Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TNFRSF4	7293	hgsc.bcm.edu	hg19	1	1146948	1146948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNFRSF4	NM_003327	exon7	c.T821A	p.L274Q	TTGGCCAGGGTGG	.	52.0	23.0	85.0	0.0	.	12	.	.	Atlas-SNP
KIAA1751	85452	hgsc.bcm.edu	hg19	1	1888169	1888169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1751	NM_001080484	exon17	c.A1906T	p.T636S	GAGACGTGGTCTC	.	100.0	47.0	133.0	0.0	.	92	.	.	Atlas-SNP
KIAA1751	85452	hgsc.bcm.edu	hg19	1	1900247	1900247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1751	NM_001080484	exon11	c.A1072G	p.R358G	GCTTTCTGAGCTT	.	43.0	21.0	51.0	0.0	.	92	.	.	Atlas-SNP
PLCH2	9651	hgsc.bcm.edu	hg19	1	2409915	2409915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCH2	NM_014638	exon2	c.T125C	p.V42A	GTCCAGTGGAGCG	.	41.0	23.0	54.0	0.0	.	131	.	.	Atlas-SNP
PRDM16	63976	hgsc.bcm.edu	hg19	1	3102902	3102902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM16	NM_022114	exon2	c.T251A	p.F84Y	CAGACTTCGAGCT	.	121.0	51.0	190.0	0.0	.	147	.	.	Atlas-SNP
PRDM16	63976	hgsc.bcm.edu	hg19	1	3319469	3319469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM16	NM_022114	exon6	c.T791A	p.L264Q	AGGGCCTGGCTGA	.	167.0	89.0	212.0	0.0	.	147	.	.	Atlas-SNP
CCDC27	148870	hgsc.bcm.edu	hg19	1	3680278	3680278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC27	NM_152492	exon8	c.G1330T	p.A444S	GTGATTGCGTCTT	.	177.0	24.0	278.0	0.0	.	79	.	.	Atlas-SNP
NPHP4	261734	hgsc.bcm.edu	hg19	1	5967225	5967225	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPHP4	NM_015102	exon13	c.A1561T	p.R521W	TAGGCCTGGCCAA	.	101.0	49.0	149.0	0.0	.	119	.	.	Atlas-SNP
TAS1R1	80835	hgsc.bcm.edu	hg19	1	6639185	6639185	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAS1R1	NM_138697	exon6	c.C2067T	p.A689A	AGCGGCCCAGCTG	.	92.0	62.0	113.0	0.0	.	76	.	.	Atlas-SNP
SLC45A1	50651	hgsc.bcm.edu	hg19	1	8390821	8390821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC45A1	NM_001080397	exon4	c.A1268T	p.E423V	GCAGAGAGGGTGC	.	73.0	23.0	98.0	0.0	.	85	.	.	Atlas-SNP
CLSTN1	22883	hgsc.bcm.edu	hg19	1	9795215	9795215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLSTN1	NM_001009566	exon14	c.C1901T	p.T634I	ATGCAGGTGGCCT	.	37.0	15.0	59.0	0.0	.	88	.	.	Atlas-SNP
UBE4B	10277	hgsc.bcm.edu	hg19	1	10221232	10221232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE4B	NM_001105562	exon23	c.T3086C	p.M1029T	TAAACATGTTGAT	.	123.0	50.0	120.0	0.0	.	233	.	.	Atlas-SNP
PTCHD2	57540	hgsc.bcm.edu	hg19	1	11589857	11589857	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTCHD2	NM_020780	exon15	c.T2943C	p.R981R	GGCCCGTCTCTCA	.	63.0	35.0	79.0	0.0	.	193	.	.	Atlas-SNP
MIIP	60672	hgsc.bcm.edu	hg19	1	12082339	12082339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIIP	NM_021933	exon3	c.A302T	p.Q101L	AATGCCAGCACCA	.	86.0	51.0	128.0	0.0	.	34	.	.	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	hg19	1	12567012	12567012	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VPS13D	NM_015378	exon69	c.A12900G	p.L4300L	TTTCCTAGAAGTC	.	105.0	37.0	130.0	0.0	.	316	.	.	Atlas-SNP
PRAMEF2	65122	hgsc.bcm.edu	hg19	1	12921328	12921328	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRAMEF2	NM_023014	exon4	c.G1119C	p.L373L	TGGCCTGAGCTGC	.	161.0	16.0	207.0	0.0	.	85	.	.	Atlas-SNP
PADI1	29943	hgsc.bcm.edu	hg19	1	17556654	17556654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PADI1	NM_013358	exon9	c.A1004T	p.K335M	ACTGCAAGCTGAC	.	50.0	15.0	56.0	0.0	.	77	.	.	Atlas-SNP
PAX7	5081	hgsc.bcm.edu	hg19	1	19071418	19071418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAX7	NM_001135254	exon9	c.T1513G	p.Y505D	CAGGCCTACTAGG	.	112.0	45.0	131.0	0.0	.	127	.	.	Atlas-SNP
KIF17	57576	hgsc.bcm.edu	hg19	1	21013989	21013989	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF17	NM_001122819	exon8	c.A1830G	p.L610L	CAGGCCTAGTAAC	.	62.0	29.0	65.0	0.0	.	130	.	.	Atlas-SNP
LDLRAD2	401944	hgsc.bcm.edu	hg19	1	22141096	22141096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LDLRAD2	NM_001013693	exon2	c.C291A	p.N97K	GCTCAACACCTCC	.	90.0	47.0	74.0	0.0	.	17	.	.	Atlas-SNP
HNRNPR	10236	hgsc.bcm.edu	hg19	1	23637344	23637344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	HNRPR,mouth,carcinoma,0,2	HNRNPR	NM_001102398	exon11	c.G1514T	p.R505I	CCTCCTCTTCCTC	.	50.0	14.0	45.0	0.0	.	56	.	.	Atlas-SNP
CNR2	1269	hgsc.bcm.edu	hg19	1	24201051	24201051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNR2	NM_001841	exon2	c.A1057G	p.R353G	GATCTCTGGAATC	.	58.0	22.0	50.0	0.0	.	78	.	.	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	hg19	1	24996026	24996026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM1	NM_005839	exon14	c.A2152G	p.T718A	CCAAGTACTAGGC	.	243.0	115.0	327.0	0.0	.	81	.	.	Atlas-SNP
ZDHHC18	84243	hgsc.bcm.edu	hg19	1	27177682	27177682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZDHHC18	NM_032283	exon6	c.A896T	p.H299L	GGTTTCACACGTA	.	95.0	38.0	111.0	0.0	.	20	.	.	Atlas-SNP
TMEM222	84065	hgsc.bcm.edu	hg19	1	27648780	27648780	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM222	NM_032125	exon1	c.A92T	p.E31V	CGGCCGAGACGGA	.	182.0	101.0	196.0	0.0	.	16	.	.	Atlas-SNP
RCC1	1104	hgsc.bcm.edu	hg19	1	28864505	28864505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RCC1	NM_001048194	exon11	c.A1345G	p.K449E	AAGGACAAAGAAC	.	37.0	14.0	66.0	0.0	.	61	.	.	Atlas-SNP
COL16A1	1307	hgsc.bcm.edu	hg19	1	32161363	32161363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL16A1	NM_001856	exon10	c.A944T	p.E315V	CTTACCTCATCGG	.	86.0	38.0	130.0	0.0	.	137	.	.	Atlas-SNP
LCK	3932	hgsc.bcm.edu	hg19	1	32742349	32742349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCK	NM_005356	exon9	c.A926T	p.Q309L	TCACCCAGGAGCC	.	45.0	31.0	60.0	0.0	.	124	.	.	Atlas-SNP
ADC	113451	hgsc.bcm.edu	hg19	1	33557811	33557811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADC	NM_052998	exon6	c.A440T	p.H147L	AGAGCCACCCCAG	.	166.0	69.0	219.0	0.0	.	38	.	.	Atlas-SNP
PHC2	1912	hgsc.bcm.edu	hg19	1	33836103	33836103	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHC2	NM_198040	exon4	c.T495A	p.A165A	CTGCTGAGCGATG	.	51.0	20.0	56.0	0.0	.	78	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34123600	34123600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD2	NM_052896	exon27	c.T4273A	p.C1425S	TCACACAGCTGAT	.	52.0	26.0	81.0	0.0	.	946	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34128580	34128580	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD2	NM_052896	exon26	c.A4045T	p.K1349X	GGTCCTTGGGCAG	.	96.0	56.0	136.0	0.0	.	946	.	.	Atlas-SNP
GJA4	2701	hgsc.bcm.edu	hg19	1	35259856	35259856	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GJA4	NM_002060	exon2	c.C42A	p.V14V	CCAGGTCCAGGAG	.	79.0	30.0	84.0	0.0	.	25	.	.	Atlas-SNP
AGO1	26523	hgsc.bcm.edu	hg19	1	36383941	36383941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_012199	exon17	c.A2182G	p.I728V	GGTAACATCCCAG	.	108.0	47.0	135.0	0.0	.	.	.	.	Atlas-SNP
TEKT2	27285	hgsc.bcm.edu	hg19	1	36551473	36551473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEKT2	NM_014466	exon4	c.A319T	p.N107Y	GCCAAGAACCTGC	.	115.0	43.0	154.0	0.0	.	32	.	.	Atlas-SNP
MTF1	4520	hgsc.bcm.edu	hg19	1	38288109	38288109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTF1	NM_005955	exon9	c.A1451G	p.E484G	AGAAACTCTTGAT	.	55.0	28.0	81.0	0.0	.	67	.	.	Atlas-SNP
COL9A2	1298	hgsc.bcm.edu	hg19	1	40769263	40769263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	COL9A2,NS,carcinoma,0,1	COL9A2	NM_001852	exon28	c.G1487A	p.G496D	CGAGGGCCGGGGG	.	41.0	20.0	36.0	0.0	.	63	.	.	Atlas-SNP
COL9A2	1298	hgsc.bcm.edu	hg19	1	40777173	40777173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A2	NM_001852	exon10	c.T518C	p.L173P	CTCACCAGGAAAT	.	46.0	20.0	65.0	0.0	.	63	.	.	Atlas-SNP
COL9A2	1298	hgsc.bcm.edu	hg19	1	40777786	40777786	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A2	NM_001852	exon9	c.364-2A>T	.	GGCCCCTGGGGAG	.	63.0	22.0	88.0	0.0	.	63	.	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	hg19	1	41990547	41990547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIVEP3	NM_024503	exon6	c.G5242A	p.G1748S	CGCGGCCTCGCAC	.	93.0	46.0	108.0	0.0	.	235	.	.	Atlas-SNP
SZT2	23334	hgsc.bcm.edu	hg19	1	43908181	43908181	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SZT2	NM_015284	exon57	c.G7872T	p.L2624L	TCGCCTGGTGCAG	.	67.0	28.0	66.0	0.0	.	383	.	.	Atlas-SNP
ERI3	79033	hgsc.bcm.edu	hg19	1	44713653	44713653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ERI3	NM_024066	exon8	c.G889T	p.G297C	TGAGGCCCTTGTT	.	64.0	29.0	74.0	0.0	.	39	.	.	Atlas-SNP
STIL	6491	hgsc.bcm.edu	hg19	1	47717102	47717102	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STIL	NM_001048166	exon17	c.A3573G	p.A1191A	CGTATCTGCGTTG	.	85.0	44.0	97.0	0.0	.	91	.	.	Atlas-SNP
SPATA6	54558	hgsc.bcm.edu	hg19	1	48764441	48764441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA6	NM_019073	exon13	c.A1411T	p.R471W	AGTTCCTGTACAT	.	79.0	23.0	111.0	0.0	.	45	.	.	Atlas-SNP
EPS15	2060	hgsc.bcm.edu	hg19	1	51864724	51864724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPS15	NM_001981	exon20	c.A2032G	p.N678D	TATTGTTGGCTGC	.	46.0	21.0	49.0	0.0	.	72	.	.	Atlas-SNP
MROH7	374977	hgsc.bcm.edu	hg19	1	55119680	55119680	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001039464	exon3	c.A1081T	p.K361X	GATGCCAAGGACA	.	95.0	53.0	121.0	0.0	.	.	.	.	Atlas-SNP
MROH7	374977	hgsc.bcm.edu	hg19	1	55174688	55174688	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001039464	exon23	c.G3669A	p.G1223G	TCAAGGGTCCCTG	.	46.0	28.0	76.0	0.0	.	.	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62456026	62456026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INADL	NM_176877	exon28	c.A3857T	p.E1286V	GAGATGAACTCTT	.	95.0	39.0	76.0	0.0	.	179	.	.	Atlas-SNP
KANK4	163782	hgsc.bcm.edu	hg19	1	62733992	62733992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KANK4	NM_181712	exon5	c.C2198T	p.P733L	TCCCCAGGCCCAC	.	56.0	25.0	73.0	0.0	.	135	.	.	Atlas-SNP
CACHD1	57685	hgsc.bcm.edu	hg19	1	65142576	65142576	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACHD1	NM_020925	exon22	c.2823-2A>G	.	CTGCACAGAAACC	.	202.0	90.0	197.0	0.0	.	125	.	.	Atlas-SNP
DNAJC6	9829	hgsc.bcm.edu	hg19	1	65852603	65852603	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC6	NM_001256864	exon8	c.A1104G	p.L368L	CCGGCTACAGGCT	.	118.0	47.0	122.0	0.0	.	104	.	.	Atlas-SNP
SGIP1	84251	hgsc.bcm.edu	hg19	1	67148048	67148048	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGIP1	NM_032291	exon15	c.C1311T	p.T437T	GACCACCAGTGGT	.	159.0	60.0	162.0	0.0	.	272	.	.	Atlas-SNP
IL23R	149233	hgsc.bcm.edu	hg19	1	67666515	67666515	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL23R	NM_144701	exon5	c.T587A	p.V196D	TTTGGGTCCAAGC	.	196.0	101.0	203.0	0.0	.	52	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70502271	70502271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	LRRC7,NS,carcinoma,0,1	LRRC7	NM_020794	exon18	c.C2138T	p.A713V	CAACAGCTAAAGA	.	132.0	61.0	115.0	1.0	.	400	.	.	Atlas-SNP
LRRC40	55631	hgsc.bcm.edu	hg19	1	70616864	70616864	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC40	NM_017768	exon13	c.A1464C	p.P488P	TTCTTCTGGCAAA	.	240.0	97.0	244.0	0.0	.	66	.	.	Atlas-SNP
PTGER3	5733	hgsc.bcm.edu	hg19	1	71418661	71418661	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTGER3	NM_198718	exon4	c.A1186C	p.R396R	CTTCTCTGTTCAG	.	42.0	13.0	55.0	0.0	.	246	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	hg19	1	75065565	75065565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1orf173	NM_001002912	exon11	c.A1540G	p.N514D	CTTCATTAGATTT	.	110.0	54.0	123.0	0.0	.	380	.	.	Atlas-SNP
LPAR3	23566	hgsc.bcm.edu	hg19	1	85331282	85331282	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPAR3	NM_012152	exon2	c.T522G	p.S174S	GCAGGCAGAGATG	.	98.0	39.0	99.0	0.0	.	53	.	.	Atlas-SNP
SYDE2	84144	hgsc.bcm.edu	hg19	1	85647970	85647970	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYDE2	NM_032184	exon3	c.A2355G	p.R785R	AAGACCTCTAGGT	.	181.0	10.0	209.0	0.0	.	135	.	.	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	hg19	1	86961307	86961307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLCA1	NM_001285	exon12	c.G2062T	p.V688L	CGGAGAGTGATAC	.	87.0	43.0	95.0	0.0	.	109	.	.	Atlas-SNP
ZNF644	84146	hgsc.bcm.edu	hg19	1	91403139	91403139	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon4	c.A3591T	p.T1197T	TCTTGCTGTCTGA	.	71.0	27.0	109.0	0.0	.	120	.	.	Atlas-SNP
ZNF644	84146	hgsc.bcm.edu	hg19	1	91405810	91405810	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon3	c.A1101T	p.P367P	CTTATCTGGGTTA	.	90.0	32.0	86.0	0.0	.	120	.	.	Atlas-SNP
ZNF644	84146	hgsc.bcm.edu	hg19	1	91406111	91406111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon3	c.A800T	p.Q267L	AGAAATTGAATGA	.	79.0	42.0	91.0	0.0	.	120	.	.	Atlas-SNP
HFM1	164045	hgsc.bcm.edu	hg19	1	91859872	91859872	+	Missense_Mutation	SNP	T	T	A	rs201897123	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HFM1	NM_001017975	exon4	c.A272T	p.Q91L	GCAAACTGGAATT	.	170.0	71.0	173.0	0.0	.	188	.	T|0.999;C|0.001	Atlas-SNP
BRDT	676	hgsc.bcm.edu	hg19	1	92442752	92442752	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRDT	NM_001242806	exon6	c.T783C	p.S261S	AGATTCTCAGCAA	.	202.0	78.0	238.0	0.0	.	133	.	.	Atlas-SNP
VCAM1	7412	hgsc.bcm.edu	hg19	1	101186271	101186271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VCAM1	NM_001078	exon2	c.A304T	p.R102W	GAATCTAGGAAAT	.	111.0	52.0	112.0	0.0	.	111	.	.	Atlas-SNP
OLFM3	118427	hgsc.bcm.edu	hg19	1	102270334	102270334	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OLFM3	NM_058170	exon6	c.T837C	p.N279N	TGAGCCATTGTAG	.	90.0	45.0	104.0	0.0	.	178	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103461545	103461545	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	COL11A1_ENST00000370096,NS,carcinoma,0,2	COL11A1	NM_080629	exon27	c.G2331A	p.K777K	CGTTACCTTTACT	.	153.0	64.0	181.0	0.0	.	972	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103484377	103484377	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL11A1	NM_080629	exon10	c.T1383A	p.P461P	TACTGCAGGTCCT	.	506.0	252.0	547.0	1.0	.	972	.	.	Atlas-SNP
FAM102B	284611	hgsc.bcm.edu	hg19	1	109171192	109171192	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM102B	NM_001010883	exon8	c.A828T	p.S276S	AGCTTCAGAAAAA	.	128.0	65.0	129.0	0.0	.	49	.	.	Atlas-SNP
STXBP3	6814	hgsc.bcm.edu	hg19	1	109321954	109321954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STXBP3	NM_007269	exon9	c.C731A	p.P244H	TTGATCCTGTGTC	.	96.0	42.0	90.0	0.0	.	44	.	.	Atlas-SNP
WDR47	22911	hgsc.bcm.edu	hg19	1	109553760	109553760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR47	NM_001142550	exon5	c.A929G	p.Q310R	GCTGATTGAGGTC	.	77.0	29.0	101.0	0.0	.	56	.	.	Atlas-SNP
PSRC1	84722	hgsc.bcm.edu	hg19	1	109824547	109824547	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSRC1	NM_001032291	exon4	c.A213C	p.P71P	CTTCTCTGGACTG	.	114.0	43.0	136.0	0.0	.	12	.	.	Atlas-SNP
KCNA3	3738	hgsc.bcm.edu	hg19	1	111216504	111216504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA3	NM_002232	exon1	c.C928A	p.L310M	CCAGCAGTTCGAA	.	68.0	33.0	47.0	0.0	.	91	.	.	Atlas-SNP
AMPD1	270	hgsc.bcm.edu	hg19	1	115218238	115218238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AMPD1	NM_000036	exon12	c.A1691T	p.Q564L	CACTCCTGGGGCT	.	58.0	31.0	50.0	0.0	.	223	.	.	Atlas-SNP
CSDE1	7812	hgsc.bcm.edu	hg19	1	115275369	115275369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSDE1	NM_001242891	exon11	c.A1044T	p.K348N	CGTATCTTTGTCT	.	220.0	106.0	237.0	0.0	.	145	.	.	Atlas-SNP
NGF	4803	hgsc.bcm.edu	hg19	1	115829387	115829387	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NGF	NM_002506	exon3	c.A30T	p.T10T	AAAAGCTGTGATC	.	63.0	31.0	85.0	0.0	.	43	.	.	Atlas-SNP
CASQ2	845	hgsc.bcm.edu	hg19	1	116244009	116244009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CASQ2	NM_001232	exon11	c.T1053A	p.D351E	TGGAAGATCGTCA	.	97.0	39.0	105.0	0.0	.	54	.	.	Atlas-SNP
NHLH2	4808	hgsc.bcm.edu	hg19	1	116380638	116380638	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NHLH2	NM_001111061	exon2	c.T356A	p.L119Q	AGGCGCAGGATCT	.	50.0	19.0	46.0	0.0	.	8	.	.	Atlas-SNP
TTF2	8458	hgsc.bcm.edu	hg19	1	117618107	117618107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTF2	NM_003594	exon5	c.A901T	p.I301L	CCTAGCATACAGG	.	162.0	80.0	157.0	0.0	.	92	.	.	Atlas-SNP
RNF115	27246	hgsc.bcm.edu	hg19	1	145663367	145663367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF115	NM_014455	exon4	c.G428C	p.G143A	TTGAAGGGTGAGT	.	125.0	43.0	77.0	0.0	.	27	.	.	Atlas-SNP
CHD1L	9557	hgsc.bcm.edu	hg19	1	146747893	146747893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHD1L	NM_004284	exon14	c.A1511T	p.Q504L	GAGCCCAGAAACC	.	129.0	102.0	76.0	0.0	.	72	.	.	Atlas-SNP
GJA8	2703	hgsc.bcm.edu	hg19	1	147380840	147380840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GJA8	NM_005267	exon2	c.A758T	p.H253L	CCCTCCACTCCAT	.	184.0	136.0	91.0	0.0	.	108	.	.	Atlas-SNP
HIST2H2AC	8338	hgsc.bcm.edu	hg19	1	149858769	149858769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIST2H2AC	NM_003517	exon1	c.G245C	p.R82P	TCCCTCGTCACCT	.	406.0	125.0	220.0	0.0	.	75	.	.	Atlas-SNP
ADAMTSL4	54507	hgsc.bcm.edu	hg19	1	150526448	150526448	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTSL4	NM_019032	exon6	c.C981A	p.R327R	GCCCCGCCTGGAG	.	102.0	27.0	44.0	0.0	.	101	.	.	Atlas-SNP
BNIPL	149428	hgsc.bcm.edu	hg19	1	151018276	151018276	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BNIPL	NM_138278	exon8	c.A855G	p.L285L	CAGGCTACGGAAA	.	153.0	54.0	68.0	0.0	.	45	.	.	Atlas-SNP
POGZ	23126	hgsc.bcm.edu	hg19	1	151403269	151403269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POGZ	NM_015100	exon4	c.A332G	p.Q111R	GGATTCTGGGTCA	.	128.0	47.0	61.0	0.0	.	211	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152286887	152286887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLG	NM_002016	exon3	c.A475G	p.K159E	TTTCTTTTTTTTC	.	111.0	80.0	58.0	0.0	.	900	.	.	Atlas-SNP
LCE2D	353141	hgsc.bcm.edu	hg19	1	152636872	152636872	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCE2D	NM_178430	exon2	c.T291C	p.S97S	ACCTTCTGGGGCC	.	137.0	25.0	73.0	0.0	.	26	.	.	Atlas-SNP
SPRR4	163778	hgsc.bcm.edu	hg19	1	152944426	152944426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPRR4	NM_173080	exon2	c.G60T	p.Q20H	CCAGCAGCAGCAA	.	282.0	224.0	148.0	0.0	.	8	.	.	Atlas-SNP
SPRR2F	6705	hgsc.bcm.edu	hg19	1	153085091	153085091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPRR2F	NM_001014450	exon2	c.A119G	p.K40R	GGACACTTTGATG	.	83.0	9.0	52.0	0.0	.	12	.	.	Atlas-SNP
NPR1	4881	hgsc.bcm.edu	hg19	1	153661567	153661567	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPR1	NM_000906	exon16	c.C2556T	p.I852I	CCAGATCCTGCCT	.	168.0	125.0	90.0	0.0	.	104	.	.	Atlas-SNP
AQP10	89872	hgsc.bcm.edu	hg19	1	154294415	154294415	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AQP10	NM_080429	exon2	c.A112T	p.T38S	CTCCTCACCCAAG	.	271.0	42.0	128.0	0.0	.	44	.	.	Atlas-SNP
ADAR	103	hgsc.bcm.edu	hg19	1	154573591	154573591	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAR	NM_001111	exon2	c.A1527G	p.L509L	ATATTCTAACAGC	.	204.0	65.0	83.0	0.0	.	113	.	.	Atlas-SNP
