Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TMEM51	55092	hgsc.bcm.edu	hg19	1	15541674	15541674	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TMEM51	NM_018022	exon2	c.T91A	p.W31R	GCCATGTGGAACC	.	36.0	16.0	39.0	0.0	.	28	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152084224	152084224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TCHH	NM_007113	exon3	c.A1469G	p.K490R	TCGAGCTTCAGCC	.	120.0	11.0	69.0	0.0	.	275	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152277443	152277443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FLG	NM_002016	exon3	c.C9919A	p.Q3307K	ACTGCTGGTGGCG	.	166.0	101.0	130.0	0.0	.	900	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152287879	152287879	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FLG	NM_002016	exon2	c.T54A	p.Y18X	TTTTGAATATTGC	.	437.0	87.0	327.0	0.0	.	900	.	.	Atlas-SNP
PYGO2	90780	hgsc.bcm.edu	hg19	1	154931467	154931467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PYGO2	NM_138300	exon3	c.G1009T	p.V337L	CGTTCACCTCACT	.	100.0	24.0	59.0	0.0	.	32	.	.	Atlas-SNP
INSRR	3645	hgsc.bcm.edu	hg19	1	156815580	156815580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	INSRR	NM_014215	exon10	c.G2005A	p.D669N	GCGGATCGTTGTT	.	180.0	70.0	108.0	0.0	.	309	.	.	Atlas-SNP
TRAF3IP3	80342	hgsc.bcm.edu	hg19	1	209953855	209953855	+	Missense_Mutation	SNP	C	C	G	rs147808288		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRAF3IP3	NM_025228	exon15	c.C1353G	p.N451K	CCCTAACGAAGTG	.	121.0	26.0	98.0	0.0	.	68	.	C|1.000;G|0.000	Atlas-SNP
MAP10	54627	hgsc.bcm.edu	hg19	1	232943321	232943321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_019090	exon1	c.A2552G	p.Y851C	CTTGCTATTCTGA	.	113.0	17.0	105.0	0.0	.	.	.	.	Atlas-SNP
C2orf71	388939	hgsc.bcm.edu	hg19	2	29294547	29294547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	C2orf71	NM_001029883	exon1	c.G2581T	p.E861X	GGGTTTCCTTGGG	.	109.0	35.0	119.0	0.0	.	146	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84784866	84784866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DNAH6	NM_001370	exon11	c.T1610G	p.I537S	ATGGTATTTTGGG	.	165.0	37.0	159.0	0.0	.	194	.	.	Atlas-SNP
LYPD6B	130576	hgsc.bcm.edu	hg19	2	150061778	150061778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	LYPD6B,NS,carcinoma,0,2	LYPD6B	NM_177964	exon4	c.C89T	p.S30L	AGAGTTCGGACCG	.	96.0	4.0	84.0	0.0	.	25	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179593438	179593438	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TTN	NM_001267550	exon66	c.A19215G	p.E6405E	AACACATTCCAAG	.	180.0	54.0	197.0	0.0	.	18412	.	.	Atlas-SNP
TRAK2	66008	hgsc.bcm.edu	hg19	2	202250957	202250957	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRAK2	NM_015049	exon14	c.A1947G	p.A649A	TCCACCTGCTGAA	.	122.0	36.0	152.0	0.0	.	62	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238253847	238253847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	COL6A3	NM_004369	exon33	c.G7102T	p.G2368C	TGTTGCCCTTGGG	.	86.0	13.0	113.0	0.0	.	608	.	.	Atlas-SNP
FANCD2	2177	hgsc.bcm.edu	hg19	3	10076196	10076196	+	Silent	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FANCD2	NM_001018115	exon4	c.G249C	p.L83L	GACCCTGAGGAGA	.	133.0	27.0	163.0	0.0	.	253	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	157.0	48.0	169.0	0.0	.	4904	.	.	Atlas-SNP
