Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
UBR4	23352	hgsc.bcm.edu	hg19	1	19513738	19513738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	UBR4	NM_020765	exon13	c.A1552T	p.I518L	TCTGTATGGAGGT	.	82.0	19.0	60.0	0.0	.	415	.	.	Atlas-SNP
HMGB4	127540	hgsc.bcm.edu	hg19	1	34329977	34329977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HMGB4	NM_145205	exon2	c.C185A	p.A62D	ATGAAGCCCTGGC	.	117.0	18.0	88.0	0.0	.	27	.	.	Atlas-SNP
MSH4	4438	hgsc.bcm.edu	hg19	1	76262910	76262910	+	Silent	SNP	T	T	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MSH4	NM_002440	exon1	c.T240G	p.A80A	GCCAGCTCAAGGC	.	36.0	12.0	28.0	0.0	.	147	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32842852	32842852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BIRC6	NM_016252	exon74	c.C14455A	p.P4819T	TTGGATCCTGACA	.	85.0	30.0	51.0	0.0	.	838	.	.	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33413881	33413881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LTBP1	NM_206943	exon7	c.A1664G	p.Q555R	AGACACAGCTTGG	.	103.0	35.0	84.0	0.0	.	317	.	.	Atlas-SNP
CCT7	10574	hgsc.bcm.edu	hg19	2	73479859	73479859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CCT7	NM_006429	exon12	c.A1502G	p.N501S	GGATCAATGCGCT	.	198.0	83.0	119.0	0.0	.	60	.	.	Atlas-SNP
NAT8	9027	hgsc.bcm.edu	hg19	2	73868638	73868638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NAT8	NM_003960	exon2	c.C118A	p.P40T	TTCGAGGCAGCTT	.	86.0	36.0	68.0	0.0	.	26	.	.	Atlas-SNP
C2orf68	388969	hgsc.bcm.edu	hg19	2	85836186	85836186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C2orf68	NM_001013649	exon4	c.A383G	p.D128G	GGGTCATCACCCT	.	93.0	35.0	71.0	0.0	.	5	.	.	Atlas-SNP
OLA1	29789	hgsc.bcm.edu	hg19	2	175111522	175111522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OLA1	NM_013341	exon2	c.G22A	p.D8N	TTCCATCACCTCC	.	288.0	30.0	138.0	0.0	.	37	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212576873	212576873	+	Missense_Mutation	SNP	C	C	G	rs149272231	byfrequency;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ERBB4	NM_001042599	exon9	c.G1026C	p.L342F	TGACATCAATGAT	.	140.0	73.0	134.0	0.0	.	480	.	C|1.000;T|0.000	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	hg19	2	240158361	240158361	+	Splice_Site	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HDAC4	NM_006037	exon4	c.23-1G>C	.	GTCCATCTGGAGA	.	169.0	86.0	144.0	0.0	.	127	.	.	Atlas-SNP
TRIM71	131405	hgsc.bcm.edu	hg19	3	32932669	32932669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TRIM71	NM_001039111	exon4	c.G1973A	p.G658D	CAGCCGGCGTGGC	.	51.0	17.0	28.0	0.0	.	73	.	.	Atlas-SNP
SLC22A14	9389	hgsc.bcm.edu	hg19	3	38347895	38347895	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC22A14	NM_004803	exon1	c.C378T	p.G126G	CAATGGCAGTTTC	.	114.0	24.0	122.0	0.0	.	64	.	.	Atlas-SNP
RAD54L2	23132	hgsc.bcm.edu	hg19	3	51661661	51661661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RAD54L2	NM_015106	exon3	c.C232G	p.Q78E	TCATCTCAGTCTG	.	113.0	34.0	93.0	0.0	.	94	.	.	Atlas-SNP
BCHE	590	hgsc.bcm.edu	hg19	3	165548695	165548695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BCHE	NM_000055	exon2	c.G127A	p.G43R	TCATCCCTCTGAC	.	216.0	26.0	168.0	0.0	.	136	.	.	Atlas-SNP