CLK2	1196	hgsc.bcm.edu	hg19	1	155234093	155234093	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLK2	NM_003993	exon12	c.1144-2A>T	.	TGGGTCTGGGAAA	.	345.0	239.0	175.0	1.0	.	55	.	.	Atlas-SNP
ASH1L	55870	hgsc.bcm.edu	hg19	1	155451023	155451023	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASH1L	NM_018489	exon3	c.A1638G	p.P546P	ACTGAATGGGGAT	.	133.0	26.0	54.0	0.0	.	279	.	.	Atlas-SNP
SYT11	23208	hgsc.bcm.edu	hg19	1	155838371	155838371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT11	NM_152280	exon2	c.A650G	p.K217R	TGCGGAAGACCCT	.	219.0	72.0	144.0	0.0	.	55	.	.	Atlas-SNP
BCAN	63827	hgsc.bcm.edu	hg19	1	156622305	156622305	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BCAN	NM_198427	exon8	c.A1563T	p.P521P	ATCACCACTTCCT	.	125.0	23.0	84.0	0.0	.	174	.	.	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	hg19	1	157488541	157488541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRL5	NM_031281	exon14	c.A2692T	p.T898S	GATAGGTGGGCTC	.	182.0	34.0	96.0	0.0	.	177	.	.	Atlas-SNP
FCRL5	83416	hgsc.bcm.edu	hg19	1	157514159	157514159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRL5	NM_031281	exon5	c.A737T	p.Q246L	GTAATCTGGAAAT	.	274.0	198.0	145.0	1.0	.	177	.	.	Atlas-SNP
CD5L	922	hgsc.bcm.edu	hg19	1	157803106	157803106	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD5L	NM_005894	exon5	c.T915G	p.V305V	GCGGCCAACCCCA	.	250.0	174.0	146.0	0.0	.	112	.	.	Atlas-SNP
CD5L	922	hgsc.bcm.edu	hg19	1	157803162	157803162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD5L	NM_005894	exon5	c.T859A	p.C287S	TCCCACAGCCCAG	.	227.0	160.0	144.0	0.0	.	112	.	.	Atlas-SNP
OR10Z1	128368	hgsc.bcm.edu	hg19	1	158576643	158576643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10Z1	NM_001004478	exon1	c.A415T	p.T139S	AATCCTACCCTCT	.	169.0	40.0	107.0	0.0	.	99	.	.	Atlas-SNP
OR10Z1	128368	hgsc.bcm.edu	hg19	1	158576656	158576656	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10Z1	NM_001004478	exon1	c.A428T	p.Q143L	GTGCCCAGCTGGT	.	179.0	138.0	107.0	0.0	.	99	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158627334	158627334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPTA1	NM_003126	exon19	c.C2738T	p.T913I	ATCCATGTTTCTG	.	162.0	41.0	85.0	0.0	.	720	.	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	hg19	1	158669603	158669603	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6K2	NM_001005279	exon1	c.A840G	p.A280A	CAAAACTGCAAAG	.	408.0	93.0	228.0	0.0	.	104	.	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	hg19	1	158669632	158669632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6K2	NM_001005279	exon1	c.T811A	p.W271R	TATCCCAGAACAA	.	415.0	167.0	218.0	0.0	.	104	.	.	Atlas-SNP
AIM2	9447	hgsc.bcm.edu	hg19	1	159038418	159038418	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AIM2	NM_004833	exon3	c.A336T	p.A112A	GATGGCTGCAGAT	.	162.0	108.0	84.0	0.0	.	70	.	.	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	hg19	1	160097597	160097597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP1A2	NM_000702	exon8	c.T1004A	p.L335Q	GGCTTCTGGCCAC	.	107.0	77.0	56.0	0.0	.	167	.	.	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	hg19	1	160144010	160144010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP1A4	NM_144699	exon14	c.C2101A	p.P701T	ACCTCCCCTCAGC	.	329.0	236.0	196.0	0.0	.	167	.	.	Atlas-SNP
SLAMF1	6504	hgsc.bcm.edu	hg19	1	160582368	160582368	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLAMF1	NM_003037	exon6	c.T867C	p.P289P	CTGAAGAGGCTAC	.	101.0	67.0	40.0	0.0	.	74	.	.	Atlas-SNP
LY9	4063	hgsc.bcm.edu	hg19	1	160784286	160784286	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LY9	NM_001261457	exon4	c.T807G	p.L269L	GCCACTTGCACTC	.	190.0	138.0	122.0	0.0	.	115	.	.	Atlas-SNP
PVRL4	81607	hgsc.bcm.edu	hg19	1	161044159	161044159	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PVRL4	NM_030916	exon6	c.C1005A	p.P335P	TTCCTGGGGGTCT	.	182.0	38.0	112.0	0.0	.	48	.	.	Atlas-SNP
FCRLA	84824	hgsc.bcm.edu	hg19	1	161682966	161682966	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRLA	NM_001184866	exon6	c.T945A	p.P315P	TGGGCCTCTGCCT	.	161.0	118.0	91.0	0.0	.	101	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167096996	167096996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DUSP27	NM_001080426	exon5	c.A2628T	p.E876D	CAAGGAAGATGAG	.	100.0	73.0	60.0	0.0	.	235	.	.	Atlas-SNP
F5	2153	hgsc.bcm.edu	hg19	1	169521814	169521814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	F5	NM_000130	exon8	c.A1277T	p.Q426L	CTGACCTGGGCTC	.	184.0	138.0	116.0	0.0	.	301	.	.	Atlas-SNP
SELP	6403	hgsc.bcm.edu	hg19	1	169586539	169586539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SELP	NM_003005	exon3	c.A208T	p.I70F	TCTGGATGGCCAC	.	210.0	34.0	107.0	0.0	.	132	.	.	Atlas-SNP
FMO2	2327	hgsc.bcm.edu	hg19	1	171174726	171174726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FMO2	NM_001460	exon7	c.T1136C	p.F379S	CCATTTTCCCAAC	.	116.0	80.0	76.0	0.0	.	66	.	.	Atlas-SNP
PRRC2C	23215	hgsc.bcm.edu	hg19	1	171510057	171510057	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_015172	exon16	c.A3446T	p.E1149V	TTATAGAGAGGCC	.	338.0	74.0	186.0	0.0	.	.	.	.	Atlas-SNP
MYOC	4653	hgsc.bcm.edu	hg19	1	171605647	171605647	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYOC	NM_000261	exon3	c.C933G	p.Y311X	AGAAGGGTAGCCC	.	138.0	22.0	71.0	0.0	.	69	.	.	Atlas-SNP
METTL13	51603	hgsc.bcm.edu	hg19	1	171759656	171759656	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	METTL13	NM_015935	exon5	c.A1374T	p.A458A	CCCTGCAGCCCCG	.	500.0	336.0	319.0	0.0	.	67	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	177001594	177001594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASTN1	NM_004319	exon3	c.C863T	p.P288L	CCACCTGGTGTGA	.	68.0	23.0	32.0	0.0	.	314	.	.	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177226313	177226313	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM5B	NM_021165	exon4	c.A462G	p.G154G	CATAGGAGAAGAG	.	309.0	234.0	191.0	0.0	.	191	.	.	Atlas-SNP
SEC16B	89866	hgsc.bcm.edu	hg19	1	177906378	177906378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC16B	NM_033127	exon19	c.A2474G	p.E825G	ATTTCCTCCCAGA	.	96.0	65.0	53.0	0.0	.	92	.	.	Atlas-SNP
STX6	10228	hgsc.bcm.edu	hg19	1	180953835	180953835	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STX6	NM_005819	exon7	c.A669G	p.A223A	TACTTTTGCAAGT	.	114.0	74.0	73.0	0.0	.	21	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181680158	181680158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1E	NM_001205293	exon8	c.A1124T	p.Q375L	AGCAGCAGATTGA	.	75.0	29.0	43.0	0.0	.	778	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181767600	181767600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1E	NM_001205293	exon48	c.A6572T	p.E2191V	GCGAGGAGGGCTC	.	82.0	22.0	54.0	0.0	.	778	.	.	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	hg19	1	183102629	183102629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMC1	NM_002293	exon22	c.G3793T	p.V1265L	AAAGCTGTGGAGA	.	165.0	45.0	86.0	0.0	.	176	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185902889	185902889	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMCN1	NM_031935	exon11	c.A1761T	p.G587G	TGCTGGAGAGTAT	.	134.0	31.0	72.0	0.0	.	797	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186092186	186092186	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMCN1	NM_031935	exon81	c.A12333G	p.T4111T	CATTACATGGCAT	.	131.0	44.0	63.0	0.0	.	797	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186291450	186291450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon45	c.A6461T	p.H2154L	ACTTACTGAATTG	.	459.0	98.0	252.0	0.0	.	441	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186324666	186324666	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon17	c.A2047C	p.K683Q	CTTTTTTGTAGTT	.	202.0	10.0	93.0	0.0	.	441	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186327705	186327705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon13	c.G1467C	p.M489I	TATTTCCATTCTT	.	120.0	79.0	78.0	0.0	.	441	.	.	Atlas-SNP
PTGS2	5743	hgsc.bcm.edu	hg19	1	186645249	186645249	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTGS2	NM_000963	exon8	c.A1038G	p.K346K	GTCAAATTTCAGT	.	214.0	147.0	129.0	0.0	.	144	.	.	Atlas-SNP
UCHL5	51377	hgsc.bcm.edu	hg19	1	192993077	192993077	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	UCHL5,NS,carcinoma,0,1	UCHL5	NM_015984	exon9	c.630-1G>T	.	CTGTACCTAGAAG	.	132.0	45.0	52.0	0.0	.	41	.	.	Atlas-SNP
TROVE2	6738	hgsc.bcm.edu	hg19	1	193045014	193045014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TROVE2	NM_004600	exon3	c.A645G	p.E215E	TAAAGAAAAAGCA	.	330.0	104.0	161.0	0.0	.	50	.	.	Atlas-SNP
NEK7	140609	hgsc.bcm.edu	hg19	1	198233311	198233311	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEK7	NM_133494	exon5	c.A318G	p.E106E	TAATGAACTAAAC	.	194.0	158.0	362.0	0.0	.	42	.	.	Atlas-SNP
C1orf106	55765	hgsc.bcm.edu	hg19	1	200877954	200877954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1orf106	NM_018265	exon7	c.C968T	p.P323L	CAGGACCTGAGGC	.	157.0	13.0	291.0	0.0	.	59	.	.	Atlas-SNP
LGR6	59352	hgsc.bcm.edu	hg19	1	202287908	202287908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LGR6	NM_001017403	exon18	c.T2477A	p.L826Q	CACTGCTGTACCT	.	16.0	15.0	50.0	0.0	.	102	.	.	Atlas-SNP
SLC26A9	115019	hgsc.bcm.edu	hg19	1	205884091	205884091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A9	NM_134325	exon22	c.T2593C	p.Y865H	GCTTGTACAGCAG	.	40.0	35.0	110.0	0.0	.	176	.	.	Atlas-SNP
SLC26A9	115019	hgsc.bcm.edu	hg19	1	205897161	205897161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A9	NM_134325	exon9	c.T970A	p.S324T	CAGGCGACACCGG	.	32.0	28.0	58.0	0.0	.	176	.	.	Atlas-SNP
CR1	1378	hgsc.bcm.edu	hg19	1	207741308	207741308	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CR1	NM_000651	exon25	c.A4092G	p.G1364G	CATTGGAGAGAGC	.	143.0	108.0	258.0	0.0	.	354	.	.	Atlas-SNP
RCOR3	55758	hgsc.bcm.edu	hg19	1	211447593	211447593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RCOR3	NM_001136223	exon4	c.A343G	p.N115D	GGCTACAATGTGG	.	201.0	158.0	417.0	0.0	.	51	.	.	Atlas-SNP
RPS6KC1	26750	hgsc.bcm.edu	hg19	1	213303010	213303010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPS6KC1	NM_012424	exon6	c.G613T	p.G205W	GCACTAGGGGCTG	.	39.0	27.0	89.0	0.0	.	114	.	.	Atlas-SNP
CENPF	1063	hgsc.bcm.edu	hg19	1	214818921	214818921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CENPF	NM_016343	exon13	c.A6008T	p.Q2003L	GCATTCAGGTGGC	.	73.0	60.0	134.0	0.0	.	321	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216373134	216373134	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USH2A	NM_007123	exon17	c.T3646A	p.Y1216N	AATCGTACTTGGC	.	83.0	67.0	147.0	1.0	.	1168	.	.	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	hg19	1	226835068	226835068	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPKB	NM_002221	exon4	c.A2046T	p.A682A	GGCAGCTGCCTTG	.	17.0	15.0	44.0	0.0	.	158	.	.	Atlas-SNP
URB2	9816	hgsc.bcm.edu	hg19	1	229773082	229773082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	URB2	NM_014777	exon4	c.A2722T	p.S908C	CTGGACAGCCTCT	.	33.0	31.0	59.0	0.0	.	152	.	.	Atlas-SNP
SIPA1L2	57568	hgsc.bcm.edu	hg19	1	232577103	232577103	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIPA1L2	NM_020808	exon12	c.T3576A	p.G1192G	ATAGGAACCCAGG	.	20.0	20.0	32.0	0.0	.	218	.	.	Atlas-SNP
PCNXL2	80003	hgsc.bcm.edu	hg19	1	233353792	233353792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCNXL2	NM_014801	exon11	c.G2643T	p.Q881H	GGAGTACTGGCAG	.	79.0	69.0	153.0	0.0	.	204	.	.	Atlas-SNP
GGPS1	9453	hgsc.bcm.edu	hg19	1	235505654	235505654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GGPS1	NM_001037277	exon4	c.G470A	p.G157E	TGTTTGGATTAGC	.	55.0	46.0	114.0	0.0	.	23	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237872815	237872815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR2	NM_001035	exon70	c.A10178T	p.E3393V	AAGCAGAGGAGCT	.	36.0	25.0	68.0	0.0	.	1273	.	.	Atlas-SNP
SDCCAG8	10806	hgsc.bcm.edu	hg19	1	243433405	243433405	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SDCCAG8	NM_006642	exon2	c.68-2A>C	.	TCTTGCAGAACAT	.	30.0	27.0	69.0	0.0	.	73	.	.	Atlas-SNP
ZNF669	79862	hgsc.bcm.edu	hg19	1	247264199	247264199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF669	NM_024804	exon4	c.G872T	p.G291V	CAAGAACCGGAAA	.	27.0	20.0	72.0	0.0	.	46	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1667460	1667460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PXDN	NM_012293	exon12	c.A1484T	p.H495L	TGGTCGTGGAGGG	.	51.0	25.0	56.0	0.0	.	255	.	.	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	hg19	2	9668050	9668050	+	Missense_Mutation	SNP	T	T	G	rs34431503	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM17	NM_003183	exon5	c.A484C	p.K162Q	TTCTTTTGTCTTT	.	75.0	41.0	83.0	0.0	.	61	.	T|0.996;C|0.004	Atlas-SNP
ROCK2	9475	hgsc.bcm.edu	hg19	2	11375944	11375944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROCK2	NM_004850	exon5	c.G607A	p.D203N	TTGCATCCAGAGC	.	185.0	95.0	204.0	1.0	.	224	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15679482	15679482	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	NBAS,NS,adenocarcinoma,0,1	NBAS	NM_015909	exon8	c.380-2A>T	.	CGGAACTAGAACA	.	104.0	39.0	112.0	0.0	.	246	.	.	Atlas-SNP
GEN1	348654	hgsc.bcm.edu	hg19	2	17959314	17959314	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEN1	NM_182625	exon12	c.A1248T	p.I416I	TGAAATAGAATGG	.	290.0	145.0	276.0	0.0	.	79	.	.	Atlas-SNP
NT5C1B-RDH14	100526794	hgsc.bcm.edu	hg19	2	18736712	18736712	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001199103	exon9	c.A1698G	p.T566T	CAGATTTGTCCGT	.	140.0	65.0	160.0	0.0	.	.	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21231036	21231036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APOB	NM_000384	exon26	c.A8704T	p.S2902C	CCTGACTAGAGAA	.	107.0	49.0	106.0	0.0	.	761	.	.	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	hg19	2	26699020	26699020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OTOF	NM_194248	exon23	c.C2842T	p.P948S	CGGGTGGGAAGGC	.	49.0	18.0	44.0	0.0	.	524	.	.	Atlas-SNP
C2orf71	388939	hgsc.bcm.edu	hg19	2	29296302	29296302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C2orf71	NM_001029883	exon1	c.A826T	p.S276C	GCTTGCTGACTGT	.	53.0	22.0	60.0	0.0	.	146	.	.	Atlas-SNP
CAPN13	92291	hgsc.bcm.edu	hg19	2	30966296	30966296	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPN13	NM_144575	exon13	c.A1398T	p.S466S	CTCCGCTGATTTT	.	104.0	44.0	132.0	0.0	.	70	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32726807	32726807	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC6	NM_016252	exon47	c.A9059C	p.H3020P	CTAAACATGAAAA	.	88.0	28.0	94.0	0.0	.	838	.	.	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32750644	32750644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC6	NM_016252	exon59	c.A11869C	p.N3957H	GCTGCCAACAAAA	.	112.0	37.0	109.0	0.0	.	838	.	.	Atlas-SNP
TTC27	55622	hgsc.bcm.edu	hg19	2	32891805	32891805	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC27	NM_017735	exon7	c.A909T	p.P303P	CACTCCAGCACCC	.	54.0	28.0	107.0	0.0	.	71	.	.	Atlas-SNP
VIT	5212	hgsc.bcm.edu	hg19	2	36982076	36982076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VIT	NM_001177969	exon5	c.T288A	p.D96E	GCTTGATAATTCA	.	99.0	39.0	97.0	0.0	.	138	.	.	Atlas-SNP
VIT	5212	hgsc.bcm.edu	hg19	2	37035640	37035640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VIT	NM_053276	exon15	c.A1415G	p.Y472C	GCTTCTACTCGCT	.	105.0	43.0	157.0	0.0	.	138	.	.	Atlas-SNP
SIX2	10736	hgsc.bcm.edu	hg19	2	45235999	45235999	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIX2	NM_016932	exon1	c.A251T	p.Q84L	AGCTGCTGCAGCT	.	47.0	17.0	48.0	0.0	.	39	.	.	Atlas-SNP
TMEM247	388946	hgsc.bcm.edu	hg19	2	46706740	46706740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145051	exon1	c.A16G	p.R6G	GAGGACAGGGAGA	.	102.0	42.0	119.0	0.0	.	.	.	.	Atlas-SNP
MCFD2	90411	hgsc.bcm.edu	hg19	2	47134956	47134956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCFD2	NM_001171506	exon4	c.A302G	p.H101R	TCCTTATGGACAT	.	36.0	18.0	46.0	0.0	.	13	.	.	Atlas-SNP
FSHR	2492	hgsc.bcm.edu	hg19	2	49190265	49190265	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSHR	NM_000145	exon10	c.T1695C	p.S565S	GTCACTAGAGGAG	.	76.0	36.0	85.0	0.0	.	164	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50463975	50463975	+	Silent	SNP	C	C	A	rs200816799	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NRXN1	NM_001135659	exon19	c.G3618T	p.V1206V	CACTCGCACCAAT	.	139.0	56.0	144.0	0.0	.	1118	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54874335	54874335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPTBN1	NM_003128	exon24	c.C4934A	p.A1645E	ACTATGCAGAGAC	.	58.0	26.0	77.0	0.0	.	378	.	.	Atlas-SNP
MTIF2	4528	hgsc.bcm.edu	hg19	2	55479663	55479663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTIF2	NM_002453	exon8	c.G791T	p.G264V	ATCACTCCATCAT	.	171.0	85.0	143.0	0.0	.	64	.	.	Atlas-SNP
PNPT1	87178	hgsc.bcm.edu	hg19	2	55910944	55910944	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PNPT1	NM_033109	exon5	c.A429T	p.P143P	GCCAGCTGGAAAG	.	281.0	125.0	335.0	1.0	.	68	.	.	Atlas-SNP
ANTXR1	84168	hgsc.bcm.edu	hg19	2	69304560	69304560	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANTXR1	NM_032208	exon8	c.T582C	p.S194S	GGACAGTAAGGAT	.	63.0	26.0	78.0	0.0	.	128	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71780941	71780941	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYSF	NM_001130982	exon22	c.C2031T	p.C677C	AGGGTGCCACTAC	.	53.0	21.0	49.0	0.0	.	536	.	.	Atlas-SNP
SEMA4F	10505	hgsc.bcm.edu	hg19	2	74907007	74907007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA4F	NM_004263	exon14	c.G1984T	p.G662X	GGGGCGGGACTGG	.	57.0	22.0	70.0	0.0	.	89	.	.	Atlas-SNP
LRRTM1	347730	hgsc.bcm.edu	hg19	2	80529619	80529619	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	LRRTM1,NS,carcinoma,0,1	LRRTM1	NM_178839	exon2	c.G1326T	p.V442V	CAGGACCACGATG	.	27.0	10.0	37.0	0.0	.	251	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84954900	84954900	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH6	NM_001370	exon61	c.A10080G	p.R3360R	TTCAAGAGGACTT	.	77.0	35.0	77.0	0.0	.	194	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	85024758	85024758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH6	NM_001370	exon70	c.T11457A	p.H3819Q	AATGCATGAAAAT	.	57.0	33.0	65.0	0.0	.	194	.	.	Atlas-SNP
ASTL	431705	hgsc.bcm.edu	hg19	2	96795631	96795631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASTL	NM_001002036	exon8	c.C806T	p.A269V	TCCGAGGCACTCA	.	117.0	54.0	130.0	0.0	.	59	.	.	Atlas-SNP
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96966755	96966755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNRNP200	NM_014014	exon5	c.A611G	p.Q204R	TCAAACTGCACAT	.	132.0	53.0	119.0	0.0	.	195	.	.	Atlas-SNP
