	c.A673G	p.K225E	GCTGCTTCCGAGG	.	60.0	19.0	172.0	0.0	.	191	.	.	Atlas-SNP
XDH	7498	hgsc.bcm.edu	hg19	2	31609402	31609402	+	Missense_Mutation	SNP	C	C	G	rs112466737	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	XDH	NM_000379	exon9	c.G671C	p.R224P	TGCTTCCGAGGAG	.	59.0	20.0	170.0	0.0	.	191	.	C|0.999;T|0.001	Atlas-SNP
EMX1	2016	hgsc.bcm.edu	hg19	2	73160942	73160942	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	EMX1,bladder,carcinoma,0,1	EMX1	NM_004097	exon3	c.G732A	p.R244R	CCGGAGGACAAAG	.	56.0	17.0	161.0	0.0	.	12	.	.	Atlas-SNP
NAT8	9027	hgsc.bcm.edu	hg19	2	73868277	73868277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	NAT8,NS,carcinoma,0,1	NAT8	NM_003960	exon2	c.C479A	p.T160N	AGGACAGTCCTGA	.	107.0	44.0	296.0	1.0	.	26	.	.	Atlas-SNP
CCDC138	165055	hgsc.bcm.edu	hg19	2	109405347	109405347	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CCDC138	NM_144978	exon3	c.C191A	p.S64X	GTTCATCGTTAAA	.	54.0	14.0	140.0	0.0	.	49	.	.	Atlas-SNP
DPP10	57628	hgsc.bcm.edu	hg19	2	116497381	116497381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DPP10	NM_001178034	exon9	c.T776C	p.M259T	TCCTGATGATAAA	.	197.0	52.0	414.0	0.0	.	415	.	.	Atlas-SNP
PIKFYVE	200576	hgsc.bcm.edu	hg19	2	209190271	209190271	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PIKFYVE	NM_015040	exon20	c.C2736T	p.P912P	CATCCCCTGGGAT	.	67.0	17.0	163.0	0.0	.	223	.	.	Atlas-SNP
USP40	55230	hgsc.bcm.edu	hg19	2	234438104	234438104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	USP40	NM_018218	exon11	c.C1559A	p.A520E	TTAGCTGCATCCA	.	24.0	8.0	61.0	0.0	.	174	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41268760	41268760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CTNNB1	NM_001098209	exon7	c.A998T	p.Y333F	ATACTTACGAAAA	.	39.0	14.0	107.0	0.0	.	4904	.	.	Atlas-SNP
ZPLD1	131368	hgsc.bcm.edu	hg19	3	102175049	102175049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZPLD1	NM_175056	exon4	c.C388T	p.P130S	ACAATTCCTGGAG	.	54.0	23.0	140.0	0.0	.	82	.	.	Atlas-SNP
EPHB1	2047	hgsc.bcm.edu	hg19	3	134920510	134920510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	EPHB1	NM_004441	exon12	c.T2325G	p.D775E	CTCAGATCCCACC	.	175.0	60.0	393.0	1.0	.	519	.	.	Atlas-SNP
PAQR9	344838	hgsc.bcm.edu	hg19	3	142682019	142682019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PAQR9	NM_198504	exon1	c.T160G	p.F54V	CCACGAAGTCGTC	.	67.0	19.0	105.0	0.0	.	57	.	.	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	hg19	3	183209884	183209884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHL6	NM_130446	exon7	c.G1697T	p.R566L	TCGTCCCGCCCGC	.	92.0	5.0	122.0	0.0	.	100	.	.	Atlas-SNP
ECE2	9718	hgsc.bcm.edu	hg19	3	183995039	183995039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ECE2	NM_014693	exon4	c.A617G	p.D206G	CCACAGACCCATC	.	70.0	20.0	269.0	0.0	.	303	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30726026	30726026	+	Missense_Mutation	SNP	G	G	T	rs370196952		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PCDH7	NM_032457	exon1	c.G2982T	p.R994S	GGCAAGGCATTAC	.	100.0	36.0	222.0	0.0	.	215	.	.	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39902096	39902096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PDS5A	NM_001100399	exon14	c.A1531G	p.M511V	GAAGCATGTTCTG	.	34.0	16.0	93.0	0.0	.	114	.	.	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	hg19	4	74008384	74008384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ANKRD17	NM_198889	exon12	c.T2058G	p.H686Q	TGCCCCATGAGCC	.	57.0	20.0	93.0	0.0	.	214	.	.	Atlas-SNP