HES1	3280	hgsc.bcm.edu	hg19	3	193854425	193854425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HES1	NM_005524	exon2	c.A128T	p.E43V	TTATGGAGAAAAG	.	190.0	87.0	137.0	0.0	.	23	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195518119	195518119	+	Missense_Mutation	SNP	A	A	T	rs201789760	bycluster	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MUC4	NM_018406	exon2	c.T332A	p.M111K	GTCTCCATCACAT	.	218.0	26.0	128.0	0.0	.	1505	.	.	Atlas-SNP
CDH10	1008	hgsc.bcm.edu	hg19	5	24487960	24487960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	CDH10,NS,carcinoma,0,1	CDH10	NM_006727	exon12	c.G2179A	p.A727T	GGGGTGCGGTGGG	.	114.0	14.0	88.0	0.0	.	391	.	.	Atlas-SNP
CRHBP	1393	hgsc.bcm.edu	hg19	5	76249897	76249897	+	Silent	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	CRHBP,NS,carcinoma,0,1	CRHBP	NM_001882	exon3	c.C219G	p.T73T	CTTCACCGCCGAC	.	99.0	35.0	74.0	0.0	.	46	.	.	Atlas-SNP
LNPEP	4012	hgsc.bcm.edu	hg19	5	96360250	96360250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LNPEP	NM_005575	exon15	c.G2587A	p.V863M	ACAACTGTGTTCA	.	74.0	8.0	56.0	0.0	.	80	.	.	Atlas-SNP
ACSL6	23305	hgsc.bcm.edu	hg19	5	131298318	131298318	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ACSL6	NM_001009185	exon18	c.G1767A	p.Q589Q	TTCTCCCTGAGCA	.	155.0	8.0	122.0	0.0	.	169	.	.	Atlas-SNP
PCDHA5	56143	hgsc.bcm.edu	hg19	5	140203515	140203515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	PCDHA5_ENST00000529859,NS,carcinoma,0,4	PCDHA5	NM_018908	exon1	c.G2155A	p.A719T	TACACCGCGCTGC	.	135.0	16.0	92.0	0.0	.	361	.	.	Atlas-SNP
COL23A1	91522	hgsc.bcm.edu	hg19	5	177673419	177673419	+	Silent	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	COL23A1	NM_173465	exon23	c.G1332T	p.S444S	CTCACCCGACGCA	.	87.0	35.0	60.0	0.0	.	47	.	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178541106	178541106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	ADAMTS2,rectum,carcinoma,0,1	ADAMTS2	NM_014244	exon22	c.G3398T	p.R1133L	GATGGCCGCACCT	.	241.0	111.0	192.0	0.0	.	190	.	.	Atlas-SNP
SRPK1	6732	hgsc.bcm.edu	hg19	6	35806150	35806150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SRPK1	NM_003137	exon15	c.G1747T	p.A583S	TTCCTGCCACAAT	.	98.0	38.0	64.0	0.0	.	61	.	.	Atlas-SNP
MAPK14	1432	hgsc.bcm.edu	hg19	6	36075327	36075327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	MAPK14_ENST00000229794,NS,carcinoma,0,3	MAPK14	NM_139012	exon11	c.G937A	p.D313N	TACCACGATCCTG	.	128.0	50.0	80.0	0.0	.	75	.	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	hg19	7	20198542	20198542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MACC1	NM_182762	exon5	c.A1442G	p.H481R	AACAAGTGCATCT	.	121.0	54.0	98.0	0.0	.	99	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48319312	48319312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ABCA13	NM_152701	exon18	c.A8521G	p.T2841A	ACTTCCACAAGAA	.	154.0	57.0	112.0	0.0	.	1192	.	.	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	hg19	7	69583171	69583171	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AUTS2	NM_001127231	exon3	c.A576T	p.G192G	CAGTGGAGAATCC	.	194.0	62.0	158.0	0.0	.	173	.	.	Atlas-SNP