FER1L5	90342	hgsc.bcm.edu	hg19	2	97315365	97315365	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L5	NM_001113382	exon5	c.T345C	p.T115T	GTGTACTGTCACC	.	74.0	28.0	76.0	0.0	.	113	.	.	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	hg19	2	98866838	98866838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWA3B	NM_144992	exon20	c.C2731G	p.Q911E	AACCCCCAAGGAG	.	82.0	40.0	127.0	0.0	.	138	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	98994248	98994248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNGA3	NM_001298	exon3	c.G200T	p.G67V	TCACCGGCCAGGG	.	70.0	27.0	80.0	0.0	.	118	.	.	Atlas-SNP
INPP4A	3631	hgsc.bcm.edu	hg19	2	99182502	99182502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INPP4A	NM_001134224	exon22	c.A2305G	p.N769D	GGGTTTAACGTGC	.	64.0	29.0	72.0	0.0	.	205	.	.	Atlas-SNP
MRPL30	51263	hgsc.bcm.edu	hg19	2	99812077	99812077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRPL30	NM_145212	exon6	c.A395G	p.E132G	CAGAGGAGAACAT	.	127.0	59.0	142.0	0.0	.	20	.	.	Atlas-SNP
NPAS2	4862	hgsc.bcm.edu	hg19	2	101587535	101587535	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPAS2	NM_002518	exon12	c.A1139T	p.K380M	CACTAAAGGTACG	.	91.0	35.0	96.0	0.0	.	88	.	.	Atlas-SNP
NPAS2	4862	hgsc.bcm.edu	hg19	2	101594175	101594175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPAS2	NM_002518	exon15	c.C1396G	p.P466A	CAGGCCCCTCTGC	.	61.0	15.0	75.0	0.0	.	88	.	.	Atlas-SNP
SH3RF3	344558	hgsc.bcm.edu	hg19	2	110053581	110053581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3RF3	NM_001099289	exon7	c.G1807T	p.A603S	AGCCAAGCCCGGA	.	155.0	56.0	189.0	0.0	.	62	.	.	Atlas-SNP
SH3RF3	344558	hgsc.bcm.edu	hg19	2	110259210	110259210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3RF3	NM_001099289	exon10	c.A2611G	p.T871A	GGCCGCACAGGCC	.	32.0	12.0	46.0	0.0	.	62	.	.	Atlas-SNP
CKAP2L	150468	hgsc.bcm.edu	hg19	2	113518343	113518343	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CKAP2L	NM_152515	exon4	c.105-2A>T	.	AAGGCCTATAAAA	.	269.0	114.0	335.0	1.0	.	54	.	.	Atlas-SNP
IL1B	3553	hgsc.bcm.edu	hg19	2	113593196	113593196	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL1B	NM_000576	exon4	c.48-2A>G	.	TGCCACTGTAATA	.	51.0	23.0	79.0	0.0	.	35	.	.	Atlas-SNP
EN1	2019	hgsc.bcm.edu	hg19	2	119600649	119600649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EN1	NM_001426	exon2	c.G1044T	p.K348N	CCAGATCTTGATC	.	44.0	18.0	53.0	0.0	.	33	.	.	Atlas-SNP
CNTNAP5	129684	hgsc.bcm.edu	hg19	2	125175023	125175023	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTNAP5	NM_130773	exon4	c.T385A	p.F129I	CAGACCTTTGCAG	.	65.0	35.0	94.0	0.0	.	405	.	.	Atlas-SNP
SMPD4	55627	hgsc.bcm.edu	hg19	2	130939136	130939136	+	Silent	SNP	T	T	A	rs369506878	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMPD4	NM_017751	exon1	c.A39T	p.P13P	CAGAGATGGAAGC	.	63.0	32.0	82.0	0.0	.	67	.	.	Atlas-SNP
FAM168B	130074	hgsc.bcm.edu	hg19	2	131813019	131813019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM168B	NM_001009993	exon5	c.G301A	p.G101S	ACGTGCCTTGCTG	.	111.0	48.0	117.0	0.0	.	15	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141528495	141528495	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP1B	NM_018557	exon34	c.T5581A	p.C1861S	CTGTACACATACA	.	66.0	18.0	96.0	0.0	.	1315	.	.	Atlas-SNP
KIF5C	3800	hgsc.bcm.edu	hg19	2	149633250	149633250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF5C	NM_004522	exon1	c.G64A	p.E22K	GAAGCGGAGATCC	.	208.0	98.0	221.0	1.0	.	166	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152466569	152466569	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEB	NM_001271208	exon81	c.T12084C	p.D4028D	GGGATCATCTTCA	.	64.0	26.0	78.0	0.0	.	1697	.	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	hg19	2	162813739	162813739	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC4A10	NM_001178015	exon20	c.A2782T	p.S928C	ATGACCAGTATTC	.	82.0	29.0	101.0	0.0	.	309	.	.	Atlas-SNP
DPP4	1803	hgsc.bcm.edu	hg19	2	162851476	162851476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPP4	NM_001935	exon25	c.G2194T	p.A732S	CCATTGCCTGGAA	.	183.0	89.0	203.0	0.0	.	90	.	.	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	hg19	2	167298134	167298134	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCN7A	NM_002976	exon14	c.A1929G	p.A643A	GCCGAATGCAGCA	.	176.0	80.0	231.0	1.0	.	410	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170063518	170063518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP2	NM_004525	exon39	c.G6712A	p.G2238S	CCAAGCCCCGTGG	.	150.0	65.0	152.0	0.0	.	751	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170097673	170097673	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP2	NM_004525	exon25	c.T3870C	p.C1290C	CCGATCACAGAGC	.	99.0	48.0	94.0	0.0	.	751	.	.	Atlas-SNP
BBS5	129880	hgsc.bcm.edu	hg19	2	170354147	170354147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BBS5	NM_152384	exon8	c.A629G	p.K210R	CAATAAAGATTAG	.	262.0	13.0	304.0	0.0	.	27	.	.	Atlas-SNP
PHOSPHO2	493911	hgsc.bcm.edu	hg19	2	170557709	170557709	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHOSPHO2	NM_001199286	exon4	c.A228T	p.P76P	CACTCCAGGGATG	.	103.0	51.0	118.0	0.0	.	27	.	.	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	hg19	2	170806488	170806488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBR3	NM_172070	exon23	c.T3458C	p.I1153T	GCATCATTGAAGA	.	134.0	58.0	163.0	0.0	.	182	.	.	Atlas-SNP
MYO3B	140469	hgsc.bcm.edu	hg19	2	171243724	171243724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3B	NM_001083615	exon14	c.T1483C	p.Y495H	GGAAAATATCTGG	.	99.0	52.0	102.0	0.0	.	320	.	.	Atlas-SNP
MYO3B	140469	hgsc.bcm.edu	hg19	2	171260905	171260905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3B	NM_001083615	exon20	c.T2426A	p.L809Q	AGACCCTGGTTGG	.	100.0	46.0	120.0	0.0	.	320	.	.	Atlas-SNP
HNRNPA3	220988	hgsc.bcm.edu	hg19	2	178081594	178081594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HNRNPA3	NM_194247	exon7	c.A746G	p.Y249C	GAGGCTATGGTGG	.	45.0	20.0	43.0	0.0	.	42	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179398439	179398439	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	TTN_ENST00000359218,NS,carcinoma,0,5	TTN	NM_001267550	exon358	c.T102903A	p.G34301G	ATTGTCACCTGGT	.	64.0	33.0	76.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179401059	179401059	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon357	c.T100415A	p.L33472Q	CCACCTAGATTTT	.	71.0	45.0	97.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179477140	179477140	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon266	c.T50112A	p.T16704T	CTTGACAGTGGTA	.	69.0	37.0	84.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179482943	179482943	+	Missense_Mutation	SNP	T	T	A	rs368988689	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon252	c.A47242T	p.N15748Y	CAGGATTGTCAGT	.	81.0	37.0	87.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179584711	179584711	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon81	c.A23658T	p.L7886L	CTAACCTAGTACA	.	65.0	25.0	87.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179590678	179590678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon70	c.G20371A	p.E6791K	CCACCTCAAACGG	.	125.0	56.0	167.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179594257	179594257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon64	c.A18626T	p.E6209V	ACTACCTCCACAG	.	69.0	30.0	57.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179644181	179644181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon23	c.T3738A	p.H1246Q	AGAAATATGGAAT	.	96.0	39.0	133.0	0.0	.	18412	.	.	Atlas-SNP
ZNF385B	151126	hgsc.bcm.edu	hg19	2	180311266	180311266	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF385B	NM_152520	exon7	c.A902T	p.E301V	TGTGCCTCTAGCT	.	67.0	23.0	81.0	0.0	.	68	.	.	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	hg19	2	182339916	182339916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA4	NM_000885	exon4	c.T457G	p.Y153D	ATATTTTACATAA	.	125.0	55.0	115.0	0.0	.	142	.	.	Atlas-SNP
CERKL	375298	hgsc.bcm.edu	hg19	2	182413408	182413408	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CERKL	NM_001030311	exon8	c.A1150T	p.K384X	CTTACTTAAGTTT	.	191.0	82.0	225.0	0.0	.	138	.	.	Atlas-SNP
NEUROD1	4760	hgsc.bcm.edu	hg19	2	182543118	182543118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEUROD1	NM_002500	exon2	c.T470C	p.L157P	GAGCGCAGGATCT	.	63.0	29.0	62.0	0.0	.	67	.	.	Atlas-SNP
FSIP2	401024	hgsc.bcm.edu	hg19	2	186671974	186671974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSIP2	NM_173651	exon17	c.A18208G	p.K6070E	GAATCTAAGGATG	.	98.0	38.0	91.0	0.0	.	251	.	.	Atlas-SNP
COL3A1	1281	hgsc.bcm.edu	hg19	2	189864285	189864285	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL3A1	NM_000090	exon31	c.T2211A	p.P737P	AAGTCCTGGTCCA	.	48.0	25.0	43.0	0.0	.	292	.	.	Atlas-SNP
SDPR	8436	hgsc.bcm.edu	hg19	2	192711467	192711467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SDPR	NM_004657	exon1	c.T185A	p.L62Q	TTGTCCAGGAGCG	.	77.0	38.0	90.0	0.0	.	67	.	.	Atlas-SNP
RFTN2	130132	hgsc.bcm.edu	hg19	2	198540055	198540055	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RFTN2	NM_144629	exon1	c.T128A	p.F43Y	AGAGTAAAATCCA	.	71.0	28.0	107.0	0.0	.	68	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201469552	201469552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AOX1	NM_001159	exon9	c.A803G	p.N268S	TGGGAAACACCTC	.	71.0	29.0	102.0	0.0	.	152	.	.	Atlas-SNP
CDK15	65061	hgsc.bcm.edu	hg19	2	202672587	202672587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDK15	NM_001261435	exon3	c.A280T	p.S94C	AGGAAGAGCCTCC	.	53.0	27.0	54.0	0.0	.	66	.	.	Atlas-SNP
ALS2CR8	79800	hgsc.bcm.edu	hg19	2	203834660	203834660	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALS2CR8	NM_024744	exon11	c.A972G	p.V324V	AAAGGTACAGAAG	.	200.0	108.0	256.0	0.0	.	56	.	.	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	hg19	2	207346034	207346034	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon3	c.509+2T>C	.	AACAAGTGAGTAT	.	241.0	112.0	238.0	0.0	.	239	.	.	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	hg19	2	207424750	207424750	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon11	c.T1077A	p.I359I	TCAGATTGACATC	.	60.0	21.0	87.0	0.0	.	239	.	.	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	hg19	2	207436495	207436495	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon17	c.G1611T	p.G537G	CAACGGGGCTCAC	.	50.0	18.0	45.0	0.0	.	239	.	.	Atlas-SNP
C2orf80	389073	hgsc.bcm.edu	hg19	2	209047758	209047758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C2orf80	NM_001099334	exon4	c.T137C	p.L46S	ATGGCCAAGTCAT	.	77.0	33.0	103.0	0.0	.	19	.	.	Atlas-SNP
PTH2R	5746	hgsc.bcm.edu	hg19	2	209345825	209345825	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTH2R	NM_005048	exon10	c.A1012T	p.R338X	ACGGTTAGAGTTC	.	178.0	69.0	181.0	0.0	.	92	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210843330	210843330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UNC80	NM_032504	exon58	c.C8818A	p.R2940S	ATGTCCCGCTCTA	.	111.0	52.0	155.0	0.0	.	280	.	.	Atlas-SNP
MARCH4	57574	hgsc.bcm.edu	hg19	2	217124264	217124264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MARCH4	NM_020814	exon4	c.G1004T	p.R335L	GAGGTCCGGGGGT	.	89.0	34.0	114.0	0.0	.	50	.	.	Atlas-SNP
TNS1	7145	hgsc.bcm.edu	hg19	2	218713037	218713037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNS1	NM_022648	exon17	c.G1828T	p.A610S	CATGGGCATAGTG	.	91.0	32.0	100.0	0.0	.	251	.	.	Atlas-SNP
TTLL4	9654	hgsc.bcm.edu	hg19	2	219609870	219609870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTLL4	NM_014640	exon6	c.A1700T	p.H567L	CCAATCATGAGAA	.	116.0	43.0	152.0	0.0	.	96	.	.	Atlas-SNP
DES	1674	hgsc.bcm.edu	hg19	2	220285630	220285630	+	Missense_Mutation	SNP	C	C	A	rs375238266	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DES	NM_001927	exon5	c.C978A	p.H326Q	CCGACACCAGATC	.	61.0	26.0	68.0	0.0	.	53	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220342465	220342465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPEG	NM_005876	exon21	c.G4784T	p.R1595M	GAGGAAGGAGACT	.	75.0	29.0	91.0	0.0	.	272	.	.	Atlas-SNP
CHPF	79586	hgsc.bcm.edu	hg19	2	220406616	220406616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHPF	NM_024536	exon2	c.A610T	p.T204S	CCTCGGTGTAGGT	.	55.0	25.0	77.0	0.0	.	56	.	.	Atlas-SNP
CCDC140	151278	hgsc.bcm.edu	hg19	2	223168828	223168828	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC140	NM_153038	exon2	c.A207T	p.P69P	GGGGCCAAGCCCG	.	231.0	116.0	281.0	0.0	.	20	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225635277	225635277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK10	NM_014689	exon54	c.T6290G	p.L2097W	TCCTTCAAAAGCT	.	95.0	37.0	106.0	0.0	.	308	.	.	Atlas-SNP
COL4A4	1286	hgsc.bcm.edu	hg19	2	227875174	227875174	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL4A4	NM_000092	exon46	c.C4377A	p.G1459G	TCCAGGGCCAAAC	.	135.0	64.0	144.0	0.0	.	215	.	.	Atlas-SNP
AGFG1	3267	hgsc.bcm.edu	hg19	2	228398301	228398301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGFG1	NM_001135187	exon8	c.A923T	p.H308L	TTGCTCATTTTGA	.	86.0	39.0	109.0	0.0	.	80	.	.	Atlas-SNP
DAW1	164781	hgsc.bcm.edu	hg19	2	228762991	228762991	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_178821	exon6	c.A534T	p.A178A	TACAGCAGAAATA	.	384.0	143.0	451.0	0.0	.	.	.	.	Atlas-SNP
SLC16A14	151473	hgsc.bcm.edu	hg19	2	230911189	230911189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC16A14	NM_152527	exon4	c.C653A	p.P218Q	TCGTTTGGGTTTT	.	107.0	51.0	114.0	0.0	.	75	.	.	Atlas-SNP
CAB39	51719	hgsc.bcm.edu	hg19	2	231655654	231655654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAB39	NM_001130849	exon3	c.A182T	p.E61V	AAAAAGAGCCTCA	.	152.0	60.0	178.0	0.0	.	30	.	.	Atlas-SNP
PSMD1	5707	hgsc.bcm.edu	hg19	2	231944930	231944930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSMD1	NM_002807	exon12	c.G1315A	p.E439K	TATCAGGAAGGTG	.	86.0	40.0	110.0	0.0	.	77	.	.	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	232889007	232889007	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIS3L2	NM_001257282	exon4	c.A231T	p.P77P	TAATCCAAAGAAG	.	389.0	164.0	473.0	0.0	.	77	.	.	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	233001416	233001416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIS3L2	NM_152383	exon8	c.A937G	p.N313D	GACTGCAATTTTG	.	126.0	63.0	113.0	0.0	.	77	.	.	Atlas-SNP
UGT1A10	54575	hgsc.bcm.edu	hg19	2	234545950	234545950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UGT1A10	NM_019075	exon1	c.A782G	p.Y261C	TGGACTATCCCAA	.	82.0	34.0	89.0	0.0	.	71	.	.	Atlas-SNP
SPP2	6694	hgsc.bcm.edu	hg19	2	234978570	234978570	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPP2	NM_006944	exon7	c.551-2A>G	.	ATCTTTAGGGATC	.	71.0	37.0	72.0	0.0	.	35	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238275483	238275483	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A3	NM_004369	exon11	c.T5347A	p.S1783T	CCTCCGAGTCGAT	.	129.0	54.0	199.0	0.0	.	608	.	.	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	hg19	3	369957	369957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHL1	NM_001253388	exon3	c.A305T	p.H102L	TATCTCACTTTCA	.	163.0	85.0	187.0	0.0	.	242	.	.	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1425084	1425084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTN6	NM_014461	exon19	c.G2509T	p.G837C	GTGCTGGGCTATG	.	42.0	24.0	52.0	0.0	.	245	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4699946	4699946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPR1	NM_001099952	exon13	c.G1135T	p.D379Y	GGAGGTGACAGCC	.	80.0	39.0	100.0	0.0	.	659	.	.	Atlas-SNP
SSUH2	51066	hgsc.bcm.edu	hg19	3	8661623	8661623	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001256748	exon12	c.T1059A	p.Y353X	AGTGCCATAGATG	.	96.0	38.0	131.0	0.0	.	.	.	.	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9068619	9068619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRGAP3	NM_014850	exon13	c.G1600A	p.G534R	GCTTACCATATAA	.	67.0	26.0	87.0	0.0	.	146	.	.	Atlas-SNP
SRGAP3	9901	hgsc.bcm.edu	hg19	3	9068641	9068641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRGAP3	NM_014850	exon13	c.C1578G	p.C526W	ACGGATGCAGCTC	.	66.0	27.0	92.0	0.0	.	146	.	.	Atlas-SNP
ATP2B2	491	hgsc.bcm.edu	hg19	3	10370618	10370618	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP2B2	NM_001001331	exon23	c.A3612T	p.S1204S	GAGGGATGACGGC	.	98.0	46.0	139.0	0.0	.	304	.	.	Atlas-SNP
C3orf20	84077	hgsc.bcm.edu	hg19	3	14813588	14813588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C3orf20	NM_032137	exon16	c.T2510C	p.V837A	ACTCTGTCCTGAG	.	66.0	27.0	63.0	0.0	.	109	.	.	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	hg19	3	19492664	19492664	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNH8	NM_144633	exon10	c.A1593T	p.P531P	CTTTCCAGATGAA	.	52.0	26.0	58.0	0.0	.	189	.	.	Atlas-SNP
EFHB	151651	hgsc.bcm.edu	hg19	3	19921298	19921298	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFHB	NM_144715	exon14	c.2329-2A>G	.	GCAATCTAGAAAA	.	47.0	25.0	40.0	0.0	.	186	.	.	Atlas-SNP
OXSM	54995	hgsc.bcm.edu	hg19	3	25833109	25833109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXSM	NM_017897	exon2	c.G598T	p.G200C	CTCAAGGGCCCAA	.	114.0	55.0	123.0	0.0	.	54	.	.	Atlas-SNP
GADL1	339896	hgsc.bcm.edu	hg19	3	30903131	30903131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GADL1	NM_207359	exon2	c.T164C	p.L55P	ATTATTAGCCTAC	.	129.0	70.0	117.0	0.0	.	91	.	.	Atlas-SNP
CLASP2	23122	hgsc.bcm.edu	hg19	3	33552159	33552159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLASP2	NM_015097	exon37	c.A4235G	p.D1412G	GGGTAGTCTGCAG	.	106.0	45.0	126.0	0.0	.	138	.	.	Atlas-SNP
STAC	6769	hgsc.bcm.edu	hg19	3	36534678	36534678	+	Silent	SNP	T	T	C	rs199675015		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAC	NM_003149	exon6	c.T723C	p.N241N	AGCCAATGGGCCA	.	69.0	36.0	100.0	0.0	.	78	.	T|0.999;C|0.001	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	hg19	3	36897302	36897302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRANK1	NM_014831	exon12	c.A3779T	p.E1260V	TTATCCTCCTCAC	.	176.0	84.0	181.0	0.0	.	398	.	.	Atlas-SNP
CCR8	1237	hgsc.bcm.edu	hg19	3	39374403	39374403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCR8	NM_005201	exon2	c.G581T	p.W194L	TGAAGTGGAAGAT	.	61.0	25.0	63.0	0.0	.	34	.	.	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	hg19	3	42775068	42775068	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC13	NM_144719	exon11	c.A1405T	p.S469C	GGCCACTGGACCC	.	31.0	15.0	29.0	0.0	.	71	.	.	Atlas-SNP
ZNF662	389114	hgsc.bcm.edu	hg19	3	42956611	42956611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF662	NM_001134656	exon4	c.A1124T	p.Q375L	TTTCTCAGCACCA	.	109.0	47.0	106.0	0.0	.	112	.	.	Atlas-SNP
GTDC2	84892	hgsc.bcm.edu	hg19	3	43122344	43122344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032806	exon2	c.A580T	p.M194L	CCTCCATGAAGAA	.	70.0	35.0	88.0	0.0	.	.	.	.	Atlas-SNP
SNRK	54861	hgsc.bcm.edu	hg19	3	43389366	43389366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNRK	NM_017719	exon7	c.A1615G	p.S539G	AGCTGCAGTAGTT	.	158.0	80.0	176.0	0.0	.	118	.	.	Atlas-SNP
