Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RUNX3	864	hgsc.bcm.edu	hg19	1	25229111	25229111	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RUNX3	NM_001031680	exon6	c.C792T	p.R264R	GAAGGAGCGGTCA	.	105.0	17.0	141.0	0.0	.	72	.	.	Atlas-SNP
RNF11	26994	hgsc.bcm.edu	hg19	1	51736890	51736890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RNF11	NM_014372	exon3	c.T361C	p.Y121H	CACATCTATCACC	.	61.0	6.0	51.0	0.0	.	10	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179614477	179614477	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TTN	NM_133379	exon46	c.A12650T	p.Y4217F	TTAATATATAATT	.	145.0	8.0	134.0	0.0	.	18412	.	.	Atlas-SNP
RHBDD1	84236	hgsc.bcm.edu	hg19	2	227729638	227729638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	RHBDD1,arm,malignant_melanoma,0,1	RHBDD1	NM_001167608	exon4	c.G229A	p.D77N	CATGCTGATGATT	.	98.0	9.0	131.0	0.0	.	34	.	.	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	hg19	2	234299114	234299114	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DGKD	NM_152879	exon3	c.C333A	p.V111V	AAACGTCAACAAC	.	85.0	7.0	91.0	0.0	.	106	.	.	Atlas-SNP
CHCHD4	131474	hgsc.bcm.edu	hg19	3	14158003	14158003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CHCHD4	NM_144636	exon3	c.T83C	p.V28A	TTGGTTACAAATA	.	75.0	17.0	107.0	0.0	.	8	.	.	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	46008641	46008641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	FYCO1	NM_024513	exon8	c.G2185T	p.E729X	TAAGCTCTCTGTG	.	48.0	4.0	51.0	0.0	.	115	.	.	Atlas-SNP
LRIG1	26018	hgsc.bcm.edu	hg19	3	66431944	66431944	+	Missense_Mutation	SNP	G	G	A	rs201954431	bycluster	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LRIG1	NM_015541	exon17	c.C2729T	p.A910V	TCCATCGCTTTCC	.	91.0	4.0	94.0	0.0	.	138	.	.	Atlas-SNP
CCDC50	152137	hgsc.bcm.edu	hg19	3	191107379	191107379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CCDC50	NM_178335	exon11	c.T1417G	p.S473A	TCAGAGTCCTCTC	.	173.0	12.0	152.0	0.0	.	39	.	.	Atlas-SNP
GLRA3	8001	hgsc.bcm.edu	hg19	4	175564944	175564944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GLRA3	NM_006529	exon10	c.A1388C	p.Q463P	TAATCTTGCTGCT	.	101.0	13.0	77.0	0.0	.	76	.	.	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	hg19	5	13776635	13776635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	DNAH5,caecum,carcinoma,+1,1	DNAH5	NM_001369	exon55	c.C9286T	p.R3096X	TGTTTCGAAATTT	.	244.0	25.0	231.0	0.0	.	868	.	.	Atlas-SNP
ZNF366	167465	hgsc.bcm.edu	hg19	5	71756473	71756473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	ZNF366,colon,carcinoma,0,2	ZNF366	NM_152625	exon2	c.C851T	p.T284M	CAGTGCGTGCACG	.	59.0	7.0	57.0	0.0	.	108	.	.	Atlas-SNP
IQGAP2	10788	hgsc.bcm.edu	hg19	5	75906955	75906955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	IQGAP2	NM_006633	exon13	c.C1468T	p.H490Y	CCAGCCCATGCCC	.	74.0	10.0	108.0	0.0	.	186	.	.	Atlas-SNP
ADRB2	154	hgsc.bcm.edu	hg19	5	148206993	148206993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ADRB2	NM_000024	exon1	c.C599T	p.A200V	CCTATGCCATTGC	.	55.0	13.0	59.0	0.0	.	42	.	.	Atlas-SNP
HIST1H3C	8352	hgsc.bcm.edu	hg19	6	26045686	26045686	+	Silent	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	HIST1H3C	NM_003531	exon1	c.T48A	p.A16A	CAAAGCTCCGCGC	.	122.0	13.0	113.0	0.0	.	34	.	.	Atlas-SNP
ZNF311	282890	hgsc.bcm.edu	hg19	6	28963560	28963560	+	Silent	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF311	NM_001010877	exon7	c.A1219C	p.R407R	GGATTCTTATGTG	.	286.0	15.0	197.0	0.0	.	59	.	.	Atlas-SNP
GSTA2	2939	hgsc.bcm.edu	hg19	6	52617735	52617735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GSTA2	NM_000846	exon5	c.T331G	p.F111V	GACTAAAGGGCAG	.	88.0	8.0	94.0	0.0	.	33	.	.	Atlas-SNP
