Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TPRG1L	127262	hgsc.bcm.edu	hg19	1	3542011	3542011	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TPRG1L	NM_182752	exon2	c.G225A	p.V75V	GGCAGTGGAGGAG	.	173.0	73.0	202.0	0.0	.	24	.	.	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	hg19	1	6209325	6209325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CHD5	NM_015557	exon8	c.A1142C	p.K381T	CTCCACTTGCCCT	.	88.0	43.0	73.0	0.0	.	267	.	.	Atlas-SNP
UBE4B	10277	hgsc.bcm.edu	hg19	1	10195205	10195205	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	UBE4B	NM_001105562	exon16	c.G2185C	p.A729P	GTGAATGCAACGA	.	126.0	56.0	120.0	0.0	.	233	.	.	Atlas-SNP
EPHA8	2046	hgsc.bcm.edu	hg19	1	22902776	22902776	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	EPHA8	NM_020526	exon3	c.A226C	p.M76L	AACGTCATGAGCC	.	275.0	109.0	262.0	0.0	.	221	.	.	Atlas-SNP
HMGCL	3155	hgsc.bcm.edu	hg19	1	24147006	24147006	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HMGCL	NM_000191	exon2	c.T138G	p.N46K	CTTTTCATTTTGT	.	122.0	50.0	161.0	0.0	.	22	.	.	Atlas-SNP
HMGCL	3155	hgsc.bcm.edu	hg19	1	24147010	24147010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HMGCL	NM_000191	exon2	c.A134T	p.Q45L	TCATTTTGTAGTC	.	123.0	12.0	159.0	0.0	.	22	.	.	Atlas-SNP
RNF19B	127544	hgsc.bcm.edu	hg19	1	33430200	33430200	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RNF19B	NM_001127361	exon1	c.G87A	p.R29R	CCGGCGCCGGCCG	.	41.0	21.0	27.0	0.0	.	43	.	.	Atlas-SNP
GJB5	2709	hgsc.bcm.edu	hg19	1	35223441	35223441	+	Silent	SNP	C	C	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	GJB5	NM_005268	exon2	c.C510G	p.P170P	ATGTCCCAATATA	.	58.0	22.0	86.0	0.0	.	35	.	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	hg19	1	41976245	41976245	+	Silent	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HIVEP3	NM_024503	exon9	c.A7098T	p.P2366P	CCGGGCTGGGAAG	.	79.0	23.0	119.0	0.0	.	235	.	.	Atlas-SNP
MAST2	23139	hgsc.bcm.edu	hg19	1	46269721	46269721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	MAST2	NM_015112	exon1	c.G154A	p.A52T	GGCCCCGCGGGGC	.	222.0	78.0	166.0	0.0	.	136	.	.	Atlas-SNP
ZFYVE9	9372	hgsc.bcm.edu	hg19	1	52705044	52705044	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ZFYVE9	NM_007323	exon4	c.A1955T	p.Y652F	AAAGTTATGAGGC	.	175.0	67.0	141.0	0.0	.	131	.	.	Atlas-SNP
GLIS1	148979	hgsc.bcm.edu	hg19	1	53995579	53995579	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	GLIS1	NM_147193	exon4	c.T842G	p.I281S	AGGTGGATCTTGA	.	49.0	20.0	63.0	0.0	.	52	.	.	Atlas-SNP
SLC35D1	23169	hgsc.bcm.edu	hg19	1	67518480	67518480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SLC35D1	NM_015139	exon3	c.G298A	p.D100N	CAAGGTCAGGAAA	.	144.0	58.0	129.0	0.0	.	22	.	.	Atlas-SNP
ACADM	34	hgsc.bcm.edu	hg19	1	76216231	76216231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ACADM	NM_001127328	exon10	c.G957C	p.E319D	TGTAGAGGTAATT	.	131.0	14.0	94.0	0.0	.	50	.	.	Atlas-SNP
ADAM30	11085	hgsc.bcm.edu	hg19	1	120436684	120436684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ADAM30	NM_021794	exon1	c.A2276G	p.Q759R	TCTTCCTGTCCAG	.	162.0	72.0	171.0	0.0	.	88	.	.	Atlas-SNP
PGLYRP4	57115	hgsc.bcm.edu	hg19	1	153315636	153315636	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PGLYRP4	NM_020393	exon5	c.T402A	p.N134K	TTGGATATTCCAG	.	250.0	69.0	183.0	0.0	.	45	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155451459	155451459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ASH1L	NM_018489	exon3	c.A1202T	p.N401I	TCCTTATTAACCA	.	104.0	31.0	70.0	0.0	.	279	.	.	Atlas-SNP
METTL18	92342	hgsc.bcm.edu	hg19	1	169762137	169762137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	METTL18	NM_033418	exon2	c.A700T	p.N234Y	TGGAGTTAGCTAC	.	279.0	85.0	160.0	0.0	.	23	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171511016	171511016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_015172	exon16	c.G4405A	p.V1469I	GAACCAGTTAATA	.	247.0	79.0	190.0	0.0	.	.	.	.	Atlas-SNP
RASAL2	9462	hgsc.bcm.edu	hg19	1	178408712	178408712	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RASAL2	NM_170692	exon6	c.828+2T>C	.	TTGAGGTAAAAAT	.	154.0	39.0	85.0	0.0	.	334	.	.	Atlas-SNP
ABL2	27	hgsc.bcm.edu	hg19	1	179112161	179112161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ABL2	NM_001136000	exon1	c.C19A	p.L7I	GAAGGAGAACTGT	.	170.0	44.0	126.0	0.0	.	307	.	.	Atlas-SNP
CAMSAP2	23271	hgsc.bcm.edu	hg19	1	200819254	200819254	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_203459	exon11	c.T3357C	p.D1119D	CTCAGATTTGAAA	.	300.0	163.0	211.0	0.0	.	.	.	.	Atlas-SNP
PTPN7	5778	hgsc.bcm.edu	hg19	1	202119444	202119444	+	Silent	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PTPN7	NM_002832	exon9	c.A1299C	p.L433L	CCTGTCTAGCCGC	.	105.0	30.0	114.0	0.0	.	31	.	.	Atlas-SNP
LGR6	59352	hgsc.bcm.edu	hg19	1	202163198	202163198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LGR6	NM_001017403	exon1	c.G81T	p.Q27H	CCCCCAGCCCGGC	.	28.0	9.0	15.0	0.0	.	102	.	.	Atlas-SNP
SYT14	255928	hgsc.bcm.edu	hg19	1	210334239	210334239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SYT14	NM_001146261	exon10	c.A1712G	p.N571S	TGTATAACAAACG	.	181.0	49.0	159.0	0.0	.	89	.	.	Atlas-SNP
SPATA17	128153	hgsc.bcm.edu	hg19	1	217822303	217822303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SPATA17	NM_138796	exon2	c.G148A	p.A50T	GTTCGGGCATATA	.	168.0	93.0	90.0	0.0	.	59	.	.	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247027263	247027263	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	AHCTF1	NM_015446	exon27	c.C3530A	p.S1177X	AATTCTGAAGCCC	.	318.0	28.0	198.0	0.0	.	187	.	.	Atlas-SNP
