Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ELTD1	64123	hgsc.bcm.edu	hg19	1	79357333	79357333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	ELTD1,NS,carcinoma,0,1	ELTD1	NM_022159	exon14	c.C1886A	p.T629N	CAGGTGGTGCCGA	.	56.0	6.0	82.0	0.0	.	143	.	.	Atlas-SNP
PTPN14	5784	hgsc.bcm.edu	hg19	1	214557166	214557166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	PTPN14	NM_005401	exon13	c.G2032A	p.E678K	CCTCCTCGGGCGG	.	67.0	20.0	69.0	0.0	.	168	.	.	Atlas-SNP
CYP1B1	1545	hgsc.bcm.edu	hg19	2	38301854	38301854	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	CYP1B1	NM_000104	exon2	c.C678G	p.S226R	GTTGTGGCTGAGC	.	320.0	27.0	289.0	0.0	.	39	.	.	Atlas-SNP
XPO1	7514	hgsc.bcm.edu	hg19	2	61719221	61719221	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	XPO1	NM_003400	exon16	c.T1836G	p.D612E	AATTTCATCAATA	.	138.0	42.0	156.0	0.0	.	108	.	.	Atlas-SNP
NOTO	344022	hgsc.bcm.edu	hg19	2	73438038	73438038	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	NOTO	NM_001134462	exon3	c.A737C	p.E246A	ATGCCGAGTCAGG	.	97.0	14.0	104.0	0.0	.	20	.	.	Atlas-SNP
DCTN1	1639	hgsc.bcm.edu	hg19	2	74598683	74598683	+	Missense_Mutation	SNP	G	G	C	rs112725508		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.,1	DCTN1	NM_004082	exon8	c.C626G	p.P209R	GGAAGCGGGGGGA	.	98.0	25.0	118.0	0.0	.	110	.	G|0.500;C|0.500	Atlas-SNP
KDM3A	55818	hgsc.bcm.edu	hg19	2	86707311	86707311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	KDM3A	NM_001146688	exon16	c.C2338T	p.P780S	GAAAAACCGACTC	.	82.0	41.0	90.0	0.0	.	179	.	.	Atlas-SNP
MZT2B	80097	hgsc.bcm.edu	hg19	2	130948160	130948160	+	Silent	SNP	G	G	A	rs376967942	alternate_allele	TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	MZT2B	NM_025029	exon3	c.G438A	p.G146G	CAAGGGGGGCGGG	.	391.0	56.0	227.0	0.0	.	5	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141625315	141625315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	LRP1B	NM_018557	exon27	c.G4423T	p.V1475L	GAGACACAGCAAA	.	198.0	55.0	139.0	0.0	.	1315	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179433557	179433557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	TTN	NM_001267550	exon326	c.C77302A	p.L25768I	TAAAAAGATATTC	.	111.0	15.0	83.0	0.0	.	18412	.	.	Atlas-SNP
FZD7	8324	hgsc.bcm.edu	hg19	2	202900925	202900925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	FZD7	NM_003507	exon1	c.C1555T	p.H519Y	CCCGGCCACTTCC	.	103.0	60.0	64.0	0.0	.	70	.	.	Atlas-SNP
CCDC108	255101	hgsc.bcm.edu	hg19	2	219888857	219888857	+	Silent	SNP	A	A	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	CCDC108	NM_194302	exon15	c.T2475G	p.T825T	GCCCGAAGTGGGC	.	232.0	30.0	168.0	0.0	.	208	.	.	Atlas-SNP
ABCB6	10058	hgsc.bcm.edu	hg19	2	220079752	220079752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ABCB6	NM_005689	exon6	c.A1207G	p.I403V	AGTAGATGATGCC	.	148.0	20.0	86.0	0.0	.	76	.	.	Atlas-SNP
ATG7	10533	hgsc.bcm.edu	hg19	3	11406156	11406156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ATG7	NM_001136031	exon16	c.G1823T	p.S608I	GCAGCAGTGACGA	.	85.0	4.0	97.0	0.0	.	56	.	.	Atlas-SNP
IQSEC1	9922	hgsc.bcm.edu	hg19	3	12944273	12944273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	IQSEC1	NM_014869	exon13	c.A2847C	p.E949D	ACTTACTTCCACA	.	252.0	17.0	258.0	0.0	.	88	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	116.0	45.0	180.0	0.0	.	4904	.	.	Atlas-SNP
