Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TAS1R3	83756	hgsc.bcm.edu	hg19	1	1266805	1266805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	TAS1R3	NM_152228	exon1	c.A80C	p.Q27P	TGTCACAGCAACT	.	137.0	51.0	170.0	0.0	.	39	.	.	Atlas-SNP
CTRC	11330	hgsc.bcm.edu	hg19	1	15772242	15772242	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	CTRC,NS,malignant_melanoma,0,1	CTRC	NM_007272	exon7	c.G790T	p.E264X	ATCAACGAGGTGG	.	52.0	26.0	72.0	0.0	.	28	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144867973	144867973	+	Silent	SNP	A	A	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	PDE4DIP	NM_014644	exon33	c.T5466A	p.S1822S	GTCCCCAGATACA	.	158.0	29.0	183.0	0.0	.	817	.	.	Atlas-SNP
VSIG8	391123	hgsc.bcm.edu	hg19	1	159826324	159826324	+	Silent	SNP	C	C	G	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	VSIG8	NM_001013661	exon5	c.G762C	p.V254V	GACCTTCACCTCC	.	153.0	113.0	92.0	0.0	.	24	.	.	Atlas-SNP
FLVCR1	28982	hgsc.bcm.edu	hg19	1	213031877	213031877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	FLVCR1	NM_014053	exon1	c.G83A	p.G28D	CGAGGGGCGCGCC	.	117.0	58.0	75.0	0.0	.	31	.	.	Atlas-SNP
CNST	163882	hgsc.bcm.edu	hg19	1	246811256	246811256	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CNST	NM_152609	exon9	c.T1753A	p.S585T	GAAGCATCCTATA	.	277.0	56.0	186.0	0.0	.	73	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179413257	179413257	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	TTN	NM_001267550	exon339	c.T93096C	p.S31032S	TGTAGCAGATCCC	.	135.0	50.0	113.0	0.0	.	18412	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	189.0	109.0	146.0	1.0	.	4904	.	.	Atlas-SNP
CISH	1154	hgsc.bcm.edu	hg19	3	50645253	50645253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CISH	NM_013324	exon4	c.A613G	p.K205E	CCTCCTTAGGCAT	.	113.0	41.0	86.0	0.0	.	27	.	.	Atlas-SNP
CACNA2D3	55799	hgsc.bcm.edu	hg19	3	54930804	54930804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CACNA2D3	NM_018398	exon26	c.A2275T	p.N759Y	AAGGAGAACATTT	.	142.0	38.0	113.0	0.0	.	159	.	.	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	hg19	3	97851822	97851822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	OR5H1	NM_001005338	exon1	c.T281A	p.L94H	TATCTCTCTCTGA	.	277.0	106.0	372.0	0.0	.	71	.	.	Atlas-SNP
ACAP2	23527	hgsc.bcm.edu	hg19	3	195017930	195017930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	ACAP2	NM_012287	exon16	c.A1476T	p.Q492H	TCCTGGTTGGGGT	.	46.0	14.0	66.0	0.0	.	72	.	.	Atlas-SNP
CYP2U1	113612	hgsc.bcm.edu	hg19	4	108866371	108866371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CYP2U1	NM_183075	exon2	c.A736G	p.S246G	ACTAATAGTGAGT	.	115.0	54.0	152.0	0.0	.	20	.	.	Atlas-SNP
CYP2U1	113612	hgsc.bcm.edu	hg19	4	108866384	108866384	+	Missense_Mutation	SNP	A	A	C	rs200772412		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CYP2U1	NM_183075	exon2	c.A749C	p.K250T	TCAAGAAAATGCT	.	122.0	55.0	162.0	0.0	.	20	.	.	Atlas-SNP
MCC	4163	hgsc.bcm.edu	hg19	5	112720863	112720863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	MCC	NM_001085377	exon2	c.G217T	p.V73L	CAGCCACAGACTC	.	138.0	44.0	159.0	0.0	.	234	.	.	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	hg19	5	176002561	176002561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CDHR2	NM_017675	exon10	c.C823T	p.P275S	AATGACCCTGTGA	.	75.0	35.0	103.0	0.0	.	152	.	.	Atlas-SNP
OR2B3	442184	hgsc.bcm.edu	hg19	6	29054623	29054623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	OR2B3	NM_001005226	exon1	c.A403G	p.I135V	TCATGATGACTAC	.	106.0	41.0	109.0	0.0	.	44	.	.	Atlas-SNP
STK19	8859	hgsc.bcm.edu	hg19	6	31948260	31948260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	STK19_ENST00000375333,right_upper_lobe,carcinoma,0,1	STK19	NM_032454	exon6	c.G848T	p.R283L	CCGTCCGAGATGC	.	64.0	3.0	108.0	0.0	.	33	.	.	Atlas-SNP