OR2G2	81470	hgsc.bcm.edu	hg19	1	247751681	247751681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	OR2G2	NM_001001915	exon1	c.C20A	p.T7N	GACATACCAATGA	.	171.0	51.0	113.0	0.0	.	88	.	.	Atlas-SNP
OR2T3	343173	hgsc.bcm.edu	hg19	1	248637531	248637531	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	OR2T3	NM_001005495	exon1	c.A880T	p.I294F	CCCCTCATTTACA	.	1255.0	159.0	912.0	0.0	.	79	.	.	Atlas-SNP
RSAD2	91543	hgsc.bcm.edu	hg19	2	7017965	7017965	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RSAD2	NM_080657	exon1	c.A34T	p.K12X	GCTGGGAAGCTCT	.	131.0	40.0	72.0	0.0	.	38	.	.	Atlas-SNP
PDIA6	10130	hgsc.bcm.edu	hg19	2	10937247	10937247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PDIA6	NM_005742	exon4	c.G306T	p.K102N	AAAAATCTTAATG	.	163.0	46.0	119.0	0.0	.	31	.	.	Atlas-SNP
UBXN2A	165324	hgsc.bcm.edu	hg19	2	24199886	24199886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	UBXN2A	NM_181713	exon4	c.C228G	p.D76E	CAACGACGATTTC	.	110.0	22.0	48.0	0.0	.	20	.	.	Atlas-SNP
NCOA1	8648	hgsc.bcm.edu	hg19	2	24929659	24929659	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	NCOA1	NM_147223	exon11	c.T1320C	p.S440S	AGGAAGTTTCGGA	.	180.0	47.0	148.0	0.0	.	210	.	.	Atlas-SNP
SNX17	9784	hgsc.bcm.edu	hg19	2	27598432	27598432	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SNX17	NM_014748	exon10	c.G834A	p.V278V	CTGTGTGGCTGAC	.	111.0	26.0	68.0	0.0	.	40	.	.	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33498742	33498742	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LTBP1	NM_206943	exon16	c.G2637A	p.V879V	TACTGTGAACCCT	.	105.0	36.0	106.0	0.0	.	317	.	.	Atlas-SNP
VPS54	51542	hgsc.bcm.edu	hg19	2	64126619	64126619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	VPS54,colon,carcinoma,0,1	VPS54	NM_016516	exon21	c.G2722A	p.E908K	TTTGTTCTTCTGG	.	66.0	25.0	58.0	0.0	.	57	.	.	Atlas-SNP
IMMT	10989	hgsc.bcm.edu	hg19	2	86385747	86385747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	IMMT	NM_006839	exon10	c.C1130A	p.T377N	TCTGGAGTAATAC	.	123.0	46.0	125.0	0.0	.	65	.	.	Atlas-SNP
POTEE	445582	hgsc.bcm.edu	hg19	2	131984418	131984418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_001083538	exon4	c.T833G	p.L278R	TGTTACTTGGTGT	.	384.0	112.0	321.0	0.0	.	.	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	hg19	2	153192209	153192209	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	FMNL2	NM_052905	exon1	c.T92A	p.L31Q	GTGAACTGGAGGA	.	333.0	153.0	299.0	0.0	.	75	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168100314	168100314	+	Silent	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	XIRP2	NM_152381	exon9	c.G2412T	p.G804G	AGGTGGGGTGAGT	.	409.0	187.0	403.0	0.0	.	914	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168100315	168100315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	XIRP2	NM_152381	exon9	c.G2413T	p.V805L	GGTGGGGTGAGTA	.	405.0	186.0	400.0	1.0	.	914	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179638708	179638708	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TTN	NM_001267550	exon31	c.A7187T	p.Q2396L	CTGGGCTGCACTT	.	112.0	45.0	103.0	0.0	.	18412	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216243896	216243896	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	FN1	NM_212482	exon34	c.A5579T	p.N1860I	GCAAGGTTGATTT	.	195.0	30.0	159.0	0.0	.	521	.	.	Atlas-SNP
HRH1	3269	hgsc.bcm.edu	hg19	3	11300884	11300884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HRH1	NM_000861	exon3	c.G161T	p.S54I	TACGGAGTGAGCG	.	149.0	66.0	136.0	0.0	.	58	.	.	Atlas-SNP
NKTR	4820	hgsc.bcm.edu	hg19	3	42678871	42678871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	NKTR	NM_005385	exon13	c.C1675A	p.H559N	TCTGGGCACCGAA	.	319.0	143.0	264.0	0.0	.	116	.	.	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49166162	49166162	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LAMB2	NM_002292	exon14	c.C1822T	p.L608L	ACTCCAGGGTCTG	.	96.0	46.0	74.0	0.0	.	156	.	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	hg19	3	49694957	49694957	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	BSN,NS,carcinoma,0,1	BSN	NM_003458	exon5	c.C7968A	p.A2656A	TGCTGCCACTGTG	.	157.0	63.0	141.0	0.0	.	272	.	.	Atlas-SNP
TRMT10C	54931	hgsc.bcm.edu	hg19	3	101284684	101284684	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_017819	exon2	c.A1059G	p.L353L	CACCTTAGATCAA	.	133.0	54.0	119.0	0.0	.	.	.	.	Atlas-SNP
GOLGB1	2804	hgsc.bcm.edu	hg19	3	121409566	121409566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	GOLGB1	NM_001256486	exon14	c.A8645T	p.Q2882L	AAACTCTGTACTT	.	63.0	23.0	65.0	0.0	.	319	.	.	Atlas-SNP
UROC1	131669	hgsc.bcm.edu	hg19	3	126236538	126236538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	UROC1	NM_001165974	exon1	c.T25G	p.S9A	GGCCAGAGCACAG	.	214.0	104.0	208.0	0.0	.	150	.	.	Atlas-SNP
PODXL2	50512	hgsc.bcm.edu	hg19	3	127391218	127391218	+	Silent	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PODXL2	NM_015720	exon8	c.G1713T	p.L571L	CAGCCTGAACGGC	.	84.0	32.0	90.0	0.0	.	53	.	.	Atlas-SNP
PPP2R3A	5523	hgsc.bcm.edu	hg19	3	135721279	135721279	+	Silent	SNP	T	T	C	rs35214119	bycluster;byfrequency;alternate_allele	TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PPP2R3A	NM_002718	exon2	c.T939C	p.N313N	CAGTAATATGCCT	.	154.0	60.0	117.0	0.0	.	114	.	T|1.000;G|0.000	Atlas-SNP