RAD54L2	23132	hgsc.bcm.edu	hg19	3	51690041	51690041	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	RAD54L2	NM_015106	exon19	c.G3081A	p.Q1027Q	TGTGCAGTCCACC	.	72.0	20.0	109.0	0.0	.	94	.	.	Atlas-SNP
KLF15	28999	hgsc.bcm.edu	hg19	3	126071030	126071030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KLF15	NM_014079	exon2	c.G736T	p.V246F	CCTTGACATTCTC	.	141.0	38.0	137.0	0.0	.	40	.	.	Atlas-SNP
CCDC96	257236	hgsc.bcm.edu	hg19	4	7043534	7043534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CCDC96	NM_153376	exon1	c.G1132A	p.E378K	TGTTCTCCAGCCG	.	81.0	18.0	93.0	0.0	.	34	.	.	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	hg19	4	7725465	7725465	+	Silent	SNP	C	C	T	rs373781482		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SORCS2	NM_020777	exon19	c.C2466T	p.D822D	TGGGGACGGCTTC	.	50.0	17.0	68.0	0.0	.	98	.	.	Atlas-SNP
CXCL2	2920	hgsc.bcm.edu	hg19	4	74964377	74964377	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CXCL2	NM_002089	exon3	c.A249G	p.K83K	ACAAGCTTTCTGC	.	113.0	44.0	153.0	0.0	.	6	.	.	Atlas-SNP
MTHFD2L	441024	hgsc.bcm.edu	hg19	4	75040279	75040279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MTHFD2L	NM_001144978	exon2	c.T200C	p.I67T	AAGAAATACAGCG	.	78.0	32.0	108.0	0.0	.	41	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187539094	187539094	+	Silent	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAT1	NM_005245	exon10	c.T8646C	p.N2882N	CTGGTAATTGTCT	.	95.0	28.0	107.0	0.0	.	500	.	.	Atlas-SNP
TAS2R1	50834	hgsc.bcm.edu	hg19	5	9630121	9630121	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TAS2R1	NM_019599	exon1	c.C24T	p.I8I	AAAATAGATAATG	.	261.0	119.0	234.0	1.0	.	84	.	.	Atlas-SNP
NADKD1	133686	hgsc.bcm.edu	hg19	5	36219713	36219713	+	Missense_Mutation	SNP	T	T	C	rs376035643		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NADKD1	NM_001085411	exon5	c.A629G	p.Y210C	CCACGATAGAACT	.	49.0	9.0	45.0	0.0	.	47	.	.	Atlas-SNP
ZNF366	167465	hgsc.bcm.edu	hg19	5	71756953	71756953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZNF366	NM_152625	exon2	c.A371G	p.Y124C	GAGTCATACTTGG	.	218.0	56.0	163.0	0.0	.	108	.	.	Atlas-SNP
THBS4	7060	hgsc.bcm.edu	hg19	5	79351761	79351761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	THBS4	NM_003248	exon3	c.A446G	p.Q149R	GCATCCAGGTGGA	.	135.0	23.0	85.0	0.0	.	82	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140564287	140564287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PCDHB16	NM_020957	exon1	c.G2153T	p.R718M	GGAGCAGGGCGGC	.	80.0	45.0	88.0	0.0	.	159	.	.	Atlas-SNP
PCDHB13	56123	hgsc.bcm.edu	hg19	5	140595793	140595793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PCDHB13	NM_018933	exon1	c.C2098A	p.L700I	TCTTCGCTCTTCC	.	60.0	28.0	65.0	0.0	.	142	.	.	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	hg19	5	161569259	161569259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GABRG2	NM_198903	exon8	c.G979A	p.V327I	CTCATTGTCGTCC	.	178.0	39.0	168.0	0.0	.	142	.	.	Atlas-SNP
CLTB	1212	hgsc.bcm.edu	hg19	5	175819809	175819809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CLTB	NM_007097	exon6	c.T656C	p.L219P	GACATGAGCACCG	.	133.0	27.0	93.0	0.0	.	17	.	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12122422	12122422	+	Silent	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HIVEP1	NM_002114	exon4	c.A2394T	p.P798P	AAAACCAGTGGGA	.	211.0	75.0	130.0	0.0	.	242	.	.	Atlas-SNP
