Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PADI1	29943	hgsc.bcm.edu	hg19	1	17565194	17565194	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PADI1	NM_013358	exon13	c.C1542T	p.A514A	GGCAGCCCAGTTT	.	55.0	18.0	120.0	0.0	.	77	.	.	Atlas-SNP
TFAP2E	339488	hgsc.bcm.edu	hg19	1	36060160	36060160	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TFAP2E	NM_178548	exon7	c.C1212T	p.A404A	CACTGCCTTCCAG	.	44.0	10.0	73.0	0.0	.	13	.	.	Atlas-SNP
VPS72	6944	hgsc.bcm.edu	hg19	1	151158055	151158055	+	Silent	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VPS72	NM_001271087	exon3	c.G312T	p.P104P	ACCAGCCGGGGTG	.	139.0	36.0	97.0	0.0	.	31	.	.	Atlas-SNP
SPRR1B	6699	hgsc.bcm.edu	hg19	1	153004986	153004986	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SPRR1B	NM_003125	exon2	c.G165A	p.E55E	GCCCGAGCCCTGC	.	66.0	9.0	86.0	0.0	.	18	.	.	Atlas-SNP
TPO	7173	hgsc.bcm.edu	hg19	2	1499804	1499804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	TPO,NS,carcinoma,0,1	TPO	NM_001206744	exon12	c.C2050T	p.R684C	CAGAGGCGTGAGC	.	36.0	12.0	32.0	0.0	.	224	.	.	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	hg19	2	25965885	25965885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ASXL2	NM_018263	exon12	c.G3321T	p.M1107I	ACCCAGCATGAAC	.	57.0	13.0	35.0	0.0	.	217	.	.	Atlas-SNP
NFU1	27247	hgsc.bcm.edu	hg19	2	69650764	69650764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NFU1	NM_001002755	exon3	c.G252T	p.R84S	CATGGTCCTTGTC	.	90.0	25.0	98.0	0.0	.	19	.	.	Atlas-SNP
CYP26B1	56603	hgsc.bcm.edu	hg19	2	72374800	72374800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CYP26B1	NM_019885	exon1	c.G164T	p.G55V	GGGAAGCCCATGG	.	49.0	11.0	63.0	0.0	.	73	.	.	Atlas-SNP
SCN2A	6326	hgsc.bcm.edu	hg19	2	166229735	166229735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SCN2A	NM_001040143	exon20	c.G3850C	p.V1284L	GTATAGGTCTCAC	.	96.0	21.0	102.0	0.0	.	589	.	.	Atlas-SNP
PPIG	9360	hgsc.bcm.edu	hg19	2	170460700	170460700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PPIG	NM_004792	exon4	c.G65T	p.G22V	CAGCTGGAAGAGT	.	70.0	26.0	89.0	0.0	.	100	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179439946	179439946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TTN	NM_001267550	exon326	c.T70913G	p.I23638S	TGATAGATGCCAC	.	53.0	15.0	77.0	0.0	.	18412	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185800549	185800549	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF804A	NM_194250	exon4	c.T426C	p.V142V	AACTGTTACTGTG	.	66.0	19.0	70.0	0.0	.	322	.	.	Atlas-SNP
COL5A2	1290	hgsc.bcm.edu	hg19	2	189907465	189907465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	COL5A2	NM_000393	exon49	c.C3506G	p.P1169R	GGTCCAGGGATTC	.	42.0	17.0	46.0	0.0	.	230	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	CTNNB1,colon,carcinoma,-1,11	CTNNB1	NM_001098209	exon7	c.A1004C	p.K335T	ACGAAAAACTACT	.	111.0	24.0	94.0	0.0	.	4904	.	.	Atlas-SNP
HIGD1A	25994	hgsc.bcm.edu	hg19	3	42826810	42826810	+	Missense_Mutation	SNP	T	T	C	rs368330989		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HIGD1A	NM_001099668	exon4	c.A277G	p.M93V	AGCCCATACCTAA	.	538.0	108.0	648.0	0.0	.	12	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47162395	47162395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SETD2	NM_014159	exon3	c.C3731T	p.P1244L	ACATGTGGTATCT	.	71.0	7.0	79.0	0.0	.	721	.	.	Atlas-SNP
