Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HIVEP3	59269	hgsc.bcm.edu	hg19	1	42041241	42041241	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	HIVEP3	NM_024503	exon5	c.G5181A	p.P1727P	CCTCGCCGGCTCC	.	27.0	15.0	64.0	0.0	.	235	.	.	Atlas-SNP
DMRTA2	63950	hgsc.bcm.edu	hg19	1	50886867	50886867	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DMRTA2	NM_032110	exon2	c.G342C	p.A114A	GCGCAGCGCCACC	.	30.0	14.0	31.0	0.0	.	17	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	63001217	63001217	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DOCK7	NM_001271999	exon29	c.G3558A	p.L1186L	TCCTGCCAAATAA	.	120.0	54.0	126.0	0.0	.	184	.	.	Atlas-SNP
C1orf51	148523	hgsc.bcm.edu	hg19	1	150255801	150255801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	C1orf51	NM_144697	exon1	c.C124A	p.H42N	GGGGCCCATGGGC	.	191.0	20.0	162.0	0.0	.	35	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158637739	158637739	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SPTA1	NM_003126	exon15	c.G1947A	p.E649E	ACCACCCTCAATC	.	106.0	72.0	79.0	0.0	.	720	.	.	Atlas-SNP
COPA	1314	hgsc.bcm.edu	hg19	1	160264344	160264344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	COPA	NM_001098398	exon25	c.C2633T	p.A878V	CCAAGAGCATCAT	.	234.0	133.0	212.0	0.0	.	181	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207651318	207651318	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CR2	NM_001006658	exon16	c.T2991A	p.T997T	TGTAACTCTGGAG	.	163.0	40.0	196.0	0.0	.	164	.	.	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133554289	133554289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NCKAP5	NM_207481	exon12	c.G821A	p.R274H	AAGAGACGTGAGT	.	48.0	10.0	62.0	0.0	.	322	.	.	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	hg19	2	133721442	133721442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NCKAP5	NM_207481	exon8	c.G430A	p.E144K	GCTTTTCCTGAAG	.	50.0	32.0	64.0	0.0	.	322	.	.	Atlas-SNP
CFLAR	8837	hgsc.bcm.edu	hg19	2	201994647	201994647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CFLAR	NM_001202516	exon2	c.T59C	p.M20T	AGGAGATGCTGCT	.	121.0	73.0	122.0	0.0	.	37	.	.	Atlas-SNP
KCNE4	23704	hgsc.bcm.edu	hg19	2	223917618	223917618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	KCNE4	NM_080671	exon2	c.C223T	p.R75C	GAGTCCCGTGCGG	.	41.0	32.0	46.0	0.0	.	21	.	.	Atlas-SNP
CUL3	8452	hgsc.bcm.edu	hg19	2	225367700	225367700	+	Silent	SNP	T	T	C	rs371616108		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CUL3	NM_001257198	exon10	c.A1485G	p.Q495Q	TAGATGTTGCCTG	.	61.0	11.0	94.0	0.0	.	96	.	.	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	hg19	3	443359	443359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CHL1	NM_006614	exon27	c.G3436A	p.D1146N	GTAAAAGATGAAA	.	57.0	16.0	85.0	0.0	.	242	.	.	Atlas-SNP
CASR	846	hgsc.bcm.edu	hg19	3	121981009	121981009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CASR	NM_001178065	exon4	c.G1127A	p.G376D	TGAGAGGTCACGA	.	104.0	47.0	139.0	0.0	.	190	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142232443	142232443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ATR	NM_001184	exon26	c.G4541T	p.C1514F	ATGCTACAGCAGG	.	209.0	65.0	297.0	0.0	.	285	.	.	Atlas-SNP