TMF1	7110	hgsc.bcm.edu	hg19	3	69101099	69101099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	TMF1	NM_007114	exon1	c.C139T	p.P47S	TACCCGGCTCTCC	.	70.0	4.0	77.0	0.0	.	77	.	.	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	hg19	3	183212026	183212026	+	Silent	SNP	C	C	A	rs2256061	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	KLHL6	NM_130446	exon5	c.G1191T	p.S397S	GTTGATCGAAGAA	.	91.0	18.0	129.0	0.0	.	100	.	C|0.818;T|0.182	Atlas-SNP
ATP10D	57205	hgsc.bcm.edu	hg19	4	47527592	47527592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ATP10D	NM_020453	exon5	c.G709A	p.E237K	GATCCTGAGAAGT	.	93.0	46.0	89.0	0.0	.	168	.	.	Atlas-SNP
SCD5	79966	hgsc.bcm.edu	hg19	4	83719510	83719510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	SCD5	NM_024906	exon1	c.G181A	p.V61M	AGTACACGGCCCC	.	97.0	4.0	140.0	0.0	.	58	.	.	Atlas-SNP
CWC27	10283	hgsc.bcm.edu	hg19	5	64267604	64267604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	CWC27	NM_005869	exon12	c.C1117A	p.Q373K	AGGAAGCAACAGT	.	217.0	43.0	266.0	0.0	.	47	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118485628	118485628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	DMXL1,NS,carcinoma,0,1	DMXL1	NM_005509	exon18	c.G4106A	p.R1369H	ATGAACGCCGCCT	.	80.0	16.0	81.0	0.0	.	268	.	.	Atlas-SNP
CTXN3	613212	hgsc.bcm.edu	hg19	5	126993411	126993411	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	CTXN3	NM_001048252	exon3	c.T198C	p.D66D	GGCTGATGGACTT	.	112.0	27.0	148.0	0.0	.	19	.	.	Atlas-SNP
STK32A	202374	hgsc.bcm.edu	hg19	5	146750236	146750236	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	STK32A,NS,carcinoma,0,1	STK32A	NM_001112724	exon9	c.C680G	p.S227C	TTCGCTCCAGTAC	.	74.0	21.0	107.0	0.0	.	54	.	.	Atlas-SNP
ANKRD6	22881	hgsc.bcm.edu	hg19	6	90312775	90312775	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ANKRD6	NM_001242809	exon4	c.A247C	p.T83P	CGGGCCACAGTGG	.	55.0	7.0	78.0	0.0	.	51	.	.	Atlas-SNP
PHF14	9678	hgsc.bcm.edu	hg19	7	11082380	11082380	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	PHF14	NM_014660	exon13	c.C2251G	p.H751D	CATTACCATCTTG	.	89.0	38.0	67.0	0.0	.	90	.	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	hg19	7	38429486	38429486	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	AMPH	NM_001635	exon20	c.T1899C	p.F633F	TGCCTCAAAATCA	.	60.0	29.0	69.0	0.0	.	157	.	.	Atlas-SNP
ROR2	4920	hgsc.bcm.edu	hg19	9	94487147	94487147	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ROR2	NM_004560	exon9	c.G1629A	p.V543V	CTTGGTCACCACG	.	48.0	15.0	47.0	0.0	.	167	.	.	Atlas-SNP
ACTL7B	10880	hgsc.bcm.edu	hg19	9	111617803	111617803	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ACTL7B	NM_006686	exon1	c.C408T	p.T136T	CATGGCGGTGCGG	.	86.0	14.0	74.0	0.0	.	57	.	.	Atlas-SNP
FBXW5	54461	hgsc.bcm.edu	hg19	9	139836598	139836598	+	Silent	SNP	G	G	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	FBXW5	NM_018998	exon6	c.C996G	p.A332A	GCCCTGGGCCAGC	.	72.0	23.0	54.0	0.0	.	36	.	.	Atlas-SNP
CACNA1B	774	hgsc.bcm.edu	hg19	9	140773613	140773613	+	Splice_Site	SNP	T	T	C	rs201604190		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	CACNA1B,colon,carcinoma,0,8	CACNA1B	NM_001243812	exon2	c.390+2T>C	.	GGCTGGTGAGTGC	.	49.0	0.0	54.0	0.0	.	266	.	.	Atlas-SNP