PTPN13	5783	hgsc.bcm.edu	hg19	4	87655497	87655497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTPN13	NM_006264	exon13	c.A1900G	p.K634E	TTAACCAAAGTGG	.	38.0	10.0	105.0	0.0	.	203	.	.	Atlas-SNP
GPRIN3	285513	hgsc.bcm.edu	hg19	4	90171127	90171127	+	Silent	SNP	A	A	G	rs372513468		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPRIN3	NM_198281	exon2	c.T135C	p.N45N	AAAGCCATTGGCA	.	62.0	23.0	141.0	0.0	.	90	.	.	Atlas-SNP
HHIP	64399	hgsc.bcm.edu	hg19	4	145568034	145568034	+	Silent	SNP	C	C	T	rs200359445		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HHIP	NM_022475	exon1	c.C207T	p.C69C	GCTGTGCGGTGGC	.	72.0	4.0	195.0	0.0	.	100	.	.	Atlas-SNP
IQGAP2	10788	hgsc.bcm.edu	hg19	5	75888748	75888748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	IQGAP2	NM_006633	exon9	c.A905G	p.N302S	AAGTCAACAGTAA	.	165.0	49.0	336.0	0.0	.	186	.	.	Atlas-SNP
SRA1	10011	hgsc.bcm.edu	hg19	5	139930368	139930368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SRA1	NM_001035235	exon5	c.T628C	p.S210P	CCTCTGAAAACAG	.	95.0	4.0	225.0	0.0	.	24	.	.	Atlas-SNP
GPRIN1	114787	hgsc.bcm.edu	hg19	5	176024063	176024063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPRIN1	NM_052899	exon2	c.T2773C	p.Y925H	CGCCGTATACCTC	.	18.0	8.0	21.0	0.0	.	77	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176562395	176562395	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NSD1	NM_022455	exon2	c.T291G	p.F97L	ATCCTTTCAAGAC	.	51.0	16.0	142.0	0.0	.	416	.	.	Atlas-SNP
DDAH2	23564	hgsc.bcm.edu	hg19	6	31695402	31695402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DDAH2	NM_013974	exon6	c.G659C	p.C220S	AAGAGACAGTCAG	.	88.0	21.0	253.0	0.0	.	15	.	.	Atlas-SNP
ZNF451	26036	hgsc.bcm.edu	hg19	6	57011983	57011983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF451	NM_001031623	exon10	c.G1100T	p.C367F	CAGATTGCAATCA	.	84.0	19.0	172.0	0.0	.	181	.	.	Atlas-SNP
PGM3	5238	hgsc.bcm.edu	hg19	6	83881724	83881724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PGM3	NM_001199917	exon12	c.A1381C	p.K461Q	AGCCCTTCAGAGC	.	37.0	9.0	137.0	0.0	.	39	.	.	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	hg19	6	106554333	106554333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PRDM1	NM_001198	exon6	c.C1861T	p.H621Y	CAGAAACACTACC	.	85.0	36.0	220.0	0.0	.	195	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136599396	136599396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	BCLAF1	NM_014739	exon4	c.C623A	p.T208K	CCGGATGTGGCTG	.	72.0	10.0	165.0	0.0	.	203	.	.	Atlas-SNP
ACAT2	39	hgsc.bcm.edu	hg19	6	160189612	160189612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ACAT2	NM_005891	exon4	c.T442A	p.C148S	ATACTCTGTGATG	.	69.0	22.0	206.0	0.0	.	32	.	.	Atlas-SNP
GARS	2617	hgsc.bcm.edu	hg19	7	30673470	30673470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GARS	NM_002047	exon17	c.G2214T	p.E738D	AATCGAGGAATGA	.	35.0	17.0	90.0	0.0	.	52	.	.	Atlas-SNP
CCDC129	223075	hgsc.bcm.edu	hg19	7	31682701	31682701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CCDC129	NM_001257968	exon11	c.G1795A	p.V599I	ACCCACGTCACAG	.	82.0	30.0	184.0	0.0	.	127	.	.	Atlas-SNP
