Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIF21B	23046	hgsc.bcm.edu	hg19	1	200945972	200945972	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	KIF21B	NM_001252102	exon32	c.C4375T	p.L1459L	CCGTCAGGCACAT	.	33.0	13.0	52.0	0.0	.	208	.	.	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	hg19	1	226923399	226923399	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITPKB	NM_002221	exon2	c.A1761C	p.G587G	AGGGCTTCCCTGC	.	40.0	15.0	40.0	0.0	.	158	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11716535	11716535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GREB1	NM_148903	exon5	c.T511C	p.F171L	ACGGAATTCTCCA	.	165.0	37.0	147.0	0.0	.	308	.	.	Atlas-SNP
FAHD2B	151313	hgsc.bcm.edu	hg19	2	97751541	97751541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FAHD2B	NM_199336	exon5	c.C580T	p.R194C	AGTCACGAGCACT	.	98.0	44.0	137.0	0.0	.	34	.	.	Atlas-SNP
RNF149	284996	hgsc.bcm.edu	hg19	2	101911551	101911551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RNF149	NM_173647	exon2	c.A553G	p.I185V	CCCCTATGGTCAT	.	66.0	14.0	89.0	0.0	.	25	.	.	Atlas-SNP
STEAP3	55240	hgsc.bcm.edu	hg19	2	120005515	120005515	+	Silent	SNP	C	C	A	rs372658109	alternate_allele	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	STEAP3	NM_182915	exon4	c.C783A	p.P261P	GCTGCCCGTGTCC	.	43.0	21.0	32.0	0.0	.	44	.	.	Atlas-SNP
FIGN	55137	hgsc.bcm.edu	hg19	2	164468244	164468244	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	FIGN,NS,carcinoma,0,1	FIGN	NM_018086	exon3	c.G98C	p.R33P	GGAGACCGAGTGG	.	64.0	21.0	77.0	1.0	.	106	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216256381	216256381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FN1	NM_212482	exon26	c.C4226A	p.P1409H	TCTGAAGGAGAAA	.	66.0	21.0	44.0	0.0	.	521	.	.	Atlas-SNP
PRSS50	29122	hgsc.bcm.edu	hg19	3	46755757	46755757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PRSS50	NM_013270	exon4	c.G705T	p.K235N	ATGGTCCTTCAAC	.	39.0	20.0	31.0	0.0	.	35	.	.	Atlas-SNP
CHDH	55349	hgsc.bcm.edu	hg19	3	53851908	53851908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CHDH	NM_018397	exon9	c.A1681G	p.I561V	TCATGATTGTGGG	.	56.0	25.0	88.0	0.0	.	34	.	.	Atlas-SNP
TMPRSS7	344805	hgsc.bcm.edu	hg19	3	111764772	111764772	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TMPRSS7	NM_001042575	exon4	c.G334C	p.D112H	GACATGGACTCTG	.	151.0	45.0	177.0	0.0	.	126	.	.	Atlas-SNP
PTX3	5806	hgsc.bcm.edu	hg19	3	157160183	157160183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PTX3	NM_002852	exon3	c.G561A	p.M187I	CCCAATGCGTTCC	.	34.0	11.0	27.0	0.0	.	27	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164737493	164737493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SI	NM_001041	exon28	c.C3320A	p.P1107Q	TCTGATGGCAGGC	.	73.0	23.0	84.0	0.0	.	500	.	.	Atlas-SNP
TP63	8626	hgsc.bcm.edu	hg19	3	189526152	189526152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TP63	NM_001114979	exon4	c.C416T	p.A139V	ACCACGCGCAGAA	.	59.0	15.0	62.0	0.0	.	187	.	.	Atlas-SNP
WFS1	7466	hgsc.bcm.edu	hg19	4	6303650	6303650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	WFS1	NM_001145853	exon8	c.A2128C	p.T710P	CGCGTGACTGACA	.	34.0	11.0	31.0	0.0	.	71	.	.	Atlas-SNP