BMS1	9790	hgsc.bcm.edu	hg19	10	43312903	43312903	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	BMS1	NM_014753	exon15	c.T2541G	p.Y847X	CACATATTTTGAT	.	72.0	21.0	81.0	0.0	.	132	.	.	Atlas-SNP
ERCC6	2074	hgsc.bcm.edu	hg19	10	50681069	50681069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ERCC6	NM_000124	exon15	c.A2715G	p.X905W	TATGGATGTGTCC	.	215.0	70.0	196.0	0.0	.	162	.	.	Atlas-SNP
EGR2	1959	hgsc.bcm.edu	hg19	10	64573833	64573833	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	EGR2	NM_000399	exon2	c.C565T	p.L189L	CTGACAGGAACGC	.	157.0	14.0	144.0	0.0	.	77	.	.	Atlas-SNP
HKDC1	80201	hgsc.bcm.edu	hg19	10	71010157	71010157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	HKDC1	NM_025130	exon11	c.T1682C	p.I561T	TCGCCATCCCCCT	.	79.0	4.0	88.0	0.0	.	98	.	.	Atlas-SNP
OPN4	94233	hgsc.bcm.edu	hg19	10	88422074	88422074	+	Missense_Mutation	SNP	G	G	A	rs150092638		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	OPN4	NM_001030015	exon9	c.G1172A	p.R391H	ACAGTCGCCCCTA	.	72.0	13.0	59.0	0.0	.	61	.	G|1.000;A|0.000	Atlas-SNP
SEC31B	25956	hgsc.bcm.edu	hg19	10	102256096	102256096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	SEC31B	NM_015490	exon18	c.G2229T	p.R743S	AGTGACCCTGTAG	.	85.0	10.0	99.0	0.0	.	84	.	.	Atlas-SNP
QSER1	79832	hgsc.bcm.edu	hg19	11	32954330	32954330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	QSER1	NM_001076786	exon4	c.G1139T	p.G380V	TTTCTGGGTCATC	.	147.0	10.0	137.0	0.0	.	153	.	.	Atlas-SNP
TCP11L1	55346	hgsc.bcm.edu	hg19	11	33076187	33076187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	TCP11L1	NM_001145541	exon3	c.G212T	p.R71I	CAGCGAGAGGTGT	.	97.0	16.0	104.0	0.0	.	40	.	.	Atlas-SNP
ANO2	57101	hgsc.bcm.edu	hg19	12	5860094	5860094	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ANO2	NM_020373	exon11	c.G1086T	p.L362L	TAATCCCAGCCAG	.	241.0	11.0	164.0	0.0	.	309	.	.	Atlas-SNP
KRT6B	3854	hgsc.bcm.edu	hg19	12	52845384	52845384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	KRT6B	NM_005555	exon1	c.G479A	p.R160Q	TCGGCCCGCACCC	.	416.0	54.0	375.0	0.0	.	90	.	.	Atlas-SNP
BIVM-ERCC5	0	hgsc.bcm.edu	hg19	13	103520547	103520547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	.	NM_001204425	exon20	c.C3980A	p.T1327N	GTGTAACCGCCAT	.	300.0	50.0	276.0	0.0	.	.	.	.	Atlas-SNP
NOP9	161424	hgsc.bcm.edu	hg19	14	24769239	24769239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	.	NM_174913	exon1	c.G79A	p.G27R	GCCAAGGGGTCGG	.	171.0	93.0	106.0	0.0	.	.	.	.	Atlas-SNP
PSMA3	5684	hgsc.bcm.edu	hg19	14	58734222	58734222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	PSMA3	NM_002788	exon8	c.A574G	p.K192E	ATCGTTAAAGAAG	.	85.0	11.0	57.0	0.0	.	30	.	.	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60193689	60193689	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	RTN1	NM_021136	exon3	c.G1713T	p.G571G	TAGAGGCCCAGGG	.	188.0	22.0	181.0	0.0	.	139	.	.	Atlas-SNP
RAB8B	51762	hgsc.bcm.edu	hg19	15	63547751	63547751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	RAB8B	NM_016530	exon4	c.A292G	p.N98D	TTTGACAATATTA	.	291.0	113.0	486.0	1.0	.	23	.	.	Atlas-SNP