EXOSC7	23016	hgsc.bcm.edu	hg19	3	45046818	45046818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EXOSC7	NM_015004	exon6	c.G527C	p.G176A	AAGAGGGGTCGAA	.	114.0	47.0	132.0	0.0	.	19	.	.	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	46011256	46011256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FYCO1	NM_024513	exon7	c.A541G	p.R181G	GCGTCCTCCTGTG	.	34.0	17.0	57.0	0.0	.	115	.	.	Atlas-SNP
SMARCC1	6599	hgsc.bcm.edu	hg19	3	47651729	47651729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMARCC1	NM_003074	exon26	c.A2870G	p.Q957R	TCCATTTGCTGTC	.	65.0	31.0	64.0	0.0	.	85	.	.	Atlas-SNP
MST1R	4486	hgsc.bcm.edu	hg19	3	49924915	49924915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MST1R	NM_002447	exon20	c.A4028T	p.Q1343L	ACTATCTGCTCCA	.	90.0	38.0	123.0	0.0	.	205	.	.	Atlas-SNP
HEMK1	51409	hgsc.bcm.edu	hg19	3	50615001	50615001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEMK1	NM_016173	exon6	c.A611T	p.Q204L	ATGCTCAGAGGTA	.	88.0	41.0	120.0	0.0	.	17	.	.	Atlas-SNP
SEMA3G	56920	hgsc.bcm.edu	hg19	3	52471561	52471561	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3G	NM_020163	exon15	c.G1860T	p.G620G	CTCATCCCCTGGC	.	131.0	69.0	149.0	0.0	.	58	.	.	Atlas-SNP
SEMA3G	56920	hgsc.bcm.edu	hg19	3	52474434	52474434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3G	NM_020163	exon10	c.G1102T	p.G368W	AGGGCCCCCACTG	.	44.0	17.0	51.0	0.0	.	58	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52538054	52538054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAB1	NM_015136	exon10	c.A1033T	p.R345W	GTGTGCAGGGAAA	.	52.0	27.0	56.0	0.0	.	178	.	.	Atlas-SNP
ITIH4	3700	hgsc.bcm.edu	hg19	3	52860032	52860032	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITIH4	NM_002218	exon7	c.631-2A>T	.	TGAGCCTGGAGGA	.	51.0	17.0	73.0	0.0	.	74	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62631427	62631427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADPS	NM_003716	exon6	c.A1295G	p.Q432R	TCAGTCTGTAGTT	.	86.0	31.0	102.0	0.0	.	387	.	.	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	hg19	3	64148718	64148718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRICKLE2	NM_198859	exon3	c.C232A	p.H78N	GCTGGTGTAGTAG	.	68.0	25.0	68.0	0.0	.	88	.	.	Atlas-SNP
KBTBD8	84541	hgsc.bcm.edu	hg19	3	67054509	67054509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KBTBD8	NM_032505	exon3	c.A1118T	p.K373I	TATCCAAACCATC	.	90.0	48.0	104.0	0.0	.	101	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77595492	77595492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROBO2	NM_002942	exon7	c.C938T	p.P313L	TAGCTCCCCCACA	.	58.0	22.0	51.0	0.0	.	527	.	.	Atlas-SNP
CADM2	253559	hgsc.bcm.edu	hg19	3	85961527	85961527	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADM2	NM_001167675	exon6	c.A534T	p.V178V	AGATGTAAAATAT	.	254.0	118.0	224.0	0.0	.	195	.	.	Atlas-SNP
ARL13B	200894	hgsc.bcm.edu	hg19	3	93754239	93754239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARL13B	NM_182896	exon4	c.C445G	p.L149V	CTATCTCTGGAAA	.	156.0	67.0	153.0	0.0	.	52	.	.	Atlas-SNP
IMPG2	50939	hgsc.bcm.edu	hg19	3	100964730	100964730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IMPG2	NM_016247	exon12	c.C1459T	p.H487Y	CAGAATGAAGAGT	.	125.0	59.0	112.0	0.0	.	164	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108149731	108149731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH15	NM_014981	exon27	c.A3320G	p.E1107G	TCATTCTCCACTT	.	44.0	14.0	52.0	0.0	.	223	.	.	Atlas-SNP
DZIP3	9666	hgsc.bcm.edu	hg19	3	108396342	108396342	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DZIP3	NM_014648	exon26	c.2782-2A>T	.	TCTACCAGACACA	.	207.0	95.0	248.0	1.0	.	111	.	.	Atlas-SNP
DZIP3	9666	hgsc.bcm.edu	hg19	3	108396438	108396438	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DZIP3	NM_014648	exon26	c.A2876T	p.E959V	GTCCTGAGATACT	.	194.0	88.0	291.0	0.0	.	111	.	.	Atlas-SNP
TRAT1	50852	hgsc.bcm.edu	hg19	3	108572586	108572586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAT1	NM_016388	exon6	c.T423G	p.H141Q	ACTACATGCAATA	.	328.0	165.0	384.0	0.0	.	48	.	.	Atlas-SNP
SLC9C1	285335	hgsc.bcm.edu	hg19	3	111888053	111888053	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_183061	exon24	c.A3042G	p.L1014L	ATAAGATAAGTGT	.	75.0	28.0	68.0	0.0	.	.	.	.	Atlas-SNP
CCDC80	151887	hgsc.bcm.edu	hg19	3	112357721	112357721	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC80	NM_199511	exon2	c.T1032A	p.P344P	TGAGGGAGGTTGG	.	29.0	9.0	45.0	0.0	.	100	.	.	Atlas-SNP
WDR52	55779	hgsc.bcm.edu	hg19	3	113092276	113092276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR52	NM_001164496	exon18	c.T2426C	p.I809T	GTTTGGATGGGAT	.	90.0	37.0	79.0	0.0	.	151	.	.	Atlas-SNP
ATP6V1A	523	hgsc.bcm.edu	hg19	3	113524316	113524316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP6V1A	NM_001690	exon14	c.A1705G	p.I569V	TGGTCCATTATTC	.	176.0	74.0	182.0	0.0	.	71	.	.	Atlas-SNP
ARHGAP31	57514	hgsc.bcm.edu	hg19	3	119133814	119133814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP31	NM_020754	exon12	c.T3038A	p.L1013Q	CTGGCCTGAAAGG	.	65.0	23.0	65.0	0.0	.	175	.	.	Atlas-SNP
GPR156	165829	hgsc.bcm.edu	hg19	3	119886437	119886437	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR156	NM_153002	exon9	c.T1887A	p.P629P	TGCCCCAGGAACA	.	43.0	24.0	53.0	0.0	.	85	.	.	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	hg19	3	120871322	120871322	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STXBP5L	NM_014980	exon8	c.670-2A>G	.	TTTTCCAGCTGCT	.	47.0	20.0	72.0	0.0	.	159	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121263593	121263593	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLQ	NM_199420	exon2	c.A324C	p.G108G	ATTCTTTCCTTCC	.	159.0	67.0	166.0	0.0	.	273	.	.	Atlas-SNP
CD86	942	hgsc.bcm.edu	hg19	3	121828150	121828150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD86	NM_175862	exon5	c.T742C	p.W248R	ATTCCTTGGATTA	.	93.0	38.0	106.0	0.0	.	43	.	.	Atlas-SNP
UROC1	131669	hgsc.bcm.edu	hg19	3	126219694	126219694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UROC1	NM_001165974	exon12	c.A1169G	p.D390G	GTCGTGTCCAATT	.	57.0	22.0	72.0	0.0	.	150	.	.	Atlas-SNP
PODXL2	50512	hgsc.bcm.edu	hg19	3	127379659	127379659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PODXL2	NM_015720	exon3	c.A788C	p.Q263P	CCAGCCAAGAGGC	.	138.0	60.0	121.0	0.0	.	53	.	.	Atlas-SNP
CNBP	7555	hgsc.bcm.edu	hg19	3	128890513	128890513	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNBP	NM_003418	exon2	c.A88T	p.R30X	GGCTTCTCATTCC	.	293.0	141.0	367.0	1.0	.	12	.	.	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	hg19	3	130092493	130092493	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A5	NM_153264	exon2	c.G12A	p.L4L	GATCTTGCTAATT	.	388.0	150.0	457.0	0.0	.	205	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130281939	130281939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A6	NM_001102608	exon2	c.T92C	p.L31S	TGTTTTTGGTGGA	.	87.0	46.0	104.0	0.0	.	497	.	.	Atlas-SNP
COL6A6	131873	hgsc.bcm.edu	hg19	3	130284329	130284329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A6	NM_001102608	exon3	c.C1153A	p.Q385K	GCTGAGCAGTATG	.	101.0	46.0	117.0	0.0	.	497	.	.	Atlas-SNP
ATP2C1	27032	hgsc.bcm.edu	hg19	3	130714897	130714897	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	ATP2C1,NS,carcinoma,0,5	ATP2C1	NM_001199181	exon22	c.G2170T	p.E724X	GCAATCGAAGAGG	.	23.0	10.0	30.0	0.0	.	94	.	.	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132153447	132153447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC13	NM_015268	exon2	c.A53G	p.H18R	CAAAACATTCATG	.	26.0	15.0	43.0	0.0	.	253	.	.	Atlas-SNP
TMEM108	66000	hgsc.bcm.edu	hg19	3	132948183	132948183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM108	NM_023943	exon3	c.T28C	p.C10R	CTCTATTGCCAAC	.	44.0	14.0	60.0	0.0	.	67	.	.	Atlas-SNP
TMEM108	66000	hgsc.bcm.edu	hg19	3	133099726	133099726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM108	NM_023943	exon4	c.A1171T	p.R391W	CCCTCCAGGGTCT	.	66.0	29.0	69.0	0.0	.	67	.	.	Atlas-SNP
BFSP2	8419	hgsc.bcm.edu	hg19	3	133169265	133169265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	BFSP2,NS,lymphoid_neoplasm,0,1	BFSP2	NM_003571	exon4	c.T848C	p.V283A	GAGATGTTGAAAA	.	48.0	19.0	56.0	0.0	.	48	.	.	Atlas-SNP
TOPBP1	11073	hgsc.bcm.edu	hg19	3	133372268	133372268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TOPBP1	NM_007027	exon7	c.A843G	p.I281M	CTTGTATATGGAT	.	68.0	26.0	78.0	0.0	.	218	.	.	Atlas-SNP
CEP63	80254	hgsc.bcm.edu	hg19	3	134265095	134265095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP63	NM_001042383	exon8	c.G894T	p.K298N	AGTAAAGGCAACT	.	424.0	210.0	403.0	0.0	.	56	.	.	Atlas-SNP
SPSB4	92369	hgsc.bcm.edu	hg19	3	140785585	140785585	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPSB4	NM_080862	exon2	c.G639T	p.V213V	GGTGGTGAGTGCC	.	77.0	43.0	81.0	0.0	.	19	.	.	Atlas-SNP
XRN1	54464	hgsc.bcm.edu	hg19	3	142122605	142122605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XRN1	NM_001042604	exon18	c.A2014G	p.K672E	TTTTCTTCAAAAA	.	309.0	120.0	309.0	0.0	.	138	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142253962	142253962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATR	NM_001184	exon21	c.A3905T	p.H1302L	AGAGCATGAATAC	.	106.0	55.0	99.0	0.0	.	285	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142281191	142281191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATR	NM_001184	exon4	c.G1053T	p.Q351H	GAAATACTGCAGT	.	190.0	97.0	224.0	0.0	.	285	.	.	Atlas-SNP
CPB1	1360	hgsc.bcm.edu	hg19	3	148558665	148558665	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CPB1	NM_001871	exon5	c.A377T	p.E126V	AGATAGAGGCTTG	.	83.0	40.0	78.0	0.0	.	74	.	.	Atlas-SNP
ANKUB1	389161	hgsc.bcm.edu	hg19	3	149485426	149485426	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKUB1	NM_001144960	exon5	c.A1023G	p.A341A	AACTTTTGCCCCA	.	44.0	21.0	44.0	0.0	.	27	.	.	Atlas-SNP
FAM194A	131831	hgsc.bcm.edu	hg19	3	150396254	150396254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM194A	NM_152394	exon10	c.A1199C	p.Q400P	CTTAGTTGAAAAT	.	230.0	87.0	222.0	0.0	.	91	.	.	Atlas-SNP
P2RY1	5028	hgsc.bcm.edu	hg19	3	152554322	152554322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	P2RY1	NM_002563	exon1	c.A751T	p.N251Y	CTGGACAACTCTC	.	77.0	41.0	88.0	0.0	.	49	.	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	hg19	3	154145340	154145340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR149	NM_001038705	exon2	c.A1139G	p.Q380R	GCGTTCTGCCTGC	.	49.0	21.0	52.0	0.0	.	134	.	.	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	hg19	3	154145356	154145356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR149	NM_001038705	exon2	c.A1123G	p.I375V	TGATGATGCAGCC	.	56.0	23.0	58.0	0.0	.	134	.	.	Atlas-SNP
MME	4311	hgsc.bcm.edu	hg19	3	154889935	154889935	+	Silent	SNP	C	C	A	rs201494121	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	MME,NS,carcinoma,0,1	MME	NM_007287	exon21	c.C2010A	p.G670G	GAATGGCGAAGAA	.	358.0	167.0	370.0	1.0	.	133	.	.	Atlas-SNP
TRIM59	286827	hgsc.bcm.edu	hg19	3	160156798	160156798	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM59	NM_173084	exon3	c.T174C	p.N58N	TCTGCAATTAGGG	.	120.0	46.0	132.0	0.0	.	42	.	.	Atlas-SNP
SI	6476	hgsc.bcm.edu	hg19	3	164739156	164739156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SI	NM_001041	exon27	c.A3115G	p.K1039E	TCTTCTTTTGGGG	.	91.0	41.0	106.0	0.0	.	500	.	.	Atlas-SNP
LRRIQ4	344657	hgsc.bcm.edu	hg19	3	169539921	169539921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRIQ4	NM_001080460	exon1	c.A212G	p.K71R	GTTTAAAGAACAT	.	112.0	45.0	107.0	0.0	.	68	.	.	Atlas-SNP
SPATA16	83893	hgsc.bcm.edu	hg19	3	172643281	172643281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA16	NM_031955	exon7	c.T1083A	p.D361E	TTGAAGATCTGAA	.	163.0	75.0	201.0	0.0	.	111	.	.	Atlas-SNP
ECE2	9718	hgsc.bcm.edu	hg19	3	184009911	184009911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ECE2	NM_014693	exon19	c.G2537T	p.S846I	CCCACAGCCCTGC	.	106.0	26.0	119.0	0.0	.	303	.	.	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	hg19	3	184298263	184298263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPHB3	NM_004443	exon12	c.T2246A	p.L749Q	AGTACCTGTCCGA	.	80.0	35.0	105.0	0.0	.	114	.	.	Atlas-SNP
RTP4	64108	hgsc.bcm.edu	hg19	3	187088757	187088757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RTP4	NM_022147	exon2	c.A337T	p.R113W	ACCATGAGGATTC	.	103.0	48.0	109.0	0.0	.	20	.	.	Atlas-SNP
LEPREL1	55214	hgsc.bcm.edu	hg19	3	189691795	189691795	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LEPREL1	NM_001134418	exon11	c.910-2A>T	.	ATTCCCTGGAAGC	.	91.0	42.0	120.0	0.0	.	95	.	.	Atlas-SNP
CLDN16	10686	hgsc.bcm.edu	hg19	3	190120151	190120151	+	Missense_Mutation	SNP	G	G	T	rs104893732	bycluster;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLDN16	NM_006580	exon2	c.G350T	p.W117L	GCCTCTGGTGGGA	.	65.0	20.0	83.0	0.0	.	59	.	.	Atlas-SNP
CCDC50	152137	hgsc.bcm.edu	hg19	3	191078935	191078935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC50	NM_174908	exon4	c.A317G	p.E106G	TTCAGGAGAAGAA	.	384.0	157.0	442.0	0.0	.	39	.	.	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	hg19	3	193128796	193128796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP13A4	NM_032279	exon28	c.T3272C	p.I1091T	TCTGGTATATCAG	.	342.0	148.0	382.0	1.0	.	154	.	.	Atlas-SNP
ATP13A4	84239	hgsc.bcm.edu	hg19	3	193232491	193232491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP13A4	NM_032279	exon2	c.C230A	p.T77K	ACCGTTGTCCTCA	.	72.0	31.0	77.0	0.0	.	154	.	.	Atlas-SNP
OPA1	4976	hgsc.bcm.edu	hg19	3	193336697	193336697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OPA1	NM_130837	exon6	c.G650C	p.G217A	ATCGTGGATCTGA	.	59.0	20.0	72.0	0.0	.	79	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195511219	195511219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC4	NM_018406	exon2	c.C7232T	p.T2411I	TGACCTGTGGATG	.	319.0	40.0	339.0	0.0	.	1505	.	.	Atlas-SNP
TNK2	10188	hgsc.bcm.edu	hg19	3	195594061	195594061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNK2	NM_005781	exon13	c.G2961T	p.Q987H	AGCCCTCTGCACG	.	187.0	84.0	209.0	0.0	.	246	.	.	Atlas-SNP
RNF168	165918	hgsc.bcm.edu	hg19	3	196199329	196199329	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF168	NM_152617	exon6	c.A1077G	p.S359S	CACCCCTGATGTG	.	98.0	45.0	93.0	0.0	.	49	.	.	Atlas-SNP
ZNF721	170960	hgsc.bcm.edu	hg19	4	436177	436177	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF721	NM_133474	exon3	c.G2079G	p.K693K	TTTTTCTCCAGTA	.	93.0	31.0	119.0	0.0	.	205	.	.	Atlas-SNP
PDE6B	5158	hgsc.bcm.edu	hg19	4	656968	656968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDE6B	NM_001145291	exon15	c.T1912A	p.S638T	CTGCTCTCGGAGG	.	87.0	27.0	129.0	0.0	.	80	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3189596	3189596	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HTT	NM_002111	exon39	c.A5208T	p.P1736P	TTTGCCAGAAGAA	.	18.0	13.0	50.0	0.0	.	221	.	.	Atlas-SNP
HGFAC	3083	hgsc.bcm.edu	hg19	4	3447852	3447852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HGFAC	NM_001528	exon10	c.A1186T	p.R396W	TGCGGCAGGAGGC	.	83.0	41.0	127.0	0.0	.	69	.	.	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	hg19	4	4199319	4199319	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OTOP1	NM_177998	exon5	c.T1242A	p.C414X	CTCAGCACAGAGG	.	57.0	32.0	68.0	0.0	.	118	.	.	Atlas-SNP
ZBTB49	166793	hgsc.bcm.edu	hg19	4	4304686	4304686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZBTB49	NM_145291	exon3	c.A1123G	p.R375G	ACGGAGAGGCCTG	.	138.0	45.0	186.0	0.0	.	63	.	.	Atlas-SNP
SORCS2	57537	hgsc.bcm.edu	hg19	4	7730109	7730109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SORCS2	NM_020777	exon22	c.A2902G	p.K968E	TTTTCCAAGGAGC	.	47.0	18.0	72.0	0.0	.	98	.	.	Atlas-SNP
CD38	952	hgsc.bcm.edu	hg19	4	15850179	15850179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD38	NM_001775	exon8	c.A857T	p.Q286L	TTCTTCAGTGTGT	.	49.0	15.0	63.0	0.0	.	36	.	.	Atlas-SNP
PROM1	8842	hgsc.bcm.edu	hg19	4	16025970	16025970	+	Nonsense_Mutation	SNP	A	A	T	rs368213921	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PROM1	NM_006017	exon6	c.T642A	p.Y214X	CAATATATATTTG	.	55.0	33.0	73.0	0.0	.	91	.	.	Atlas-SNP
NCAPG	64151	hgsc.bcm.edu	hg19	4	17814020	17814020	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCAPG	NM_022346	exon2	c.A288C	p.L96F	CCTTTTAAATTAT	.	47.0	20.0	70.0	0.0	.	76	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20591288	20591288	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLIT2	NM_004787	exon30	c.T3110A	p.L1037Q	AGAAGCTGGACTT	.	86.0	34.0	96.0	0.0	.	290	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30724512	30724512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH7	NM_032457	exon1	c.T1468C	p.S490P	CACACCTCGACCC	.	45.0	22.0	57.0	0.0	.	215	.	.	Atlas-SNP
PGM2	55276	hgsc.bcm.edu	hg19	4	37836307	37836307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGM2	NM_018290	exon3	c.A317G	p.D106G	GTTTTGACGCCCG	.	377.0	182.0	426.0	0.0	.	45	.	.	Atlas-SNP
TLR10	81793	hgsc.bcm.edu	hg19	4	38774823	38774823	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR10	NM_001017388	exon2	c.G2389C	p.E797Q	GAGACTCTTCATT	.	74.0	20.0	76.0	0.0	.	87	.	.	Atlas-SNP
SHISA3	152573	hgsc.bcm.edu	hg19	4	42403330	42403330	+	Silent	SNP	C	C	A	rs377514630	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHISA3	NM_001080505	exon2	c.C579A	p.P193P	ACCGCCCCCGCCA	.	63.0	32.0	57.0	0.0	.	27	.	.	Atlas-SNP
ATP8A1	10396	hgsc.bcm.edu	hg19	4	42446619	42446619	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP8A1	NM_006095	exon32	c.A2991G	p.G997G	CTCCAATCCAGCT	.	58.0	26.0	95.0	0.0	.	206	.	.	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	hg19	4	43022411	43022411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRXCR1	NM_001080476	exon3	c.T668A	p.L223Q	GAGAACTGCAAGA	.	212.0	87.0	277.0	0.0	.	78	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46066495	46066495	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRG1	NM_173536	exon5	c.C588A	p.P196P	ATCCATGGGAAAG	.	328.0	137.0	403.0	0.0	.	172	.	.	Atlas-SNP
GABRG1	2565	hgsc.bcm.edu	hg19	4	46099287	46099287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRG1	NM_173536	exon2	c.G184T	p.G62X	TATCTCCTTCATG	.	126.0	66.0	204.0	1.0	.	172	.	.	Atlas-SNP
SGCB	6443	hgsc.bcm.edu	hg19	4	52890300	52890300	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGCB	NM_000232	exon6	c.T780G	p.S260S	CATCACAGATCCA	.	84.0	34.0	80.0	0.0	.	35	.	.	Atlas-SNP
SCFD2	152579	hgsc.bcm.edu	hg19	4	53786893	53786893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCFD2	NM_152540	exon6	c.A1706T	p.Q569L	CTTGCCTGGTGGG	.	41.0	12.0	58.0	0.0	.	78	.	.	Atlas-SNP
PDGFRA	5156	hgsc.bcm.edu	hg19	4	55138653	55138653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDGFRA	NM_006206	exon9	c.G1330C	p.D444H	CTTCCTGATATTG	.	53.0	26.0	79.0	0.0	.	1583	.	.	Atlas-SNP
KDR	3791	hgsc.bcm.edu	hg19	4	55984967	55984967	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KDR	NM_002253	exon3	c.G162A	p.R54R	CTGTCCCCTGAAA	.	115.0	60.0	121.0	0.0	.	307	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62758609	62758609	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPHN3	NM_015236	exon7	c.A1512T	p.R504R	AGCCCGAGAAATC	.	59.0	26.0	99.0	0.0	.	800	.	.	Atlas-SNP