KIAA0232	9778	hgsc.bcm.edu	hg19	4	6863165	6863165	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KIAA0232	NM_014743	exon7	c.C1056T	p.S352S	TAGTAGCAGTAGC	.	86.0	21.0	107.0	0.0	.	102	.	.	Atlas-SNP
BMPR1B	658	hgsc.bcm.edu	hg19	4	96052422	96052422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	BMPR1B	NM_001256793	exon8	c.A925G	p.T309A	CTAATCACAGACT	.	132.0	33.0	162.0	0.0	.	121	.	.	Atlas-SNP
EIF4E	1977	hgsc.bcm.edu	hg19	4	99850252	99850252	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EIF4E	NM_001130679	exon1	c.C12T	p.V4V	CGGTTCGACAGTC	.	46.0	12.0	54.0	0.0	.	18	.	.	Atlas-SNP
C4orf17	84103	hgsc.bcm.edu	hg19	4	100463066	100463066	+	Splice_Site	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	C4orf17	NM_032149	exon9	c.881-1G>C	.	ATTTCAGAGGCTG	.	176.0	10.0	232.0	0.0	.	42	.	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	hg19	4	134071449	134071449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	PCDH10,NS,carcinoma,0,1	PCDH10	NM_032961	exon1	c.G154A	p.G52R	GCTCGCGGGTTTC	.	79.0	19.0	94.0	0.0	.	290	.	.	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	hg19	5	123979216	123979216	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF608	NM_020747	exon6	c.C4284T	p.S1428S	AGACTTGCTGCGG	.	110.0	27.0	119.0	0.0	.	117	.	.	Atlas-SNP
GRPEL2	134266	hgsc.bcm.edu	hg19	5	148725167	148725167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GRPEL2	NM_152407	exon1	c.C65G	p.A22G	GTGCCGCGTGGGA	.	91.0	18.0	133.0	0.0	.	18	.	.	Atlas-SNP
CPLX2	10814	hgsc.bcm.edu	hg19	5	175306952	175306952	+	Silent	SNP	G	G	T	rs150632571	bycluster;by1000genomes;alternate_allele	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CPLX2	NM_006650	exon5	c.G309T	p.A103A	CCCTGCGGGCTGC	.	119.0	5.0	155.0	0.0	.	42	.	G|1.000;A|0.000	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32037937	32037937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	TNXB_ENST00000375247,NS,carcinoma,0,2	TNXB	NM_019105	exon14	c.C5245A	p.R1749S	CATGGCGCTTCTT	.	30.0	3.0	46.0	0.0	.	553	.	.	Atlas-SNP
CAPN11	11131	hgsc.bcm.edu	hg19	6	44147887	44147887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CAPN11	NM_007058	exon14	c.C1627A	p.H543N	GAGAAGCACAGCG	.	31.0	8.0	37.0	0.0	.	66	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65149117	65149117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EYS	NM_001142800	exon27	c.C5773A	p.Q1925K	AGTCTTGCTTGAC	.	90.0	16.0	146.0	0.0	.	527	.	.	Atlas-SNP
KCNQ5	56479	hgsc.bcm.edu	hg19	6	73843259	73843259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	KCNQ5,bladder,carcinoma,0,1	KCNQ5	NM_001160133	exon11	c.G1420A	p.E474K	ACAGCCGAGGGCA	.	48.0	12.0	92.0	0.0	.	153	.	.	Atlas-SNP
CEP85L	387119	hgsc.bcm.edu	hg19	6	118887408	118887408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CEP85L	NM_001178035	exon4	c.G313T	p.V105L	GCATCACATGGGC	.	46.0	13.0	61.0	0.0	.	26	.	.	Atlas-SNP
PNLDC1	154197	hgsc.bcm.edu	hg19	6	160237044	160237044	+	Missense_Mutation	SNP	G	G	T	rs137878641	bycluster;byfrequency;alternate_allele	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PNLDC1	NM_173516	exon13	c.G1006T	p.A336S	GTTCACGCGAGCA	.	41.0	11.0	47.0	0.0	.	66	.	G|0.999;A|0.001	Atlas-SNP