DEK	7913	hgsc.bcm.edu	hg19	6	18258580	18258580	+	Missense_Mutation	SNP	T	T	C	rs147997771		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DEK	NM_003472	exon3	c.A202G	p.M68V	CTTGCATTGTCAA	.	281.0	89.0	218.0	0.0	.	31	.	T|1.000;C|0.000	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32064613	32064613	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TNXB	NM_019105	exon3	c.G1017A	p.T339T	GCTCCGCGTACCA	.	104.0	23.0	97.0	0.0	.	553	.	.	Atlas-SNP
DSE	29940	hgsc.bcm.edu	hg19	6	116720771	116720771	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DSE	NM_001080976	exon2	c.A358T	p.I120F	GAGAACATTGAAG	.	78.0	25.0	88.0	0.0	.	98	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160494446	160494446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGF2R	NM_000876	exon34	c.A4892G	p.K1631R	TGGACAAGCAGAC	.	88.0	25.0	100.0	0.0	.	251	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160523558	160523558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGF2R	NM_000876	exon46	c.T6850G	p.F2284V	GTGGGCTTTGACA	.	158.0	31.0	192.0	0.0	.	251	.	.	Atlas-SNP
NUDCD3	23386	hgsc.bcm.edu	hg19	7	44425666	44425666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NUDCD3	NM_015332	exon6	c.G1030T	p.G344C	GCTGGCCTCGGAA	.	66.0	19.0	75.0	0.0	.	20	.	.	Atlas-SNP
C7orf72	100130988	hgsc.bcm.edu	hg19	7	50135733	50135733	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	C7orf72	NM_001161834	exon1	c.T52A	p.S18T	AAAAGGTCCATCC	.	129.0	30.0	140.0	0.0	.	26	.	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	hg19	7	87168617	87168617	+	Silent	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ABCB1	NM_000927	exon20	c.C2364A	p.L788L	GTATCGGAGCCGC	.	46.0	10.0	29.0	0.0	.	263	.	.	Atlas-SNP
PEG10	23089	hgsc.bcm.edu	hg19	7	94293280	94293280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PEG10	NM_001172438	exon2	c.G640A	p.E214K	AAGCTGGAGCGCT	.	62.0	23.0	79.0	0.0	.	36	.	.	Atlas-SNP
ATP6V0A4	50617	hgsc.bcm.edu	hg19	7	138394373	138394373	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ATP6V0A4	NM_130841	exon20	c.C2425G	p.H809D	ACCAGTGCAGTCG	.	67.0	13.0	85.0	0.0	.	93	.	.	Atlas-SNP
ZNF467	168544	hgsc.bcm.edu	hg19	7	149462853	149462853	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	ZNF467,right_lower_lobe,carcinoma,0,1	ZNF467	NM_207336	exon5	c.C738T	p.C246C	CTCCGCGCACGGG	.	116.0	30.0	113.0	1.0	.	50	.	.	Atlas-SNP
CYP7B1	9420	hgsc.bcm.edu	hg19	8	65537039	65537039	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CYP7B1	NM_004820	exon2	c.G180T	p.L60L	TAAGTTCAGGACC	.	212.0	157.0	105.0	0.0	.	94	.	.	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	hg19	8	144810754	144810754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAM83H	NM_198488	exon5	c.C877T	p.R293C	CCATGCGGGCCAG	.	105.0	34.0	55.0	0.0	.	68	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144885835	144885835	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SCRIB	NM_015356	exon23	c.G3396A	p.E1132E	GATGCCCTCGTCT	.	62.0	14.0	45.0	0.0	.	192	.	.	Atlas-SNP
MFSD3	113655	hgsc.bcm.edu	hg19	8	145735205	145735205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MFSD3	NM_138431	exon1	c.G489T	p.W163C	CTCGTGGCCGCAA	.	121.0	56.0	53.0	0.0	.	17	.	.	Atlas-SNP