GUF1	60558	hgsc.bcm.edu	hg19	4	44693809	44693809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GUF1	NM_021927	exon13	c.T1606C	p.Y536H	TCTGGATATGCTA	.	41.0	15.0	59.0	0.0	.	72	.	.	Atlas-SNP
NFXL1	152518	hgsc.bcm.edu	hg19	4	47850329	47850329	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NFXL1	NM_152995	exon23	c.A2587T	p.R863X	TCAGTCTGTTTTC	.	114.0	36.0	146.0	0.0	.	79	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79295351	79295351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FRAS1	NM_001166133	exon25	c.G3097T	p.V1033F	CAGTGTGTCCAGG	.	33.0	21.0	59.0	0.0	.	779	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88535262	88535262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DSPP	NM_014208	exon5	c.A1448G	p.N483S	GTGACAATAACAG	.	37.0	24.0	87.0	0.0	.	174	.	.	Atlas-SNP
NPY5R	4889	hgsc.bcm.edu	hg19	4	164272303	164272303	+	Missense_Mutation	SNP	C	C	T	rs146231711		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NPY5R	NM_006174	exon4	c.C878T	p.T293I	AGAAGACAGCATG	.	15.0	9.0	55.0	0.0	.	101	.	C|1.000;T|0.000	Atlas-SNP
HELT	391723	hgsc.bcm.edu	hg19	4	185941802	185941802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	HELT	NM_001029887	exon4	c.C860T	p.A287V	GCCCAGCGCAGCA	.	16.0	13.0	11.0	0.0	.	34	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89948314	89948314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GPR98	NM_032119	exon19	c.C3568T	p.H1190Y	ATTCTCCATGCTT	.	72.0	39.0	148.0	0.0	.	605	.	.	Atlas-SNP
SLCO6A1	133482	hgsc.bcm.edu	hg19	5	101813521	101813521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLCO6A1	NM_173488	exon3	c.G661A	p.G221S	ATATACCACTGCT	.	25.0	17.0	95.0	0.0	.	153	.	.	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	hg19	5	115323605	115323605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_173800	exon4	c.G1074C	p.L358F	GGATTTGTTTAAT	.	95.0	13.0	186.0	0.0	.	.	.	.	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	hg19	5	140215989	140215989	+	Missense_Mutation	SNP	A	A	T	rs370529939	alternate_allele	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCDHA7	NM_031852	exon1	c.A2021T	p.Q674L	GCGGCCAGGCACC	.	24.0	15.0	26.0	0.0	.	367	.	.	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	hg19	5	140573688	140573688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCDHB10	NM_018930	exon1	c.C1563A	p.Y521X	GGACTACGAGGCC	.	59.0	17.0	71.0	0.0	.	177	.	.	Atlas-SNP
DDR1	780	hgsc.bcm.edu	hg19	6	30866689	30866689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DDR1	NM_013994	exon16	c.G2494T	p.V832L	AGTGACGTGTGGG	.	78.0	31.0	83.0	0.0	.	213	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	hg19	6	33639857	33639857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITPR3	NM_002224	exon22	c.T2780C	p.M927T	CCACCATGGTGCT	.	31.0	11.0	33.0	0.0	.	409	.	.	Atlas-SNP
KHDC3L	154288	hgsc.bcm.edu	hg19	6	74072885	74072885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_001017361	exon2	c.G237T	p.L79F	TCGATTGGACCCT	.	32.0	10.0	43.0	0.0	.	.	.	.	Atlas-SNP
KHDC3L	154288	hgsc.bcm.edu	hg19	6	74072886	74072886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_001017361	exon2	c.G238T	p.D80Y	CGATTGGACCCTA	.	33.0	11.0	43.0	0.0	.	.	.	.	Atlas-SNP