UBA6	55236	hgsc.bcm.edu	hg19	4	68506897	68506897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBA6	NM_018227	exon18	c.A1526G	p.Q509R	AGGAACTGTCTAT	.	85.0	46.0	96.0	0.0	.	98	.	.	Atlas-SNP
TMPRSS11A	339967	hgsc.bcm.edu	hg19	4	68789885	68789885	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS11A	NM_001114387	exon7	c.482-1G>T	.	TCATTGCTGAAAA	.	52.0	16.0	93.0	0.0	.	74	.	.	Atlas-SNP
CSN3	1448	hgsc.bcm.edu	hg19	4	71113535	71113535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSN3	NM_005212	exon3	c.G55T	p.A19S	CCCCAGGCTGTGG	.	278.0	85.0	318.0	0.0	.	43	.	.	Atlas-SNP
RUFY3	22902	hgsc.bcm.edu	hg19	4	71629350	71629350	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RUFY3	NM_001130709	exon3	c.A614T	p.E205V	CCGCAGAGATAAC	.	314.0	160.0	400.0	0.0	.	61	.	.	Atlas-SNP
NPFFR2	10886	hgsc.bcm.edu	hg19	4	72994372	72994372	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPFFR2	NM_004885	exon2	c.A370T	p.T124S	AATGACACAAAGC	.	79.0	36.0	83.0	0.0	.	98	.	.	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73414452	73414452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS3	NM_014243	exon3	c.A247G	p.N83D	TGATGTTAAAGAA	.	92.0	42.0	131.0	0.0	.	164	.	.	Atlas-SNP
CXCL1	2919	hgsc.bcm.edu	hg19	4	74735406	74735406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CXCL1	NM_001511	exon2	c.C121A	p.L41M	ACTGAACTGCGCT	.	134.0	54.0	153.0	0.0	.	6	.	.	Atlas-SNP
C4orf26	152816	hgsc.bcm.edu	hg19	4	76489571	76489571	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C4orf26	NM_178497	exon2	c.T315G	p.Y105X	ATTTTATTGGCCA	.	206.0	77.0	280.0	0.0	.	24	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79229364	79229364	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_001166133	exon15	c.1678+1G>T	.	GTAGCGGTGAGTG	.	75.0	27.0	115.0	0.0	.	779	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79285157	79285157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_001166133	exon22	c.A2671T	p.S891C	ACCTGCAGCACCA	.	80.0	33.0	100.0	0.0	.	779	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79458286	79458286	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_025074	exon72	c.T11230A	p.Y3744N	ACAATCTACAATG	.	87.0	31.0	119.0	0.0	.	779	.	.	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	hg19	4	91549369	91549369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145065	exon6	c.A1918G	p.R640G	ATGAAGAGAGTTC	.	117.0	64.0	146.0	0.0	.	.	.	.	Atlas-SNP
GRID2	2895	hgsc.bcm.edu	hg19	4	94436432	94436432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRID2	NM_001510	exon13	c.A2063G	p.Y688C	CGGTATATGAGCA	.	80.0	40.0	88.0	0.0	.	233	.	.	Atlas-SNP
ATOH1	474	hgsc.bcm.edu	hg19	4	94750985	94750985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATOH1	NM_005172	exon1	c.C908A	p.T303K	CCCTGACAGCGAT	.	57.0	28.0	38.0	0.0	.	40	.	.	Atlas-SNP
SLC9B1	150159	hgsc.bcm.edu	hg19	4	103822469	103822469	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_139173	exon12	c.T1353A	p.A451A	TTCTAGAGCCAGA	.	202.0	49.0	213.0	0.0	.	.	.	.	Atlas-SNP
TBCK	93627	hgsc.bcm.edu	hg19	4	107154797	107154797	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBCK	NM_001163436	exon16	c.A1460T	p.H487L	TTGGCATGAATAG	.	244.0	117.0	281.0	0.0	.	89	.	.	Atlas-SNP
ALPK1	80216	hgsc.bcm.edu	hg19	4	113303587	113303587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALPK1	NM_001102406	exon4	c.A155T	p.Q52L	TGATCCAGGAGGC	.	215.0	105.0	243.0	1.0	.	125	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114278661	114278661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK2	NM_001148	exon38	c.A8887G	p.T2963A	TCTGTTACCATCA	.	87.0	39.0	114.0	0.0	.	576	.	.	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	hg19	4	115858495	115858495	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST4	NM_022569	exon5	c.C1386T	p.G462G	AATGAAGCCCTTT	.	90.0	37.0	93.0	0.0	.	193	.	.	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	hg19	4	115997739	115997739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST4	NM_022569	exon2	c.A454G	p.K152E	AGTATTTTTCTAA	.	104.0	37.0	113.0	0.0	.	193	.	.	Atlas-SNP
NDST3	9348	hgsc.bcm.edu	hg19	4	119174753	119174753	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST3	NM_004784	exon13	c.T2499A	p.S833S	GGATTCTGATGTA	.	271.0	103.0	318.0	0.0	.	107	.	.	Atlas-SNP
SEC24D	9871	hgsc.bcm.edu	hg19	4	119727008	119727008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC24D	NM_014822	exon7	c.A903G	p.I301M	GTCTTGTATCATG	.	44.0	20.0	28.0	0.0	.	96	.	.	Atlas-SNP
BBS7	55212	hgsc.bcm.edu	hg19	4	122756329	122756329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BBS7	NM_018190	exon14	c.A1481G	p.H494R	CTTTGATGGAGTG	.	95.0	29.0	140.0	0.0	.	61	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123113385	123113385	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1109	NM_015312	exon9	c.A903T	p.G301G	TATAGGACTTGTT	.	110.0	54.0	95.0	0.0	.	424	.	.	Atlas-SNP
ADAD1	132612	hgsc.bcm.edu	hg19	4	123336766	123336766	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAD1	NM_139243	exon11	c.T1482A	p.T494T	GATCACTGAAAGG	.	82.0	36.0	98.0	0.0	.	94	.	.	Atlas-SNP
SPATA5	166378	hgsc.bcm.edu	hg19	4	123859404	123859404	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA5	NM_145207	exon8	c.A1458T	p.S486S	TGGTTCAGTAAGT	.	52.0	17.0	80.0	0.0	.	62	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126328165	126328165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon3	c.T5438C	p.L1813P	CACTGCTAGTTCG	.	80.0	12.0	117.0	0.0	.	1752	.	.	Atlas-SNP
PCDH10	57575	hgsc.bcm.edu	hg19	4	134084265	134084265	+	Silent	SNP	C	C	A	rs151224823	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH10	NM_032961	exon4	c.C2931A	p.G977G	TCCTGGCATGGAC	.	89.0	37.0	92.0	0.0	.	290	.	C|0.998;G|0.002	Atlas-SNP
ELMOD2	255520	hgsc.bcm.edu	hg19	4	141448650	141448650	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELMOD2	NM_153702	exon3	c.171+2T>C	.	ATAAGGTAGGATA	.	272.0	115.0	375.0	0.0	.	16	.	.	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	hg19	4	143007366	143007366	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INPP4B	NM_003866	exon25	c.A2418G	p.L806L	ATTTTCTAGCAAT	.	28.0	15.0	26.0	0.0	.	132	.	.	Atlas-SNP
USP38	84640	hgsc.bcm.edu	hg19	4	144133531	144133531	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP38	NM_032557	exon8	c.A1558T	p.R520X	ACTCCCAGATCAC	.	73.0	34.0	65.0	0.0	.	92	.	.	Atlas-SNP
TTC29	83894	hgsc.bcm.edu	hg19	4	147860987	147860987	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC29	NM_031956	exon3	c.A61T	p.K21X	GCAGCTTCTGTCT	.	84.0	44.0	105.0	0.0	.	63	.	.	Atlas-SNP
TIGD4	201798	hgsc.bcm.edu	hg19	4	153691590	153691590	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TIGD4	NM_145720	exon2	c.T567C	p.Y189Y	CATTCGATAAAGC	.	108.0	48.0	160.0	0.0	.	53	.	.	Atlas-SNP
FHDC1	85462	hgsc.bcm.edu	hg19	4	153897040	153897040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FHDC1	NM_033393	exon11	c.C2597A	p.S866Y	GAGGCTCCCTGAA	.	177.0	83.0	243.0	0.0	.	102	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158262575	158262575	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA2	NM_000826	exon12	c.T2004C	p.Y668Y	TGCTTATGGAACA	.	86.0	43.0	82.0	0.0	.	358	.	.	Atlas-SNP
TMEM144	55314	hgsc.bcm.edu	hg19	4	159174638	159174638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM144	NM_018342	exon13	c.A997G	p.I333V	TGCATCATCTTGA	.	43.0	15.0	55.0	0.0	.	34	.	.	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	hg19	4	162954782	162954782	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSTL5	NM_020116	exon3	c.T155A	p.V52D	CCTTTGACTCTTG	.	107.0	50.0	147.0	0.0	.	207	.	.	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	hg19	4	169299546	169299546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX60L	NM_001012967	exon33	c.G4444T	p.A1482S	ATTTTGCTGGAAT	.	253.0	87.0	331.0	1.0	.	116	.	.	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	hg19	4	173730577	173730577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GALNTL6	NM_001034845	exon6	c.A619G	p.K207E	CGCACCAAGAAAA	.	85.0	27.0	104.0	0.0	.	102	.	.	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	hg19	4	175897487	175897487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.A811C	p.K271Q	TATTGCAAGTGGA	.	117.0	50.0	152.0	0.0	.	262	.	.	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	hg19	4	175897603	175897603	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.A927T	p.P309P	TACACCACACCGT	.	155.0	56.0	243.0	0.0	.	262	.	.	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	hg19	4	175899050	175899050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.C2374A	p.P792T	TTGACGCCTTCCC	.	108.0	28.0	174.0	0.0	.	262	.	.	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	hg19	4	177098697	177098697	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR17	NM_170710	exon30	c.A3741G	p.L1247L	GAGACTAAAAGAA	.	96.0	50.0	120.0	0.0	.	198	.	.	Atlas-SNP
VEGFC	7424	hgsc.bcm.edu	hg19	4	177608644	177608644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	VEGFC,NS,carcinoma,0,1	VEGFC	NM_005429	exon6	c.G842A	p.G281E	TTTGGTCCACAGA	.	45.0	17.0	39.0	0.0	.	94	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183549876	183549876	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001080477	exon4	c.A822T	p.A274A	AATGGCATCTGGC	.	102.0	73.0	268.0	0.0	.	.	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187538294	187538294	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT1	NM_005245	exon11	c.G8940A	p.V2980V	TTTCTTCACATAT	.	47.0	36.0	126.0	0.0	.	500	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187539226	187539226	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT1	NM_005245	exon10	c.A8514T	p.S2838S	GGTTCCTGAGTCA	.	48.0	29.0	83.0	0.0	.	500	.	.	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	hg19	5	163383	163383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHG4B	NM_052909	exon11	c.A2128T	p.T710S	ACCCAGACCCTGG	.	41.0	32.0	99.0	0.0	.	167	.	.	Atlas-SNP
BRD9	65980	hgsc.bcm.edu	hg19	5	878542	878542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRD9	NM_023924	exon11	c.A1199T	p.D400V	TTCAAGTCGCCAA	.	59.0	13.0	72.0	0.0	.	113	.	.	Atlas-SNP
TRIP13	9319	hgsc.bcm.edu	hg19	5	901481	901481	+	Nonsense_Mutation	SNP	T	T	G	rs375761713	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIP13	NM_004237	exon5	c.T470G	p.L157X	CAACTTTACTGTT	.	77.0	33.0	129.0	0.0	.	41	.	.	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	hg19	5	1053467	1053467	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC12A7	NM_006598	exon23	c.A3157T	p.N1053Y	TACAGTTCTCGTC	.	58.0	25.0	78.0	0.0	.	97	.	.	Atlas-SNP
TERT	7015	hgsc.bcm.edu	hg19	5	1254534	1254534	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TERT	NM_198253	exon15	c.C3244T	p.L1082L	GAGTCAGCTTGAG	.	56.0	25.0	78.0	0.0	.	2594	.	.	Atlas-SNP
SLC6A3	6531	hgsc.bcm.edu	hg19	5	1414820	1414820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC6A3	NM_001044	exon8	c.A1142G	p.D381G	GCCACGTCCCCGA	.	40.0	18.0	56.0	0.0	.	102	.	.	Atlas-SNP
ADCY2	108	hgsc.bcm.edu	hg19	5	7817092	7817092	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY2	NM_020546	exon23	c.G2997C	p.V999V	GCGAGTGGGTACG	.	104.0	42.0	169.0	0.0	.	337	.	.	Atlas-SNP
MTRR	4552	hgsc.bcm.edu	hg19	5	7878172	7878172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTRR	NM_024010	exon5	c.G598T	p.A200S	TCACCTGCATCCT	.	38.0	20.0	71.0	0.0	.	74	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11098804	11098804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CTNND2,colon,carcinoma,0,1	CTNND2	NM_001332	exon15	c.G2520T	p.M840I	CCACAGCATCTGG	.	63.0	28.0	71.0	0.0	.	289	.	.	Atlas-SNP
CTNND2	1501	hgsc.bcm.edu	hg19	5	11117662	11117662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CTNND2,NS,carcinoma,0,1	CTNND2	NM_001332	exon13	c.G2177T	p.G726V	TCCTCTCCGGCCG	.	78.0	29.0	122.0	0.0	.	289	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16711259	16711259	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO10	NM_012334	exon20	c.C2025A	p.V675V	TCTTCGGACCGCA	.	104.0	60.0	180.0	0.0	.	198	.	.	Atlas-SNP
TTC23L	153657	hgsc.bcm.edu	hg19	5	34880306	34880306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC23L	NM_144725	exon9	c.A970G	p.I324V	TATTTCATAAGAA	.	198.0	94.0	186.0	0.0	.	47	.	.	Atlas-SNP
SPEF2	79925	hgsc.bcm.edu	hg19	5	35709050	35709050	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPEF2	NM_024867	exon19	c.T2666A	p.V889D	TTGAAGTTGAGAA	.	218.0	81.0	243.0	0.0	.	324	.	.	Atlas-SNP
C6	729	hgsc.bcm.edu	hg19	5	41143008	41143008	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6	NM_001115131	exon18	c.A2724T	p.T908T	GTTCAATGTTTTC	.	82.0	34.0	89.0	0.0	.	197	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52369005	52369005	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	ITGA2_ENST00000296585,NS,carcinoma,0,2	ITGA2	NM_002203	exon20	c.G2487A	p.L829L	AACGCTGAAAAAT	.	79.0	31.0	80.0	2.0	.	211	.	.	Atlas-SNP
PPAP2A	8611	hgsc.bcm.edu	hg19	5	54763943	54763943	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPAP2A	NM_176895	exon3	c.A248T	p.N83I	AAAAGGTTACAGT	.	57.0	22.0	74.0	0.0	.	42	.	.	Atlas-SNP
PLK2	10769	hgsc.bcm.edu	hg19	5	57750786	57750786	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLK2	NM_006622	exon13	c.A1818T	p.L606L	AGATTTTAGCCAC	.	123.0	54.0	157.0	0.0	.	71	.	.	Atlas-SNP
SLC30A5	64924	hgsc.bcm.edu	hg19	5	68423913	68423913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC30A5	NM_022902	exon15	c.A2081G	p.H694R	CAATTCATATACA	.	66.0	27.0	73.0	0.0	.	54	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71494454	71494454	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP1B	NM_005909	exon5	c.G5272C	p.D1758H	CCCAGAGATATGT	.	49.0	18.0	63.0	0.0	.	243	.	.	Atlas-SNP
RASGRF2	5924	hgsc.bcm.edu	hg19	5	80363997	80363997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASGRF2	NM_006909	exon3	c.A542T	p.E181V	AATCAGAGGTATT	.	61.0	42.0	79.0	0.0	.	165	.	.	Atlas-SNP
XRCC4	7518	hgsc.bcm.edu	hg19	5	82491711	82491711	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XRCC4	NM_003401	exon4	c.A438T	p.K146N	GCAGAAAGAAAAT	.	45.0	29.0	50.0	0.0	.	37	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90055290	90055290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR98	NM_032119	exon58	c.A12005G	p.N4002S	CGTTCAATATTTC	.	72.0	24.0	107.0	0.0	.	605	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90077396	90077396	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR98	NM_032119	exon65	c.13231+1G>T	.	TCGAAGGTAGGTT	.	182.0	60.0	262.0	0.0	.	605	.	.	Atlas-SNP
TMEM232	642987	hgsc.bcm.edu	hg19	5	109904164	109904164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM232	NM_001039763	exon11	c.C1439T	p.A480V	TTGATTGCATTTT	.	82.0	15.0	113.0	0.0	.	57	.	.	Atlas-SNP
WDR36	134430	hgsc.bcm.edu	hg19	5	110430616	110430616	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR36	NM_139281	exon2	c.331-2A>T	.	TTAAACAGGTTCA	.	50.0	28.0	77.0	0.0	.	111	.	.	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	hg19	5	121780395	121780395	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNCAIP	NM_005460	exon8	c.T1560C	p.S520S	GGCCTCTCAAGTG	.	80.0	29.0	113.0	0.0	.	308	.	.	Atlas-SNP
ZNF608	57507	hgsc.bcm.edu	hg19	5	123983650	123983650	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF608	NM_020747	exon4	c.A2427G	p.K809K	TTTGTCTTTGAGT	.	127.0	36.0	169.0	0.0	.	117	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127609596	127609596	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN2	NM_001999	exon61	c.A7776C	p.P2592P	ACTGCCTGGAGTG	.	150.0	78.0	202.0	0.0	.	858	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127653902	127653902	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN2	NM_001999	exon36	c.T4656C	p.G1552G	ATAGCGACCAGGC	.	181.0	94.0	236.0	0.0	.	858	.	.	Atlas-SNP
FNIP1	96459	hgsc.bcm.edu	hg19	5	131066598	131066598	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FNIP1	NM_001008738	exon3	c.A353T	p.Q118L	CTTACCTGGTACT	.	115.0	46.0	172.0	0.0	.	104	.	.	Atlas-SNP
PDLIM4	8572	hgsc.bcm.edu	hg19	5	131607517	131607517	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDLIM4	NM_003687	exon6	c.T704A	p.L235H	GGAACCTCAAGCC	.	61.0	18.0	62.0	0.0	.	22	.	.	Atlas-SNP
TCF7	6932	hgsc.bcm.edu	hg19	5	133451714	133451714	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCF7	NM_003202	exon3	c.A431T	p.Q144L	AGCCGCAGCCCCC	.	76.0	35.0	149.0	0.0	.	81	.	.	Atlas-SNP
CDKL3	51265	hgsc.bcm.edu	hg19	5	133644327	133644327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDKL3	NM_001113575	exon8	c.A973T	p.R325W	CTTTCCTGAGTTC	.	47.0	26.0	57.0	0.0	.	76	.	.	Atlas-SNP
DDX46	9879	hgsc.bcm.edu	hg19	5	134109540	134109540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX46	NM_014829	exon5	c.A602G	p.E201G	GTTTAGAGGACGA	.	116.0	69.0	175.0	0.0	.	77	.	.	Atlas-SNP
DNAJC18	202052	hgsc.bcm.edu	hg19	5	138760775	138760775	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC18	NM_152686	exon5	c.A588G	p.T196T	GTCATCTGTCACA	.	53.0	27.0	57.0	0.0	.	30	.	.	Atlas-SNP
PSD2	84249	hgsc.bcm.edu	hg19	5	139193135	139193135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSD2	NM_032289	exon3	c.T613A	p.F205I	ATGGCGTTTGAGG	.	78.0	49.0	93.0	0.0	.	88	.	.	Atlas-SNP
HARS	3035	hgsc.bcm.edu	hg19	5	140056273	140056273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HARS	NM_002109	exon10	c.A1160G	p.E387G	ATCCGCTCCACCC	.	76.0	28.0	120.0	0.0	.	57	.	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	hg19	5	140180880	140180880	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA3	NM_031497	exon1	c.A98T	p.Y33F	TCCACTACTCCGT	.	34.0	17.0	25.0	0.0	.	396	.	.	Atlas-SNP
PCDHA7	56141	hgsc.bcm.edu	hg19	5	140215472	140215472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA7	NM_031852	exon1	c.C1504G	p.R502G	GGCGAGCGCGCGC	.	50.0	14.0	53.0	0.0	.	367	.	.	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	hg19	5	140237048	140237048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA10	NM_031859	exon1	c.A1415T	p.H472L	GCTGCCACATCTT	.	78.0	72.0	94.0	0.0	.	358	.	.	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	hg19	5	140237342	140237342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA10	NM_031859	exon1	c.G1709T	p.G570V	CCGCTGGCAGCGC	.	24.0	21.0	25.0	0.0	.	358	.	.	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	hg19	5	140257188	140257188	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA12	NM_018903	exon1	c.C2131T	p.L711L	AGCCTGCTGGTGC	.	67.0	36.0	78.0	0.0	.	196	.	.	Atlas-SNP
PCDHA13	56136	hgsc.bcm.edu	hg19	5	140263324	140263324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA13	NM_031865	exon1	c.T1471A	p.S491T	CTGGTCTCCTACT	.	80.0	37.0	102.0	0.0	.	213	.	.	Atlas-SNP
PCDHB3	56132	hgsc.bcm.edu	hg19	5	140480277	140480277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHB3	NM_018937	exon1	c.T44C	p.L15S	AAGTCTTGCTTCT	.	77.0	29.0	112.0	0.0	.	208	.	.	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	hg19	5	140572209	140572209	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHB10	NM_018930	exon1	c.T84C	p.S28S	AGGTTCTGGGTTT	.	290.0	146.0	377.0	0.0	.	177	.	.	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	hg19	5	140725276	140725276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	PCDHGA3_ENST00000253812,extremity,malignant_melanoma,+1,1	PCDHGA3	NM_032011	exon1	c.C1676T	p.A559V	ACAACGCGCCCGA	.	68.0	26.0	92.0	0.0	.	246	.	.	Atlas-SNP