ZNF16	7564	hgsc.bcm.edu	hg19	8	146157910	146157910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZNF16	NM_006958	exon3	c.C263A	p.S88X	GCCTGTGATTCCA	.	500.0	48.0	239.0	0.0	.	80	.	.	Atlas-SNP
GAPVD1	26130	hgsc.bcm.edu	hg19	9	128094293	128094293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GAPVD1	NM_015635	exon12	c.G2262T	p.R754S	TGTCAGGGAGGTC	.	72.0	22.0	82.0	0.0	.	124	.	.	Atlas-SNP
TMEM26	219623	hgsc.bcm.edu	hg19	10	63195964	63195964	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TMEM26	NM_178505	exon2	c.A234G	p.P78P	TAATGATGGAACG	.	40.0	12.0	56.0	0.0	.	47	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135015133	135015133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KNDC1	NM_152643	exon17	c.G3118T	p.V1040L	AGGTCCGTAAAAG	.	112.0	35.0	101.0	0.0	.	155	.	.	Atlas-SNP
NAT10	55226	hgsc.bcm.edu	hg19	11	34152419	34152419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NAT10	NM_024662	exon13	c.G1304A	p.S435N	AACAGAGCGCCCA	.	60.0	16.0	58.0	0.0	.	78	.	.	Atlas-SNP
BRMS1	25855	hgsc.bcm.edu	hg19	11	66109566	66109566	+	Splice_Site	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	BRMS1	NM_015399	exon3	c.139+1G>T	.	GGCTCACCGGAGC	.	54.0	12.0	80.0	0.0	.	42	.	.	Atlas-SNP
NCAM1	4684	hgsc.bcm.edu	hg19	11	113103884	113103884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NCAM1	NM_001242607	exon15	c.C1616T	p.P539L	CTTCACCATCCAT	.	78.0	22.0	80.0	0.0	.	372	.	.	Atlas-SNP
NLRX1	79671	hgsc.bcm.edu	hg19	11	119054109	119054109	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NLRX1	NM_024618	exon10	c.C2889A	p.V963V	CGAGGTCAGGGCC	.	30.0	6.0	31.0	0.0	.	128	.	.	Atlas-SNP
ST14	6768	hgsc.bcm.edu	hg19	11	130058517	130058517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ST14	NM_021978	exon3	c.G334A	p.E112K	TCCACTGAGTTTG	.	52.0	10.0	60.0	0.0	.	82	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133790932	133790932	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGSF9B	NM_014987	exon18	c.C2688T	p.N896N	GTCCTCGTTCTCC	.	34.0	10.0	46.0	0.0	.	290	.	.	Atlas-SNP
AKAP3	10566	hgsc.bcm.edu	hg19	12	4737115	4737115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AKAP3	NM_006422	exon4	c.T953A	p.L318Q	TTCTTCAGTAGGA	.	120.0	35.0	108.0	0.0	.	212	.	.	Atlas-SNP
SLCO1B3	28234	hgsc.bcm.edu	hg19	12	21008043	21008043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SLCO1B3	NM_019844	exon4	c.G166A	p.E56K	CAAATAGAAAGGA	.	139.0	33.0	143.0	0.0	.	151	.	.	Atlas-SNP
TROAP	10024	hgsc.bcm.edu	hg19	12	49723688	49723688	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TROAP	NM_005480	exon12	c.C1213T	p.L405L	AGGTCACTGGAGG	.	127.0	8.0	121.0	0.0	.	80	.	.	Atlas-SNP
KRT79	338785	hgsc.bcm.edu	hg19	12	53223841	53223841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRT79	NM_175834	exon4	c.A821C	p.Q274P	ATCTCCTGGGTCA	.	107.0	26.0	114.0	0.0	.	78	.	.	Atlas-SNP
AVIL	10677	hgsc.bcm.edu	hg19	12	58207158	58207158	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AVIL	NM_006576	exon3	c.G190C	p.G64R	CCTTCCCGATCCA	.	65.0	10.0	106.0	0.0	.	60	.	.	Atlas-SNP
FAM19A2	338811	hgsc.bcm.edu	hg19	12	62148740	62148740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAM19A2	NM_178539	exon3	c.A172G	p.I58V	CTTCTATCTTGTT	.	130.0	37.0	145.0	0.0	.	38	.	.	Atlas-SNP