IMPG1	3617	hgsc.bcm.edu	hg19	6	76720891	76720891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	IMPG1	NM_001563	exon8	c.A858T	p.L286F	AAATCCTAACACA	.	86.0	36.0	116.0	0.0	.	143	.	.	Atlas-SNP
MAP3K7	6885	hgsc.bcm.edu	hg19	6	91269811	91269811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MAP3K7	NM_145333	exon5	c.G466T	p.D156Y	TCAGGTCCCTGTG	.	93.0	46.0	169.0	0.0	.	100	.	.	Atlas-SNP
EPHA7	2045	hgsc.bcm.edu	hg19	6	94120578	94120578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	EPHA7	NM_004440	exon3	c.G473A	p.G158D	AGGTCACCTTGGG	.	80.0	28.0	131.0	0.0	.	251	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101166124	101166124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ASCC3	NM_006828	exon12	c.G1906A	p.E636K	TGGATTCCACCTA	.	49.0	19.0	75.0	0.0	.	205	.	.	Atlas-SNP
TAAR1	134864	hgsc.bcm.edu	hg19	6	132966704	132966704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TAAR1	NM_138327	exon1	c.A439G	p.S147G	TCCAACTAATGAA	.	49.0	17.0	77.0	0.0	.	41	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48431663	48431663	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	ABCA13_ENST00000435803,trunk,malignant_melanoma,0,2	ABCA13	NM_152701	exon38	c.G11800T	p.E3934X	GTCCGGGAACATT	.	56.0	21.0	67.0	0.0	.	1192	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82531973	82531973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCLO	NM_014510	exon9	c.G13522A	p.V4508I	CTGAAACTGTGTG	.	78.0	27.0	119.0	0.0	.	1506	.	.	Atlas-SNP
HEPACAM2	253012	hgsc.bcm.edu	hg19	7	92837990	92837990	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	HEPACAM2	NM_001039372	exon4	c.A915T	p.K305N	GGCTACTTTCTCA	.	97.0	32.0	134.0	0.0	.	132	.	.	Atlas-SNP
TNKS	8658	hgsc.bcm.edu	hg19	8	9538246	9538246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TNKS	NM_003747	exon5	c.A1043T	p.E348V	GTAATGAAGAAAA	.	121.0	46.0	143.0	0.0	.	198	.	.	Atlas-SNP
GATA4	2626	hgsc.bcm.edu	hg19	8	11615852	11615852	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GATA4	NM_002052	exon7	c.C1197T	p.V399V	CCCTGTCCTCTCG	.	40.0	15.0	43.0	0.0	.	29	.	.	Atlas-SNP
ADAM18	8749	hgsc.bcm.edu	hg19	8	39505913	39505913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ADAM18	NM_014237	exon12	c.G1097C	p.R366T	ACTATAGATATTT	.	163.0	12.0	146.0	0.0	.	169	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77768145	77768145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZFHX4	NM_024721	exon10	c.G8988A	p.M2996I	TTTCATGATCAAT	.	52.0	20.0	55.0	0.0	.	878	.	.	Atlas-SNP
INSL4	3641	hgsc.bcm.edu	hg19	9	5231621	5231621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	INSL4	NM_002195	exon1	c.C98A	p.P33H	GTGGTCCCCGATT	.	48.0	11.0	55.0	0.0	.	20	.	.	Atlas-SNP
DNAJB5	25822	hgsc.bcm.edu	hg19	9	34993331	34993331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DNAJB5	NM_001135004	exon3	c.A443C	p.D148A	ACCCAGACAAGAA	.	43.0	16.0	46.0	0.0	.	69	.	.	Atlas-SNP
TLE4	7091	hgsc.bcm.edu	hg19	9	82267541	82267541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TLE4	NM_007005	exon7	c.C424A	p.H142N	CATGGACATGGTC	.	69.0	16.0	88.0	0.0	.	187	.	.	Atlas-SNP
ZCCHC6	79670	hgsc.bcm.edu	hg19	9	88967620	88967620	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZCCHC6	NM_024617	exon2	c.G495T	p.T165T	TTCTGACGTGGTT	.	140.0	37.0	201.0	0.0	.	105	.	.	Atlas-SNP