HS3ST5	222537	hgsc.bcm.edu	hg19	6	114378489	114378489	+	Missense_Mutation	SNP	G	G	A	rs374141405		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	HS3ST5,NS,carcinoma,0,2	HS3ST5	NM_153612	exon2	c.C973T	p.R325C	ATTTGCGCAATTT	.	99.0	41.0	136.0	0.0	.	80	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129663536	129663536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	LAMA2	NM_000426	exon30	c.G4360C	p.G1454R	GCTCTTGGATACT	.	90.0	36.0	103.0	0.0	.	481	.	.	Atlas-SNP
FAM126A	84668	hgsc.bcm.edu	hg19	7	22985753	22985753	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	FAM126A	NM_032581	exon11	c.C1021G	p.L341V	CCATCAGTTCTTC	.	76.0	4.0	84.0	0.0	.	53	.	.	Atlas-SNP
PLXNA4	91584	hgsc.bcm.edu	hg19	7	132192343	132192343	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	PLXNA4	NM_001105543	exon2	c.G1110T	p.R370R	CTGCAGCCGCTCC	.	62.0	19.0	80.0	0.0	.	873	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113331084	113331084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CSMD3	NM_198123	exon47	c.G7342T	p.A2448S	GAGGTGCTCCATC	.	61.0	12.0	44.0	0.0	.	2325	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113331118	113331118	+	Silent	SNP	C	C	A	rs371684642	alternate_allele	TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	CSMD3,rectum,carcinoma,0,1	CSMD3	NM_198123	exon47	c.G7308T	p.T2436T	TCTGCACGTCAGA	.	68.0	15.0	54.0	0.0	.	2325	.	.	Atlas-SNP
ACTL7A	10881	hgsc.bcm.edu	hg19	9	111625852	111625852	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	ACTL7A	NM_006687	exon1	c.T1250A	p.V417D	TGTGGGTCCACCG	.	101.0	40.0	127.0	0.0	.	34	.	.	Atlas-SNP
CHST3	9469	hgsc.bcm.edu	hg19	10	73767947	73767947	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CHST3	NM_004273	exon3	c.C1158T	p.Y386Y	GATGTACCGCTTC	.	117.0	48.0	168.0	0.0	.	36	.	.	Atlas-SNP
ABCC2	1244	hgsc.bcm.edu	hg19	10	101601846	101601846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	ABCC2	NM_000392	exon26	c.T3737A	p.L1246H	ATGCACTCAATGT	.	63.0	28.0	76.0	0.0	.	160	.	.	Atlas-SNP
KCNA4	3739	hgsc.bcm.edu	hg19	11	30033717	30033717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	KCNA4,NS,carcinoma,0,1	KCNA4	NM_002233	exon2	c.G509A	p.R170H	CTGTAGCGGACTG	.	66.0	26.0	67.0	1.0	.	158	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62291321	62291321	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	AHNAK	NM_001620	exon5	c.A10568T	p.E3523V	CCTCCCTCCGGAC	.	75.0	27.0	79.0	0.0	.	532	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43821122	43821122	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	ADAMTS20	NM_025003	exon27	c.A4096T	p.N1366Y	CCCAATTTCCGTA	.	105.0	26.0	122.0	0.0	.	635	.	.	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	hg19	12	116443800	116443800	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	MED13L	NM_015335	exon14	c.2345-2A>G	.	GACATCTGTAGGA	.	84.0	35.0	82.0	0.0	.	193	.	.	Atlas-SNP
METTL21C	196541	hgsc.bcm.edu	hg19	13	103346826	103346826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	METTL21C	NM_001010977	exon1	c.C23T	p.A8V	TGCTGCGCGGAGC	.	36.0	13.0	42.0	0.0	.	23	.	.	Atlas-SNP
PSMB11	122706	hgsc.bcm.edu	hg19	14	23511534	23511534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	PSMB11	NM_001099780	exon1	c.G100T	p.D34Y	GGTTGTGACCCTC	.	39.0	10.0	49.0	0.0	.	40	.	.	Atlas-SNP
NDN	4692	hgsc.bcm.edu	hg19	15	23931514	23931514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	NDN,NS,carcinoma,0,2	NDN	NM_002487	exon1	c.A851G	p.K284R	TCTTTCTTAAAGA	.	49.0	21.0	71.0	0.0	.	79	.	.	Atlas-SNP
NTN3	4917	hgsc.bcm.edu	hg19	16	2522557	2522557	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	NTN3	NM_006181	exon1	c.C855T	p.C285C	TGACTGCGGCCGC	.	71.0	31.0	83.0	0.0	.	28	.	.	Atlas-SNP
ASPHD1	253982	hgsc.bcm.edu	hg19	16	29913162	29913162	+	Silent	SNP	C	C	T	rs374797206		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	ASPHD1	NM_181718	exon1	c.C870T	p.A290A	CAATGCCGGCTTT	.	70.0	30.0	63.0	0.0	.	28	.	.	Atlas-SNP
LONP2	83752	hgsc.bcm.edu	hg19	16	48385505	48385505	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	LONP2	NM_031490	exon15	c.A2351C	p.K784T	GAATTAAAGACAA	.	50.0	21.0	74.0	0.0	.	63	.	.	Atlas-SNP