TBL1XR1	79718	hgsc.bcm.edu	hg19	3	176750884	176750884	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TBL1XR1	NM_024665	exon14	c.C1291T	p.R431X	TCCCTCGGTCTAC	.	294.0	117.0	283.0	0.0	.	87	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	bycluster	TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044	PIK3CA	NM_006218	exon21	c.A3140T	p.H1047L	ATGCACATCATGG	.	178.0	77.0	182.0	0.0	.	8460	.	.	Atlas-SNP
HRG	3273	hgsc.bcm.edu	hg19	3	186395095	186395095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HRG	NM_000412	exon7	c.C1001T	p.T334I	TTGGCACAAATGG	.	164.0	76.0	160.0	0.0	.	81	.	.	Atlas-SNP
LCORL	254251	hgsc.bcm.edu	hg19	4	17885695	17885695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LCORL	NM_001166139	exon7	c.C1457G	p.P486R	CACAAAGGAGAGA	.	240.0	99.0	202.0	0.0	.	60	.	.	Atlas-SNP
GABRA2	2555	hgsc.bcm.edu	hg19	4	46305505	46305505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	GABRA2	NM_000807	exon8	c.A828T	p.R276S	AGATTCTCTGTTA	.	315.0	144.0	273.0	1.0	.	134	.	.	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57181349	57181349	+	Missense_Mutation	SNP	G	G	A	rs370638037		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	KIAA1211	NM_020722	exon8	c.G1681A	p.A561T	ACGCCCGCAAAGG	.	155.0	59.0	144.0	0.0	.	178	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74285253	74285253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ALB	NM_000477	exon13	c.C1682G	p.P561R	ACAAGCCCAAGGC	.	104.0	34.0	116.0	0.0	.	132	.	.	Atlas-SNP
CDS1	1040	hgsc.bcm.edu	hg19	4	85569727	85569727	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CDS1	NM_001263	exon13	c.A1274C	p.K425T	CCAGCAAAGTGCT	.	147.0	107.0	277.0	0.0	.	58	.	.	Atlas-SNP
C4orf21	55345	hgsc.bcm.edu	hg19	4	113538660	113538660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	C4orf21	NM_018392	exon6	c.A2538T	p.K846N	TTTCTTTTTCAAT	.	254.0	108.0	213.0	0.0	.	223	.	.	Atlas-SNP
SPATA5	166378	hgsc.bcm.edu	hg19	4	123868516	123868516	+	Silent	SNP	G	G	A	rs140187138	alternate_allele	TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SPATA5	NM_145207	exon9	c.G1587A	p.R529R	GGACCGGCTAGAT	.	107.0	40.0	101.0	0.0	.	62	.	G|1.000;T|0.000	Atlas-SNP
PHF17	79960	hgsc.bcm.edu	hg19	4	129782877	129782877	+	Missense_Mutation	SNP	C	C	T	rs369651997		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PHF17	NM_199320	exon9	c.C1000T	p.R334C	AACTGCCGCACAG	.	138.0	59.0	115.0	0.0	.	63	.	.	Atlas-SNP
TBC1D9	23158	hgsc.bcm.edu	hg19	4	141600769	141600769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TBC1D9	NM_015130	exon4	c.G589A	p.A197T	ACTTACCTTCCCT	.	168.0	69.0	127.0	0.0	.	198	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155163890	155163890	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	DCHS2	NM_017639	exon22	c.A5611T	p.R1871W	AAAGCCTGGGCAT	.	58.0	30.0	65.0	0.0	.	594	.	.	Atlas-SNP
TRIML1	339976	hgsc.bcm.edu	hg19	4	189068011	189068011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TRIML1	NM_178556	exon6	c.T892A	p.Y298N	AATGCCTATCTCG	.	182.0	69.0	168.0	0.0	.	126	.	.	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	hg19	5	14394211	14394211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TRIO	NM_007118	exon28	c.G4283A	p.R1428Q	TTCAGCGAATAAC	.	188.0	73.0	160.0	0.0	.	305	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52376395	52376395	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ITGA2	NM_002203	exon25	c.C2983T	p.Q995X	ATCCCTCAGTATA	.	136.0	55.0	159.0	0.0	.	211	.	.	Atlas-SNP
FST	10468	hgsc.bcm.edu	hg19	5	52776658	52776658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	FST	NM_013409	exon1	c.C37G	p.L13V	CTTTGCCTCCTGC	.	83.0	40.0	65.0	0.0	.	42	.	.	Atlas-SNP
BHMT2	23743	hgsc.bcm.edu	hg19	5	78379661	78379661	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	BHMT2	NM_017614	exon7	c.A992C	p.K331T	ACACCAAACCCTG	.	308.0	109.0	293.0	0.0	.	44	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90079735	90079735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	GPR98	NM_032119	exon67	c.T13514C	p.I4505T	GCAGAATCATAAT	.	127.0	53.0	117.0	0.0	.	605	.	.	Atlas-SNP
VDAC1	7416	hgsc.bcm.edu	hg19	5	133326695	133326695	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	VDAC1	NM_003374	exon4	c.C268T	p.Q90X	TTACCTGATCTTC	.	96.0	41.0	100.0	0.0	.	17	.	.	Atlas-SNP
TGFBI	7045	hgsc.bcm.edu	hg19	5	135389646	135389646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TGFBI	NM_000358	exon9	c.G1141A	p.E381K	CTATTTGAATTGG	.	98.0	35.0	80.0	0.0	.	76	.	.	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	hg19	5	137708413	137708413	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	KDM3B	NM_016604	exon2	c.A243G	p.K81K	GGTAAAAGTTCAT	.	135.0	61.0	128.0	0.0	.	177	.	.	Atlas-SNP
LCP2	3937	hgsc.bcm.edu	hg19	5	169693828	169693828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LCP2	NM_005565	exon10	c.A756C	p.R252S	GGGTTCTCTATCA	.	177.0	65.0	153.0	0.0	.	133	.	.	Atlas-SNP
HNRNPH1	3187	hgsc.bcm.edu	hg19	5	179046347	179046347	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HNRNPH1	NM_001257293	exon5	c.G459A	p.G153G	GGCCTCCCCCGTA	.	196.0	80.0	154.0	0.0	.	62	.	.	Atlas-SNP
NEDD9	4739	hgsc.bcm.edu	hg19	6	11213881	11213881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	NEDD9	NM_182966	exon2	c.C92T	p.T31I	ATGACGGTCAGGA	.	100.0	41.0	102.0	0.0	.	191	.	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	hg19	6	29079911	29079911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	OR2J3	NM_001005216	exon1	c.C244T	p.P82S	TCTATCCCTCAGT	.	148.0	66.0	132.0	0.0	.	53	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	hg19	6	30955326	30955326	+	Silent	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	MUC21,NS,malignant_melanoma,0,2	MUC21	NM_001010909	exon2	c.T1374G	p.T458T	CACAACTTCCCAT	.	149.0	65.0	136.0	0.0	.	98	.	.	Atlas-SNP