TAAR2	9287	hgsc.bcm.edu	hg19	6	132938785	132938785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	TAAR2,face,carcinoma,0,1	TAAR2	NM_001033080	exon2	c.G560T	p.G187V	TCTATTCCATCTG	.	96.0	12.0	123.0	0.0	.	45	.	.	Atlas-SNP
ZC3H12D	340152	hgsc.bcm.edu	hg19	6	149771968	149771968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZC3H12D	NM_207360	exon6	c.G1435A	p.A479T	CCCGGGCGCGCGC	.	27.0	8.0	22.0	0.0	.	21	.	.	Atlas-SNP
ZBTB2	57621	hgsc.bcm.edu	hg19	6	151687673	151687673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZBTB2	NM_020861	exon3	c.G528T	p.Q176H	GGAGAGCTGTGAG	.	77.0	15.0	89.0	0.0	.	30	.	.	Atlas-SNP
PEG10	23089	hgsc.bcm.edu	hg19	7	94292809	94292809	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PEG10	NM_001172438	exon2	c.A169C	p.N57H	CCCCCCAACAACA	.	97.0	5.0	94.0	0.0	.	36	.	.	Atlas-SNP
PEG10	23089	hgsc.bcm.edu	hg19	7	94292810	94292810	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PEG10	NM_001172438	exon2	c.A170C	p.N57T	CCCCCAACAACAA	.	99.0	4.0	94.0	0.0	.	36	.	.	Atlas-SNP
LHFPL3	375612	hgsc.bcm.edu	hg19	7	103969491	103969491	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LHFPL3	NM_199000	exon1	c.G264T	p.L88L	GGAGCTGACCTGC	.	65.0	13.0	62.0	0.0	.	24	.	.	Atlas-SNP
PENK	5179	hgsc.bcm.edu	hg19	8	57354357	57354357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PENK	NM_001135690	exon4	c.G278A	p.S93N	AAATGGCTTTCTT	.	81.0	10.0	91.0	0.0	.	59	.	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	hg19	8	72975749	72975749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	TRPA1,NS,carcinoma,0,1	TRPA1	NM_007332	exon5	c.C610A	p.Q204K	CAGCTTGGTGAAT	.	85.0	7.0	58.0	0.0	.	256	.	.	Atlas-SNP
PMP2	5375	hgsc.bcm.edu	hg19	8	82357195	82357195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PMP2	NM_002677	exon2	c.A103G	p.N35D	CCAAATTTCCCAG	.	104.0	22.0	82.0	0.0	.	21	.	.	Atlas-SNP
CBWD1	55871	hgsc.bcm.edu	hg19	9	154795	154795	+	Silent	SNP	T	T	C	rs76344156		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CBWD1	NM_001145356	exon8	c.A576G	p.R192R	AACTTGTCTAAAA	.	5.0	5.0	0.0	0.0	.	24	.	.	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135781136	135781136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TSC1	NM_000368	exon15	c.T1829C	p.V610A	AATGCCACCTCAA	.	150.0	10.0	141.0	0.0	.	167	.	.	Atlas-SNP
ZNF33A	7581	hgsc.bcm.edu	hg19	10	38343571	38343571	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF33A	NM_006954	exon5	c.T519C	p.C173C	TGCCTGTGGGAAA	.	55.0	11.0	84.0	0.0	.	103	.	.	Atlas-SNP
SORBS1	10580	hgsc.bcm.edu	hg19	10	97197265	97197265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SORBS1	NM_001034955	exon2	c.A58T	p.S20C	CATTGCTGCCAGG	.	148.0	11.0	189.0	0.0	.	185	.	.	Atlas-SNP
TSSC4	10078	hgsc.bcm.edu	hg19	11	2424029	2424029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TSSC4	NM_005706	exon2	c.G166T	p.G56W	CTGCCTGGGGAGG	.	100.0	12.0	94.0	0.0	.	19	.	.	Atlas-SNP
CLEC1A	51267	hgsc.bcm.edu	hg19	12	10228256	10228256	+	Splice_Site	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CLEC1A	NM_016511	exon5	c.392-2A>G	.	GTGTGCTTGGAAA	.	117.0	7.0	99.0	0.0	.	48	.	.	Atlas-SNP
LOH12CR1	118426	hgsc.bcm.edu	hg19	12	12514204	12514204	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LOH12CR1	NM_058169	exon2	c.C123T	p.S41S	GGGCTCCCAGGCC	.	148.0	12.0	162.0	0.0	.	13	.	.	Atlas-SNP
SETD8	387893	hgsc.bcm.edu	hg19	12	123880924	123880924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SETD8	NM_020382	exon5	c.T542G	p.L181R	GCAAACTTACGGA	.	34.0	8.0	50.0	0.0	.	35	.	.	Atlas-SNP
GAS6	2621	hgsc.bcm.edu	hg19	13	114537552	114537552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GAS6	NM_000820	exon8	c.A806G	p.K269R	GACAGCTTGAGGC	.	48.0	5.0	76.0	0.0	.	75	.	.	Atlas-SNP