NPTX2	4885	hgsc.bcm.edu	hg19	7	98257930	98257930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NPTX2	NM_002523	exon5	c.C1285T	p.L429F	CGTCTCCTTGACT	.	50.0	12.0	64.0	0.0	.	45	.	.	Atlas-SNP
WNT2	7472	hgsc.bcm.edu	hg19	7	116960721	116960721	+	Silent	SNP	G	G	A	rs139486726		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	WNT2	NM_003391	exon2	c.C210T	p.A70A	CCACTCGGCCACG	.	50.0	13.0	36.0	0.0	.	56	.	G|1.000;A|0.000	Atlas-SNP
TSTA3	7264	hgsc.bcm.edu	hg19	8	144695934	144695934	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TSTA3	NM_003313	exon8	c.C717T	p.P239P	GATGATGGGCTCC	.	122.0	43.0	70.0	0.0	.	23	.	.	Atlas-SNP
NOL6	65083	hgsc.bcm.edu	hg19	9	33465828	33465828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NOL6	NM_022917	exon19	c.G2432A	p.S811N	TCTGGGCTCTGCA	.	41.0	12.0	45.0	0.0	.	85	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79320343	79320343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRUNE2	NM_015225	exon8	c.G6847A	p.D2283N	AAGCATCAGGAAC	.	90.0	16.0	93.0	0.0	.	331	.	.	Atlas-SNP
LAMC3	10319	hgsc.bcm.edu	hg19	9	133942439	133942439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	LAMC3,NS,carcinoma,0,1	LAMC3	NM_006059	exon14	c.G2440A	p.G814R	TGTAGCGGGAACG	.	26.0	10.0	42.0	0.0	.	167	.	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	hg19	9	139405212	139405212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NOTCH1	NM_017617	exon17	c.G2633A	p.C878Y	TGCCGGCACGGGC	.	38.0	17.0	73.0	0.0	.	1980	.	.	Atlas-SNP
PRKCQ	5588	hgsc.bcm.edu	hg19	10	6498670	6498670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRKCQ	NM_006257	exon15	c.C1613A	p.T538N	CAGAAGGTATTCG	.	72.0	16.0	50.0	0.0	.	113	.	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24508649	24508649	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KIAA1217	NM_019590	exon2	c.A165G	p.S55S	TGGTTCAGTTTCC	.	66.0	22.0	80.0	0.0	.	235	.	.	Atlas-SNP
MAT1A	4143	hgsc.bcm.edu	hg19	10	82036284	82036284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MAT1A	NM_000429	exon6	c.T616G	p.S206A	GCACAGAGATGAC	.	16.0	8.0	19.0	0.0	.	52	.	.	Atlas-SNP
ENTPD1	953	hgsc.bcm.edu	hg19	10	97624496	97624496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ENTPD1	NM_001164178	exon9	c.G1240T	p.A414S	TCTTACGCTGGAG	.	63.0	4.0	66.0	0.0	.	44	.	.	Atlas-SNP
OR51I1	390063	hgsc.bcm.edu	hg19	11	5462429	5462429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	OR51I1	NM_001005288	exon1	c.A316G	p.I106V	TGTGGATGAAGAA	.	70.0	20.0	75.0	0.0	.	66	.	.	Atlas-SNP
EIF4G2	1982	hgsc.bcm.edu	hg19	11	10824602	10824602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EIF4G2	NM_001172705	exon11	c.A971G	p.N324S	ATTTGATTGATCG	.	54.0	15.0	58.0	0.0	.	89	.	.	Atlas-SNP
PSMA1	5682	hgsc.bcm.edu	hg19	11	14535383	14535383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PSMA1	NM_148976	exon7	c.C412G	p.L138V	TAAGGAGACCAAC	.	61.0	17.0	82.0	0.0	.	22	.	.	Atlas-SNP
LDHAL6A	160287	hgsc.bcm.edu	hg19	11	18499168	18499168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LDHAL6A	NM_144972	exon6	c.G712T	p.G238C	TACAGTGGCTATG	.	75.0	16.0	105.0	0.0	.	35	.	.	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	hg19	11	21592455	21592455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NELL1	NM_006157	exon18	c.G2126T	p.W709L	ACAATTGGACCCA	.	69.0	12.0	82.0	0.0	.	179	.	.	Atlas-SNP