HLA-C	3107	hgsc.bcm.edu	hg19	6	31238146	31238146	+	Missense_Mutation	SNP	C	C	T	rs281860561		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HLA-C	NM_002117	exon4	c.G736A	p.E246K	GGTCCTCCCCATC	.	87.0	35.0	84.0	0.0	.	92	.	.	Atlas-SNP
C2	717	hgsc.bcm.edu	hg19	6	31903820	31903820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	C2	NM_000063	exon7	c.G970A	p.E324K	AGCCTGGAAAATG	.	117.0	38.0	103.0	0.0	.	50	.	.	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	hg19	6	31933608	31933608	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SKIV2L	NM_006929	exon18	c.C2020G	p.R674G	CCTGCTCGTACAG	.	161.0	48.0	157.0	0.0	.	97	.	.	Atlas-SNP
RGL2	5863	hgsc.bcm.edu	hg19	6	33264534	33264534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RGL2	NM_004761	exon4	c.G260A	p.R87H	GAGGAACGTGGGG	.	170.0	63.0	153.0	0.0	.	58	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38758095	38758095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	DNAH8	NM_001206927	exon20	c.G2695A	p.V899M	CTCACAGTGTTAA	.	155.0	63.0	132.0	0.0	.	1239	.	.	Atlas-SNP
MCM3	4172	hgsc.bcm.edu	hg19	6	52132768	52132768	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	MCM3	NM_001270472	exon14	c.1999-2A>T	.	AGAACCTAAGACC	.	111.0	43.0	91.0	0.0	.	63	.	.	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	hg19	6	73017046	73017046	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RIMS1	NM_014989	exon27	c.A3936G	p.Q1312Q	TAGTCAAGAACTT	.	114.0	43.0	106.0	0.0	.	278	.	.	Atlas-SNP
METTL24	728464	hgsc.bcm.edu	hg19	6	110620219	110620219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_001123364	exon4	c.A692G	p.D231G	CGCCAGTCAATGG	.	50.0	20.0	51.0	0.0	.	.	.	.	Atlas-SNP
C6orf170	221322	hgsc.bcm.edu	hg19	6	121624863	121624863	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	C6orf170	NM_152730	exon9	c.T980G	p.V327G	TGTTTAACTGTTA	.	179.0	11.0	168.0	0.0	.	146	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152671436	152671436	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	SYNE1_ENST00000265368,NS,carcinoma,0,2	SYNE1	NM_182961	exon72	c.A11768G	p.D3923G	TCATGGTCTTTGA	.	54.0	21.0	61.0	0.0	.	3227	.	.	Atlas-SNP
GPR146	115330	hgsc.bcm.edu	hg19	7	1097405	1097405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	GPR146	NM_138445	exon1	c.T254G	p.L85R	ACCTGCTCGGCCC	.	83.0	27.0	56.0	0.0	.	20	.	.	Atlas-SNP
SFRP4	6424	hgsc.bcm.edu	hg19	7	37955894	37955894	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SFRP4	NM_003014	exon1	c.G246A	p.A82A	AATGGGCGCGTAC	.	95.0	37.0	96.0	0.0	.	66	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82545938	82545938	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PCLO	NM_014510	exon7	c.T11364A	p.D3788E	TTCTTCATCAAGC	.	106.0	40.0	114.0	0.0	.	1506	.	.	Atlas-SNP
ABCB4	5244	hgsc.bcm.edu	hg19	7	87047881	87047881	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ABCB4	NM_018850	exon20	c.T2450A	p.L817H	GTGGCAAGTCTTG	.	103.0	41.0	81.0	0.0	.	177	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103185629	103185629	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RELN	NM_173054	exon42	c.A6465G	p.S2155S	TGGACCTGAGTAG	.	198.0	9.0	155.0	0.0	.	593	.	.	Atlas-SNP
KCND2	3751	hgsc.bcm.edu	hg19	7	120381672	120381672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	KCND2	NM_012281	exon3	c.A1363G	p.N455D	CTCAGTAATCAGC	.	333.0	137.0	271.0	0.0	.	194	.	.	Atlas-SNP
SND1	27044	hgsc.bcm.edu	hg19	7	127729698	127729698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SND1	NM_014390	exon22	c.G2576A	p.G859E	AGGAAGGGCTGGT	.	146.0	73.0	116.0	0.0	.	104	.	.	Atlas-SNP
NOM1	64434	hgsc.bcm.edu	hg19	7	156743034	156743034	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	NOM1	NM_138400	exon1	c.G603A	p.K201K	AAAGAAGGACGGC	.	128.0	60.0	144.0	0.0	.	73	.	.	Atlas-SNP
LOXL2	4017	hgsc.bcm.edu	hg19	8	23217767	23217767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LOXL2	NM_002318	exon3	c.T367G	p.L123V	TGTCTAACCAGAT	.	31.0	14.0	86.0	0.0	.	97	.	.	Atlas-SNP
PLAT	5327	hgsc.bcm.edu	hg19	8	42037780	42037780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PLAT	NM_000930	exon11	c.A1202G	p.D401G	TAAGTGTCATCAT	.	95.0	41.0	81.0	0.0	.	62	.	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	hg19	8	72958795	72958795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TRPA1	NM_007332	exon17	c.A2014C	p.K672Q	GTGTTTTTTTGGT	.	61.0	30.0	62.0	0.0	.	256	.	.	Atlas-SNP
KCNQ3	3786	hgsc.bcm.edu	hg19	8	133492604	133492604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	KCNQ3	NM_004519	exon1	c.C176A	p.A59D	GCTCCGGCCCCGA	.	353.0	131.0	326.0	1.0	.	164	.	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145737311	145737311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RECQL4	NM_004260	exon20	c.G3376A	p.E1126K	CTGGCTCGGGGCC	.	87.0	11.0	55.0	0.0	.	75	.	.	Atlas-SNP
CDKN2A	1029	hgsc.bcm.edu	hg19	9	21971036	21971036	+	Missense_Mutation	SNP	C	C	A	rs121913381		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	CDKN2A_ENST00000498124,bladder,carcinoma,0,3	CDKN2A	NM_058195	exon2	c.G365T	p.R122L	AGGCATCGCGCAC	.	133.0	54.0	120.0	0.0	.	4810	.	.	Atlas-SNP
AQP3	360	hgsc.bcm.edu	hg19	9	33442436	33442436	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	AQP3	NM_004925	exon5	c.G573A	p.E191E	GAAGGCCTCCAGG	.	197.0	70.0	226.0	0.0	.	18	.	.	Atlas-SNP