FRYL	285527	hgsc.bcm.edu	hg19	4	48512111	48512111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	FRYL,NS,carcinoma,0,1	FRYL	NM_015030	exon59	c.G8359A	p.D2787N	ATGTATCCAGGTG	.	58.0	25.0	70.0	0.0	.	242	.	.	Atlas-SNP
TRIM60	166655	hgsc.bcm.edu	hg19	4	165962559	165962559	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TRIM60	NM_001258025	exon4	c.A1335T	p.T445T	TTTCACAGAAGCC	.	82.0	20.0	84.0	0.0	.	73	.	.	Atlas-SNP
PDE8B	8622	hgsc.bcm.edu	hg19	5	76633096	76633096	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PDE8B	NM_001029852	exon6	c.G753C	p.L251L	TGAACTGATTCAA	.	130.0	18.0	162.0	0.0	.	103	.	.	Atlas-SNP
DMGDH	29958	hgsc.bcm.edu	hg19	5	78320120	78320120	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DMGDH	NM_013391	exon14	c.C2224T	p.L742L	ATTCCAGTCCAGC	.	239.0	88.0	292.0	0.0	.	88	.	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	hg19	5	140181914	140181914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	PCDHA3_ENST00000522353,colon,carcinoma,0,2	PCDHA3	NM_031497	exon1	c.G1132A	p.D378N	GACCGCGACTCAG	.	81.0	10.0	116.0	0.0	.	396	.	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178562943	178562943	+	Silent	SNP	G	G	A	rs370799965		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	ADAMTS2,colon,carcinoma,0,3	ADAMTS2	NM_014244	exon13	c.C2052T	p.D684D	GAAGGCGTCCTTG	.	94.0	47.0	108.0	1.0	.	190	.	.	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	hg19	6	26056402	26056402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	HIST1H1C,right_upper_lobe,carcinoma,0,1	HIST1H1C	NM_005319	exon1	c.G255C	p.K85N	CAGGCTCTTGAGA	.	127.0	15.0	87.0	0.0	.	80	.	.	Atlas-SNP
ZKSCAN3	80317	hgsc.bcm.edu	hg19	6	28333341	28333341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZKSCAN3	NM_024493	exon6	c.G896A	p.G299D	AGGAGGGCAGGCT	.	148.0	56.0	103.0	0.0	.	50	.	.	Atlas-SNP
MOCS1	4337	hgsc.bcm.edu	hg19	6	39895145	39895145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MOCS1	NM_005943	exon1	c.C173T	p.S58F	AAGGCGGAGAAGG	.	49.0	20.0	56.0	0.0	.	87	.	.	Atlas-SNP
TFAP2D	83741	hgsc.bcm.edu	hg19	6	50683121	50683121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TFAP2D	NM_172238	exon2	c.C332T	p.T111I	AGCCCACCGACTT	.	91.0	55.0	113.0	0.0	.	144	.	.	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	hg19	6	165827145	165827145	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PDE10A	NM_001130690	exon13	c.G1122A	p.T374T	GTTCCGCGTGGTG	.	90.0	57.0	125.0	0.0	.	154	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20738174	20738174	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ABCB5	NM_001163941	exon17	c.2154+1G>A	.	ATAACCGTAAGTA	.	65.0	16.0	81.0	0.0	.	357	.	.	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30705184	30705184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TEX15	NM_031271	exon1	c.G1350T	p.R450S	CTGACCCCTATCT	.	64.0	47.0	101.0	0.0	.	350	.	.	Atlas-SNP
TMEM246	84302	hgsc.bcm.edu	hg19	9	104238798	104238798	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	.	NM_032342	exon2	c.T577G	p.Y193D	GGCAATAGACATA	.	81.0	19.0	94.0	0.0	.	.	.	.	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	hg19	10	85994095	85994095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	LRIT1	NM_015613	exon3	c.A629G	p.Y210C	AGGTCATAGAGTC	.	168.0	46.0	163.0	0.0	.	73	.	.	Atlas-SNP