PCDHGB3	56102	hgsc.bcm.edu	hg19	5	140751344	140751344	+	Silent	SNP	A	A	T	rs368442078	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHGB3	NM_018924	exon1	c.A1383T	p.V461V	GCATGTAGCTGAG	.	64.0	33.0	93.0	0.0	.	168	.	.	Atlas-SNP
PCDHGA10	56106	hgsc.bcm.edu	hg19	5	140793269	140793269	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHGA10	NM_032090	exon1	c.T527A	p.L176H	ATCAGCTCAGCCC	.	54.0	36.0	68.0	0.0	.	114	.	.	Atlas-SNP
PCDHGA10	56106	hgsc.bcm.edu	hg19	5	140794504	140794504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHGA10	NM_032090	exon1	c.C1762T	p.P588S	GCAGAGCCCGGCT	.	45.0	13.0	50.0	0.0	.	114	.	.	Atlas-SNP
PCDHGC3	5098	hgsc.bcm.edu	hg19	5	140856012	140856012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHGC3	NM_032402	exon1	c.T329C	p.L110S	TGGAGTTGGTAGT	.	95.0	61.0	108.0	0.0	.	173	.	.	Atlas-SNP
ADRB2	154	hgsc.bcm.edu	hg19	5	148206948	148206948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADRB2	NM_000024	exon1	c.A554G	p.Y185C	ACTGCTATGCCAA	.	51.0	19.0	53.0	0.0	.	42	.	.	Atlas-SNP
SH3TC2	79628	hgsc.bcm.edu	hg19	5	148406142	148406142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3TC2	NM_024577	exon12	c.A3046T	p.T1016S	TGGCGGTATTTAG	.	126.0	58.0	167.0	0.0	.	178	.	.	Atlas-SNP
CAMK2A	815	hgsc.bcm.edu	hg19	5	149602599	149602599	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAMK2A	NM_015981	exon18	c.G1419A	p.W473X	GATCTGCCATTTG	.	39.0	20.0	61.0	0.0	.	42	.	.	Atlas-SNP
SLC36A2	153201	hgsc.bcm.edu	hg19	5	150704910	150704910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC36A2	NM_181776	exon8	c.T947A	p.L316Q	TAGCCCAGAGCCG	.	40.0	17.0	69.0	0.0	.	71	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150945854	150945854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT2	NM_001447	exon1	c.A2639C	p.H880P	TCCAGGTGTCCTG	.	84.0	33.0	107.0	0.0	.	465	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150946124	150946124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT2	NM_001447	exon1	c.T2369C	p.V790A	ACTGTTACATTGA	.	51.0	24.0	52.0	0.0	.	465	.	.	Atlas-SNP
FAXDC2	10826	hgsc.bcm.edu	hg19	5	154200873	154200873	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032385	exon8	c.C792T	p.G264G	GTGGTAGCCACAG	.	164.0	83.0	217.0	1.0	.	.	.	.	Atlas-SNP
GEMIN5	25929	hgsc.bcm.edu	hg19	5	154287223	154287223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEMIN5	NM_015465	exon16	c.A2323G	p.N775D	CACCATTCTCAAC	.	89.0	28.0	132.0	0.0	.	120	.	.	Atlas-SNP
GEMIN5	25929	hgsc.bcm.edu	hg19	5	154317547	154317547	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEMIN5	NM_015465	exon1	c.A147G	p.P49P	TGTCCCTGGACTC	.	127.0	60.0	139.0	0.0	.	120	.	.	Atlas-SNP
SOX30	11063	hgsc.bcm.edu	hg19	5	157065688	157065688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	SOX30,NS,haematopoietic_neoplasm,0,1	SOX30	NM_178424	exon4	c.A1430T	p.Q477L	GGGCTCTGGACTG	.	55.0	29.0	71.0	0.0	.	67	.	.	Atlas-SNP
PWWP2A	114825	hgsc.bcm.edu	hg19	5	159519900	159519900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PWWP2A	NM_001130864	exon2	c.A1757T	p.D586V	GTGCTATCAATGC	.	33.0	13.0	41.0	0.0	.	64	.	.	Atlas-SNP
PWWP2A	114825	hgsc.bcm.edu	hg19	5	159519933	159519933	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PWWP2A	NM_001130864	exon2	c.C1724G	p.S575C	GAGTCAGATTTCT	.	39.0	17.0	45.0	0.0	.	64	.	.	Atlas-SNP
GABRB2	2561	hgsc.bcm.edu	hg19	5	160753450	160753450	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRB2	NM_021911	exon10	c.T1116C	p.Y372Y	GGATCGATATTGG	.	55.0	16.0	53.0	0.0	.	161	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169122911	169122911	+	Silent	SNP	G	G	T	rs199921409	bycluster;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon10	c.G948T	p.T316T	GTGCACGCAGGGA	.	56.0	16.0	75.0	0.0	.	389	.	G|0.999;A|0.001	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169144485	169144485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon21	c.A2129T	p.Y710F	TGGCTTACAAGTA	.	64.0	35.0	96.0	0.0	.	389	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169188534	169188534	+	Missense_Mutation	SNP	A	A	C	rs370192291	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon25	c.A2459C	p.Y820S	TCCTGTATGAGTT	.	52.0	20.0	77.0	0.0	.	389	.	.	Atlas-SNP
STC2	8614	hgsc.bcm.edu	hg19	5	172744894	172744894	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	STC2,lower_third,carcinoma,0,1	STC2	NM_003714	exon4	c.G865T	p.E289X	CCCACTCGCTGCT	.	49.0	22.0	76.0	2.0	.	59	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176637954	176637954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NSD1	NM_022455	exon5	c.A2554G	p.I852V	AGTGACATAGAAA	.	66.0	32.0	88.0	0.0	.	416	.	.	Atlas-SNP
SLC34A1	6569	hgsc.bcm.edu	hg19	5	176814993	176814993	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC34A1	NM_001167579	exon7	c.645-2A>T	.	CTGCCCAGGGCCT	.	48.0	27.0	69.0	0.0	.	73	.	.	Atlas-SNP
ZFP2	80108	hgsc.bcm.edu	hg19	5	178359135	178359135	+	Missense_Mutation	SNP	A	A	G	rs147320919	bycluster;byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP2	NM_030613	exon5	c.A821G	p.Q274R	GTAGTCAATGTGG	.	55.0	33.0	90.0	0.0	.	70	.	A|1.000;C|0.000	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	hg19	5	180037027	180037027	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	FLT4_ENST00000261937,NS,carcinoma,0,2	FLT4	NM_182925	exon29	c.3687-2A>T	.	AATACCTGTGGGG	.	47.0	17.0	62.0	1.0	.	356	.	.	Atlas-SNP
ZFP62	643836	hgsc.bcm.edu	hg19	5	180278100	180278100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP62	NM_001172638	exon2	c.A395T	p.Q132L	GTTTTCTGCTGTA	.	40.0	11.0	71.0	0.0	.	33	.	.	Atlas-SNP
TRIM41	90933	hgsc.bcm.edu	hg19	5	180661725	180661725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM41	NM_033549	exon6	c.C1843A	p.P615T	GTCTTTCCTTTCT	.	50.0	15.0	75.0	0.0	.	96	.	.	Atlas-SNP
PHACTR1	221692	hgsc.bcm.edu	hg19	6	12749960	12749960	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHACTR1	NM_030948	exon4	c.T188A	p.V63E	GGAGAGTGCGCTC	.	38.0	17.0	40.0	0.0	.	94	.	.	Atlas-SNP
PHACTR1	221692	hgsc.bcm.edu	hg19	6	13160509	13160509	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHACTR1	NM_030948	exon6	c.T489C	p.Y163Y	AATCTATGATAAA	.	88.0	24.0	67.0	0.0	.	94	.	.	Atlas-SNP
CCDC90A	63933	hgsc.bcm.edu	hg19	6	13791091	13791091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC90A	NM_001031713	exon9	c.A1030G	p.I344V	TAAATATAGACCC	.	218.0	92.0	190.0	0.0	.	15	.	.	Atlas-SNP
RNF144B	255488	hgsc.bcm.edu	hg19	6	18465185	18465185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF144B	NM_182757	exon8	c.A799G	p.I267V	TTGGGCATCATTG	.	135.0	64.0	118.0	0.0	.	18	.	.	Atlas-SNP
TRIM38	10475	hgsc.bcm.edu	hg19	6	25983702	25983702	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM38	NM_006355	exon8	c.A1185T	p.A395A	TGTAGCACTTACT	.	85.0	32.0	96.0	0.0	.	50	.	.	Atlas-SNP
HFE	3077	hgsc.bcm.edu	hg19	6	26091582	26091582	+	Silent	SNP	A	A	G	rs28934595	bycluster;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HFE	NM_139006	exon3	c.A381G	p.Q127Q	AATGCAAGAAGAC	.	176.0	81.0	150.0	0.0	.	37	.	.	Atlas-SNP
PGBD1	84547	hgsc.bcm.edu	hg19	6	28268678	28268678	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGBD1	NM_001184743	exon7	c.A1047G	p.R349R	AGCTCGAGTGAGT	.	91.0	48.0	92.0	0.0	.	106	.	.	Atlas-SNP
OR2J3	442186	hgsc.bcm.edu	hg19	6	29080029	29080029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2J3	NM_001005216	exon1	c.T362A	p.M121K	TGGTGATGTCCTA	.	133.0	55.0	143.0	0.0	.	53	.	.	Atlas-SNP
OR2J2	26707	hgsc.bcm.edu	hg19	6	29141976	29141976	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2J2	NM_030905	exon1	c.A564G	p.L188L	GCGTTTATCATGT	.	81.0	37.0	90.0	0.0	.	51	.	.	Atlas-SNP
OR12D3	81797	hgsc.bcm.edu	hg19	6	29343000	29343000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR12D3	NM_030959	exon1	c.A65T	p.Q22L	AAAGGCTGCAGCT	.	208.0	77.0	250.0	0.0	.	55	.	.	Atlas-SNP
OR10C1	442194	hgsc.bcm.edu	hg19	6	29408614	29408614	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10C1	NM_013941	exon1	c.C822A	p.S274S	GGTGTCCCTCTTC	.	81.0	35.0	90.0	0.0	.	58	.	.	Atlas-SNP
OR2H2	7932	hgsc.bcm.edu	hg19	6	29556136	29556136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2H2	NM_007160	exon1	c.T415G	p.C139G	CGCCTGTGCTGGC	.	66.0	39.0	97.0	0.0	.	29	.	.	Atlas-SNP
VARS2	57176	hgsc.bcm.edu	hg19	6	30892148	30892148	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VARS2	NM_001167734	exon26	c.G2574C	p.V858V	GCCCGTGCTGTGG	.	80.0	36.0	87.0	0.0	.	60	.	.	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30919181	30919181	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPCR1	NM_080870	exon2	c.T2940A	p.P980P	AGAGCCTACAGAA	.	70.0	36.0	62.0	0.0	.	99	.	.	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	hg19	6	30955029	30955029	+	Silent	SNP	A	A	T	rs41288693		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC21	NM_001010909	exon2	c.A1077T	p.T359T	CAGCACAGCCACC	.	35.0	13.0	29.0	0.0	.	98	.	.	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	hg19	6	31935153	31935153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SKIV2L	NM_006929	exon21	c.A2582T	p.Q861L	TCCTACAGGTGAG	.	108.0	46.0	83.0	0.0	.	97	.	.	Atlas-SNP
GPSM3	63940	hgsc.bcm.edu	hg19	6	32159648	32159648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPSM3	NM_022107	exon7	c.G183T	p.Q61H	TTCAGTCTGCAGG	.	106.0	21.0	105.0	0.0	.	9	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	hg19	6	33655094	33655094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPR3	NM_002224	exon45	c.T6167A	p.L2056Q	ATATCCTGGCGCT	.	55.0	28.0	51.0	0.0	.	409	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38816528	38816528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH8	NM_001206927	exon37	c.A5150G	p.Y1717C	GGGTTTATCTTGA	.	107.0	48.0	107.0	0.0	.	1239	.	.	Atlas-SNP
GLP1R	2740	hgsc.bcm.edu	hg19	6	39040694	39040694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLP1R	NM_002062	exon6	c.T566A	p.L189Q	TCATCCTGCGAGC	.	71.0	43.0	62.0	0.0	.	64	.	.	Atlas-SNP
UBR2	23304	hgsc.bcm.edu	hg19	6	42562032	42562032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBR2	NM_001184801	exon4	c.A521G	p.E174G	AAATTGAGGAAGA	.	96.0	31.0	92.0	0.0	.	134	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43155009	43155009	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CUL9	NM_015089	exon6	c.T1413A	p.P471P	GAATCCTATGGAT	.	86.0	35.0	72.0	0.0	.	248	.	.	Atlas-SNP
MEP1A	4224	hgsc.bcm.edu	hg19	6	46801092	46801092	+	Nonsense_Mutation	SNP	A	A	T	rs12197930	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEP1A	NM_005588	exon11	c.A1426T	p.R476X	AATAGCAGAGAAA	.	37.0	15.0	55.0	0.0	.	93	.	A|0.957;G|0.043	Atlas-SNP
DEFB113	245927	hgsc.bcm.edu	hg19	6	49937307	49937307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DEFB113	NM_001037729	exon1	c.T32C	p.V11A	GTGAAGACAAAGG	.	72.0	31.0	84.0	0.0	.	18	.	.	Atlas-SNP
TFAP2D	83741	hgsc.bcm.edu	hg19	6	50712859	50712859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TFAP2D	NM_172238	exon6	c.G923T	p.C308F	ACACTTGTGAAAC	.	203.0	91.0	179.0	0.0	.	144	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51890688	51890688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKHD1	NM_170724	exon32	c.A3920G	p.Q1307R	TCTCCTTGCATGG	.	96.0	44.0	97.0	0.0	.	927	.	.	Atlas-SNP
MCM3	4172	hgsc.bcm.edu	hg19	6	52129386	52129386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCM3	NM_002388	exon17	c.A2562T	p.X854C	GCCTCCTCAGATG	.	56.0	28.0	66.0	0.0	.	63	.	.	Atlas-SNP
HCRTR2	3062	hgsc.bcm.edu	hg19	6	55142234	55142234	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HCRTR2	NM_001526	exon5	c.A819G	p.S273S	TGTTTCACAGCCT	.	130.0	63.0	161.0	0.0	.	112	.	.	Atlas-SNP
ZNF451	26036	hgsc.bcm.edu	hg19	6	56993604	56993604	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF451	NM_001031623	exon5	c.A390T	p.A130A	AGCAGCAAGACTG	.	107.0	32.0	82.0	0.0	.	181	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	69348551	69348551	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BAI3	.	.	.	.	TTTTACAGGCCAA	.	60.0	26.0	80.0	0.0	.	451	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	69949085	69949085	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BAI3	NM_001704	exon20	c.C2781T	p.L927L	TATCCTCATACTG	.	89.0	35.0	98.0	0.0	.	451	.	.	Atlas-SNP
COL9A1	1297	hgsc.bcm.edu	hg19	6	70935655	70935655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A1	NM_001851	exon37	c.C2561A	p.P854H	GCTCCAGGCAAAC	.	66.0	36.0	83.0	0.0	.	228	.	.	Atlas-SNP
MYO6	4646	hgsc.bcm.edu	hg19	6	76576647	76576647	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO6	NM_004999	exon18	c.1771-2A>T	.	TTTTTCAGACCCA	.	64.0	35.0	63.0	0.0	.	124	.	.	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79770201	79770201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHIP	NM_017934	exon6	c.A433T	p.S145C	CAATGCTGGGTGG	.	52.0	22.0	62.0	0.0	.	177	.	.	Atlas-SNP
LCA5	167691	hgsc.bcm.edu	hg19	6	80223068	80223068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCA5	NM_001122769	exon3	c.G581T	p.S194I	AGTTCACTTTCTG	.	148.0	64.0	187.0	0.0	.	71	.	.	Atlas-SNP
C6orf165	154313	hgsc.bcm.edu	hg19	6	88128124	88128124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6orf165	NM_001031743	exon7	c.A830T	p.Q277L	TCCTTCAGATCAT	.	61.0	28.0	71.0	0.0	.	116	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90371171	90371171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MDN1	NM_014611	exon88	c.A14692G	p.T4898A	TGTCGGTGTCCTC	.	103.0	39.0	130.0	0.0	.	478	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90371808	90371808	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MDN1	NM_014611	exon87	c.G14563T	p.E4855X	TTACCTCATCTAT	.	64.0	29.0	60.0	0.0	.	478	.	.	Atlas-SNP
BACH2	60468	hgsc.bcm.edu	hg19	6	90661011	90661011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BACH2	NM_021813	exon7	c.A814T	p.R272W	GCCCCCTGGCAAG	.	44.0	24.0	55.0	0.0	.	224	.	.	Atlas-SNP
NDUFAF4	29078	hgsc.bcm.edu	hg19	6	97339048	97339048	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDUFAF4	NM_014165	exon3	c.A460T	p.K154X	AATATTTAAGAAG	.	48.0	15.0	59.0	0.0	.	16	.	.	Atlas-SNP
BVES	11149	hgsc.bcm.edu	hg19	6	105572512	105572512	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BVES	NM_001199563	exon5	c.A558T	p.R186R	ATGTCCTCGATAG	.	30.0	10.0	45.0	0.0	.	33	.	.	Atlas-SNP
BEND3	57673	hgsc.bcm.edu	hg19	6	107390413	107390413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BEND3	NM_001080450	exon5	c.A1982G	p.H661R	GGCACGTGGACCT	.	46.0	21.0	58.0	0.0	.	70	.	.	Atlas-SNP
CDC40	51362	hgsc.bcm.edu	hg19	6	110522886	110522886	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC40	NM_015891	exon3	c.A402G	p.T134T	TGCAACATATGGT	.	52.0	26.0	75.0	0.0	.	39	.	.	Atlas-SNP
KIAA1919	91749	hgsc.bcm.edu	hg19	6	111587672	111587672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1919	NM_153369	exon4	c.A907G	p.I303V	AGCAACATTGGCA	.	91.0	44.0	113.0	0.0	.	54	.	.	Atlas-SNP
ZUFSP	221302	hgsc.bcm.edu	hg19	6	116973312	116973312	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZUFSP	NM_145062	exon6	c.A1005T	p.T335T	CACATCTGTGGCA	.	75.0	23.0	97.0	0.0	.	46	.	.	Atlas-SNP
KPNA5	3841	hgsc.bcm.edu	hg19	6	117047735	117047735	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KPNA5	NM_002269	exon12	c.A1203T	p.A401A	AGAAGCAGCTTGG	.	134.0	63.0	216.0	0.0	.	57	.	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117114124	117114124	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPRC6A	NM_148963	exon6	c.A1962T	p.P654P	GTCTTGTGGTTCT	.	87.0	45.0	120.0	0.0	.	152	.	.	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117609770	117609770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROS1	NM_002944	exon43	c.A6929C	p.H2310P	TCTGCATGTGGTT	.	115.0	51.0	142.0	0.0	.	728	.	.	Atlas-SNP
C6orf170	221322	hgsc.bcm.edu	hg19	6	121447529	121447529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6orf170	NM_152730	exon26	c.A2978G	p.Y993C	CCTGTATACTCCA	.	48.0	27.0	62.0	0.0	.	146	.	.	Atlas-SNP
SOGA3	387104	hgsc.bcm.edu	hg19	6	127837007	127837007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001012279	exon2	c.A753T	p.K251N	TCCTTCTTTCCAG	.	38.0	19.0	27.0	0.0	.	.	.	.	Atlas-SNP
THEMIS	387357	hgsc.bcm.edu	hg19	6	128150865	128150865	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	THEMIS	NM_001010923	exon3	c.A465C	p.A155A	ATTCCTTGCTACT	.	74.0	33.0	109.0	0.0	.	168	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129498936	129498936	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon10	c.G1392T	p.P464P	CTACCCGGACTGC	.	110.0	47.0	149.0	0.0	.	481	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129618940	129618940	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon21	c.T2967A	p.P989P	CCAACCTGGAGTC	.	50.0	26.0	83.0	0.0	.	481	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129636779	129636779	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon25	c.A3714T	p.P1238P	ACTTCCAGAACAA	.	73.0	30.0	89.0	0.0	.	481	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129823895	129823895	+	Missense_Mutation	SNP	A	A	T	rs202202014	by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon59	c.A8336T	p.D2779V	CATTTGATGACAC	.	75.0	30.0	98.0	0.0	.	481	.	A|1.000;G|0.000	Atlas-SNP
SAMD3	154075	hgsc.bcm.edu	hg19	6	130497042	130497042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAMD3	NM_001017373	exon8	c.A766G	p.T256A	TCCTTGTCTGGCC	.	71.0	24.0	77.0	0.0	.	98	.	.	Atlas-SNP
SGK1	6446	hgsc.bcm.edu	hg19	6	134638546	134638546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGK1	NM_001143676	exon1	c.A53G	p.Q18R	AAAAATTGGAAGG	.	93.0	37.0	138.0	0.0	.	387	.	.	Atlas-SNP
BCLAF1	9774	hgsc.bcm.edu	hg19	6	136599666	136599666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	BCLAF1_ENST00000531224,NS,carcinoma,0,1	BCLAF1	NM_014739	exon4	c.G353A	p.R118K	ACGGATCTTCTTT	.	139.0	33.0	129.0	0.0	.	203	.	.	Atlas-SNP
SLC35D3	340146	hgsc.bcm.edu	hg19	6	137245642	137245642	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC35D3	NM_001008783	exon2	c.T1059A	p.G353G	AGCAGGTGGCCCC	.	39.0	14.0	51.0	0.0	.	33	.	.	Atlas-SNP
ECT2L	345930	hgsc.bcm.edu	hg19	6	139164260	139164260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ECT2L	NM_001195037	exon5	c.A487G	p.T163A	GCTGCTACTTATG	.	64.0	19.0	68.0	0.0	.	75	.	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	hg19	6	146276324	146276324	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHPRH	NM_173082	exon2	c.A135T	p.P45P	TGAACCTGGGCAG	.	35.0	14.0	55.0	0.0	.	169	.	.	Atlas-SNP
SASH1	23328	hgsc.bcm.edu	hg19	6	148848610	148848610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SASH1	NM_015278	exon12	c.T1306C	p.Y436H	TTTGTGTACAAAG	.	49.0	21.0	71.0	0.0	.	123	.	.	Atlas-SNP
ZBTB2	57621	hgsc.bcm.edu	hg19	6	151687080	151687080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZBTB2	NM_020861	exon3	c.A1121C	p.Q374P	CTTTTCTGGATAA	.	125.0	61.0	142.0	0.0	.	30	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152555815	152555815	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNE1	NM_182961	exon111	c.A20517G	p.L6839L	AGCATTTAGATGA	.	69.0	31.0	97.0	0.0	.	3227	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152831366	152831366	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNE1	NM_033071	exon8	c.G564A	p.K188K	AGCCTTCTTAGCA	.	101.0	9.0	129.0	0.0	.	3227	.	.	Atlas-SNP