SLC46A2	57864	hgsc.bcm.edu	hg19	9	115652684	115652684	+	Missense_Mutation	SNP	G	G	C	rs376774946	alternate_allele	TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SLC46A2	NM_033051	exon1	c.C278G	p.A93G	CCGTAGGCGGACA	.	151.0	62.0	132.0	0.0	.	30	.	.	Atlas-SNP
EHMT1	79813	hgsc.bcm.edu	hg19	9	140671290	140671290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	EHMT1	NM_001145527	exon12	c.C2012T	p.T671M	CCACAACGGGCAG	.	118.0	9.0	127.0	0.0	.	196	.	.	Atlas-SNP
EXOC6	54536	hgsc.bcm.edu	hg19	10	94669328	94669328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	EXOC6	NM_019053	exon6	c.A603C	p.K201N	TCTCAAAGACTTT	.	237.0	91.0	235.0	0.0	.	147	.	.	Atlas-SNP
CYP2C9	1559	hgsc.bcm.edu	hg19	10	96745877	96745877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CYP2C9	NM_000771	exon8	c.C1237A	p.L413M	CACTTTCTGGATG	.	138.0	50.0	121.0	0.0	.	82	.	.	Atlas-SNP
COX15	1355	hgsc.bcm.edu	hg19	10	101476153	101476153	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	COX15	NM_078470	exon8	c.A1053G	p.R351R	GGTCCTTCTAGGA	.	86.0	29.0	90.0	0.0	.	25	.	.	Atlas-SNP
ADRA2A	150	hgsc.bcm.edu	hg19	10	112838915	112838915	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ADRA2A	NM_000681	exon1	c.C1161T	p.F387F	GCGCTTCACGTTC	.	38.0	12.0	48.0	0.0	.	38	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33565296	33565296	+	Silent	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_012194	exon1	c.T1296A	p.I432I	CACAATTAGCACC	.	81.0	28.0	88.0	0.0	.	.	.	.	Atlas-SNP
AMBRA1	55626	hgsc.bcm.edu	hg19	11	46567302	46567302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	AMBRA1	NM_001267783	exon5	c.G403T	p.D135Y	TGCTATCTGTGAA	.	133.0	54.0	105.0	0.0	.	201	.	.	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	hg19	11	55579061	55579061	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	OR5L1	NM_001004738	exon1	c.T119A	p.L40X	CGTTGTTAGCCAA	.	95.0	36.0	100.0	0.0	.	145	.	.	Atlas-SNP
VEGFB	7423	hgsc.bcm.edu	hg19	11	64005084	64005084	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	VEGFB	NM_001243733	exon6	c.C502G	p.R168G	TTCCTCCGTTGCC	.	59.0	18.0	37.0	0.0	.	18	.	.	Atlas-SNP
RPS6KB2	6199	hgsc.bcm.edu	hg19	11	67200122	67200122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RPS6KB2	NM_003952	exon6	c.C509A	p.T170K	AAGATACGGCCTG	.	135.0	46.0	91.0	0.0	.	92	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76890167	76890167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	MYO7A	NM_001127179	exon20	c.T2359C	p.Y787H	AAGAACTACGGGC	.	97.0	53.0	79.0	0.0	.	164	.	.	Atlas-SNP
INTS4	92105	hgsc.bcm.edu	hg19	11	77669833	77669833	+	Silent	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	INTS4	NM_033547	exon7	c.A756T	p.A252A	CTGGACTGCAGCA	.	702.0	402.0	436.0	0.0	.	89	.	.	Atlas-SNP
FAM181B	220382	hgsc.bcm.edu	hg19	11	82443621	82443621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	FAM181B	NM_175885	exon1	c.C1151T	p.P384L	GGCGGCGGGGGCA	.	197.0	14.0	144.0	0.0	.	14	.	.	Atlas-SNP
PCF11	51585	hgsc.bcm.edu	hg19	11	82877710	82877710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PCF11	NM_015885	exon5	c.T1771C	p.S591P	CAAAGTTCCAAGT	.	457.0	143.0	375.0	0.0	.	220	.	.	Atlas-SNP
RBM7	10179	hgsc.bcm.edu	hg19	11	114271428	114271428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RBM7	NM_016090	exon1	c.T35C	p.L12P	GCACTCTCTTTGT	.	75.0	10.0	163.0	0.0	.	33	.	.	Atlas-SNP
CD163L1	283316	hgsc.bcm.edu	hg19	12	7551140	7551140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CD163L1	NM_174941	exon7	c.C1449A	p.S483R	ACAGGGGCTATGA	.	149.0	53.0	104.0	0.0	.	238	.	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40668428	40668428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LRRK2	NM_198578	exon15	c.T1700C	p.I567T	AAGTAATTTCTTC	.	80.0	27.0	83.0	0.0	.	763	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49431855	49431855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	MLL2	NM_003482	exon34	c.G9284A	p.G3095D	TCAGGGCCCAAGG	.	81.0	33.0	94.0	0.0	.	1173	.	.	Atlas-SNP
KRT85	3891	hgsc.bcm.edu	hg19	12	52757067	52757067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	KRT85	NM_002283	exon5	c.G914T	p.R305L	CGGCTGCGGCTGG	.	85.0	7.0	79.0	0.0	.	78	.	.	Atlas-SNP
TIMELESS	8914	hgsc.bcm.edu	hg19	12	56817448	56817448	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	TIMELESS,NS,carcinoma,0,1	TIMELESS	NM_003920	exon17	c.G2010A	p.E670E	CTCCTCCTCTTCT	.	63.0	4.0	52.0	0.0	.	107	.	.	Atlas-SNP
PRIM1	5557	hgsc.bcm.edu	hg19	12	57136845	57136845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PRIM1	NM_000946	exon7	c.A674T	p.E225V	GCATATTCTTCAA	.	62.0	26.0	60.0	0.0	.	22	.	.	Atlas-SNP
PAH	5053	hgsc.bcm.edu	hg19	12	103310862	103310862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PAH	NM_000277	exon1	c.C47T	p.S16F	AAGTCAGAGAGTT	.	87.0	32.0	88.0	0.0	.	77	.	.	Atlas-SNP
ATP6V0A2	23545	hgsc.bcm.edu	hg19	12	124242532	124242532	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ATP6V0A2	NM_012463	exon20	c.T2524G	p.F842V	TTCTCATTCAGTC	.	71.0	19.0	64.0	0.0	.	68	.	.	Atlas-SNP
ATP12A	479	hgsc.bcm.edu	hg19	13	25265114	25265114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ATP12A	NM_001185085	exon8	c.C812T	p.P271L	CTTCCCCTGTAGG	.	76.0	29.0	91.0	0.0	.	172	.	.	Atlas-SNP
TM9SF2	9375	hgsc.bcm.edu	hg19	13	100206556	100206556	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TM9SF2	NM_004800	exon14	c.1489-2A>T	.	TACTGAAGGCCAT	.	76.0	25.0	70.0	0.0	.	52	.	.	Atlas-SNP