IL18BP	10068	hgsc.bcm.edu	hg19	11	71711533	71711533	+	Silent	SNP	C	C	T	rs369922984		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	IL18BP	NM_001145057	exon3	c.C165T	p.P55P	CCAGCCCCCAGTG	.	20.0	6.0	26.0	0.0	.	15	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73824849	73824849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	C2CD3	NM_015531	exon11	c.G1819T	p.A607S	TGGAGGCGAGTCG	.	51.0	5.0	47.0	0.0	.	288	.	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	hg19	12	20766493	20766493	+	Silent	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	PDE3A,NS,carcinoma,0,1	PDE3A	NM_000921	exon3	c.C1128A	p.A376A	GAGAGCCGTGAGC	.	71.0	22.0	73.0	0.0	.	184	.	.	Atlas-SNP
KRT81	3887	hgsc.bcm.edu	hg19	12	52681386	52681386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KRT81	NM_002281	exon6	c.G1020T	p.K340N	CTGGCACTTGGCA	.	50.0	18.0	57.0	0.0	.	46	.	.	Atlas-SNP
NCKAP1L	3071	hgsc.bcm.edu	hg19	12	54910687	54910687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NCKAP1L	NM_005337	exon11	c.T1006C	p.F336L	GGCCAGTTTCATT	.	78.0	19.0	97.0	0.0	.	180	.	.	Atlas-SNP
POSTN	10631	hgsc.bcm.edu	hg19	13	38162065	38162065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	POSTN	NM_006475	exon5	c.G500A	p.S167N	ATGTGACTATGTA	.	317.0	102.0	356.0	0.0	.	161	.	.	Atlas-SNP
COQ6	51004	hgsc.bcm.edu	hg19	14	74428466	74428466	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	COQ6	NM_182476	exon11	c.G1237T	p.E413X	GGTTATGAAACAG	.	40.0	13.0	52.0	0.0	.	27	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28419597	28419597	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HERC2	NM_004667	exon65	c.T10001G	p.V3334G	TCGTGGACAGAGG	.	211.0	67.0	211.0	0.0	.	501	.	.	Atlas-SNP
ARHGAP11B	89839	hgsc.bcm.edu	hg19	15	30926529	30926529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ARHGAP11B	NM_001039841	exon4	c.A454G	p.K152E	GAGGAAAAGAATA	.	431.0	113.0	461.0	0.0	.	14	.	.	Atlas-SNP
CTDSPL2	51496	hgsc.bcm.edu	hg19	15	44816346	44816346	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CTDSPL2	NM_016396	exon13	c.T1375C	p.L459L	TTTCGCTTGCATG	.	49.0	24.0	46.0	0.0	.	31	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62226473	62226473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VPS13C	NM_020821	exon49	c.T5813G	p.F1938C	AAGTCAAATTGGA	.	236.0	10.0	280.0	0.0	.	506	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	63031555	63031555	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TLN2	NM_015059	exon28	c.A3696G	p.P1232P	ACCTCCAAGCACG	.	37.0	7.0	37.0	0.0	.	253	.	.	Atlas-SNP
AEN	64782	hgsc.bcm.edu	hg19	15	89169543	89169543	+	Nonsense_Mutation	SNP	C	C	T	rs199532354		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	AEN	NM_022767	exon2	c.C103T	p.R35X	AGGAGCCGACAGC	.	23.0	5.0	15.0	0.0	.	29	.	C|0.998;T|0.002	Atlas-SNP
SEZ6L2	26470	hgsc.bcm.edu	hg19	16	29891311	29891311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SEZ6L2	NM_001243332	exon9	c.C1447T	p.P483S	CCCCTGGGCGATA	.	50.0	14.0	61.0	0.0	.	137	.	.	Atlas-SNP