ROCK1	6093	hgsc.bcm.edu	hg19	18	18625364	18625364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	ROCK1	NM_005406	exon5	c.A479G	p.D160G	ACAAGATCTCCAC	.	55.0	20.0	61.0	0.0	.	162	.	.	Atlas-SNP
MKNK2	2872	hgsc.bcm.edu	hg19	19	2042023	2042023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	MKNK2	NM_017572	exon11	c.C761T	p.A254V	TACTCCGCCGAGC	.	70.0	18.0	61.0	0.0	.	56	.	.	Atlas-SNP
MKNK2	2872	hgsc.bcm.edu	hg19	19	2042024	2042024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	MKNK2	NM_017572	exon11	c.G760A	p.A254T	ACTCCGCCGAGCC	.	69.0	16.0	59.0	0.0	.	56	.	.	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6707900	6707900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	C3	NM_000064	exon15	c.C1886T	p.P629L	CTGCCCGGGGTGC	.	83.0	33.0	90.0	0.0	.	192	.	.	Atlas-SNP
RLN3	117579	hgsc.bcm.edu	hg19	19	14139180	14139180	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	RLN3	NM_080864	exon1	c.C164A	p.S55X	GACGATCAGACAT	.	137.0	60.0	152.0	0.0	.	10	.	.	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	hg19	19	50100111	50100111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	PRR12	NM_020719	exon4	c.C2519T	p.P840L	CGCCACCCCCGCC	.	43.0	21.0	30.0	0.0	.	157	.	.	Atlas-SNP
USP29	57663	hgsc.bcm.edu	hg19	19	57641581	57641581	+	Missense_Mutation	SNP	G	G	T	rs148182755	bycluster;by1000genomes;alternate_allele	TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	USP29	NM_020903	exon4	c.G1538T	p.R513L	TGAAACGCTATAG	.	75.0	38.0	95.0	0.0	.	186	.	G|1.000;A|0.000	Atlas-SNP
ARFGEF2	10564	hgsc.bcm.edu	hg19	20	47592685	47592685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	ARFGEF2	NM_006420	exon14	c.A1907G	p.Q636R	CTGAGCAATTTGA	.	206.0	89.0	261.0	0.0	.	160	.	.	Atlas-SNP
NDUFV3	4731	hgsc.bcm.edu	hg19	21	44324122	44324122	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	NDUFV3	NM_021075	exon3	c.C1000T	p.L334L	GGGCATCTGGAAA	.	68.0	50.0	130.0	0.0	.	23	.	.	Atlas-SNP
EP300	2033	hgsc.bcm.edu	hg19	22	41568575	41568575	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	EP300	NM_001429	exon28	c.T4525A	p.W1509R	GATTTCTGGCCCA	.	141.0	71.0	181.0	0.0	.	367	.	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	hg19	22	43976358	43976358	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	EFCAB6	NM_022785	exon25	c.C3214T	p.L1072L	AAGCCAGCTGGGA	.	96.0	34.0	96.0	0.0	.	177	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46792558	46792558	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	CELSR1	NM_014246	exon13	c.G5787A	p.P1929P	GCCCTGCGGGGAG	.	80.0	5.0	92.0	0.0	.	242	.	.	Atlas-SNP
ZMAT1	84460	hgsc.bcm.edu	hg19	X	101139682	101139682	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	ZMAT1	NM_001011657	exon7	c.G717A	p.K239K	ACAAGTCTTGGCC	.	111.0	52.0	66.0	0.0	.	143	.	.	Atlas-SNP
PPP1R10	5514	hgsc.bcm.edu	hg19	6	30573978	30573980	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	PPP1R10	NM_002714	exon9	c.676_678del	p.226_226del	.	.	46.0	13.0	39.0	0.0	.	60	.	.	Atlas-INDEL
TTN	7273	hgsc.bcm.edu	hg19	2	179523961	179523962	+	In_Frame_Ins	INS	-	-	CTT	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	TTN	NM_001267550	exon181	c.37307_37308insAAG	p.V12436delinsEV	.	.	230.0	32.0	278.0	0.0	.	18412	.	.	Atlas-INDEL
TTN	7273	hgsc.bcm.edu	hg19	2	179519701	179519702	+	In_Frame_Ins	INS	-	-	CTT	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	TTN	NM_001267550	exon190	c.38060_38061insAAG	p.V12687delinsEV	.	.	232.0	24.0	260.0	0.0	.	18412	.	.	Atlas-INDEL
DAK	26007	hgsc.bcm.edu	hg19	11	61110239	61110241	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-G3-AAV2-01A-11D-A36X-10	TCGA-G3-AAV2-10A-01D-A370-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cef171de-1b26-42a6-b2c3-6b4123a54ee4	9800974a-91e2-4674-9dfb-f809efce470b	.	DAK	NM_015533	exon10	c.787_789del	p.263_263del	.	.	86.0	30.0	109.0	0.0	.	52	.	.	Atlas-INDEL