FGD6	55785	hgsc.bcm.edu	hg19	12	95603889	95603889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FGD6	NM_018351	exon2	c.A1171C	p.N391H	CACTGTTGGATTC	.	85.0	22.0	109.0	0.0	.	127	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124419244	124419244	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DNAH10	NM_207437	exon77	c.C13200T	p.P4400P	CAAACCCAAGGTG	.	105.0	30.0	112.0	0.0	.	888	.	.	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	hg19	13	42876851	42876851	+	Silent	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AKAP11	NM_016248	exon8	c.A3969T	p.P1323P	ATTACCACCAAGT	.	132.0	24.0	193.0	0.0	.	146	.	.	Atlas-SNP
POU4F1	5457	hgsc.bcm.edu	hg19	13	79175699	79175699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	POU4F1,NS,carcinoma,0,1	POU4F1	NM_006237	exon2	c.G1111A	p.E371K	AGGCCTCGAGGGA	.	42.0	8.0	51.0	0.0	.	43	.	.	Atlas-SNP
SLC8A3	6547	hgsc.bcm.edu	hg19	14	70634966	70634966	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SLC8A3	NM_183002	exon2	c.C174T	p.V58V	CAGGATGACACCC	.	76.0	5.0	94.0	0.0	.	234	.	.	Atlas-SNP
TRMT61A	115708	hgsc.bcm.edu	hg19	14	103996384	103996384	+	Silent	SNP	T	T	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRMT61A	NM_152307	exon2	c.T69A	p.G23G	CCATGGTGCAATG	.	42.0	11.0	64.0	0.0	.	15	.	.	Atlas-SNP
TRPM1	4308	hgsc.bcm.edu	hg19	15	31325061	31325061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRPM1	NM_001252020	exon21	c.C2834T	p.A945V	GAAATGGCCACGA	.	126.0	29.0	170.0	0.0	.	183	.	.	Atlas-SNP
TGM5	9333	hgsc.bcm.edu	hg19	15	43552276	43552276	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TGM5	NM_201631	exon3	c.T410A	p.I137N	AGCAGGATGAACT	.	55.0	7.0	42.0	0.0	.	88	.	.	Atlas-SNP
CRAMP1L	57585	hgsc.bcm.edu	hg19	16	1676129	1676129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CRAMP1L	NM_020825	exon2	c.A502T	p.T168S	TGGAGCACAGAGG	.	95.0	16.0	90.0	0.0	.	60	.	.	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18852978	18852978	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SMG1	NM_015092	exon41	c.C6605A	p.S2202X	AGTCCTGATCTTG	.	184.0	85.0	181.0	0.0	.	401	.	.	Atlas-SNP
SLC12A4	6560	hgsc.bcm.edu	hg19	16	67995581	67995581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	SLC12A4,colon,carcinoma,+1,1	SLC12A4	NM_001145962	exon2	c.C245G	p.S82W	AGAGACGATACCT	.	51.0	18.0	84.0	0.0	.	81	.	.	Atlas-SNP
SRCIN1	80725	hgsc.bcm.edu	hg19	17	36719591	36719591	+	Silent	SNP	A	A	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SRCIN1	NM_025248	exon5	c.T708G	p.A236A	GTTGCGAGCCTCG	.	79.0	15.0	63.0	0.0	.	66	.	.	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	hg19	17	39305911	39305911	+	Missense_Mutation	SNP	G	G	T	rs141058010	bycluster;alternate_allele	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	KRTAP4-5,NS,carcinoma,0,1	KRTAP4-5	NM_033188	exon1	c.C109A	p.R37S	TGGGGCGGCAGCA	.	74.0	8.0	66.0	0.0	.	34	.	.	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	hg19	17	39305940	39305940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRTAP4-5	NM_033188	exon1	c.A80G	p.Q27R	GTGGTCTGGCAGC	.	93.0	9.0	80.0	0.0	.	34	.	.	Atlas-SNP
KRTAP4-5	85289	hgsc.bcm.edu	hg19	17	39305941	39305941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRTAP4-5	NM_033188	exon1	c.C79A	p.Q27K	TGGTCTGGCAGCA	.	94.0	9.0	80.0	0.0	.	34	.	.	Atlas-SNP