GAN	8139	hgsc.bcm.edu	hg19	16	81390417	81390417	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GAN	NM_022041	exon4	c.C661T	p.L221L	TCAGCTCTGTGGG	.	149.0	46.0	132.0	0.0	.	59	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88494198	88494198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF469	NM_001127464	exon1	c.G320T	p.R107M	CCTCAAGGCTGGC	.	36.0	9.0	41.0	0.0	.	121	.	.	Atlas-SNP
SLC47A1	55244	hgsc.bcm.edu	hg19	17	19459199	19459199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SLC47A1	NM_018242	exon9	c.A830G	p.Y277C	GGGCCTATGAGGT	.	22.0	7.0	25.0	0.0	.	55	.	.	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	hg19	17	42964016	42964016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EFTUD2	NM_004247	exon3	c.G208A	p.E70K	CCTCCTCGGCTGT	.	50.0	12.0	58.0	0.0	.	85	.	.	Atlas-SNP
INTS2	57508	hgsc.bcm.edu	hg19	17	59947136	59947136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	INTS2	NM_020748	exon21	c.A3016G	p.I1006V	CTGCAATGTACAT	.	70.0	22.0	71.0	0.0	.	89	.	.	Atlas-SNP
AFG3L2	10939	hgsc.bcm.edu	hg19	18	12356735	12356735	+	Silent	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	AFG3L2	NM_006796	exon9	c.A1122C	p.G374G	CTCAGATCCACTA	.	51.0	11.0	58.0	0.0	.	60	.	.	Atlas-SNP
ZCCHC2	54877	hgsc.bcm.edu	hg19	18	60241963	60241963	+	Silent	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZCCHC2	NM_017742	exon13	c.T2649G	p.P883P	GGTGCCTCAAATT	.	102.0	25.0	114.0	0.0	.	64	.	.	Atlas-SNP
LRRC8E	80131	hgsc.bcm.edu	hg19	19	7960521	7960521	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LRRC8E	NM_001268284	exon3	c.G33A	p.T11T	GTTCACGGAACAG	.	56.0	21.0	109.0	0.0	.	67	.	.	Atlas-SNP
MAN2B1	4125	hgsc.bcm.edu	hg19	19	12757461	12757461	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MAN2B1	NM_000528	exon24	c.A3009G	p.S1003S	TTGAACTGAGGCC	.	62.0	13.0	72.0	0.0	.	91	.	.	Atlas-SNP
GLTSCR1	29998	hgsc.bcm.edu	hg19	19	48205339	48205339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GLTSCR1	NM_015711	exon15	c.G4350T	p.E1450D	GCCAGAGCCCGCA	.	12.0	9.0	4.0	0.0	.	79	.	.	Atlas-SNP
SIGLEC9	27180	hgsc.bcm.edu	hg19	19	51630358	51630358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SIGLEC9	NM_001198558	exon4	c.G820A	p.V274I	TGTGCAGTTGATG	.	40.0	8.0	52.0	0.0	.	85	.	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	hg19	20	9449315	9449315	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	PLCB4,mucosal,malignant_melanoma,0,2	PLCB4	NM_001172646	exon35	c.G3346T	p.E1116X	GAACGGGAAAGGT	.	49.0	18.0	57.0	0.0	.	204	.	.	Atlas-SNP
CD93	22918	hgsc.bcm.edu	hg19	20	23066708	23066708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CD93	NM_012072	exon1	c.C122A	p.S41X	TTGCCCGAGTGGG	.	13.0	4.0	33.0	0.0	.	84	.	.	Atlas-SNP
BPIFB4	149954	hgsc.bcm.edu	hg19	20	31672781	31672781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_182519	exon4	c.G761A	p.R254H	ACACCCGTGTGGC	.	33.0	12.0	32.0	0.0	.	.	.	.	Atlas-SNP
ADAMTS5	11096	hgsc.bcm.edu	hg19	21	28296456	28296456	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ADAMTS5	NM_007038	exon8	c.G2709A	p.Q903Q	TCCATCCTGGCAC	.	43.0	15.0	56.0	0.0	.	184	.	.	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	hg19	21	40619671	40619671	+	Missense_Mutation	SNP	G	G	T	rs201010892	alternate_allele	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	BRWD1	NM_018963	exon21	c.C2437A	p.R813S	ACTCACGCCAGCT	.	89.0	4.0	88.0	0.0	.	325	.	G|0.999;A|0.001	Atlas-SNP