IRS2	8660	hgsc.bcm.edu	hg19	13	110434682	110434682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	IRS2	NM_003749	exon1	c.G3719A	p.R1240H	TCTCTGCGCATGG	.	136.0	55.0	137.0	0.0	.	44	.	.	Atlas-SNP
MCF2L	23263	hgsc.bcm.edu	hg19	13	113750772	113750772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	MCF2L	NM_001112732	exon28	c.G3163A	p.V1055M	GAGCTGGTGCAGG	.	189.0	91.0	194.0	0.0	.	182	.	.	Atlas-SNP
OR4Q3	441669	hgsc.bcm.edu	hg19	14	20216431	20216431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	OR4Q3	NM_172194	exon1	c.T845C	p.M282T	CACCTATGTTGAA	.	101.0	18.0	117.0	0.0	.	117	.	.	Atlas-SNP
MGA	23269	hgsc.bcm.edu	hg19	15	41988768	41988768	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	MGA	NM_001080541	exon3	c.C1560T	p.F520F	TGCCTTCTGCTTA	.	166.0	62.0	135.0	0.0	.	264	.	.	Atlas-SNP
LRRC57	255252	hgsc.bcm.edu	hg19	15	42839593	42839593	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LRRC57	NM_153260	exon4	c.C358G	p.L120V	CTCCCAGTTGGTT	.	131.0	53.0	122.0	0.0	.	20	.	.	Atlas-SNP
PRTG	283659	hgsc.bcm.edu	hg19	15	55972370	55972370	+	Silent	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PRTG	NM_173814	exon6	c.A855C	p.G285G	ACCATTTCCAAGT	.	213.0	87.0	202.0	0.0	.	110	.	.	Atlas-SNP
IGDCC4	57722	hgsc.bcm.edu	hg19	15	65693281	65693281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	IGDCC4,NS,lymphoid_neoplasm,0,2	IGDCC4	NM_020962	exon5	c.C704T	p.S235F	GCCAGGGACCCTG	.	88.0	9.0	63.0	0.0	.	95	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86124904	86124904	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	AKAP13	NM_007200	exon7	c.C3605G	p.S1202X	AGCTCTCAGCCCA	.	56.0	11.0	58.0	0.0	.	394	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	86814917	86814917	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	AGBL1	NM_152336	exon14	c.C1917T	p.G639G	GACAGGCCATGAA	.	105.0	35.0	97.0	0.0	.	151	.	.	Atlas-SNP
LONP2	83752	hgsc.bcm.edu	hg19	16	48385598	48385598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LONP2	NM_031490	exon15	c.T2444C	p.V815A	GCAACGTACGACA	.	87.0	26.0	75.0	0.0	.	63	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11650915	11650915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	DNAH9	NM_001372	exon32	c.T6442C	p.F2148L	TCTGTATTTGTGG	.	83.0	29.0	51.0	0.0	.	695	.	.	Atlas-SNP
CRLF3	51379	hgsc.bcm.edu	hg19	17	29123225	29123225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CRLF3	NM_015986	exon4	c.G556A	p.E186K	GTTCTTCTATCTG	.	121.0	10.0	105.0	0.0	.	36	.	.	Atlas-SNP
AP2B1	163	hgsc.bcm.edu	hg19	17	33968894	33968894	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	AP2B1	NM_001282	exon12	c.1438-2A>T	.	CTGTTTAGGTGCA	.	62.0	22.0	60.0	0.0	.	70	.	.	Atlas-SNP
HDAC5	10014	hgsc.bcm.edu	hg19	17	42171077	42171077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HDAC5	NM_001015053	exon4	c.C223A	p.Q75K	GTTGCTGCTCCCG	.	121.0	53.0	80.0	0.0	.	67	.	.	Atlas-SNP
HDAC5	10014	hgsc.bcm.edu	hg19	17	42171078	42171078	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HDAC5	NM_001015053	exon4	c.G222A	p.E74E	TTGCTGCTCCCGC	.	119.0	52.0	80.0	0.0	.	67	.	.	Atlas-SNP
ITGA2B	3674	hgsc.bcm.edu	hg19	17	42452979	42452979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ITGA2B	NM_000419	exon26	c.C2707A	p.L903I	CCTGAAGCCTCGA	.	100.0	40.0	99.0	0.0	.	88	.	.	Atlas-SNP
OR4D2	124538	hgsc.bcm.edu	hg19	17	56247048	56247048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	OR4D2	NM_001004707	exon1	c.A32T	p.D11V	TATCAGACTTTGT	.	111.0	45.0	141.0	0.0	.	48	.	.	Atlas-SNP
SECTM1	6398	hgsc.bcm.edu	hg19	17	80280192	80280192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SECTM1	NM_003004	exon5	c.G592A	p.A198T	GCTGGGCTCCCGC	.	80.0	34.0	90.0	0.0	.	14	.	.	Atlas-SNP
FN3KRP	79672	hgsc.bcm.edu	hg19	17	80684867	80684867	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	FN3KRP	NM_024619	exon6	c.C750T	p.G250G	AGCTGGCATGTTT	.	109.0	41.0	101.0	0.0	.	31	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21343451	21343451	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LAMA3	NM_001127717	exon8	c.C1146T	p.G382G	CCAGGGCATCTAT	.	105.0	40.0	106.0	0.0	.	397	.	.	Atlas-SNP
TTC39C	125488	hgsc.bcm.edu	hg19	18	21649143	21649143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TTC39C	NM_001135993	exon4	c.C368T	p.P123L	CCGCCCCCTCTAT	.	127.0	55.0	104.0	0.0	.	83	.	.	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23937719	23937719	+	Silent	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TAF4B	NM_005640	exon14	c.T2382A	p.I794I	AGCTATTGGACCA	.	560.0	219.0	419.0	1.0	.	71	.	.	Atlas-SNP
SAFB	6294	hgsc.bcm.edu	hg19	19	5645350	5645350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SAFB	NM_002967	exon5	c.A549G	p.I183M	ACAGATAGAGGAC	.	137.0	36.0	76.0	0.0	.	74	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8191482	8191482	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	FBN3	NM_032447	exon19	c.C2424T	p.T808T	GCCCTTGGTGCTG	.	72.0	13.0	44.0	0.0	.	300	.	.	Atlas-SNP
DOCK6	57572	hgsc.bcm.edu	hg19	19	11339658	11339658	+	Silent	SNP	G	G	A	rs201482446	bycluster;by1000genomes;alternate_allele	TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	DOCK6	NM_020812	exon23	c.C2772T	p.R924R	GGCCTCGCGTACG	.	163.0	47.0	129.0	0.0	.	104	.	G|0.998;C|0.002	Atlas-SNP
ZNF20	7568	hgsc.bcm.edu	hg19	19	12244794	12244794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ZNF20	NM_021143	exon4	c.G207A	p.M69I	CTCTCTCATAAGA	.	71.0	22.0	27.0	0.0	.	86	.	.	Atlas-SNP