ELMO1	9844	hgsc.bcm.edu	hg19	7	36895340	36895340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ELMO1	NM_014800	exon22	c.A2000G	p.D667G	AGTCCATCCGTCC	.	135.0	38.0	312.0	0.0	.	141	.	.	Atlas-SNP
SUMF2	25870	hgsc.bcm.edu	hg19	7	56140741	56140741	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SUMF2	NM_015411	exon3	c.G333C	p.W111C	TGGATGGAGCTTT	.	84.0	20.0	178.0	0.0	.	56	.	.	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	hg19	7	91694746	91694746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	AKAP9_ENST00000356239,NS,other,0,2	AKAP9	NM_005751	exon25	c.A6179G	p.K2060R	TGGAAAAGCAGTT	.	50.0	23.0	100.0	1.0	.	788	.	.	Atlas-SNP
GCC1	79571	hgsc.bcm.edu	hg19	7	127222282	127222282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GCC1	NM_024523	exon2	c.A2114G	p.H705R	TCGATGTGGCTCT	.	225.0	62.0	620.0	1.0	.	83	.	.	Atlas-SNP
SLC13A4	26266	hgsc.bcm.edu	hg19	7	135412217	135412217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC13A4	NM_012450	exon1	c.G28A	p.V10I	TCCGGACTCGGAG	.	26.0	11.0	8.0	0.0	.	56	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141763307	141763307	+	Silent	SNP	T	T	C	rs369807337		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MGAM	NM_004668	exon36	c.T4266C	p.N1422N	TATGAATGAACCA	.	70.0	21.0	157.0	0.0	.	767	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124408568	124408568	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ATAD2	NM_014109	exon1	c.G30A	p.L10L	GTTGTGCAGCTCC	.	88.0	5.0	72.0	0.0	.	160	.	.	Atlas-SNP
NDRG1	10397	hgsc.bcm.edu	hg19	8	134270653	134270653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NDRG1	NM_006096	exon7	c.G406A	p.G136S	CCATGCCAATAAT	.	212.0	65.0	270.0	0.0	.	40	.	.	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141874456	141874456	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTK2	NM_005607	exon5	c.C471G	p.N157K	AAACTGGTTTAGA	.	90.0	32.0	169.0	0.0	.	311	.	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8504350	8504350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTPRD	NM_130392	exon12	c.A1733G	p.N578S	AAGCTGTTTGGTT	.	135.0	41.0	348.0	0.0	.	1348	.	.	Atlas-SNP
SLC24A2	25769	hgsc.bcm.edu	hg19	9	19516230	19516230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC24A2	NM_020344	exon10	c.T1907A	p.M636K	CCAAACATGATGA	.	131.0	34.0	267.0	0.0	.	93	.	.	Atlas-SNP
DAB2IP	153090	hgsc.bcm.edu	hg19	9	124535286	124535286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DAB2IP	NM_032552	exon12	c.T2395G	p.S799A	CCGCTCTCCTTCC	.	32.0	11.0	41.0	0.0	.	150	.	.	Atlas-SNP
ITGA8	8516	hgsc.bcm.edu	hg19	10	15559199	15559199	+	Silent	SNP	G	G	T	rs199977895		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ITGA8	NM_003638	exon30	c.C3150A	p.T1050T	CCTGTCGGTCATG	.	42.0	18.0	65.0	0.0	.	230	.	G|0.999;T|0.001	Atlas-SNP
ZNF488	118738	hgsc.bcm.edu	hg19	10	48370889	48370889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF488	NM_153034	exon2	c.G357T	p.E119D	CCAGGAGAGGGAG	.	75.0	34.0	232.0	0.0	.	38	.	.	Atlas-SNP
SUPV3L1	6832	hgsc.bcm.edu	hg19	10	70955011	70955011	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SUPV3L1	NM_003171	exon7	c.A921T	p.R307S	GACCAGAGCACTT	.	39.0	20.0	150.0	0.0	.	61	.	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	hg19	10	79577541	79577541	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DLG5	NM_004747	exon18	c.C3778G	p.R1260G	CCAGGCGGGCGCT	.	52.0	29.0	161.0	0.0	.	154	.	.	Atlas-SNP