SPATA31C2	645961	hgsc.bcm.edu	hg19	9	90746827	90746827	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_001166137	exon4	c.T1125C	p.T375T	TACTCCAGTGTTC	.	73.0	38.0	87.0	0.0	.	.	.	.	Atlas-SNP
TSTD2	158427	hgsc.bcm.edu	hg19	9	100365038	100365038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TSTD2	NM_139246	exon10	c.T1264C	p.C422R	CTCCACAGTATGA	.	63.0	26.0	91.0	0.0	.	42	.	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	hg19	9	137630354	137630354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	COL5A1	NM_000093	exon10	c.G1424A	p.G475D	CAGAAGGCCCCGC	.	40.0	26.0	37.0	0.0	.	323	.	.	Atlas-SNP
NELFB	25920	hgsc.bcm.edu	hg19	9	140158810	140158810	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_015456	exon6	c.896+1G>T	.	GCTGGGGTGAGGG	.	30.0	19.0	22.0	0.0	.	.	.	.	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	375432	375432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DIP2C	NM_014974	exon30	c.T3694C	p.S1232P	AGTAGGAGCAAAA	.	16.0	7.0	30.0	0.0	.	195	.	.	Atlas-SNP
TRDMT1	1787	hgsc.bcm.edu	hg19	10	17202313	17202313	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRDMT1	NM_004412	exon6	c.T450C	p.S150S	GGTTGGAGATAAT	.	121.0	38.0	198.0	0.0	.	46	.	.	Atlas-SNP
FAM13C	220965	hgsc.bcm.edu	hg19	10	61028335	61028335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FAM13C	NM_198215	exon8	c.T920C	p.F307S	TGTTCAAATTTTT	.	66.0	13.0	92.0	0.0	.	124	.	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	hg19	10	108459041	108459041	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SORCS1	NM_001206572	exon9	c.C1344T	p.F448F	CAGGGTGAAGTAG	.	51.0	19.0	92.0	0.0	.	534	.	.	Atlas-SNP
OR4C46	119749	hgsc.bcm.edu	hg19	11	51515655	51515655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OR4C46	NM_001004703	exon1	c.G374T	p.C125F	CCATCTGCAAGCC	.	70.0	38.0	100.0	0.0	.	96	.	.	Atlas-SNP
PPFIBP1	8496	hgsc.bcm.edu	hg19	12	27787982	27787982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PPFIBP1	NM_003622	exon4	c.A204T	p.E68D	GAAAGAAGGCTTG	.	91.0	33.0	78.0	0.0	.	153	.	.	Atlas-SNP
IPO8	10526	hgsc.bcm.edu	hg19	12	30816574	30816574	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	IPO8	NM_006390	exon14	c.T1443G	p.L481L	TGCATGAAGTACC	.	28.0	13.0	22.0	0.0	.	105	.	.	Atlas-SNP
XPOT	11260	hgsc.bcm.edu	hg19	12	64814173	64814173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	XPOT	NM_007235	exon8	c.C715A	p.L239I	GAAGTTCTACGGG	.	72.0	25.0	76.0	0.0	.	105	.	.	Atlas-SNP
SLC6A15	55117	hgsc.bcm.edu	hg19	12	85277689	85277689	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLC6A15	NM_018057	exon5	c.C705A	p.A235A	GACCCAGGCAGCC	.	48.0	21.0	60.0	0.0	.	159	.	.	Atlas-SNP
ACTR6	64431	hgsc.bcm.edu	hg19	12	100594687	100594687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ACTR6	NM_022496	exon1	c.G58A	p.E20K	AGCCATGAAAATG	.	43.0	11.0	43.0	0.0	.	29	.	.	Atlas-SNP
SH2B3	10019	hgsc.bcm.edu	hg19	12	111885820	111885820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SH2B3	NM_005475	exon8	c.T1442C	p.L481P	TCTCCCTTCCTCA	.	32.0	9.0	47.0	0.0	.	62	.	.	Atlas-SNP