MLXIPL	51085	hgsc.bcm.edu	hg19	7	73009991	73009991	+	Silent	SNP	C	C	A	rs370481859	alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MLXIPL	NM_032951	exon15	c.G2286T	p.T762T	GTGCAGCGTACGG	.	126.0	50.0	90.0	0.0	.	54	.	.	Atlas-SNP
SEMA3A	10371	hgsc.bcm.edu	hg19	7	83606504	83606504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	SEMA3A,colon,carcinoma,0,1	SEMA3A	NM_006080	exon15	c.G1661T	p.R554I	TGTCGTCTTGTGC	.	345.0	133.0	324.0	0.0	.	121	.	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88847522	88847522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ZNF804B	NM_181646	exon2	c.C162A	p.N54K	GGCAAACTTTTAC	.	114.0	41.0	83.0	0.0	.	322	.	.	Atlas-SNP
ATXN7L1	222255	hgsc.bcm.edu	hg19	7	105248313	105248313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ATXN7L1	NM_020725	exon12	c.A2572G	p.R858G	GAGTCCTTATCCT	.	220.0	73.0	150.0	0.0	.	56	.	.	Atlas-SNP
LAMB4	22798	hgsc.bcm.edu	hg19	7	107704317	107704317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LAMB4	NM_007356	exon22	c.T2950C	p.C984R	GGCTGCAGGACTC	.	242.0	92.0	183.0	0.0	.	253	.	.	Atlas-SNP
ARF5	381	hgsc.bcm.edu	hg19	7	127230141	127230141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARF5	NM_001662	exon4	c.A280G	p.S94G	GTGGACAGTAATG	.	48.0	17.0	33.0	0.0	.	20	.	.	Atlas-SNP
PIP	5304	hgsc.bcm.edu	hg19	7	142836665	142836665	+	Missense_Mutation	SNP	C	C	T	rs148216903	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PIP	NM_002652	exon4	c.C371T	p.P124L	TCTGCCCTGATGA	.	240.0	18.0	158.0	0.0	.	34	.	C|0.997;G|0.003	Atlas-SNP
SLC24A2	25769	hgsc.bcm.edu	hg19	9	19576992	19576992	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SLC24A2	NM_020344	exon5	c.C1158A	p.L386L	CTTGTGGAGAATT	.	104.0	64.0	118.0	0.0	.	93	.	.	Atlas-SNP
OR13A1	79290	hgsc.bcm.edu	hg19	10	45799382	45799382	+	Silent	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OR13A1	NM_001004297	exon4	c.C489A	p.A163A	GGCTGTGGCCAGC	.	57.0	15.0	37.0	0.0	.	49	.	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	hg19	10	50530973	50530973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C10orf71	NM_001135196	exon3	c.T383C	p.V128A	TGGAGGTGCCAGT	.	89.0	36.0	54.0	0.0	.	179	.	.	Atlas-SNP
C10orf76	79591	hgsc.bcm.edu	hg19	10	103783452	103783452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	C10orf76	NM_024541	exon7	c.A562T	p.I188L	CAAATATGCTGTT	.	207.0	52.0	159.0	0.0	.	48	.	.	Atlas-SNP
OR5L2	26338	hgsc.bcm.edu	hg19	11	55594866	55594866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	OR5L2	NM_001004739	exon1	c.C172A	p.P58T	CACACCCCCGTGT	.	269.0	109.0	252.0	0.0	.	135	.	.	Atlas-SNP
LRRC55	219527	hgsc.bcm.edu	hg19	11	56949612	56949612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	LRRC55	NM_001005210	exon1	c.C245T	p.P82L	GCTGCCCCGTCCT	.	90.0	36.0	60.0	0.0	.	52	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66475653	66475653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	SPTBN2	NM_006946	exon11	c.C1309T	p.R437W	TCTCCCGCATGGC	.	146.0	34.0	103.0	0.0	.	188	.	.	Atlas-SNP
MMP13	4322	hgsc.bcm.edu	hg19	11	102816423	102816423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MMP13	NM_002427	exon9	c.G1267C	p.D423H	GGAAGTCTTCTTC	.	76.0	23.0	67.0	0.0	.	75	.	.	Atlas-SNP
MMP13	4322	hgsc.bcm.edu	hg19	11	102816459	102816459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MMP13	NM_002427	exon9	c.A1231G	p.I411V	CCATAATATGGTT	.	74.0	23.0	61.0	0.0	.	75	.	.	Atlas-SNP