MYCT1	80177	hgsc.bcm.edu	hg19	6	153043211	153043211	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCT1	NM_025107	exon2	c.T531A	p.P177P	ACTTCCTGTGGAA	.	77.0	32.0	85.0	0.0	.	48	.	.	Atlas-SNP
NOX3	50508	hgsc.bcm.edu	hg19	6	155776903	155776903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOX3	NM_015718	exon1	c.T32C	p.L11P	GTGGAGAGACCCT	.	84.0	35.0	95.0	0.0	.	93	.	.	Atlas-SNP
ARID1B	57492	hgsc.bcm.edu	hg19	6	157528624	157528624	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARID1B	NM_020732	exon20	c.A6349T	p.R2117W	TTAGTTAGGTACG	.	47.0	21.0	56.0	0.0	.	320	.	.	Atlas-SNP
TAGAP	117289	hgsc.bcm.edu	hg19	6	159463252	159463252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAGAP	NM_138810	exon5	c.T173G	p.L58R	CAGGACAGCACCT	.	105.0	39.0	131.0	0.0	.	75	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160469571	160469571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGF2R	NM_000876	exon18	c.A2510G	p.D837G	AAAAAGATCAGGT	.	49.0	19.0	70.0	0.0	.	251	.	.	Atlas-SNP
PLG	5340	hgsc.bcm.edu	hg19	6	161160115	161160115	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLG	NM_000301	exon16	c.A1893G	p.S631S	GCCTTCATCCTAC	.	121.0	48.0	104.0	0.0	.	150	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161523729	161523729	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP3K4	NM_006724	exon18	c.3626-2A>T	.	TCCTGCAGAACCA	.	307.0	149.0	396.0	0.0	.	364	.	.	Atlas-SNP
PDE10A	10846	hgsc.bcm.edu	hg19	6	165863831	165863831	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDE10A	NM_001130690	exon4	c.A245C	p.Q82P	ACTCCCTGCATAT	.	75.0	26.0	81.0	0.0	.	154	.	.	Atlas-SNP
T	6862	hgsc.bcm.edu	hg19	6	166578331	166578331	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	T	NM_003181	exon5	c.A625T	p.K209X	TGTACTTAATTTT	.	59.0	34.0	108.0	0.0	.	77	.	.	Atlas-SNP
CCR6	1235	hgsc.bcm.edu	hg19	6	167550197	167550197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCR6	NM_004367	exon3	c.C479A	p.T160K	CCAGAACACTACC	.	58.0	18.0	78.0	0.0	.	36	.	.	Atlas-SNP
SNX8	29886	hgsc.bcm.edu	hg19	7	2317782	2317782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNX8	NM_013321	exon2	c.A253G	p.K85E	CCTTCTTCTCCGG	.	64.0	25.0	76.0	0.0	.	46	.	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2983944	2983944	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CARD11	NM_032415	exon5	c.A586T	p.K196X	TCACCTTGACCAG	.	99.0	45.0	127.0	0.0	.	339	.	.	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	hg19	7	2987406	2987406	+	Missense_Mutation	SNP	A	A	C	rs368132142		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CARD11	NM_032415	exon3	c.T23G	p.M8R	TCATCCATCTCTG	.	103.0	45.0	102.0	0.0	.	339	.	.	Atlas-SNP
FOXK1	221937	hgsc.bcm.edu	hg19	7	4794986	4794986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOXK1	NM_001037165	exon4	c.A1022G	p.Y341C	ACCCCTACTACCG	.	99.0	29.0	105.0	0.0	.	64	.	.	Atlas-SNP
SLC29A4	222962	hgsc.bcm.edu	hg19	7	5336593	5336593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC29A4	NM_153247	exon7	c.A646G	p.S216G	TCTCTGAGCCGCA	.	24.0	10.0	18.0	0.0	.	52	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5410083	5410083	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNRC18	NM_001080495	exon11	c.A4142C	p.Q1381P	AAGCTCTGCTCCA	.	47.0	20.0	51.0	0.0	.	311	.	.	Atlas-SNP
USP42	84132	hgsc.bcm.edu	hg19	7	6183734	6183734	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP42	NM_032172	exon9	c.A897T	p.P299P	GGTTCCAGCTTCA	.	64.0	25.0	73.0	0.0	.	138	.	.	Atlas-SNP
GRID2IP	392862	hgsc.bcm.edu	hg19	7	6560210	6560210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRID2IP	NM_001145118	exon7	c.A1267T	p.R423W	GCCACCTGTGCTG	.	67.0	28.0	65.0	0.0	.	82	.	.	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7530242	7530242	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL28A1	NM_001037763	exon12	c.A1062T	p.P354P	AGCTCCTGGAGAA	.	87.0	39.0	62.0	0.0	.	113	.	.	Atlas-SNP
MIOS	54468	hgsc.bcm.edu	hg19	7	7612424	7612424	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIOS	NM_019005	exon4	c.A318G	p.K106K	AGGAAAAGAGTTT	.	89.0	36.0	87.0	0.0	.	68	.	.	Atlas-SNP
ICA1	3382	hgsc.bcm.edu	hg19	7	8167517	8167517	+	Missense_Mutation	SNP	T	T	A	rs368311237	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ICA1	NM_022307	exon13	c.A1316T	p.Q439L	GAGGCCTGTAAGT	.	58.0	29.0	68.0	0.0	.	65	.	.	Atlas-SNP
FERD3L	222894	hgsc.bcm.edu	hg19	7	19184845	19184845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FERD3L	NM_152898	exon1	c.A141T	p.R47R	TCCCTCTCGGAGC	.	37.0	18.0	44.0	0.0	.	63	.	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	hg19	7	20193914	20193914	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MACC1	NM_182762	exon6	c.T2248A	p.W750R	CCCTCCAGCCTTT	.	99.0	46.0	94.0	0.0	.	99	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20683101	20683101	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCB5	NM_001163941	exon7	c.G524C	p.S175T	AAATCAGTGATGG	.	96.0	11.0	102.0	0.0	.	357	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20778743	20778743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCB5	NM_001163941	exon24	c.G3005T	p.S1002I	GCCGCAGTCAAGA	.	70.0	25.0	54.0	0.0	.	357	.	.	Atlas-SNP
DNAH11	8701	hgsc.bcm.edu	hg19	7	21630534	21630534	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH11	NM_001277115	exon13	c.2170-2A>T	.	TTTAATAGCTAGT	.	194.0	99.0	236.0	0.0	.	584	.	.	Atlas-SNP
HOXA13	3209	hgsc.bcm.edu	hg19	7	27238961	27238961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXA13	NM_000522	exon1	c.A736G	p.M246V	CAGGCATGGGCTG	.	83.0	36.0	74.0	0.0	.	25	.	.	Atlas-SNP
TAX1BP1	8887	hgsc.bcm.edu	hg19	7	27833956	27833956	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAX1BP1	NM_006024	exon11	c.T1425C	p.N475N	TAATAATGTCTTC	.	221.0	94.0	224.0	0.0	.	71	.	.	Atlas-SNP
CPVL	54504	hgsc.bcm.edu	hg19	7	29103852	29103852	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CPVL	NM_019029	exon12	c.964-2A>T	.	GGTTCCTGGCAGA	.	72.0	30.0	65.0	0.0	.	60	.	.	Atlas-SNP
WIPF3	644150	hgsc.bcm.edu	hg19	7	29915478	29915478	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WIPF3	NM_001080529	exon3	c.A123C	p.A41A	AAGGGCAGATCCG	.	168.0	69.0	251.0	0.0	.	46	.	.	Atlas-SNP
CRHR2	1395	hgsc.bcm.edu	hg19	7	30739585	30739585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRHR2	NM_001202475	exon1	c.G65A	p.C22Y	AGGAGGCAGAGCA	.	39.0	17.0	63.0	0.0	.	104	.	.	Atlas-SNP
PPP1R17	10842	hgsc.bcm.edu	hg19	7	31732116	31732116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_006658	exon2	c.G61T	p.D21Y	AAGCTAGACCCTC	.	90.0	40.0	87.0	0.0	.	.	.	.	Atlas-SNP
BMPER	168667	hgsc.bcm.edu	hg19	7	33976943	33976943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BMPER	NM_133468	exon4	c.T262C	p.S88P	GTGCTGTCCCGAG	.	61.0	25.0	106.0	0.0	.	131	.	.	Atlas-SNP
HERPUD2	64224	hgsc.bcm.edu	hg19	7	35733822	35733822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HERPUD2	NM_022373	exon2	c.A119T	p.H40L	GATAGATGCGTTT	.	59.0	33.0	73.0	0.0	.	47	.	.	Atlas-SNP
ANLN	54443	hgsc.bcm.edu	hg19	7	36436005	36436005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANLN	NM_018685	exon2	c.A149T	p.Q50L	GTAACCAGCAGCC	.	143.0	69.0	187.0	0.0	.	101	.	.	Atlas-SNP
AMPH	273	hgsc.bcm.edu	hg19	7	38500915	38500915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AMPH	NM_139316	exon11	c.G985T	p.V329F	CTGGAACAAAGTT	.	75.0	37.0	73.0	0.0	.	157	.	.	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	hg19	7	45632453	45632453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY1	NM_021116	exon2	c.G735T	p.Q245H	CCTGCAGGCCCGG	.	124.0	62.0	111.0	0.0	.	187	.	.	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	hg19	7	45717819	45717819	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY1	NM_021116	exon10	c.C1855T	p.L619L	CTCATCCTGGCTG	.	114.0	48.0	105.0	0.0	.	187	.	.	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	hg19	7	47408179	47408179	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNS3	NM_022748	exon17	c.A2064T	p.P688P	CGAGCCTGGGGAG	.	38.0	13.0	57.0	0.0	.	140	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47870899	47870899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L1	NM_138295	exon42	c.A6389C	p.Q2130P	CAAGGCTGAAGGG	.	118.0	50.0	125.0	0.0	.	328	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47970705	47970705	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L1	NM_138295	exon6	c.A733T	p.R245X	ACCTTCTGGGAGA	.	48.0	22.0	52.0	0.0	.	328	.	.	Atlas-SNP
HUS1	3364	hgsc.bcm.edu	hg19	7	48008897	48008897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HUS1	NM_004507	exon6	c.G559T	p.D187Y	CTCCATCTAGGTT	.	40.0	16.0	42.0	0.0	.	36	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48314790	48314790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon17	c.G5527T	p.V1843F	TGCAATGTCCATG	.	66.0	27.0	84.0	0.0	.	1192	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48412076	48412076	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon33	c.T11115C	p.F3705F	AAGTTTTGTTAAT	.	53.0	21.0	48.0	0.0	.	1192	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48431709	48431709	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon38	c.A11846T	p.K3949M	GGACCAAGAAGGA	.	126.0	53.0	127.0	0.0	.	1192	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48528889	48528889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon48	c.C13239A	p.N4413K	TCTAAACAACCTT	.	169.0	62.0	205.0	0.0	.	1192	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48559635	48559635	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon53	c.13798-2A>T	.	CTGTGCAGAATTT	.	39.0	10.0	62.0	0.0	.	1192	.	.	Atlas-SNP
IKZF1	10320	hgsc.bcm.edu	hg19	7	50450343	50450343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IKZF1	NM_006060	exon5	c.A527T	p.H176L	AATGCCACCTCTG	.	21.0	14.0	17.0	0.0	.	613	.	.	Atlas-SNP
COBL	23242	hgsc.bcm.edu	hg19	7	51095619	51095619	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COBL	NM_015198	exon10	c.A3174C	p.T1058T	GCTTTCTGTGCCA	.	138.0	66.0	174.0	0.0	.	167	.	.	Atlas-SNP
ZNF727	442319	hgsc.bcm.edu	hg19	7	63529267	63529267	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF727	NM_001159522	exon2	c.4-2A>T	.	TTTTTCAGCGAGT	.	49.0	23.0	59.0	0.0	.	35	.	.	Atlas-SNP
ZNF727	442319	hgsc.bcm.edu	hg19	7	63538686	63538686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF727	NM_001159522	exon4	c.A1259T	p.E420V	ATATGGAAGTGAG	.	130.0	66.0	132.0	0.0	.	35	.	.	Atlas-SNP
ZNF736	728927	hgsc.bcm.edu	hg19	7	63808697	63808697	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF736	NM_001170905	exon5	c.A456G	p.R152R	TGGCAGAGGTTTT	.	37.0	18.0	39.0	0.0	.	33	.	.	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	hg19	7	70885934	70885934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	WBSCR17,right_upper_lobe,carcinoma,0,1	WBSCR17	NM_022479	exon5	c.C805T	p.R269C	CGGAAGCGTGTGA	.	98.0	54.0	97.0	0.0	.	208	.	.	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	hg19	7	71036347	71036347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WBSCR17	NM_022479	exon6	c.T1040G	p.M347R	CTGGCATGGATGT	.	81.0	41.0	99.0	0.0	.	208	.	.	Atlas-SNP
WBSCR27	155368	hgsc.bcm.edu	hg19	7	73254767	73254767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WBSCR27	NM_152559	exon4	c.A365T	p.Q122L	GGCTCCTGGCCCA	.	83.0	37.0	111.0	0.0	.	21	.	.	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	hg19	7	75192502	75192502	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIP1	NM_005338	exon10	c.A869T	p.Q290L	GGCAGCTGGGGGA	.	72.0	31.0	74.0	0.0	.	91	.	.	Atlas-SNP
PHTF2	57157	hgsc.bcm.edu	hg19	7	77567113	77567113	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHTF2	NM_001127357	exon11	c.A1323T	p.A441A	GAAAGCAGACATG	.	276.0	119.0	289.0	0.0	.	104	.	.	Atlas-SNP
SEMA3C	10512	hgsc.bcm.edu	hg19	7	80457899	80457899	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3C	NM_006379	exon4	c.264+2T>C	.	AAACTTACACTCA	.	127.0	49.0	130.0	0.0	.	106	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82764680	82764680	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	Q9Y6V0-3,NS,carcinoma,0,3	PCLO	NM_014510	exon3	c.T2186A	p.L729X	TTGGACAAAGAAT	.	90.0	36.0	103.0	0.0	.	1506	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82764790	82764790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCLO	NM_014510	exon3	c.G2076T	p.Q692H	GAGATCCTGTTTT	.	95.0	45.0	114.0	0.0	.	1506	.	.	Atlas-SNP
KIAA1324L	222223	hgsc.bcm.edu	hg19	7	86571334	86571334	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1324L	NM_001142749	exon5	c.T741C	p.S247S	ACTTACAGAATGA	.	85.0	34.0	106.0	0.0	.	225	.	.	Atlas-SNP
C7orf63	79846	hgsc.bcm.edu	hg19	7	89917620	89917620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C7orf63	NM_001039706	exon15	c.G1729T	p.G577C	CAGAGTGGCTTAG	.	94.0	34.0	116.0	0.0	.	158	.	.	Atlas-SNP
C7orf63	79846	hgsc.bcm.edu	hg19	7	89936396	89936396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C7orf63	NM_001039706	exon20	c.A2447G	p.Q816R	ATGAACAAAAAGT	.	135.0	54.0	133.0	0.0	.	158	.	.	Atlas-SNP
AKAP9	10142	hgsc.bcm.edu	hg19	7	91724335	91724335	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP9	NM_005751	exon40	c.9579-2A>T	.	TGACTTAGGTTGG	.	60.0	29.0	85.0	0.0	.	788	.	.	Atlas-SNP
LRRD1	401387	hgsc.bcm.edu	hg19	7	91792827	91792827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRD1	NM_001161528	exon1	c.T1690G	p.C564G	TACAGCATAAAAT	.	177.0	79.0	200.0	0.0	.	35	.	.	Atlas-SNP
LRRD1	401387	hgsc.bcm.edu	hg19	7	91794336	91794336	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRD1	NM_001161528	exon1	c.A181T	p.R61X	TCTGTCTAGGATG	.	76.0	31.0	91.0	0.0	.	35	.	.	Atlas-SNP
RBM48	84060	hgsc.bcm.edu	hg19	7	92158171	92158171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032120	exon1	c.A44T	p.H15L	ATCACCACGTCCA	.	108.0	50.0	131.0	0.0	.	.	.	.	Atlas-SNP
SAMD9L	219285	hgsc.bcm.edu	hg19	7	92763730	92763730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAMD9L	NM_152703	exon5	c.A1555G	p.R519G	TTTCTCTCTGCCA	.	55.0	25.0	65.0	0.0	.	227	.	.	Atlas-SNP
PON3	5446	hgsc.bcm.edu	hg19	7	95023973	95023973	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PON3	NM_000940	exon2	c.A128T	p.H43L	ATAAGGTGGCAGT	.	81.0	44.0	109.0	0.0	.	59	.	.	Atlas-SNP
ARPC1A	10552	hgsc.bcm.edu	hg19	7	98946489	98946489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARPC1A	NM_006409	exon5	c.A407G	p.H136R	GCAAGCACATTAA	.	158.0	84.0	155.0	0.0	.	38	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99097607	99097607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF394	NM_032164	exon1	c.T110C	p.L37S	ACGGGCAAAAGTC	.	33.0	15.0	25.0	0.0	.	48	.	.	Atlas-SNP
NYAP1	222950	hgsc.bcm.edu	hg19	7	100086259	100086259	+	Silent	SNP	A	A	T	rs140403396	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_173564	exon4	c.A915T	p.S305S	AGCTTCAGCCCTC	.	57.0	30.0	69.0	0.0	.	.	.	A|0.998;C|0.002	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100674961	100674961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC17	NM_001040105	exon3	c.C264A	p.N88K	CACCAACCCTGAG	.	113.0	61.0	116.0	0.0	.	804	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100685847	100685847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC17	NM_001040105	exon3	c.C11150A	p.P3717H	CAACACCTTCTGT	.	29.0	12.0	32.0	0.0	.	804	.	.	Atlas-SNP
TMEM168	64418	hgsc.bcm.edu	hg19	7	112407617	112407617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM168	NM_022484	exon5	c.A1729G	p.I577V	CTTCAATATCTAC	.	84.0	27.0	122.0	0.0	.	84	.	.	Atlas-SNP
GPR85	54329	hgsc.bcm.edu	hg19	7	112724069	112724069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR85	NM_001146265	exon3	c.T708A	p.S236R	CTGGCCACTGGCT	.	55.0	23.0	72.0	0.0	.	49	.	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	hg19	7	113519017	113519017	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP1R3A	NM_002711	exon4	c.C2130A	p.C710X	TTCACAGCACACT	.	54.0	27.0	76.0	0.0	.	317	.	.	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	hg19	7	113520088	113520088	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP1R3A	NM_002711	exon4	c.A1059T	p.A353A	CCCCTCTGCTTTA	.	137.0	63.0	135.0	0.0	.	317	.	.	Atlas-SNP
NAA38	51691	hgsc.bcm.edu	hg19	7	117828430	117828430	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAA38	NM_016200	exon3	c.A171T	p.L57L	GGTACTAGGATTA	.	62.0	24.0	67.0	0.0	.	16	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121684539	121684539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRZ1	NM_002851	exon23	c.C6001A	p.L2001M	GAGGTGCTGGACA	.	81.0	38.0	70.0	0.0	.	605	.	.	Atlas-SNP
RNF148	378925	hgsc.bcm.edu	hg19	7	122342188	122342188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF148	NM_198085	exon1	c.A617G	p.Y206C	TCTAAGTAAAAGT	.	44.0	23.0	41.0	0.0	.	71	.	.	Atlas-SNP
SPAM1	6677	hgsc.bcm.edu	hg19	7	123593884	123593884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPAM1	NM_153189	exon3	c.G260T	p.G87V	GGCAAGGTGTTAC	.	89.0	43.0	104.0	0.0	.	195	.	.	Atlas-SNP
PAX4	5078	hgsc.bcm.edu	hg19	7	127251726	127251726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAX4	NM_006193	exon8	c.C752A	p.S251Y	CCAGGGGACTGCT	.	22.0	12.0	27.0	0.0	.	66	.	.	Atlas-SNP
LRRC4	64101	hgsc.bcm.edu	hg19	7	127670231	127670231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC4	NM_022143	exon2	c.C463T	p.R155C	TGTTGCGAAGCCA	.	41.0	17.0	61.0	0.0	.	72	.	.	Atlas-SNP
CCDC136	64753	hgsc.bcm.edu	hg19	7	128449649	128449649	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC136	NM_022742	exon11	c.A1751T	p.E584V	AGGAAGAGCTGCA	.	118.0	60.0	149.0	0.0	.	170	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128488063	128488063	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLNC	NM_001127487	exon26	c.A4521T	p.P1507P	CACCCCAGCCACT	.	138.0	50.0	152.0	0.0	.	339	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128494857	128494857	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLNC	NM_001458	exon42	c.T7026A	p.A2342A	GGAGGCTGGCGCT	.	56.0	24.0	66.0	0.0	.	339	.	.	Atlas-SNP
SSMEM1	0	hgsc.bcm.edu	hg19	7	129847933	129847933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_145268	exon1	c.G183T	p.W61C	TGTCTGGGTAGGA	.	70.0	37.0	57.0	0.0	.	.	.	.	Atlas-SNP
CALD1	800	hgsc.bcm.edu	hg19	7	134613624	134613624	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CALD1	NM_033157	exon4	c.A191T	p.D64V	TGACCGACCAGGT	.	85.0	40.0	95.0	0.0	.	150	.	.	Atlas-SNP
SLC13A4	26266	hgsc.bcm.edu	hg19	7	135378973	135378973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC13A4	NM_012450	exon10	c.T1030A	p.C344S	GAGAGCAGGTCTC	.	53.0	29.0	31.0	0.0	.	56	.	.	Atlas-SNP
CHRM2	1129	hgsc.bcm.edu	hg19	7	136700927	136700927	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHRM2	NM_001006632	exon3	c.T1315A	p.C439S	CCTGCCTGCTATG	.	148.0	63.0	163.0	0.0	.	167	.	.	Atlas-SNP
DGKI	9162	hgsc.bcm.edu	hg19	7	137170144	137170144	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DGKI	NM_004717	exon24	c.T2403A	p.S801S	GGAGCCAGAAGAA	.	190.0	97.0	237.0	0.0	.	335	.	.	Atlas-SNP