HMG20A	10363	hgsc.bcm.edu	hg19	15	77763375	77763375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	HMG20A	NM_018200	exon6	c.C574T	p.H192Y	AAATCTCATAGGC	.	214.0	72.0	400.0	0.0	.	48	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	hg19	16	2342161	2342161	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ABCA3	NM_001089	exon19	c.C2493T	p.T831T	CTCCATGGTGGTG	.	104.0	15.0	102.0	0.0	.	176	.	.	Atlas-SNP
ATP6V0C	527	hgsc.bcm.edu	hg19	16	2569246	2569246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ATP6V0C	NM_001198569	exon3	c.A107C	p.K36T	CAGCCAAGAGCGG	.	58.0	32.0	61.0	0.0	.	10	.	.	Atlas-SNP
CBFA2T3	863	hgsc.bcm.edu	hg19	16	88968033	88968033	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	CBFA2T3	NM_005187	exon2	c.G183T	p.A61A	CGGCATCGCTGAG	.	21.0	10.0	23.0	0.0	.	47	.	.	Atlas-SNP
DNAH2	146754	hgsc.bcm.edu	hg19	17	7682620	7682620	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	DNAH2	NM_020877	exon35	c.G5601A	p.V1867V	GTCAGTGGTGGCC	.	137.0	20.0	98.0	0.0	.	498	.	.	Atlas-SNP
GAS7	8522	hgsc.bcm.edu	hg19	17	9850209	9850209	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	GAS7	NM_001130831	exon7	c.423+2T>C	.	CTGCTTACCCAGA	.	65.0	6.0	52.0	0.0	.	113	.	.	Atlas-SNP
GAS2L2	246176	hgsc.bcm.edu	hg19	17	34072962	34072962	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	GAS2L2	NM_139285	exon6	c.C1554T	p.S518S	AGGAAAGCTCCTT	.	44.0	15.0	36.0	0.0	.	94	.	.	Atlas-SNP
TNS4	84951	hgsc.bcm.edu	hg19	17	38643429	38643429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	TNS4	NM_032865	exon4	c.C1147T	p.P383S	ACCCTGGTTCTGG	.	157.0	29.0	154.0	0.0	.	72	.	.	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	hg19	17	39465245	39465245	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	KRTAP16-1	NM_001146182	exon1	c.C261T	p.S87S	GCAGCCGCTGCTC	.	275.0	117.0	264.0	1.0	.	12	.	.	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1422373	1422373	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	DAZAP1	NM_018959	exon6	c.C441G	p.D147E	CTATGACGCCGAG	.	80.0	31.0	81.0	0.0	.	52	.	.	Atlas-SNP
UBA52	7311	hgsc.bcm.edu	hg19	19	18684552	18684552	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	UBA52	NM_001033930	exon3	c.C184T	p.Q62X	AACATCCAGAAAG	.	62.0	31.0	50.0	0.0	.	6	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22170031	22170031	+	Silent	SNP	C	C	A	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ZNF208	NM_007153	exon3	c.G213T	p.V71V	TTCTTCCACCATC	.	109.0	32.0	124.0	0.0	.	817	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23543281	23543281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ZNF91	NM_003430	exon4	c.G2500A	p.A834T	TAAAAGCTTTGCC	.	71.0	31.0	61.0	0.0	.	349	.	.	Atlas-SNP
CYP2B6	1555	hgsc.bcm.edu	hg19	19	41515201	41515201	+	Silent	SNP	C	C	T	rs35349987	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	CYP2B6	NM_000767	exon5	c.C723T	p.I241I	GGAAATCAATGCT	.	566.0	116.0	520.0	0.0	.	79	.	C|0.999;A|0.001	Atlas-SNP
FKRP	79147	hgsc.bcm.edu	hg19	19	47260089	47260089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	FKRP	NM_024301	exon4	c.C1382T	p.A461V	CGCAGGCGCCTAA	.	52.0	24.0	51.0	0.0	.	16	.	.	Atlas-SNP
ACPT	93650	hgsc.bcm.edu	hg19	19	51293729	51293729	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	ACPT,NS,carcinoma,0,1	ACPT	NM_033068	exon1	c.C58G	p.L20V	CTGCTGCTGGTGC	.	77.0	5.0	58.0	0.0	.	43	.	.	Atlas-SNP