GLUD1	2746	hgsc.bcm.edu	hg19	10	88818994	88818994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GLUD1	NM_005271	exon10	c.T1315C	p.Y439H	CAAAGTAAGATAC	.	141.0	15.0	165.0	0.0	.	30	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106976760	106976760	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SORCS3	NM_014978	exon19	c.T2614G	p.F872V	GCAAACTTCAGCC	.	104.0	19.0	82.0	0.0	.	282	.	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	hg19	10	108412294	108412294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SORCS1	NM_001206572	exon18	c.C2321T	p.S774F	TTATTGGAAACCA	.	100.0	49.0	84.0	0.0	.	534	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	hg19	10	127797193	127797193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	ADAM12_ENST00000368679,NS,carcinoma,0,3	ADAM12	NM_021641	exon8	c.G719A	p.R240Q	ATTAATCGCTGCT	.	112.0	12.0	122.0	0.0	.	388	.	.	Atlas-SNP
ZBED5	58486	hgsc.bcm.edu	hg19	11	10874768	10874768	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZBED5	NM_021211	exon3	c.A1725G	p.R575R	TGGATTTCTAACC	.	41.0	14.0	87.0	0.0	.	50	.	.	Atlas-SNP
BDNF	627	hgsc.bcm.edu	hg19	11	27679589	27679589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	BDNF	NM_001143810	exon3	c.G769C	p.G257R	GTTGGCCTTTTGA	.	63.0	18.0	95.0	0.0	.	63	.	.	Atlas-SNP
MRPL21	219927	hgsc.bcm.edu	hg19	11	68658837	68658837	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MRPL21	NM_181514	exon7	c.C580A	p.R194R	TTATCCGGAGGAC	.	47.0	12.0	88.0	0.0	.	13	.	.	Atlas-SNP
GRAMD1B	57476	hgsc.bcm.edu	hg19	11	123474218	123474218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GRAMD1B	NM_020716	exon8	c.G706A	p.V236M	GACTACGTGCCCC	.	59.0	11.0	101.0	0.0	.	122	.	.	Atlas-SNP
JAM3	83700	hgsc.bcm.edu	hg19	11	134014848	134014848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	JAM3,NS,carcinoma,-1,1	JAM3	NM_032801	exon5	c.C571T	p.R191C	AGATTTCGCAATT	.	71.0	22.0	200.0	0.0	.	41	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89401573	89401573	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ACAN	NM_001135	exon12	c.G5757A	p.S1919S	GCCCTCGGGAGCA	.	123.0	64.0	90.0	0.0	.	220	.	.	Atlas-SNP
NOL3	8996	hgsc.bcm.edu	hg19	16	67209000	67209000	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NOL3	NM_001185057	exon4	c.G660A	p.X220X	TGGATAGGACCTG	.	41.0	25.0	56.0	0.0	.	6	.	.	Atlas-SNP
MBTPS1	8720	hgsc.bcm.edu	hg19	16	84118638	84118638	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MBTPS1	NM_003791	exon10	c.G1236A	p.G412G	ACTGGTCCCTGAG	.	153.0	39.0	206.0	0.0	.	85	.	.	Atlas-SNP
CTU2	348180	hgsc.bcm.edu	hg19	16	88781068	88781068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CTU2	NM_001012759	exon12	c.G1275C	p.E425D	GACTGAGACCCGG	.	79.0	47.0	132.0	0.0	.	66	.	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	hg19	17	12905669	12905669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ELAC2	NM_018127	exon14	c.G1226A	p.G409D	GTGGGGCCCTCCT	.	91.0	50.0	78.0	0.0	.	48	.	.	Atlas-SNP
DRG2	1819	hgsc.bcm.edu	hg19	17	18003031	18003031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DRG2	NM_001388	exon5	c.T461C	p.V154A	GAGAGGTGCAGAG	.	153.0	65.0	101.0	0.0	.	27	.	.	Atlas-SNP