BLNK	29760	hgsc.bcm.edu	hg19	10	97956734	97956734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	BLNK	NM_013314	exon16	c.A1181G	p.Y394C	ATATTATATACTC	.	14.0	7.0	68.0	0.0	.	46	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	587380	587380	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PHRF1	NM_020901	exon4	c.C336A	p.L112L	CTGTCTCAACGCA	.	49.0	24.0	222.0	0.0	.	188	.	.	Atlas-SNP
KCNA5	3741	hgsc.bcm.edu	hg19	12	5153808	5153808	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KCNA5	NM_002234	exon1	c.C495T	p.F165F	CTTCTTCGACCGC	.	60.0	30.0	109.0	0.0	.	138	.	.	Atlas-SNP
SCNN1A	6337	hgsc.bcm.edu	hg19	12	6483876	6483876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SCNN1A	NM_001159576	exon1	c.A251G	p.K84R	TCACGCTTGTTCC	.	35.0	16.0	67.0	0.0	.	54	.	.	Atlas-SNP
CD163	9332	hgsc.bcm.edu	hg19	12	7640068	7640068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CD163	NM_203416	exon8	c.G1937T	p.W646L	TGCCTCCAGATCT	.	149.0	58.0	334.0	1.0	.	221	.	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41905450	41905450	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NAA16	NM_001110798	exon8	c.T852C	p.S284S	AATTAGTAAGCAG	.	64.0	20.0	115.0	0.0	.	74	.	.	Atlas-SNP
SLITRK5	26050	hgsc.bcm.edu	hg19	13	88330185	88330185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLITRK5	NM_015567	exon2	c.G2542A	p.V848M	TCGCCGGTGCAGG	.	46.0	18.0	84.0	0.0	.	192	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103392315	103392315	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001146197	exon4	c.T10732A	p.W3578R	TCTTCCATTTCGA	.	112.0	43.0	198.0	0.0	.	.	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23902342	23902342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYH7	NM_000257	exon4	c.C296T	p.P99L	ACCGCGGGCTCAT	.	182.0	66.0	413.0	0.0	.	349	.	.	Atlas-SNP
SLC8A3	6547	hgsc.bcm.edu	hg19	14	70634240	70634240	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	SLC8A3_ENST00000357887,right_upper_lobe,carcinoma,0,2	SLC8A3	NM_183002	exon2	c.C900T	p.N300N	CACCAGGTTCCCA	.	23.0	7.0	95.0	0.0	.	234	.	.	Atlas-SNP
TC2N	123036	hgsc.bcm.edu	hg19	14	92265340	92265340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TC2N	NM_001128596	exon6	c.A630C	p.R210S	CAGGCTTCTGTTA	.	13.0	7.0	24.0	0.0	.	49	.	.	Atlas-SNP
TUBGCP5	114791	hgsc.bcm.edu	hg19	15	22848249	22848249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TUBGCP5	NM_052903	exon9	c.G839T	p.G280V	TTTCAGGAGTGAA	.	40.0	11.0	129.0	0.0	.	82	.	.	Atlas-SNP
MYEF2	50804	hgsc.bcm.edu	hg19	15	48458174	48458174	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYEF2	NM_016132	exon5	c.A481C	p.M161L	TGTTCATAGTTTC	.	51.0	17.0	87.0	0.0	.	67	.	.	Atlas-SNP
UBL7	84993	hgsc.bcm.edu	hg19	15	74742014	74742014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UBL7	NM_201265	exon8	c.G667T	p.G223C	GGAAGCCACCTGG	.	79.0	4.0	191.0	0.0	.	24	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578513	7578513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	TP53_ENST00000545858,bladder,carcinoma,0,5	TP53	NM_000546	exon5	c.G417T	p.K139N	GCAGGTCTTGGCC	.	48.0	24.0	111.0	0.0	.	33396	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11573031	11573031	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DNAH9	NM_001372	exon17	c.C3273G	p.P1091P	TCGACCCTTTAAG	.	32.0	20.0	139.0	0.0	.	695	.	.	Atlas-SNP