NTF3	4908	hgsc.bcm.edu	hg19	12	5604082	5604082	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NTF3	NM_001102654	exon2	c.C741T	p.L247L	TAAACTCGTGGGC	.	55.0	34.0	76.0	0.0	.	50	.	.	Atlas-SNP
PTPRO	5800	hgsc.bcm.edu	hg19	12	15739913	15739913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PTPRO	NM_030667	exon24	c.G3338C	p.S1113T	CAGAAAGTATCCT	.	91.0	25.0	120.0	0.0	.	148	.	.	Atlas-SNP
KRT1	3848	hgsc.bcm.edu	hg19	12	53069229	53069229	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	KRT1	NM_006121	exon9	c.C1683T	p.S561S	ACCTCCGGAGCCG	.	29.0	4.0	2.0	0.0	.	110	.	.	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121416684	121416684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HNF1A	NM_000545	exon1	c.T113C	p.L38P	ACCTCCTGGCTGG	.	127.0	44.0	112.0	0.0	.	302	.	.	Atlas-SNP
PITPNM2	57605	hgsc.bcm.edu	hg19	12	123498529	123498529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PITPNM2	NM_020845	exon3	c.C139T	p.P47S	TGTACGGCCGGTT	.	141.0	64.0	115.0	0.0	.	105	.	.	Atlas-SNP
AACS	65985	hgsc.bcm.edu	hg19	12	125561142	125561142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AACS	NM_023928	exon3	c.G343T	p.A115S	AGAGTTGCCCTTT	.	78.0	31.0	60.0	0.0	.	59	.	.	Atlas-SNP
PROSER1	80209	hgsc.bcm.edu	hg19	13	39586338	39586338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	NM_025138	exon12	c.C2594A	p.S865Y	AAAACAGAACTGC	.	191.0	74.0	144.0	0.0	.	.	.	.	Atlas-SNP
ABCC4	10257	hgsc.bcm.edu	hg19	13	95858910	95858910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ABCC4	NM_005845	exon8	c.T1037A	p.I346N	GCTGTGATCACAC	.	72.0	28.0	57.0	0.0	.	248	.	.	Atlas-SNP
CRIP2	1397	hgsc.bcm.edu	hg19	14	105945934	105945934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CRIP2	NM_001270837	exon8	c.G793T	p.G265C	AACACCGGTGCGG	.	79.0	34.0	60.0	0.0	.	7	.	.	Atlas-SNP
GABPB1	2553	hgsc.bcm.edu	hg19	15	50596296	50596296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GABPB1	NM_016654	exon3	c.A143G	p.Y48C	TGACCATACTGTG	.	121.0	44.0	87.0	0.0	.	33	.	.	Atlas-SNP
CGNL1	84952	hgsc.bcm.edu	hg19	15	57730244	57730244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CGNL1	NM_032866	exon2	c.G47T	p.G16V	AATATGGGGTCCA	.	47.0	20.0	23.0	0.0	.	125	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63988457	63988457	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HERC1	NM_003922	exon27	c.A4987T	p.R1663X	TCAATCTGCTTCC	.	147.0	58.0	112.0	0.0	.	624	.	.	Atlas-SNP
CLK3	1198	hgsc.bcm.edu	hg19	15	74919878	74919878	+	Splice_Site	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CLK3	NM_003992	exon9	c.913-2A>G	.	CCTTTCAGAGCTG	.	105.0	37.0	83.0	0.0	.	78	.	.	Atlas-SNP
PSTPIP1	9051	hgsc.bcm.edu	hg19	15	77310567	77310567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PSTPIP1	NM_003978	exon2	c.A115T	p.M39L	AAAGACATGGAGG	.	77.0	31.0	53.0	0.0	.	50	.	.	Atlas-SNP
ARNT2	9915	hgsc.bcm.edu	hg19	15	80873588	80873588	+	Silent	SNP	A	A	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARNT2	NM_014862	exon17	c.A1761T	p.P587P	AATCCCATCTCAG	.	193.0	83.0	161.0	0.0	.	88	.	.	Atlas-SNP