MYCBPAP	84073	hgsc.bcm.edu	hg19	17	48586029	48586029	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MYCBPAP	NM_032133	exon1	c.C123T	p.G41G	GCCGGGCGGCACC	.	242.0	39.0	158.0	0.0	.	135	.	.	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	hg19	17	57046925	57046925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PPM1E	NM_014906	exon4	c.C809T	p.A270V	ACTTTGCAGTGTT	.	175.0	27.0	141.0	0.0	.	97	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78319225	78319225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	RNF213_ENST00000411702,colon,carcinoma,0,2	RNF213	NM_001256071	exon29	c.G7090A	p.D2364N	AATGTCGACTTTG	.	82.0	31.0	67.0	1.0	.	766	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31319066	31319066	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ASXL3	NM_030632	exon11	c.G1698C	p.E566D	AGTAGAGACCAGT	.	89.0	17.0	104.0	0.0	.	405	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	8999473	8999473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MUC16	NM_024690	exon56	c.T40702C	p.Y13568H	CCCAGTATAGCTG	.	104.0	17.0	100.0	0.0	.	4315	.	.	Atlas-SNP
DOCK6	57572	hgsc.bcm.edu	hg19	19	11363512	11363512	+	Silent	SNP	C	C	A	rs370478141	alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DOCK6	NM_020812	exon3	c.G255T	p.L85L	CAGCAGCAGCTCC	.	97.0	16.0	100.0	0.0	.	104	.	.	Atlas-SNP
JUND	3727	hgsc.bcm.edu	hg19	19	18391859	18391859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	JUND	NM_005354	exon1	c.G436A	p.D146N	GTAAATCCTCCAG	.	43.0	9.0	16.0	0.0	.	6	.	.	Atlas-SNP
SUGP2	10147	hgsc.bcm.edu	hg19	19	19136612	19136612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	SUGP2	NM_014884	exon3	c.A545G	p.E182G	AAACACTCTTTCT	.	561.0	96.0	140.0	0.0	.	107	.	.	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	hg19	19	22499343	22499343	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZNF729	NM_001242680	exon4	c.C3124G	p.H1042D	ATAATTCATACTG	.	53.0	8.0	44.0	0.0	.	78	.	.	Atlas-SNP
ARHGAP33	115703	hgsc.bcm.edu	hg19	19	36278734	36278734	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ARHGAP33	NM_052948	exon21	c.C2784T	p.I928I	TGAGATCGGGGCA	.	638.0	30.0	225.0	0.0	.	102	.	.	Atlas-SNP
AKT2	208	hgsc.bcm.edu	hg19	19	40746009	40746009	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	AKT2	NM_001626	exon7	c.C582A	p.V194V	GTGAGCGACTTCA	.	158.0	123.0	90.0	0.0	.	53	.	.	Atlas-SNP
MIA	8190	hgsc.bcm.edu	hg19	19	41281480	41281480	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MIA	NM_001202553	exon2	c.C33T	p.I11I	TGTCATCATCTTG	.	122.0	74.0	62.0	0.0	.	16	.	.	Atlas-SNP
PVR	5817	hgsc.bcm.edu	hg19	19	45150523	45150523	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PVR	NM_001135769	exon2	c.G108C	p.Q36H	CACCCAGGTGCCC	.	83.0	12.0	67.0	0.0	.	23	.	.	Atlas-SNP
MYBPC2	4606	hgsc.bcm.edu	hg19	19	50957538	50957538	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	MYBPC2	NM_004533	exon18	c.G1926A	p.P642P	CCCCCCGGAGGCT	.	44.0	31.0	103.0	0.0	.	103	.	.	Atlas-SNP
HAO1	54363	hgsc.bcm.edu	hg19	20	7915180	7915180	+	Silent	SNP	C	C	A	rs200105698	bycluster;alternate_allele	TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	HAO1	NM_017545	exon2	c.G240T	p.T80T	CATGGCCGTAGCC	.	92.0	17.0	89.0	0.0	.	71	.	C|0.999;G|0.001	Atlas-SNP
DZANK1	55184	hgsc.bcm.edu	hg19	20	18393405	18393405	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	DZANK1	NM_001099407	exon13	c.C1317T	p.F439F	TGGGTAGAAGAGG	.	159.0	42.0	98.0	0.0	.	65	.	.	Atlas-SNP
NINL	22981	hgsc.bcm.edu	hg19	20	25434223	25434223	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NINL	NM_025176	exon24	c.C4013G	p.A1338G	AGGTGGGCGTTCT	.	115.0	26.0	126.0	0.0	.	148	.	.	Atlas-SNP