DHX8	1659	hgsc.bcm.edu	hg19	17	41590858	41590858	+	Silent	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DHX8	NM_004941	exon17	c.G2631T	p.T877T	GGTGACGCCTATT	.	77.0	26.0	151.0	0.0	.	98	.	.	Atlas-SNP
GPATCH8	23131	hgsc.bcm.edu	hg19	17	42552196	42552196	+	Splice_Site	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GPATCH8	NM_001002909	exon3	c.120+1G>T	.	ATCTTACCGATTC	.	106.0	27.0	112.0	0.0	.	114	.	.	Atlas-SNP
NPB	256933	hgsc.bcm.edu	hg19	17	79860624	79860624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_148896	exon2	c.A378G	p.X126W	CGCCTGAGCCCGG	.	177.0	53.0	159.0	0.0	.	.	.	.	Atlas-SNP
LINGO3	645191	hgsc.bcm.edu	hg19	19	2290105	2290105	+	Silent	SNP	C	C	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	LINGO3	NM_001101391	exon2	c.G1671C	p.G557G	GTGCTGCCCGCGG	.	120.0	29.0	166.0	0.0	.	19	.	.	Atlas-SNP
ARHGEF18	23370	hgsc.bcm.edu	hg19	19	7528840	7528840	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ARHGEF18	NM_001130955	exon12	c.G2208A	p.K736K	CACCAAGAGTAAG	.	80.0	22.0	104.0	0.0	.	129	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9088914	9088914	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MUC16	NM_024690	exon1	c.G2901A	p.W967X	CTCTGGCCAAGTT	.	131.0	35.0	163.0	0.0	.	4315	.	.	Atlas-SNP
AP1M1	8907	hgsc.bcm.edu	hg19	19	16319967	16319967	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AP1M1	NM_001130524	exon5	c.C525A	p.V175V	GGACGTCATCGAG	.	122.0	25.0	144.0	0.0	.	48	.	.	Atlas-SNP
ANKLE1	126549	hgsc.bcm.edu	hg19	19	17397348	17397348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ANKLE1	NM_152363	exon9	c.A1835T	p.Q612L	ACATCCAGGCCCG	.	91.0	25.0	82.0	0.0	.	27	.	.	Atlas-SNP
CEP89	84902	hgsc.bcm.edu	hg19	19	33370231	33370231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CEP89	NM_032816	exon19	c.G2189T	p.R730L	ATTCTTCGGTTTT	.	65.0	15.0	72.0	0.0	.	82	.	.	Atlas-SNP
HLCS	3141	hgsc.bcm.edu	hg19	21	38128887	38128887	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HLCS	NM_000411	exon11	c.G1965T	p.G655G	GTTGGGCCCTTTG	.	159.0	44.0	155.0	0.0	.	64	.	.	Atlas-SNP
ENOX2	10495	hgsc.bcm.edu	hg19	X	129813673	129813673	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ENOX2	NM_182314	exon7	c.A390G	p.V130V	CACAAATACTGTT	.	121.0	65.0	148.0	0.0	.	70	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9925	9925	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	ENST00000362079	exon1	c.G719A	p.W240X	CCGCCTGATACTG	.	32.0	30.0	12.0	0.0	.	.	.	.	Atlas-SNP
TRIP12	9320	hgsc.bcm.edu	hg19	2	230661327	230661327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRIP12	NM_004238	exon24	c.3572delA	p.H1191fs	.	.	183.0	46.0	142.0	0.0	.	207	.	.	Atlas-Indel,Pindel
FANCM	57697	hgsc.bcm.edu	hg19	14	45650881	45650882	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FANCM	NM_020937	exon16	c.4359_4360insA	p.V1453fs	.	.	120.0	32.0	148.0	0.0	.	225	.	.	Atlas-Indel,Pindel
TBATA	219793	hgsc.bcm.edu	hg19	10	72541762	72541764	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_152710	exon4	c.71_73del	p.24_25del	.	.	72.0	10.0	70.0	0.0	.	.	.	.	Atlas-INDEL
TF	7018	hgsc.bcm.edu	hg19	3	133494329	133494330	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TF	NM_001063	exon15	c.1739_1740del	p.580_580del	.	.	59.0	10.0	63.0	0.0	.	116	.	.	Pindel