AP3B2	8120	hgsc.bcm.edu	hg19	15	83330629	83330629	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	AP3B2	NM_004644	exon24	c.G2907A	p.G969G	CAGCTCCCCAACA	.	108.0	50.0	87.0	0.0	.	103	.	.	Atlas-SNP
PDZD9	255762	hgsc.bcm.edu	hg19	16	21995863	21995863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PDZD9	NM_173806	exon3	c.C340T	p.H114Y	CAGGGTGATGCAC	.	247.0	56.0	261.0	0.0	.	18	.	.	Atlas-SNP
MVP	9961	hgsc.bcm.edu	hg19	16	29848051	29848051	+	Silent	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MVP	NM_017458	exon7	c.G681C	p.L227L	AGCCCTGCACCTC	.	43.0	10.0	27.0	0.0	.	80	.	.	Atlas-SNP
ASPHD1	253982	hgsc.bcm.edu	hg19	16	29912699	29912699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ASPHD1	NM_181718	exon1	c.C407A	p.P136H	GGGATCCCGGGGA	.	35.0	16.0	31.0	0.0	.	28	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578290	7578290	+	Splice_Site	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	TP53_ENST00000545858,colon,carcinoma,+2,71	TP53	NM_000546	exon7	c.560-1G>A	.	CCAGACCTAAGAG	.	71.0	41.0	87.0	0.0	.	33396	.	.	Atlas-SNP
MED13	9969	hgsc.bcm.edu	hg19	17	60088411	60088411	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MED13	NM_005121	exon9	c.C1467T	p.D489D	ATCTGCGTCCATG	.	351.0	34.0	287.0	0.0	.	181	.	.	Atlas-SNP
USP36	57602	hgsc.bcm.edu	hg19	17	76814798	76814798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	USP36	NM_025090	exon10	c.C974G	p.T325S	GAAAGGGTTAAGA	.	162.0	55.0	138.0	0.0	.	243	.	.	Atlas-SNP
CCBE1	147372	hgsc.bcm.edu	hg19	18	57363935	57363935	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CCBE1	NM_133459	exon2	c.C138T	p.I46I	TGAGCAGATTTCT	.	115.0	34.0	113.0	0.0	.	59	.	.	Atlas-SNP
CEBPA	1050	hgsc.bcm.edu	hg19	19	33792919	33792919	+	Silent	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	CEBPA,NS,haematopoietic_neoplasm,0,2	CEBPA	NM_004364	exon1	c.G402A	p.A134A	GGCGGCCGCGCAG	.	14.0	9.0	4.0	1.0	.	986	.	.	Atlas-SNP
HAMP	57817	hgsc.bcm.edu	hg19	19	35775694	35775694	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	HAMP	NM_021175	exon2	c.G93A	p.T31T	ACAGACGGGACAA	.	113.0	41.0	74.0	0.0	.	14	.	.	Atlas-SNP
ARHGAP33	115703	hgsc.bcm.edu	hg19	19	36273524	36273524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ARHGAP33	NM_052948	exon14	c.A1256G	p.E419G	GGGAGGAGGAGCG	.	53.0	20.0	38.0	0.0	.	102	.	.	Atlas-SNP
PRX	57716	hgsc.bcm.edu	hg19	19	40902988	40902988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRX	NM_181882	exon7	c.C1271T	p.S424F	CCAAGGGAGGGCA	.	139.0	52.0	85.0	0.0	.	151	.	.	Atlas-SNP
CYP2A7	1549	hgsc.bcm.edu	hg19	19	41386034	41386034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CYP2A7	NM_000764	exon4	c.C609A	p.S203R	CATCATGCTCAGC	.	108.0	46.0	74.0	0.0	.	71	.	.	Atlas-SNP
IGFL4	444882	hgsc.bcm.edu	hg19	19	46543655	46543655	+	Silent	SNP	G	G	A	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	IGFL4	NM_001002923	exon3	c.C90T	p.C30C	TGGCTGGCATAGC	.	101.0	45.0	65.0	0.0	.	13	.	.	Atlas-SNP
NCOA6	23054	hgsc.bcm.edu	hg19	20	33329069	33329069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	NCOA6	NM_014071	exon11	c.C4991A	p.S1664Y	ATTGAGGATGAAT	.	113.0	31.0	82.0	0.0	.	219	.	.	Atlas-SNP