RPL23A	6147	hgsc.bcm.edu	hg19	17	27049757	27049757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RPL23A	NM_000984	exon3	c.A226G	p.I76V	TATGCTATCATCA	.	199.0	84.0	351.0	0.0	.	13	.	.	Atlas-SNP
UNC45B	146862	hgsc.bcm.edu	hg19	17	33486394	33486394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UNC45B	NM_001267052	exon8	c.A809G	p.D270G	CTTCAGACACCAA	.	96.0	22.0	143.0	0.0	.	133	.	.	Atlas-SNP
KRT23	25984	hgsc.bcm.edu	hg19	17	39084785	39084785	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KRT23	NM_015515	exon5	c.G711C	p.L237L	CTTAATCAGATCT	.	74.0	18.0	168.0	0.0	.	59	.	.	Atlas-SNP
KRT39	390792	hgsc.bcm.edu	hg19	17	39118509	39118509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KRT39	NM_213656	exon5	c.A901G	p.S301G	GAGAGCTGGTCAC	.	76.0	32.0	132.0	0.0	.	53	.	.	Atlas-SNP
HOXB5	3215	hgsc.bcm.edu	hg19	17	46669637	46669637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HOXB5	NM_002147	exon2	c.G744C	p.K248N	CTTCCACTTCATG	.	104.0	48.0	164.0	0.0	.	20	.	.	Atlas-SNP
APPBP2	10513	hgsc.bcm.edu	hg19	17	58571884	58571884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	APPBP2	NM_006380	exon3	c.A322G	p.I108V	CTGCTATATAAGA	.	77.0	44.0	100.0	0.0	.	48	.	.	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	hg19	17	62230425	62230425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TEX2	NM_018469	exon10	c.A3041T	p.E1014V	ATAAACTCTGTCT	.	66.0	28.0	115.0	0.0	.	89	.	.	Atlas-SNP
SOX9	6662	hgsc.bcm.edu	hg19	17	70119055	70119055	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SOX9	NM_000346	exon2	c.C627T	p.A209A	GCAGGCCGACTCG	.	87.0	49.0	116.0	0.0	.	91	.	.	Atlas-SNP
RPTOR	57521	hgsc.bcm.edu	hg19	17	78857615	78857615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	RPTOR,rectum,carcinoma,0,1	RPTOR	NM_020761	exon16	c.G1685A	p.C562Y	CCATCTGCCTGGA	.	60.0	17.0	96.0	0.0	.	122	.	.	Atlas-SNP
ATP5A1	498	hgsc.bcm.edu	hg19	18	43667458	43667458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ATP5A1	NM_004046	exon7	c.A800T	p.D267V	ATGGCATCTGAGA	.	90.0	21.0	256.0	0.0	.	52	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50450198	50450198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DCC	NM_005215	exon4	c.G819T	p.W273C	TACCTGGTTACGA	.	137.0	36.0	264.0	0.0	.	360	.	.	Atlas-SNP
KIAA1683	80726	hgsc.bcm.edu	hg19	19	18368011	18368011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KIAA1683	NM_001145304	exon4	c.C4083A	p.H1361Q	ATGCATGTGCCGT	.	39.0	13.0	115.0	0.0	.	190	.	.	Atlas-SNP
SLC7A9	11136	hgsc.bcm.edu	hg19	19	33324221	33324221	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC7A9	NM_001243036	exon12	c.A1233T	p.V411V	AATGACTACGGGC	.	152.0	45.0	430.0	1.0	.	78	.	.	Atlas-SNP
ZNF790	388536	hgsc.bcm.edu	hg19	19	37310028	37310028	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF790	NM_206894	exon5	c.C1218T	p.S406S	GTGTGAGCTCCAA	.	42.0	12.0	97.0	0.0	.	89	.	.	Atlas-SNP
ZNF790	388536	hgsc.bcm.edu	hg19	19	37310029	37310029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF790	NM_206894	exon5	c.G1217A	p.S406N	TGTGAGCTCCAAA	.	42.0	12.0	98.0	0.0	.	89	.	.	Atlas-SNP
ZNF420	147923	hgsc.bcm.edu	hg19	19	37582003	37582003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF420	NM_144689	exon4	c.A116G	p.Y39C	AGAACTATAGCAA	.	90.0	21.0	151.0	0.0	.	71	.	.	Atlas-SNP
RBM39	9584	hgsc.bcm.edu	hg19	20	34319990	34319990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RBM39	NM_184234	exon4	c.C169T	p.R57X	TACTTCGCTTCCG	.	57.0	18.0	143.0	0.0	.	68	.	.	Atlas-SNP
