Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIAA1522	57648	hgsc.bcm.edu	hg19	1	33235673	33235673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA1522	NM_020888	exon6	c.G893T	p.R298L	TTGACCGTGTCTA	.	37.0	17.0	36.0	0.0	.	68	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39748038	39748038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	MACF1	NM_012090	exon8	c.C702A	p.H234Q	CATTCACCGATAC	.	50.0	16.0	62.0	0.0	.	909	.	.	Atlas-SNP
ROR1	4919	hgsc.bcm.edu	hg19	1	64643503	64643503	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ROR1	NM_005012	exon9	c.G1779T	p.L593L	TTTTCTGCACATT	.	48.0	19.0	56.0	0.0	.	113	.	.	Atlas-SNP
USF1	7391	hgsc.bcm.edu	hg19	1	161011514	161011514	+	Silent	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	USF1	NM_001276373	exon6	c.G399T	p.S133S	ACTCCCCGATGTG	.	48.0	28.0	53.0	0.0	.	29	.	.	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	hg19	1	220406191	220406191	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	RAB3GAP2	NM_012414	exon2	c.T130G	p.W44G	CTTCCCAGTCTGT	.	174.0	76.0	219.0	0.0	.	120	.	.	Atlas-SNP
SNTG2	54221	hgsc.bcm.edu	hg19	2	1204797	1204797	+	Silent	SNP	G	G	T	rs141600263	bycluster;by1000genomes;alternate_allele	TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SNTG2	NM_018968	exon9	c.G600T	p.S200S	CCCATCGTCACCT	.	24.0	12.0	58.0	0.0	.	125	.	G|1.000;A|0.000	Atlas-SNP
CHRNA1	1134	hgsc.bcm.edu	hg19	2	175624301	175624301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CHRNA1	NM_001039523	exon2	c.A104C	p.Y35S	CTGCTGTAGTCTT	.	33.0	9.0	38.0	0.0	.	92	.	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	204009591	204009591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NBEAL1	NM_001114132	exon31	c.G5030T	p.C1677F	AATATTGTAATTC	.	81.0	29.0	103.0	0.0	.	266	.	.	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	hg19	2	219614829	219614829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTLL4	NM_014640	exon15	c.A2833G	p.I945V	GAGGATATCATTT	.	42.0	14.0	61.0	0.0	.	96	.	.	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	46000930	46000930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FYCO1	NM_024513	exon12	c.A3542G	p.D1181G	TTACAGTCGAGGC	.	48.0	14.0	89.0	0.0	.	115	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62467525	62467525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CADPS	NM_003716	exon22	c.C3046A	p.P1016T	CATTGGGTAGGTT	.	110.0	34.0	164.0	0.0	.	387	.	.	Atlas-SNP
EGF	1950	hgsc.bcm.edu	hg19	4	110925746	110925746	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	EGF	NM_001963	exon22	c.G3259T	p.E1087X	GACACTGAGGATG	.	38.0	11.0	46.0	0.0	.	113	.	.	Atlas-SNP
TLL1	7092	hgsc.bcm.edu	hg19	4	166981307	166981307	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TLL1	NM_012464	exon15	c.G1974A	p.V658V	TTCTGTGAAGTTT	.	54.0	17.0	95.0	0.0	.	194	.	.	Atlas-SNP
SPCS3	60559	hgsc.bcm.edu	hg19	4	177241334	177241334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPCS3	NM_021928	exon1	c.G107A	p.S36N	ACAGGAGCGTCCC	.	30.0	12.0	38.0	0.0	.	15	.	.	Atlas-SNP
FAM135A	57579	hgsc.bcm.edu	hg19	6	71243558	71243558	+	Splice_Site	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	FAM135A	NM_001105531	exon18	c.3377+1G>T	.	AATAAGGTATCTT	.	63.0	16.0	65.0	0.0	.	181	.	.	Atlas-SNP
NME8	51314	hgsc.bcm.edu	hg19	7	37890296	37890296	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_016616	exon5	c.A157T	p.K53X	AAATTGAAAAATG	.	88.0	24.0	97.0	0.0	.	.	.	.	Atlas-SNP
KIAA1967	57805	hgsc.bcm.edu	hg19	8	22471762	22471762	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KIAA1967	NM_021174	exon9	c.G862C	p.E288Q	GAAAAGGAGGCAG	.	23.0	15.0	70.0	0.0	.	72	.	.	Atlas-SNP
ANK1	286	hgsc.bcm.edu	hg19	8	41552758	41552758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ANK1	NM_001142446	exon28	c.A3175G	p.K1059E	GCTCCTTCCACAC	.	21.0	17.0	43.0	0.0	.	497	.	.	Atlas-SNP
NOV	4856	hgsc.bcm.edu	hg19	8	120431544	120431544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NOV	NM_002514	exon4	c.G736A	p.V246M	TGCATGGTGCGGC	.	84.0	18.0	24.0	0.0	.	51	.	.	Atlas-SNP
TTC18	118491	hgsc.bcm.edu	hg19	10	75013758	75013758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTC18	NM_145170	exon28	c.T3341C	p.V1114A	AAGCCAACTGTTT	.	41.0	25.0	69.0	0.0	.	106	.	.	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94267913	94267913	+	Silent	SNP	A	A	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	IDE	NM_004969	exon8	c.T1110C	p.F370F	AAACATAAAACCT	.	111.0	41.0	170.0	0.0	.	77	.	.	Atlas-SNP