MVB12A	93343	hgsc.bcm.edu	hg19	19	17534830	17534830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_138401	exon7	c.C656T	p.P219L	GGGTTCCCTTCAC	.	42.0	14.0	25.0	0.0	.	.	.	.	Atlas-SNP
LPAR2	9170	hgsc.bcm.edu	hg19	19	19737371	19737371	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	LPAR2	NM_004720	exon2	c.G723A	p.K241K	AACAGTCTTGACC	.	221.0	57.0	152.0	0.0	.	28	.	.	Atlas-SNP
ZNF14	7561	hgsc.bcm.edu	hg19	19	19823467	19823467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ZNF14	NM_021030	exon4	c.A623G	p.Y208C	TGGTAATATATAA	.	179.0	45.0	114.0	0.0	.	89	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39068789	39068789	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RYR1	NM_000540	exon99	c.T14309A	p.M4770K	GGCTCATGTCCAT	.	111.0	34.0	81.0	0.0	.	708	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40366455	40366455	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	FCGBP	NM_003890	exon30	c.G13779A	p.G4593G	GCTGTCCCCATCG	.	260.0	56.0	147.0	0.0	.	416	.	.	Atlas-SNP
HNRNPUL1	11100	hgsc.bcm.edu	hg19	19	41787180	41787180	+	Silent	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HNRNPUL1	NM_007040	exon7	c.G999T	p.A333A	CTTTGCGGTGAGT	.	203.0	46.0	87.0	0.0	.	73	.	.	Atlas-SNP
IRGC	56269	hgsc.bcm.edu	hg19	19	44223843	44223843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	IRGC	NM_019612	exon2	c.T1133G	p.F378C	TCAGCTTTGGCGC	.	113.0	29.0	69.0	0.0	.	67	.	.	Atlas-SNP
SHANK1	50944	hgsc.bcm.edu	hg19	19	51170365	51170365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SHANK1	NM_016148	exon22	c.G4852T	p.D1618Y	TGGAGTCCAGGGT	.	110.0	30.0	48.0	0.0	.	210	.	.	Atlas-SNP
KLK6	5653	hgsc.bcm.edu	hg19	19	51462563	51462563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	KLK6	NM_001012964	exon6	c.G592T	p.G198W	GACCCCCAGAATC	.	193.0	42.0	126.0	0.0	.	35	.	.	Atlas-SNP
CD33	945	hgsc.bcm.edu	hg19	19	51729149	51729149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CD33	NM_001772	exon3	c.A509G	p.E170G	CCTGTGAGCAGGG	.	97.0	19.0	52.0	0.0	.	55	.	.	Atlas-SNP
ZNF845	91664	hgsc.bcm.edu	hg19	19	53855788	53855788	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ZNF845	NM_138374	exon4	c.A1860G	p.S620S	TCGTTCATACCTT	.	136.0	61.0	89.0	0.0	.	101	.	.	Atlas-SNP
CDC42EP5	148170	hgsc.bcm.edu	hg19	19	54976410	54976410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CDC42EP5	NM_145057	exon3	c.G322T	p.D108Y	CCGCGTCCATGAC	.	28.0	8.0	25.0	0.0	.	4	.	.	Atlas-SNP
PPP6R1	22870	hgsc.bcm.edu	hg19	19	55756527	55756527	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PPP6R1	NM_014931	exon5	c.G579A	p.Q193Q	CAGCCGCTGGACG	.	128.0	23.0	60.0	0.0	.	63	.	.	Atlas-SNP
BPIFB4	149954	hgsc.bcm.edu	hg19	20	31671301	31671301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_182519	exon3	c.G298T	p.G100W	CAGCTGGGGGGCA	.	124.0	55.0	116.0	0.0	.	.	.	.	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40127986	40127986	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CHD6	NM_032221	exon6	c.A864G	p.E288E	ATCATCTTCTGGA	.	64.0	31.0	77.0	0.0	.	312	.	.	Atlas-SNP
ST13	6767	hgsc.bcm.edu	hg19	22	41252470	41252470	+	Silent	SNP	G	G	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	ST13	NM_003932	exon1	c.C75G	p.T25T	TTCCTCGGTGTGC	.	482.0	27.0	399.0	0.0	.	16	.	.	Atlas-SNP
CAPN6	827	hgsc.bcm.edu	hg19	X	110490682	110490682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CAPN6	NM_014289	exon12	c.C1657A	p.P553T	GGACAGGAGAACG	.	137.0	16.0	160.0	0.0	.	120	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	hg19	X	122551286	122551286	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	GRIA3	NM_000828	exon11	c.A1534C	p.T512P	ACTATAACATTGG	.	299.0	129.0	145.0	0.0	.	386	.	.	Atlas-SNP
LOC389895	0	hgsc.bcm.edu	hg19	X	139174143	139174143	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	.	NM_001271560	exon1	c.T242G	p.L81R	AAGGACTTTCCAT	.	16.0	8.0	3.0	0.0	.	.	.	.	Atlas-SNP
SLC17A7	57030	hgsc.bcm.edu	hg19	19	49937289	49937289	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	SLC17A7,colon,carcinoma,0,1	SLC17A7	NM_020309	exon6	c.653delC	p.A218fs	.	.	437.0	81.0	201.0	0.0	.	57	.	.	Atlas-Indel,Pindel
WAPAL	23063	hgsc.bcm.edu	hg19	10	88231999	88232010	+	In_Frame_Del	DEL	TTAAGCCACTTA	TTAAGCCACTTA	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	TTAAGCCACTTA	TTAAGCCACTTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	WAPAL,NS,carcinoma,0,1	WAPAL	NM_015045	exon7	c.1986_1997del	p.662_666del	.	.	343.0	100.0	335.0	0.0	.	81	.	.	Atlas-Indel,Pindel
PCK1	5105	hgsc.bcm.edu	hg19	20	56140179	56140191	+	Frame_Shift_Del	DEL	GCAGAACATAAAG	GCAGAACATAAAG	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	GCAGAACATAAAG	GCAGAACATAAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PCK1	NM_002591	exon9	c.1401_1413del	p.467_471del	.	.	149.0	23.0	213.0	0.0	.	95	.	.	Atlas-INDEL
CELSR2	1952	hgsc.bcm.edu	hg19	1	109793071	109793072	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CELSR2	NM_001408	exon1	c.370_371insC	p.S124fs	.	.	132.0	52.0	116.0	0.0	.	228	.	.	Atlas-Indel,Pindel
TMED1	11018	hgsc.bcm.edu	hg19	19	10943778	10943791	+	Frame_Shift_Del	DEL	CCCGCTCCAAGTTG	CCCGCTCCAAGTTG	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	CCCGCTCCAAGTTG	CCCGCTCCAAGTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TMED1	NM_006858	exon4	c.565_578del	p.189_193del	.	.	119.0	33.0	106.0	0.0	.	22	.	.	Atlas-Indel,Pindel
MRPL35	51318	hgsc.bcm.edu	hg19	2	86434440	86434440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	MRPL35,NS,carcinoma,0,1	MRPL35	NM_145644	exon3	c.367delG	p.V123X	.	.	153.0	59.0	145.0	0.0	.	23	.	.	Atlas-Indel,Pindel