NLRP11	204801	hgsc.bcm.edu	hg19	19	56320851	56320851	+	Silent	SNP	A	A	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	NLRP11	NM_145007	exon5	c.T1125A	p.A375A	CGCATCAGCAAGA	.	105.0	10.0	113.0	0.0	.	139	.	.	Atlas-SNP
TGM6	343641	hgsc.bcm.edu	hg19	20	2411162	2411162	+	Silent	SNP	G	G	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	TGM6	NM_198994	exon11	c.G1749C	p.L583L	GATCCTGTTGGCT	.	118.0	7.0	116.0	0.0	.	126	.	.	Atlas-SNP
ZHX3	23051	hgsc.bcm.edu	hg19	20	39832198	39832198	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ZHX3	NM_015035	exon3	c.G1359A	p.Q453Q	ACCTGGCTGCTTG	.	139.0	7.0	88.0	0.0	.	78	.	.	Atlas-SNP
IL17RA	23765	hgsc.bcm.edu	hg19	22	17590239	17590239	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	IL17RA	NM_014339	exon13	c.C2130T	p.G710G	CCCGGGCGCTGGG	.	304.0	110.0	310.0	1.0	.	62	.	.	Atlas-SNP
PFKFB1	5207	hgsc.bcm.edu	hg19	X	54978348	54978348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	PFKFB1	NM_002625	exon8	c.G836A	p.R279H	TTGCCGCGAACTG	.	82.0	40.0	68.0	0.0	.	64	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135428654	135428654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	GPR112	NM_153834	exon6	c.T2789C	p.M930T	CAGAAATGTTTAA	.	203.0	107.0	239.0	0.0	.	459	.	.	Atlas-SNP
TMEM257	9142	hgsc.bcm.edu	hg19	X	144909207	144909207	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	.	NM_004709	exon1	c.A12G	p.R4R	TTCCAGACTATTT	.	332.0	61.0	265.0	0.0	.	.	.	.	Atlas-SNP
GJB1	2705	hgsc.bcm.edu	hg19	X	70443636	70443637	+	In_Frame_Ins	INS	-	-	TCATCT	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	GJB1	NM_001097642	exon2	c.79_80insTCATCT	p.V27delinsVIF	.	.	86.0	16.0	116.0	0.0	.	21	.	.	Atlas-INDEL
NACAD	23148	hgsc.bcm.edu	hg19	7	45123003	45123003	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	NACAD	NM_001146334	exon2	c.2777delT	p.L926fs	.	.	75.0	27.0	61.0	0.0	.	44	.	.	Atlas-INDEL
PNPT1	87178	hgsc.bcm.edu	hg19	2	55871841	55871846	+	In_Frame_Del	DEL	GAACCT	GAACCT	-	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	GAACCT	GAACCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	PNPT1	NM_033109	exon23	c.1833_1838del	p.611_613del	.	.	51.0	10.0	43.0	0.0	.	68	.	.	Atlas-INDEL
APOB	338	hgsc.bcm.edu	hg19	2	21239420	21239421	+	Frame_Shift_Ins	INS	-	-	TCCGAGGTCAACATCAAAA	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	APOB	NM_000384	exon21	c.3223_3224insTTTTGATGTTGACCTCGGA	p.T1075_I1076delinsFX	.	.	145.0	10.0	165.0	0.0	.	761	.	.	Atlas-INDEL
ABCA10	10349	hgsc.bcm.edu	hg19	17	67212097	67212120	+	In_Frame_Del	DEL	CATAGGTTTCCTTATTAAAACACT	CATAGGTTTCCTTATTAAAACACT	-	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	CATAGGTTTCCTTATTAAAACACT	CATAGGTTTCCTTATTAAAACACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	ABCA10	NM_080282	exon9	c.695_718del	p.232_240del	.	.	417.0	29.0	295.0	0.0	.	209	.	.	Atlas-INDEL
NKAP	79576	hgsc.bcm.edu	hg19	X	119059265	119059267	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-G3-AAV6-01A-21D-A36X-10	TCGA-G3-AAV6-10A-01D-A370-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4543d206-bcd0-4bfc-a021-4b04cb3d5fb8	64362bb7-93d9-42fc-8259-b19ea7e0030f	.	NKAP	NM_024528	exon9	c.1165_1167del	p.389_389del	.	.	90.0	23.0	101.0	0.0	.	53	.	.	Atlas-INDEL