PHRF1	57661	hgsc.bcm.edu	hg19	11	592654	592654	+	Silent	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PHRF1	NM_020901	exon6	c.C600G	p.L200L	TTTGCTCTGCGAC	.	26.0	8.0	40.0	0.0	.	188	.	.	Atlas-SNP
PRKRIR	5612	hgsc.bcm.edu	hg19	11	76063483	76063483	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PRKRIR	NM_004705	exon5	c.G711A	p.Q237Q	TAGCATCTGCCTC	.	313.0	200.0	176.0	0.0	.	65	.	.	Atlas-SNP
SC5D	6309	hgsc.bcm.edu	hg19	11	121177921	121177921	+	Silent	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001024956	exon5	c.G600A	p.L200L	CATCTTGGTTAAT	.	80.0	22.0	201.0	0.0	.	.	.	.	Atlas-SNP
KRT6B	3854	hgsc.bcm.edu	hg19	12	52845422	52845422	+	Silent	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	KRT6B	NM_005555	exon1	c.C441A	p.P147P	GTTGAGGGGAGTC	.	114.0	34.0	187.0	0.0	.	90	.	.	Atlas-SNP
E2F7	144455	hgsc.bcm.edu	hg19	12	77427753	77427753	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	E2F7	NM_203394	exon8	c.A1193C	p.Q398P	CAGACTTGAATCT	.	67.0	36.0	113.0	0.0	.	201	.	.	Atlas-SNP
SPRY2	10253	hgsc.bcm.edu	hg19	13	80911669	80911669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	SPRY2	NM_005842	exon2	c.G172T	p.G58W	TAGGCCCCTCTGT	.	42.0	21.0	95.0	0.0	.	28	.	.	Atlas-SNP
LIPC	3990	hgsc.bcm.edu	hg19	15	58830682	58830682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	LIPC	NM_000236	exon2	c.C239T	p.S80F	ACTCCTCCCTGCC	.	44.0	11.0	80.0	0.0	.	56	.	.	Atlas-SNP
PDE8A	5151	hgsc.bcm.edu	hg19	15	85610299	85610299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PDE8A	NM_173454	exon3	c.T298A	p.C100S	AGGGCATGTGAAA	.	41.0	17.0	61.0	0.0	.	50	.	.	Atlas-SNP
NFAT5	10725	hgsc.bcm.edu	hg19	16	69689669	69689669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	NFAT5	NM_001113178	exon6	c.T1163C	p.V388A	TAGAAGTCGGCCT	.	23.0	15.0	67.0	0.0	.	184	.	.	Atlas-SNP
ABCC3	8714	hgsc.bcm.edu	hg19	17	48745041	48745041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ABCC3	NM_003786	exon12	c.G1558A	p.G520S	AGGCAGGGTGAGC	.	29.0	11.0	38.0	0.0	.	138	.	.	Atlas-SNP
CD300C	10871	hgsc.bcm.edu	hg19	17	72540897	72540897	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CD300C	NM_006678	exon2	c.T251A	p.I84N	TCCCTGATGGACA	.	50.0	15.0	96.0	0.0	.	41	.	.	Atlas-SNP
ZBTB14	7541	hgsc.bcm.edu	hg19	18	5291933	5291933	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_001243702	exon4	c.T274A	p.Y92N	ACATGTAGTTCAG	.	52.0	30.0	149.0	0.0	.	.	.	.	Atlas-SNP
JUNB	3726	hgsc.bcm.edu	hg19	19	12902979	12902979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	JUNB	NM_002229	exon1	c.C394A	p.Q132K	GAGGAGCAGGAGG	.	33.0	16.0	35.0	0.0	.	14	.	.	Atlas-SNP
LYL1	4066	hgsc.bcm.edu	hg19	19	13211948	13211948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	LYL1	NM_005583	exon2	c.C38T	p.T13I	GTCATGGTGGGGC	.	37.0	10.0	35.0	0.0	.	17	.	.	Atlas-SNP
CYP2A13	1553	hgsc.bcm.edu	hg19	19	41594950	41594950	+	Silent	SNP	C	C	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CYP2A13	NM_000766	exon2	c.C297T	p.S99S	GTTCAGCGGGCGA	.	49.0	20.0	92.0	0.0	.	90	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	40979316	40979316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	PTPRT	NM_007050	exon11	c.C1817A	p.T606N	GTGATGGTCGTGT	.	40.0	18.0	48.0	0.0	.	372	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	40060133	40060133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	CACNA1I	NM_021096	exon20	c.C3635A	p.T1212K	TCTTCACGGCCAT	.	46.0	16.0	53.0	0.0	.	264	.	.	Atlas-SNP
TTC38	55020	hgsc.bcm.edu	hg19	22	46677505	46677505	+	Missense_Mutation	SNP	A	A	G	rs370933560		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TTC38	NM_017931	exon7	c.A625G	p.I209V	TTATCTATTAACC	.	43.0	14.0	64.0	0.0	.	40	.	.	Atlas-SNP
TBL1X	6907	hgsc.bcm.edu	hg19	X	9677338	9677338	+	Silent	SNP	C	C	G	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	TBL1X	NM_001139466	exon14	c.C1287G	p.S429S	GGCATCCTGCTCG	.	52.0	33.0	93.0	0.0	.	103	.	.	Atlas-SNP
ENOX2	10495	hgsc.bcm.edu	hg19	X	129813524	129813524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	ENOX2	NM_182314	exon7	c.A539G	p.Y180C	GACAGATACAGGG	.	49.0	43.0	83.0	0.0	.	70	.	.	Atlas-SNP
NYAP2	57624	hgsc.bcm.edu	hg19	2	226378129	226378129	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A7SF-01A-11D-A34Z-10	TCGA-RC-A7SF-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d6704f86-2ea2-4f7c-8043-351f98123fc8	e9d14b6e-0f63-4c76-8189-1f7e8fad71db	.	.	NM_020864	exon3	c.263delT	p.V88fs	.	.	55.0	26.0	100.0	0.0	.	.	.	.	Atlas-Indel,Pindel