BID	637	hgsc.bcm.edu	hg19	22	18256445	18256445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	BID	NM_197966	exon1	c.G11A	p.G4D	CCAGCACCGCTGC	.	31.0	24.0	72.0	0.0	.	18	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26422950	26422950	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	MYO18B	NM_032608	exon43	c.C7010G	p.T2337R	GGGGCACAACCCT	.	34.0	22.0	23.0	0.0	.	322	.	.	Atlas-SNP
PRKX	5613	hgsc.bcm.edu	hg19	X	3533926	3533926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.C881A	p.A294E	TCATTCGCCCCGT	.	39.0	4.0	112.0	0.0	.	29	.	.	Atlas-SNP
ND2	0	hgsc.bcm.edu	hg19	MT	5329	5329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	.	ENST00000361453	exon1	c.T860C	p.L287P	TCACCCTCCTTAA	.	53.0	4.0	43.0	0.0	.	.	.	.	Atlas-SNP
ILDR1	286676	hgsc.bcm.edu	hg19	3	121712300	121712300	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	ILDR1	NM_001199799	exon7	c.1297delC	p.R433fs	.	.	109.0	47.0	66.0	0.0	.	120	.	.	Atlas-Indel,Pindel
TJP1	7082	hgsc.bcm.edu	hg19	15	30000996	30000997	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	TJP1	NM_003257	exon25	c.4617_4618del	p.1539_1540del	.	.	288.0	107.0	187.0	0.0	.	140	.	.	Atlas-Indel,Pindel
CLK3	1198	hgsc.bcm.edu	hg19	15	74919883	74919895	+	Frame_Shift_Del	DEL	TGTGAGGAGAAGT	TGTGAGGAGAAGT	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	TGTGAGGAGAAGT	TGTGAGGAGAAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CLK3	NM_001130028	exon9	c.1359_1371del	p.453_457del	.	.	105.0	38.0	83.0	0.0	.	78	.	.	Atlas-Indel,Pindel
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120589173	120589174	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4085_4086del	p.1362_1362del	.	.	66.0	22.0	63.0	0.0	.	207	.	.	Atlas-INDEL
RELN	5649	hgsc.bcm.edu	hg19	7	103198496	103198496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	RELN	NM_173054	exon37	c.5531delA	p.E1844fs	.	.	284.0	105.0	191.0	0.0	.	593	.	.	Atlas-Indel,Pindel
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120589170	120589171	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4088_4089del	p.1363_1363del	.	.	69.0	22.0	65.0	0.0	.	207	.	.	Atlas-INDEL
PRKX	5613	hgsc.bcm.edu	hg19	X	3533925	3533925	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.883delA	p.N295fs	.	.	141.0	102.0	114.0	0.0	.	29	.	.	Atlas-INDEL
PRKX	5613	hgsc.bcm.edu	hg19	X	3533930	3533930	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.878delG	p.G293fs	.	.	144.0	37.0	112.0	0.0	.	29	.	.	Pindel
PRKX	5613	hgsc.bcm.edu	hg19	X	3533925	3533926	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	PRKX	NM_005044	exon7	c.882_883del	p.294_295del	.	.	143.0	17.0	113.0	0.0	.	29	.	.	Pindel
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120589170	120589174	+	Frame_Shift_Del	DEL	AAGCA	AAGCA	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	AAGCA	AAGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	GCN1L1	NM_006836	exon34	c.4085_4089del	p.1362_1363del	.	.	68.0	22.0	65.0	0.0	.	207	.	.	Pindel
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48653551	48653551	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-T1-A6J8-01A-11D-A32G-10	TCGA-T1-A6J8-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a537d6e4-82a8-4627-a88b-5173d666e2f1	b3cc3039-470f-4d68-9bd1-f2fb51d0d468	.	CACNA1G	NM_001256360	exon8	c.1787delG	p.S596fs	.	.	111.0	36.0	79.0	0.0	.	659	.	.	Pindel