XKR7	343702	hgsc.bcm.edu	hg19	20	30584708	30584708	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	XKR7	NM_001011718	exon3	c.C1188T	p.A396A	GAACGCCGCGCTC	.	78.0	17.0	69.0	0.0	.	62	.	.	Atlas-SNP
ZNF334	55713	hgsc.bcm.edu	hg19	20	45130323	45130323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ZNF334	NM_018102	exon5	c.C1655G	p.T552S	CAGTAGGTTCTCC	.	77.0	15.0	60.0	0.0	.	101	.	.	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	hg19	20	46268408	46268408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	NCOA3	NM_181659	exon15	c.C2795G	p.P932R	TGGAACCTATGAA	.	161.0	46.0	102.0	0.0	.	156	.	.	Atlas-SNP
CRYZL1	9946	hgsc.bcm.edu	hg19	21	34994363	34994363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	CRYZL1	NM_145858	exon4	c.A156C	p.E52D	CTTCATTTCTGCC	.	313.0	119.0	387.0	0.0	.	16	.	.	Atlas-SNP
GGT5	2687	hgsc.bcm.edu	hg19	22	24628913	24628913	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GGT5	NM_001099781	exon4	c.C474G	p.P158P	CGCCCAGGGCAGG	.	78.0	36.0	84.0	0.0	.	61	.	.	Atlas-SNP
TCF20	6942	hgsc.bcm.edu	hg19	22	42610029	42610029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	TCF20	NM_181492	exon1	c.C1283G	p.P428R	GAATTAGGACTGG	.	111.0	26.0	119.0	0.0	.	164	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34149696	34149696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	FAM47A	NM_203408	exon1	c.C700T	p.H234Y	GGAGATGGGACAC	.	101.0	22.0	101.0	0.0	.	249	.	.	Atlas-SNP
GRIA3	2892	hgsc.bcm.edu	hg19	X	122598767	122598767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GRIA3	NM_000828	exon13	c.G2128A	p.E710K	TCAGCGGAGCCAT	.	233.0	104.0	317.0	0.0	.	386	.	.	Atlas-SNP
GPR50	9248	hgsc.bcm.edu	hg19	X	150348392	150348392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	GPR50	NM_004224	exon2	c.G337T	p.V113F	AGTGTGGTCGGCT	.	193.0	93.0	223.0	0.0	.	195	.	.	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	hg19	14	71514665	71514666	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	PCNX	NM_014982	exon22	c.4302_4303insT	p.L1434fs	.	.	74.0	13.0	63.0	0.0	.	198	.	.	Atlas-Indel,Pindel
OR11H1	81061	hgsc.bcm.edu	hg19	22	16448905	16448905	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	OR11H1	NM_001005239	exon1	c.901delA	p.N301fs	.	.	331.0	22.0	353.0	0.0	.	44	.	.	Atlas-INDEL
RYR2	6262	hgsc.bcm.edu	hg19	1	237540701	237540702	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	RYR2	NM_001035	exon8	c.542_543insCA	p.L181fs	.	.	87.0	18.0	74.0	0.0	.	1273	.	.	Atlas-Indel,Pindel
OR11H12	440153	hgsc.bcm.edu	hg19	14	19378493	19378493	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	OR11H12	NM_001013354	exon1	c.899delT	p.F300fs	.	.	265.0	19.0	326.0	0.0	.	58	.	.	Atlas-INDEL
ST6GALNAC3	256435	hgsc.bcm.edu	hg19	1	77093235	77093235	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	ST6GALNAC3	NM_152996	exon4	c.721delA	p.T241fs	.	.	30.0	11.0	30.0	0.0	.	71	.	.	Atlas-Indel,Pindel
RAB4B	53916	hgsc.bcm.edu	hg19	19	41286374	41286374	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MA-01A-11D-A33Q-10	TCGA-UB-A7MA-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	efb3b274-562e-4ba8-908d-6343e61e5ea8	ee2cfb72-22e3-4676-be79-889217d8dc2b	.	RAB4B	NM_016154	exon3	c.181delA	p.I61fs	.	.	331.0	111.0	131.0	0.0	.	26	.	.	Pindel