TMEM132B	114795	hgsc.bcm.edu	hg19	12	125834213	125834213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TMEM132B	NM_052907	exon2	c.C268T	p.P90S	TATGGCCCATTTT	.	67.0	20.0	51.0	0.0	.	207	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39263789	39263789	+	Missense_Mutation	SNP	G	G	T	rs7327915	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FREM2	NM_207361	exon1	c.G2308T	p.V770L	TCAGTCGTGGTGA	.	35.0	18.0	52.0	0.0	.	385	.	G|0.960;A|0.040	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102446826	102446826	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DYNC1H1	NM_001376	exon5	c.T900G	p.T300T	CCTGACTCTGGAT	.	28.0	11.0	50.0	0.0	.	395	.	.	Atlas-SNP
PLD4	122618	hgsc.bcm.edu	hg19	14	105398614	105398614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PLD4	NM_138790	exon10	c.G1243T	p.V415L	GTGCCGGTGGGGA	.	34.0	13.0	39.0	0.0	.	46	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33895514	33895514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RYR3	NM_001243996	exon18	c.G2113T	p.V705F	AATGGTGTTGGTG	.	41.0	29.0	100.0	0.0	.	760	.	.	Atlas-SNP
NGFR	4804	hgsc.bcm.edu	hg19	17	47587941	47587941	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NGFR	NM_002507	exon4	c.G736C	p.G246R	ACCCGAGGCACCA	.	30.0	15.0	33.0	0.0	.	46	.	.	Atlas-SNP
ABCA5	23461	hgsc.bcm.edu	hg19	17	67287403	67287403	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ABCA5	NM_018672	exon11	c.G1560A	p.K520K	TGTACTCTTTCCT	.	58.0	18.0	101.0	0.0	.	162	.	.	Atlas-SNP
ITGB4	3691	hgsc.bcm.edu	hg19	17	73723340	73723340	+	Missense_Mutation	SNP	G	G	T	rs146966502	bycluster	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITGB4	NM_001005731	exon3	c.G145T	p.A49S	GACTGCGCCTACT	.	36.0	11.0	46.0	0.0	.	165	.	A|0.000;G|1.000	Atlas-SNP
SEPT9	10801	hgsc.bcm.edu	hg19	17	75303253	75303253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SEPT9	NM_001113491	exon2	c.G50C	p.R17P	GGCTCCGGAGGCT	.	33.0	17.0	42.0	0.0	.	105	.	.	Atlas-SNP
CBX4	8535	hgsc.bcm.edu	hg19	17	77808471	77808471	+	Missense_Mutation	SNP	G	G	A	rs138355116		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	CBX4,abdomen,malignant_melanoma,0,1	CBX4	NM_003655	exon5	c.C970T	p.P324S	TGGGCGGCGCCTC	.	27.0	11.0	39.0	0.0	.	40	.	.	Atlas-SNP
VAV1	7409	hgsc.bcm.edu	hg19	19	6833726	6833726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	VAV1	NM_005428	exon18	c.C1713A	p.F571L	AGATTTCCCAGGA	.	28.0	15.0	36.0	0.0	.	140	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	38960151	38960151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	RYR1,right_lower_lobe,carcinoma,0,1	RYR1	NM_001042723	exon27	c.G3763A	p.E1255K	CACTATGAGGTAA	.	19.0	13.0	29.0	0.0	.	708	.	.	Atlas-SNP
RPL18	6141	hgsc.bcm.edu	hg19	19	49121059	49121059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RPL18	NM_000979	exon2	c.C79A	p.L27M	CCAACAGCCTCAG	.	42.0	27.0	46.0	0.0	.	9	.	.	Atlas-SNP
ZNF28	7576	hgsc.bcm.edu	hg19	19	53303883	53303883	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF28	NM_006969	exon4	c.T1215C	p.H405H	TCCAGTATGAATC	.	46.0	30.0	52.0	0.0	.	191	.	.	Atlas-SNP
LENG8	114823	hgsc.bcm.edu	hg19	19	54966690	54966690	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	LENG8	NM_052925	exon8	c.G969A	p.A323A	GCAGGCGCGGCTG	.	22.0	8.0	25.0	0.0	.	73	.	.	Atlas-SNP