NIN	51199	hgsc.bcm.edu	hg19	14	51190328	51190328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	NIN	NM_020921	exon31	c.G6255T	p.L2085F	TTTCAACAACTGG	.	111.0	18.0	136.0	0.0	.	475	.	.	Atlas-SNP
PPP1R14D	54866	hgsc.bcm.edu	hg19	15	41120819	41120819	+	Silent	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PPP1R14D	NM_017726	exon1	c.T21G	p.A7A	GCAGGAAGCAGGG	.	70.0	14.0	86.0	0.0	.	8	.	.	Atlas-SNP
WHAMM	123720	hgsc.bcm.edu	hg19	15	83481941	83481941	+	Silent	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	WHAMM	NM_001080435	exon2	c.T696A	p.V232V	ATTGGTTACCGTG	.	192.0	32.0	260.0	0.0	.	63	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89395101	89395101	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ACAN	NM_001135	exon11	c.C2103A	p.I701I	GTGGATCGTGACC	.	130.0	23.0	184.0	0.0	.	220	.	.	Atlas-SNP
CCDC137	339230	hgsc.bcm.edu	hg19	17	79638802	79638802	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CCDC137	NM_199287	exon4	c.C526T	p.R176X	AAAGTCCGACGGA	.	124.0	26.0	95.0	0.0	.	27	.	.	Atlas-SNP
TMEM150B	284417	hgsc.bcm.edu	hg19	19	55824349	55824349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TMEM150B	NM_001085488	exon8	c.G580A	p.A194T	AGAGCGCGAACAG	.	86.0	11.0	98.0	0.0	.	19	.	.	Atlas-SNP
ZNF133	7692	hgsc.bcm.edu	hg19	20	18296766	18296766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF133	NM_001083330	exon4	c.C1268A	p.T423N	ATTCAACCCTCAT	.	45.0	7.0	55.0	0.0	.	63	.	.	Atlas-SNP
ERG	2078	hgsc.bcm.edu	hg19	21	39755511	39755511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ERG	NM_001136154	exon12	c.G1275A	p.M425I	GGAGCCCATGTAC	.	81.0	12.0	102.0	0.0	.	78	.	.	Atlas-SNP
RTN4R	65078	hgsc.bcm.edu	hg19	22	20229527	20229527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RTN4R	NM_023004	exon2	c.C1129T	p.R377W	TGTGCCGTGGGCC	.	30.0	12.0	22.0	0.0	.	14	.	.	Atlas-SNP
THOC5	8563	hgsc.bcm.edu	hg19	22	29907254	29907254	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	THOC5	NM_001002878	exon20	c.A1829T	p.K610M	AGCTCCTTGTAGC	.	60.0	8.0	51.0	0.0	.	58	.	.	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	hg19	22	36700184	36700184	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	MYH9	NM_002473	exon19	c.C2247A	p.L749L	GCTGTCGAGCTCC	.	103.0	16.0	119.0	0.0	.	225	.	.	Atlas-SNP
CT45A5	441521	hgsc.bcm.edu	hg19	X	134947978	134947978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CT45A5	NM_001007551	exon3	c.C347G	p.P116R	CTTTTGGGAGAGG	.	79.0	30.0	68.0	0.0	.	26	.	.	Atlas-SNP
ND2	0	hgsc.bcm.edu	hg19	MT	4996	4996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	ENST00000361453	exon1	c.G527A	p.R176H	AGCTACGCAAAAT	.	142.0	13.0	26.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	14108	14108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	ENST00000361567	exon1	c.T1772C	p.F591S	TCTCTTTCTTCTT	.	154.0	39.0	26.0	0.0	.	.	.	.	Atlas-SNP
PSMA8	143471	hgsc.bcm.edu	hg19	18	23772351	23772352	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	PSMA8,rectum,carcinoma,0,1	PSMA8	NM_144662	exon7	c.747_748insA	p.K249fs	.	.	98.0	16.0	73.0	0.0	.	36	.	.	Atlas-Indel,Pindel
ARID1A	8289	hgsc.bcm.edu	hg19	1	27106176	27106176	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ARID1A	NM_006015	exon20	c.5786delG	p.S1929fs	.	.	111.0	10.0	114.0	0.0	.	842	.	.	Atlas-INDEL
CELSR3	1951	hgsc.bcm.edu	hg19	3	48691840	48691874	+	Frame_Shift_Del	DEL	GTTGGGGACACCTCCCAGAAGAAGAGGGCCCGTCA	GTTGGGGACACCTCCCAGAAGAAGAGGGCCCGTCA	-	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	GTTGGGGACACCTCCCAGAAGAAGAGGGCCCGTCA	GTTGGGGACACCTCCCAGAAGAAGAGGGCCCGTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CELSR3	NM_001407	exon7	c.5001_5035del	p.1667_1679del	.	.	146.0	12.0	273.0	0.0	.	237	.	.	Pindel