EWSR1	2130	hgsc.bcm.edu	hg19	22	29664336	29664336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EWSR1	NM_013986	exon1	c.C11G	p.T4R	CGTCCACGGGTGA	.	43.0	11.0	56.0	0.0	.	104	.	.	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	hg19	22	45960824	45960824	+	Missense_Mutation	SNP	G	G	T	rs373139240		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	FBLN1	NM_006485	exon15	c.G1758T	p.R586S	CTGCAGGGTTCTT	.	41.0	15.0	55.0	0.0	.	143	.	.	Atlas-SNP
C22orf26	55267	hgsc.bcm.edu	hg19	22	46449729	46449729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	C22orf26	NM_018280	exon1	c.C245A	p.P82Q	AAACGCGGAGCAC	.	15.0	5.0	12.0	0.0	.	1	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3248697	3248697	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MXRA5	NM_015419	exon3	c.C306T	p.L102L	AGAGCTGAGGTCT	.	35.0	17.0	55.0	0.0	.	815	.	.	Atlas-SNP
VSIG4	11326	hgsc.bcm.edu	hg19	X	65253415	65253415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VSIG4	NM_001100431	exon2	c.A313G	p.M105V	CATCCATCTCCAG	.	62.0	27.0	52.0	0.0	.	54	.	.	Atlas-SNP
GABRQ	55879	hgsc.bcm.edu	hg19	X	151821124	151821124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GABRQ	NM_018558	exon9	c.G1279C	p.A427P	CAGCTGGCCACCT	.	84.0	44.0	64.0	0.0	.	131	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74283386	74283387	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ALB	NM_000477	exon11	c.1427_1428del	p.476_476del	.	.	68.0	23.0	111.0	0.0	.	132	.	.	Atlas-Indel,Pindel
PRMT10	90826	hgsc.bcm.edu	hg19	4	148579096	148579097	+	Frame_Shift_Ins	INS	-	-	AGGCTTTTTAGTTGCA	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRMT10	NM_138364	exon8	c.1177_1178insTGCAACTAAAAAGCCT	p.D393_K394delinsCNX	.	.	119.0	20.0	102.0	0.0	.	68	.	.	Atlas-Indel,Pindel
CBLB	868	hgsc.bcm.edu	hg19	3	105586253	105586253	+	Splice_Site	DEL	C	C	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CBLB	NM_170662	exon3	c.168+2G>-	.	.	.	56.0	19.0	67.0	0.0	.	118	.	.	Atlas-Indel,Pindel
NEFH	4744	hgsc.bcm.edu	hg19	22	29885589	29885590	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.,4	NEFH	NM_021076	exon4	c.1960_1961insCCCCTGAGAAGGCCAAGT	p.S654delinsSPEKAKS	.	.	182.0	98.0	192.0	0.0	.	178	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74285295	74285296	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ALB	NM_000477	exon13	c.1724_1725insC	p.F575fs	.	.	62.0	18.0	51.0	0.0	.	132	.	.	Atlas-Indel,Pindel
PCDHA7	56141	hgsc.bcm.edu	hg19	5	140214367	140214367	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	PCDHA7_ENST00000525929,lower_third,carcinoma,0,2	PCDHA7	NM_018910	exon1	c.398delT	p.F133fs	.	.	322.0	94.0	399.0	0.0	.	367	.	.	Atlas-INDEL
ZNF230	7773	hgsc.bcm.edu	hg19	19	44515439	44515440	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	ZNF230,colon,carcinoma,0,1	ZNF230	NM_006300	exon5	c.1248_1249insA	p.R416fs	.	.	113.0	24.0	120.0	0.0	.	44	.	.	Atlas-Indel,Pindel
NSRP1	84081	hgsc.bcm.edu	hg19	17	28506153	28506156	+	Frame_Shift_Del	DEL	AAGG	AAGG	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	AAGG	AAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NSRP1	NM_032141	exon5	c.345_348del	p.115_116del	.	.	253.0	58.0	290.0	0.0	.	49	.	.	Atlas-Indel,Pindel