TTI1	9675	hgsc.bcm.edu	hg19	20	36634716	36634716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TTI1	NM_014657	exon4	c.C2386T	p.P796S	CTGCTGGTCTTTG	.	100.0	32.0	203.0	0.0	.	104	.	.	Atlas-SNP
SHANK3	85358	hgsc.bcm.edu	hg19	22	51169547	51169547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SHANK3	NM_033517	exon22	c.G4961T	p.W1654L	AGCTCTGGAGCAA	.	18.0	5.0	83.0	0.0	.	96	.	.	Atlas-SNP
ZNF711	7552	hgsc.bcm.edu	hg19	X	84526390	84526390	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF711	NM_021998	exon9	c.T1842C	p.T614T	CCATACTAAGGAT	.	85.0	49.0	200.0	1.0	.	198	.	.	Atlas-SNP
TCEAL8	90843	hgsc.bcm.edu	hg19	X	102508744	102508744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TCEAL8	NM_001006684	exon2	c.A164G	p.N55S	GGCTGATTCGGCC	.	75.0	4.0	184.0	0.0	.	15	.	.	Atlas-SNP
PHF6	84295	hgsc.bcm.edu	hg19	X	133527959	133527959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PHF6	NM_032335	exon5	c.A395G	p.K132R	AACACAAGAAAAC	.	51.0	27.0	126.0	0.0	.	176	.	.	Atlas-SNP
CR1L	1379	hgsc.bcm.edu	hg19	1	207872610	207872619	+	Frame_Shift_Del	DEL	GTGTGTGAAC	GTGTGTGAAC	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GTGTGTGAAC	GTGTGTGAAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CR1L	NM_175710	exon8	c.1218_1227del	p.406_409del	.	.	108.0	12.0	394.0	0.0	.	97	.	.	Atlas-INDEL
HS2ST1	9653	hgsc.bcm.edu	hg19	1	87563541	87563541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.608delC	p.A203fs	.	.	114.0	17.0	247.0	0.0	.	43	.	.	Atlas-INDEL
VPS39	23339	hgsc.bcm.edu	hg19	15	42476724	42476724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	VPS39	NM_015289	exon8	c.710delT	p.V237fs	.	.	114.0	41.0	263.0	0.0	.	53	.	.	Atlas-Indel,Pindel
KLHDC4	54758	hgsc.bcm.edu	hg19	16	87741993	87741994	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHDC4	NM_017566	exon11	c.1527_1528del	p.509_510del	.	.	44.0	10.0	98.0	0.0	.	45	.	.	Atlas-INDEL
ANKRD17	26057	hgsc.bcm.edu	hg19	4	74008379	74008379	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ANKRD17	NM_198889	exon12	c.2064delA	p.A688fs	.	.	53.0	19.0	81.0	0.0	.	214	.	.	Atlas-Indel,Pindel
FLT1	2321	hgsc.bcm.edu	hg19	13	28963881	28963881	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	FLT1	NM_001159920	exon13	c.2022delC	p.S674fs	.	.	33.0	15.0	50.0	0.0	.	393	.	.	Atlas-Indel,Pindel
ARHGEF10L	55160	hgsc.bcm.edu	hg19	1	17948399	17948422	+	In_Frame_Del	DEL	AAGGCAGCTACGTGGAGTCTCTGA	AAGGCAGCTACGTGGAGTCTCTGA	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	AAGGCAGCTACGTGGAGTCTCTGA	AAGGCAGCTACGTGGAGTCTCTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	ARHGEF10L_ENST00000361221,rectum,carcinoma,0,2	ARHGEF10L	NM_018125	exon11	c.982_1005del	p.328_335del	.	.	63.0	11.0	197.0	0.0	.	219	.	.	Atlas-Indel,Pindel
HS2ST1	9653	hgsc.bcm.edu	hg19	1	87563541	87563544	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.608_611del	p.203_204del	.	.	119.0	15.0	256.0	0.0	.	43	.	.	Pindel
CCT6B	10693	hgsc.bcm.edu	hg19	17	33281570	33281599	+	In_Frame_Del	DEL	TTATCTTTGCAGCTTCAAATCCTTCAGCTA	TTATCTTTGCAGCTTCAAATCCTTCAGCTA	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	TTATCTTTGCAGCTTCAAATCCTTCAGCTA	TTATCTTTGCAGCTTCAAATCCTTCAGCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CCT6B	NM_006584	exon4	c.357_386del	p.119_129del	.	.	36.0	10.0	95.0	0.0	.	63	.	.	Pindel