ZSCAN5B	342933	hgsc.bcm.edu	hg19	19	56704398	56704398	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZSCAN5B	NM_001080456	exon1	c.A24T	p.S8S	ACCCCATGAGAGT	.	38.0	6.0	46.0	0.0	.	160	.	.	Atlas-SNP
ZNF582	147948	hgsc.bcm.edu	hg19	19	56896171	56896171	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF582	NM_144690	exon5	c.G615A	p.G205G	GGCCTTCCCACAT	.	70.0	16.0	70.0	0.0	.	56	.	.	Atlas-SNP
TTLL12	23170	hgsc.bcm.edu	hg19	22	43575637	43575637	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TTLL12	NM_015140	exon5	c.C828T	p.A276A	GTGCTCGGCGGGC	.	20.0	9.0	24.0	0.0	.	50	.	.	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10086	10086	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	ENST00000361227	exon1	c.A28C	p.N10H	ATAATCAACACCC	.	471.0	67.0	152.0	0.0	.	.	.	.	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	hg19	17	74382080	74382096	+	Frame_Shift_Del	DEL	GGCGTGCTCCCGCGGCC	GGCGTGCTCCCGCGGCC	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GGCGTGCTCCCGCGGCC	GGCGTGCTCCCGCGGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SPHK1	NM_182965	exon3	c.282_298del	p.94_100del	.	.	26.0	10.0	32.0	0.0	.	24	.	.	Atlas-INDEL
SLCO1C1	53919	hgsc.bcm.edu	hg19	12	20893142	20893145	+	Frame_Shift_Del	DEL	GGAA	GGAA	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GGAA	GGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLCO1C1	NM_017435	exon12	c.1572_1575del	p.524_525del	.	.	77.0	28.0	99.0	0.0	.	216	.	.	Atlas-Indel,Pindel
TOB1	10140	hgsc.bcm.edu	hg19	17	48940660	48940661	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TOB1	NM_005749	exon2	c.719_720insGC	p.P240fs	.	.	29.0	10.0	36.0	0.0	.	40	.	.	Atlas-INDEL
SYNE2	23224	hgsc.bcm.edu	hg19	14	64593080	64593089	+	Frame_Shift_Del	DEL	TAAAAAATTG	TAAAAAATTG	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	TAAAAAATTG	TAAAAAATTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SYNE2	NM_182914	exon72	c.13589_13598del	p.4530_4533del	.	.	58.0	18.0	65.0	0.0	.	577	.	.	Atlas-Indel,Pindel
MYO3A	53904	hgsc.bcm.edu	hg19	10	26462717	26462717	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MYO3A	NM_017433	exon30	c.3523delA	p.T1175fs	.	.	59.0	27.0	73.0	0.0	.	371	.	.	Atlas-Indel,Pindel
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57080487	57080489	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TNKS1BP1	NM_033396	exon5	c.1674_1676del	p.558_559del	.	.	43.0	15.0	68.0	0.0	.	148	.	.	Atlas-Indel,Pindel
ZNF845	91664	hgsc.bcm.edu	hg19	19	53855612	53855612	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF845	NM_138374	exon4	c.1683delT	p.R561fs	.	.	45.0	25.0	52.0	0.0	.	101	.	.	Atlas-Indel,Pindel
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102548666	102548670	+	Frame_Shift_Del	DEL	GTTGA	GTTGA	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GTTGA	GTTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	HSP90AA1	NM_001017963	exon11	c.2234_2238del	p.745_746del	.	.	63.0	18.0	82.0	0.0	.	65	.	.	Pindel
TP53	7157	hgsc.bcm.edu	hg19	17	7578264	7578270	+	Frame_Shift_Del	DEL	GATAAGA	GATAAGA	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GATAAGA	GATAAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	TP53_ENST00000545858,NS,adenocarcinoma,0,1	TP53	NM_001126112	exon6	c.580_586del	p.194_196del	.	.	24.0	10.0	60.0	0.0	.	33396	.	.	Pindel