RGPD2	729857	hgsc.bcm.edu	hg19	2	88095295	88095295	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RGPD2	NM_001078170	exon10	c.1347delT	p.A449fs	.	.	1040.0	71.0	927.0	0.0	.	14	.	.	Atlas-INDEL
REV3L	5980	hgsc.bcm.edu	hg19	6	111695854	111695854	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	REV3L	NM_002912	exon13	c.3705delT	p.S1235fs	.	.	76.0	30.0	61.0	0.0	.	386	.	.	Atlas-Indel,Pindel
DIP2A	23181	hgsc.bcm.edu	hg19	21	47983839	47983839	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	DIP2A	NM_015151	exon35	c.4157delT	p.L1386fs	.	.	76.0	33.0	98.0	0.0	.	332	.	.	Atlas-Indel,Pindel
TIMM50	92609	hgsc.bcm.edu	hg19	19	39971479	39971479	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TIMM50	NM_001001563	exon1	c.294delG	p.A98fs	.	.	85.0	21.0	49.0	0.0	.	37	.	.	Atlas-Indel,Pindel
KRT75	9119	hgsc.bcm.edu	hg19	12	52826861	52826861	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	KRT75	NM_004693	exon2	c.675delG	p.L225fs	.	.	116.0	51.0	129.0	0.0	.	75	.	.	Atlas-Indel,Pindel
PCF11	51585	hgsc.bcm.edu	hg19	11	82877748	82877749	+	In_Frame_Ins	INS	-	-	AAT	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PCF11	NM_015885	exon5	c.1809_1810insAAT	p.E603delinsEN	.	.	428.0	91.0	353.0	0.0	.	220	.	.	Atlas-Indel,Pindel
AHDC1	27245	hgsc.bcm.edu	hg19	1	27874319	27874361	+	Frame_Shift_Del	DEL	GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG	GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG	GTGGCCCAGGCTGGCCCCCTGGAGTCCATGCTTGAGGGGCTCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	AHDC1	NM_001029882	exon6	c.4267_4309del	p.1423_1437del	.	.	52.0	16.0	86.0	0.0	.	98	.	.	Atlas-Indel,Pindel
NTAN1	123803	hgsc.bcm.edu	hg19	16	15131989	15131990	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.,1	NTAN1	NM_173474	exon10	c.832_833insA	p.H278fs	.	.	165.0	65.0	142.0	0.0	.	21	.	.	Atlas-Indel,Pindel
DNAJA4	55466	hgsc.bcm.edu	hg19	15	78556708	78556709	+	Frame_Shift_Ins	INS	-	-	AAAGG	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	DNAJA4	NM_018602	exon1	c.53_54insAAAGG	p.P18fs	.	.	20.0	10.0	26.0	0.0	.	63	.	.	Atlas-Indel,Pindel
PCK1	5105	hgsc.bcm.edu	hg19	20	56140173	56140177	+	Frame_Shift_Del	DEL	GCGGC	GCGGC	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	GCGGC	GCGGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PCK1	NM_002591	exon9	c.1395_1399del	p.465_467del	.	.	156.0	23.0	222.0	0.0	.	95	.	.	Atlas-INDEL
CSDE1	7812	hgsc.bcm.edu	hg19	1	115262274	115262275	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	CSDE1	NM_001242891	exon19	c.2280_2281insC	p.G760fs	.	.	107.0	37.0	93.0	0.0	.	145	.	.	Atlas-Indel,Pindel
RGPD3	653489	hgsc.bcm.edu	hg19	2	107053238	107053238	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RGPD3	NM_001144013	exon10	c.1350delT	p.A450fs	.	.	1291.0	193.0	1114.0	0.0	.	316	.	.	Atlas-INDEL
HSD11B1	3290	hgsc.bcm.edu	hg19	1	209879238	209879239	+	Frame_Shift_Ins	INS	-	-	GGAGCCCATGTGGT	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	HSD11B1	NM_005525	exon2	c.171_172insGGAGCCCATGTGGT	p.M57fs	.	.	136.0	16.0	132.0	0.0	.	35	.	.	Atlas-Indel,Pindel
EPHA8	2046	hgsc.bcm.edu	hg19	1	22902805	22902806	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	EPHA8	NM_020526	exon3	c.254_255del	p.85_85del	.	.	249.0	96.0	248.0	0.0	.	221	.	.	Atlas-Indel,Pindel
DKKL1	27120	hgsc.bcm.edu	hg19	19	49868878	49868879	+	In_Frame_Ins	INS	-	-	CCTCTCCAG	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	DKKL1	NM_014419	exon3	c.296_297insCCTCTCCAG	p.T99delinsTLSS	.	.	142.0	15.0	80.0	0.0	.	23	.	.	Atlas-Indel,Pindel
TTR	7276	hgsc.bcm.edu	hg19	18	29175221	29175222	+	Splice_Site	DEL	GA	GA	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	TTR	.	.	.	.	.	.	163.0	66.0	152.0	0.0	.	21	.	.	Atlas-Indel,Pindel
RGPD4	285190	hgsc.bcm.edu	hg19	2	108475642	108475642	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RGPD4	NM_182588	exon10	c.1348delG	p.A450fs	.	.	1263.0	228.0	1028.0	0.0	.	112	.	.	Atlas-INDEL
AOAH	313	hgsc.bcm.edu	hg19	7	36570105	36570124	+	Frame_Shift_Del	DEL	AGAGTTGCTCTGCTCTCTGA	AGAGTTGCTCTGCTCTCTGA	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	AGAGTTGCTCTGCTCTCTGA	AGAGTTGCTCTGCTCTCTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	AOAH	NM_001637	exon19	c.1426_1442del	p.476_481del	.	.	82.0	14.0	93.0	0.0	.	79	.	.	Atlas-Indel,Pindel
RFC1	5981	hgsc.bcm.edu	hg19	4	39344053	39344054	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	RFC1	NM_002913	exon4	c.243_244insA	p.N81fs	.	.	116.0	12.0	110.0	0.0	.	114	.	.	Atlas-Indel,Pindel
PCK1	5105	hgsc.bcm.edu	hg19	20	56140173	56140191	+	Frame_Shift_Del	DEL	GCGGCTGCAGAACATAAAG	GCGGCTGCAGAACATAAAG	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	GCGGCTGCAGAACATAAAG	GCGGCTGCAGAACATAAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	PCK1	NM_002591	exon9	c.1395_1413del	p.465_471del	.	.	158.0	33.0	199.0	0.0	.	95	.	.	Pindel
SFXN4	119559	hgsc.bcm.edu	hg19	10	120917178	120917237	+	In_Frame_Del	DEL	ATTTGACAGATTCTAAAAATACCTACTCCTAAGAAAGTTGAAGAAGCAACGGCTCCCGCC	ATTTGACAGATTCTAAAAATACCTACTCCTAAGAAAGTTGAAGAAGCAACGGCTCCCGCC	-	novel		TCGA-G3-AAV0-01A-11D-A36X-10	TCGA-G3-AAV0-10A-01D-A370-10	ATTTGACAGATTCTAAAAATACCTACTCCTAAGAAAGTTGAAGAAGCAACGGCTCCCGCC	ATTTGACAGATTCTAAAAATACCTACTCCTAAGAAAGTTGAAGAAGCAACGGCTCCCGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cf7c19ad-4570-4952-9604-41305e544984	60d8b369-5133-44f7-9021-71ffb112a0ce	.	SFXN4	NM_213649	exon9	c.505_537del	p.169_179del	.	.	324.0	58.0	431.0	0.0	.	24	.	.	Pindel