ZC3HAV1	56829	hgsc.bcm.edu	hg19	7	138749665	138749665	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZC3HAV1	NM_024625	exon8	c.A1953G	p.P651P	CTGAAATGGCACA	.	72.0	36.0	58.0	0.0	.	75	.	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	hg19	7	140301960	140301960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND2A	NM_015689	exon1	c.G238T	p.V80L	TCTCCACCGTAGA	.	159.0	66.0	207.0	0.0	.	132	.	.	Atlas-SNP
DENND2A	27147	hgsc.bcm.edu	hg19	7	140301961	140301961	+	Silent	SNP	C	C	A	rs368178368	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND2A	NM_015689	exon1	c.G237T	p.T79T	CTCCACCGTAGAG	.	160.0	67.0	209.0	0.0	.	132	.	.	Atlas-SNP
PRSS58	136541	hgsc.bcm.edu	hg19	7	141952141	141952141	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRSS58	NM_001001317	exon6	c.T626G	p.L209R	AAAGACAGGATTC	.	119.0	45.0	123.0	0.0	.	41	.	.	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	hg19	7	142612494	142612494	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.,1	TRPV5	NM_019841	exon10	c.G1269T	p.G423G	GAATGGCCCCCCA	.	188.0	83.0	264.0	0.0	.	164	.	.	Atlas-SNP
FAM131B	9715	hgsc.bcm.edu	hg19	7	143054107	143054107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	FAM131B_ENST00000443739,NS,carcinoma,0,2	FAM131B	NM_001031690	exon7	c.G619T	p.A207S	CTTGAGCCAGGGC	.	99.0	44.0	132.0	0.0	.	104	.	.	Atlas-SNP
NOM1	64434	hgsc.bcm.edu	hg19	7	156742760	156742760	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOM1	NM_138400	exon1	c.T329A	p.L110Q	CCGGCCTGGGAGG	.	19.0	10.0	4.0	0.0	.	73	.	.	Atlas-SNP
DNAJB6	10049	hgsc.bcm.edu	hg19	7	157160147	157160147	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJB6	NM_058246	exon5	c.G316T	p.G106X	TTTGGTGGAAGGG	.	59.0	29.0	75.0	0.0	.	39	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2823327	2823327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon59	c.A9250T	p.R3084W	TCCACCTGCCGTC	.	61.0	43.0	134.0	0.0	.	1469	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2944651	2944651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon49	c.A7442T	p.Y2481F	CACTGGTACATGC	.	17.0	14.0	64.0	0.0	.	1469	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2964161	2964161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon46	c.G6838T	p.D2280Y	CAAAATCTCCTAG	.	49.0	38.0	121.0	0.0	.	1469	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	3216815	3216815	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon21	c.C3163A	p.R1055R	TTCTTCGGCTGAA	.	59.0	48.0	110.0	0.0	.	1469	.	.	Atlas-SNP
USP17L1P	401447	hgsc.bcm.edu	hg19	8	7190945	7190945	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001256873	exon1	c.G1037C	p.W346S	TCCAGTGGTATAA	.	86.0	71.0	88.0	0.0	.	.	.	.	Atlas-SNP
KIAA1967	57805	hgsc.bcm.edu	hg19	8	22476767	22476767	+	Missense_Mutation	SNP	C	C	G	rs201420827	bycluster;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1967	NM_021174	exon20	c.C2626G	p.R876G	ACCGCCCGGACGG	.	28.0	11.0	58.0	0.0	.	72	.	C|1.000;T|0.000	Atlas-SNP
ADAM7	8756	hgsc.bcm.edu	hg19	8	24346837	24346837	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM7	NM_003817	exon12	c.C1257T	p.G419G	CTGTGGCCCTGCT	.	32.0	24.0	53.0	0.0	.	165	.	.	Atlas-SNP
ZNF395	55893	hgsc.bcm.edu	hg19	8	28206270	28206270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF395	NM_018660	exon10	c.G1508A	p.R503Q	TTCCACCGGCAGG	.	24.0	24.0	91.0	0.0	.	54	.	.	Atlas-SNP
UNC5D	137970	hgsc.bcm.edu	hg19	8	35631946	35631946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UNC5D	NM_080872	exon16	c.G2608T	p.A870S	CCCAATGCCAAAG	.	58.0	47.0	103.0	0.0	.	393	.	.	Atlas-SNP
IDO1	3620	hgsc.bcm.edu	hg19	8	39785506	39785506	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IDO1	NM_002164	exon10	c.T1014A	p.A338A	GAAAGCTCTGGTC	.	95.0	48.0	140.0	0.0	.	43	.	.	Atlas-SNP
C8orf4	56892	hgsc.bcm.edu	hg19	8	40011185	40011185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C8orf4	NM_020130	exon1	c.A134C	p.Q45P	CAGACCAAGAATC	.	70.0	39.0	102.0	0.0	.	7	.	.	Atlas-SNP
ANK1	286	hgsc.bcm.edu	hg19	8	41519015	41519015	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK1	NM_000037	exon42	c.A5612T	p.K1871M	GCCCGCTTCACTA	.	44.0	16.0	44.0	0.0	.	497	.	.	Atlas-SNP
MOS	4342	hgsc.bcm.edu	hg19	8	57026368	57026368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MOS	NM_005372	exon1	c.G174T	p.E58D	CACCTGCTCCCAG	.	52.0	28.0	66.0	0.0	.	63	.	.	Atlas-SNP
NSMAF	8439	hgsc.bcm.edu	hg19	8	59498516	59498516	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NSMAF	NM_001144772	exon29	c.T2583C	p.N861N	AATGACATTAAGA	.	64.0	21.0	77.0	0.0	.	156	.	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	hg19	8	72983964	72983964	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPA1	NM_007332	exon2	c.A250T	p.R84X	AATCTCTGGTGAT	.	69.0	27.0	73.0	0.0	.	256	.	.	Atlas-SNP
SLC7A13	157724	hgsc.bcm.edu	hg19	8	87229922	87229922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC7A13	NM_138817	exon3	c.A956T	p.Q319L	CCCTCTTGGCTTG	.	116.0	55.0	134.0	0.0	.	97	.	.	Atlas-SNP
CNBD1	168975	hgsc.bcm.edu	hg19	8	88365947	88365947	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNBD1	NM_173538	exon10	c.T1236G	p.P412P	AGTTCCTTTCACG	.	451.0	189.0	516.0	0.0	.	206	.	.	Atlas-SNP
NBN	4683	hgsc.bcm.edu	hg19	8	90995076	90995076	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBN	NM_002485	exon2	c.A45G	p.P15P	TCTGTATGGTTCT	.	89.0	41.0	114.0	0.0	.	86	.	.	Atlas-SNP
SLC26A7	115111	hgsc.bcm.edu	hg19	8	92401631	92401631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A7	NM_134266	exon16	c.T1741A	p.F581I	TTTACCTTTTTTG	.	71.0	34.0	113.0	0.0	.	207	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	92983058	92983058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RUNX1T1	NM_001198679	exon11	c.T1544A	p.V515E	CGCTTCACCTCAT	.	32.0	14.0	36.0	0.0	.	516	.	.	Atlas-SNP
RUNX1T1	862	hgsc.bcm.edu	hg19	8	92998408	92998408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	RUNX1T1_ENST00000436581,NS,carcinoma,0,3	RUNX1T1	NM_001198679	exon9	c.G1400A	p.S467N	CTGCTACTGCCGC	.	73.0	27.0	88.0	0.0	.	516	.	.	Atlas-SNP
TMEM67	91147	hgsc.bcm.edu	hg19	8	94798504	94798504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM67	NM_153704	exon13	c.G1342A	p.V448I	GATGCAGTAAGTG	.	55.0	20.0	51.0	0.0	.	187	.	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95501074	95501074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1429	NM_015496	exon24	c.C5299A	p.P1767T	CCCGAGGACTTGG	.	66.0	35.0	109.0	0.0	.	176	.	.	Atlas-SNP
CCNE2	9134	hgsc.bcm.edu	hg19	8	95906153	95906153	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCNE2	NM_057749	exon4	c.A131T	p.E44V	ACCTCCTCTCTTC	.	118.0	46.0	151.0	0.0	.	29	.	.	Atlas-SNP
RNF19A	25897	hgsc.bcm.edu	hg19	8	101287279	101287279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF19A	NM_015435	exon4	c.A785T	p.Q262L	CAGGTCTGGTTGG	.	112.0	55.0	128.0	0.0	.	67	.	.	Atlas-SNP
GRHL2	79977	hgsc.bcm.edu	hg19	8	102611327	102611327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRHL2	NM_024915	exon8	c.A1046G	p.E349G	TTGAAGAGATTGC	.	71.0	29.0	69.0	0.0	.	68	.	.	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	hg19	8	104924293	104924293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RIMS2	NM_001100117	exon6	c.T1705G	p.W569G	GTAACCTGGCAAC	.	57.0	26.0	53.0	0.0	.	1357	.	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	hg19	8	106813460	106813460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFPM2	NM_012082	exon8	c.C1150A	p.L384I	CAGGAGCTCCATG	.	106.0	48.0	137.0	0.0	.	219	.	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	hg19	8	106813461	106813461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFPM2	NM_012082	exon8	c.T1151C	p.L384P	AGGAGCTCCATGT	.	105.0	48.0	137.0	0.0	.	219	.	.	Atlas-SNP
OXR1	55074	hgsc.bcm.edu	hg19	8	107691475	107691475	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXR1	NM_001198532	exon3	c.A261G	p.G87G	AGATGGAAGACGA	.	137.0	60.0	184.0	0.0	.	190	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113237150	113237150	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CSMD3_ENST00000343508,NS,carcinoma,0,2	CSMD3	NM_198123	exon71	c.T10974A	p.P3658P	TGTTTTAGGTGCA	.	102.0	32.0	105.0	0.0	.	2325	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113702110	113702110	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD3	NM_198123	exon14	c.A2142T	p.I714I	GATGGGTATGTTT	.	89.0	43.0	99.0	0.0	.	2325	.	.	Atlas-SNP
TNFRSF11B	4982	hgsc.bcm.edu	hg19	8	119936998	119936998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNFRSF11B	NM_002546	exon5	c.T821A	p.I274N	AGGTCAATATCTG	.	58.0	31.0	80.0	0.0	.	87	.	.	Atlas-SNP
ENPP2	5168	hgsc.bcm.edu	hg19	8	120594814	120594814	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ENPP2	NM_006209	exon19	c.T1728C	p.N576N	CCCATTATTAGGA	.	89.0	34.0	63.0	0.0	.	254	.	.	Atlas-SNP
KLHL38	340359	hgsc.bcm.edu	hg19	8	124664565	124664565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL38	NM_001081675	exon1	c.T602C	p.M201T	CAAACCATGAGGG	.	80.0	36.0	88.0	0.0	.	81	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	124987506	124987506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L6	NM_001039112	exon8	c.A643T	p.T215S	TTGAAGACCAGCC	.	216.0	95.0	323.0	0.0	.	268	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	124998413	124998413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L6	NM_001039112	exon12	c.A1516G	p.I506V	GTTTCTATTGGTA	.	60.0	19.0	72.0	0.0	.	268	.	.	Atlas-SNP
ASAP1	50807	hgsc.bcm.edu	hg19	8	131130809	131130809	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASAP1	NM_018482	exon19	c.A1720T	p.R574W	AATCCCTGGATTT	.	87.0	36.0	112.0	0.0	.	133	.	.	Atlas-SNP
TRAPPC9	83696	hgsc.bcm.edu	hg19	8	140898164	140898164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAPPC9	NM_031466	exon21	c.A3308C	p.Q1103P	ACGAGCTGGTTCA	.	208.0	101.0	257.0	1.0	.	114	.	.	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	hg19	8	142185462	142185462	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND3	NM_014957	exon14	c.A2199T	p.L733L	AAACCTAGGCGTT	.	76.0	32.0	102.0	0.0	.	127	.	.	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	hg19	8	142188201	142188201	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND3	NM_014957	exon16	c.C2502A	p.V834V	CAACGTCTTGCTG	.	38.0	25.0	51.0	0.0	.	127	.	.	Atlas-SNP
TSNARE1	203062	hgsc.bcm.edu	hg19	8	143425368	143425368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TSNARE1	NM_145003	exon4	c.A704C	p.Q235P	AGGGCCTGGCAAG	.	71.0	26.0	79.0	0.0	.	59	.	.	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	hg19	8	144808647	144808647	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM83H	NM_198488	exon5	c.A2984T	p.Q995L	TCGGGTTGGCCGT	.	27.0	13.0	31.0	0.0	.	68	.	.	Atlas-SNP
SLC52A2	79581	hgsc.bcm.edu	hg19	8	145584307	145584307	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_024531	exon4	c.G1059A	p.L353L	CTACCTGATGGCG	.	18.0	10.0	18.0	0.0	.	.	.	.	Atlas-SNP
RANBP6	26953	hgsc.bcm.edu	hg19	9	6012662	6012662	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RANBP6	NM_012416	exon1	c.A2946T	p.S982S	TATTGCTGAGATA	.	77.0	8.0	171.0	0.0	.	127	.	.	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	hg19	9	7046860	7046860	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KDM4C	NM_001146696	exon16	c.2326-2A>T	.	CCCCCCAGGAATG	.	29.0	27.0	90.0	0.0	.	186	.	.	Atlas-SNP
PTPRD	5789	hgsc.bcm.edu	hg19	9	8486105	8486105	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRD	NM_002839	exon28	c.G2712A	p.G904G	CTCCTCCCCAAAG	.	115.0	59.0	108.0	0.0	.	1348	.	.	Atlas-SNP
CER1	9350	hgsc.bcm.edu	hg19	9	14722169	14722169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CER1	NM_005454	exon1	c.A502T	p.S168C	CCTGGCTGAAGGG	.	67.0	31.0	72.0	0.0	.	41	.	.	Atlas-SNP
SNAPC3	6619	hgsc.bcm.edu	hg19	9	15447091	15447091	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNAPC3	NM_001039697	exon5	c.583-2A>T	.	ACTTTTAGCACAA	.	132.0	57.0	121.0	0.0	.	28	.	.	Atlas-SNP
BNC2	54796	hgsc.bcm.edu	hg19	9	16437127	16437127	+	Silent	SNP	G	G	T	rs183551262	bycluster;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BNC2	NM_017637	exon6	c.C1065A	p.P355P	AAGGCTGGGTTCC	.	110.0	38.0	110.0	0.0	.	166	.	G|1.000;A|0.000	Atlas-SNP
SH3GL2	6456	hgsc.bcm.edu	hg19	9	17793437	17793437	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3GL2	NM_003026	exon8	c.T801A	p.T267T	TCCAACTGGAGAC	.	121.0	61.0	135.0	0.0	.	60	.	.	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	hg19	9	18892464	18892464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTSL1	NM_001040272	exon26	c.A4721G	p.K1574R	GTCAAAAGCTGAA	.	66.0	27.0	61.0	0.0	.	306	.	.	Atlas-SNP
MLLT3	4300	hgsc.bcm.edu	hg19	9	20413886	20413886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLLT3	NM_004529	exon5	c.T958A	p.C320S	CAGAACAAGTGAG	.	104.0	48.0	126.0	0.0	.	125	.	.	Atlas-SNP
IFNA16	3449	hgsc.bcm.edu	hg19	9	21217242	21217242	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA16	NM_002173	exon1	c.T63C	p.S21S	GCCCAGAGAACAG	.	233.0	61.0	192.0	0.0	.	27	.	.	Atlas-SNP
IFNA5	3442	hgsc.bcm.edu	hg19	9	21305011	21305011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA5	NM_002169	exon1	c.A245C	p.E82A	ATCATCTCATGGA	.	95.0	65.0	95.0	0.0	.	21	.	.	Atlas-SNP
IFNA8	3445	hgsc.bcm.edu	hg19	9	21409216	21409216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA8	NM_002170	exon1	c.T41A	p.L14H	TGGTGCTCAGCTA	.	70.0	34.0	47.0	0.0	.	19	.	.	Atlas-SNP
UBAP2	55833	hgsc.bcm.edu	hg19	9	33953474	33953474	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBAP2	NM_018449	exon13	c.867-2A>G	.	CAATGCTAAGCAG	.	91.0	46.0	104.0	0.0	.	82	.	.	Atlas-SNP
CA9	768	hgsc.bcm.edu	hg19	9	35674105	35674105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CA9	NM_001216	exon1	c.G149T	p.G50V	CCTTGGGAGGAGG	.	75.0	38.0	58.0	0.0	.	48	.	.	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	hg19	9	35724956	35724956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLN1	NM_006289	exon4	c.G229T	p.D77Y	TAGTGTCCTGTTA	.	62.0	21.0	86.0	0.0	.	185	.	.	Atlas-SNP
RGP1	9827	hgsc.bcm.edu	hg19	9	35752015	35752015	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGP1	NM_001080496	exon8	c.A825G	p.A275A	TGGGGCAGGGGGT	.	92.0	35.0	112.0	0.0	.	60	.	.	Atlas-SNP
OR2S2	56656	hgsc.bcm.edu	hg19	9	35957519	35957519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2S2	NM_019897	exon1	c.A577G	p.I193V	TGGAAATGTCAGC	.	79.0	45.0	86.0	0.0	.	46	.	.	Atlas-SNP
TMEM252	169693	hgsc.bcm.edu	hg19	9	71155621	71155621	+	Missense_Mutation	SNP	T	T	A	rs372500287	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_153237	exon1	c.A110T	p.Q37L	CTCCCCTGACAGT	.	168.0	57.0	114.0	0.0	.	.	.	.	Atlas-SNP
TRPM6	140803	hgsc.bcm.edu	hg19	9	77418778	77418778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPM6	NM_017662	exon15	c.A1663G	p.R555G	CATTTCTATTTCC	.	95.0	31.0	71.0	0.0	.	377	.	.	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79324425	79324425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRUNE2	NM_015225	exon8	c.T2765C	p.F922S	TCCTCAAAAAGGT	.	170.0	41.0	138.0	0.0	.	331	.	.	Atlas-SNP
KIF27	55582	hgsc.bcm.edu	hg19	9	86495242	86495242	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF27	NM_017576	exon11	c.A2613T	p.A871A	AATTACTGCATCC	.	66.0	18.0	72.0	0.0	.	103	.	.	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	hg19	9	87325598	87325598	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NTRK2	NM_001018065	exon6	c.A475T	p.I159F	ATGTGGATCAAGA	.	172.0	157.0	119.0	0.0	.	331	.	.	Atlas-SNP
C9orf153	389766	hgsc.bcm.edu	hg19	9	88842778	88842778	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf153	NM_001276368	exon4	c.T234A	p.P78P	GATAACAGGTTGG	.	99.0	43.0	97.0	0.0	.	10	.	.	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	hg19	9	90501957	90501957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_178828	exon4	c.T2555C	p.L852P	CAGACCTCCAGTC	.	63.0	21.0	79.0	0.0	.	.	.	.	Atlas-SNP
SEMA4D	10507	hgsc.bcm.edu	hg19	9	92002518	92002518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	SEMA4D,NS,NS,0,1	SEMA4D	NM_006378	exon14	c.C1113G	p.I371M	GCTGTCGATGCAC	.	83.0	10.0	94.0	0.0	.	81	.	.	Atlas-SNP
ROR2	4920	hgsc.bcm.edu	hg19	9	94488970	94488970	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROR2	NM_004560	exon8	c.A1239T	p.A413A	TGGAATTGCGATG	.	57.0	25.0	71.0	0.0	.	167	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96051121	96051121	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WNK2	NM_006648	exon19	c.T4085A	p.L1362Q	GCTTTCTAGCCAG	.	161.0	58.0	199.0	0.0	.	277	.	.	Atlas-SNP
C9orf3	84909	hgsc.bcm.edu	hg19	9	97522798	97522798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf3	NM_001193331	exon2	c.A733T	p.R245W	GCTATCAGGATAT	.	60.0	22.0	54.0	0.0	.	100	.	.	Atlas-SNP
HABP4	22927	hgsc.bcm.edu	hg19	9	99250387	99250387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HABP4	NM_014282	exon7	c.A1016G	p.Y339C	ATGACTATGAGGA	.	67.0	22.0	76.0	0.0	.	25	.	.	Atlas-SNP
CDC14B	8555	hgsc.bcm.edu	hg19	9	99286009	99286009	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC14B	NM_001077181	exon11	c.836-2A>G	.	GCCAGCTAGGAAA	.	153.0	134.0	188.0	0.0	.	64	.	.	Atlas-SNP
HEMGN	55363	hgsc.bcm.edu	hg19	9	100698475	100698475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	HEMGN,NS,malignant_melanoma,0,1	HEMGN	NM_197978	exon2	c.G151T	p.E51X	ATGTTTCCTTTTC	.	67.0	21.0	151.0	0.0	.	55	.	.	Atlas-SNP
NR4A3	8013	hgsc.bcm.edu	hg19	9	102590707	102590707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NR4A3	NM_173200	exon4	c.T416A	p.L139Q	AGGTGCTGCCCAG	.	19.0	14.0	37.0	0.0	.	80	.	.	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767379	105767379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CYLC2,right_upper_lobe,carcinoma,0,1	CYLC2	NM_001340	exon5	c.G466T	p.D156Y	AAGCTAGATGCAA	.	71.0	59.0	135.0	0.0	.	109	.	.	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767380	105767380	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYLC2	NM_001340	exon5	c.A467C	p.D156A	AGCTAGATGCAAA	.	71.0	9.0	134.0	0.0	.	109	.	.	Atlas-SNP
ABCA1	19	hgsc.bcm.edu	hg19	9	107620923	107620923	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA1	NM_005502	exon7	c.A600T	p.S200S	CTCTTCTGATTTT	.	81.0	70.0	139.0	0.0	.	244	.	.	Atlas-SNP
AKNA	80709	hgsc.bcm.edu	hg19	9	117106039	117106039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKNA	NM_030767	exon19	c.A3706G	p.N1236D	TGCCATTGCCTTT	.	63.0	44.0	113.0	0.0	.	119	.	.	Atlas-SNP
AKNA	80709	hgsc.bcm.edu	hg19	9	117118383	117118383	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKNA	NM_030767	exon14	c.A2880T	p.A960A	CACAGATGCAGCA	.	30.0	21.0	75.0	0.0	.	119	.	.	Atlas-SNP
DAB2IP	153090	hgsc.bcm.edu	hg19	9	124522473	124522473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DAB2IP	NM_032552	exon6	c.A841C	p.K281Q	GTGGAGAAGTGGT	.	27.0	22.0	60.0	0.0	.	150	.	.	Atlas-SNP
OR1L3	26735	hgsc.bcm.edu	hg19	9	125437543	125437543	+	Silent	SNP	C	C	T	rs367667552	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1L3	NM_001005234	exon1	c.C135T	p.I45I	GCTCATCATCTTG	.	47.0	42.0	114.0	0.0	.	51	.	.	Atlas-SNP
RABGAP1	23637	hgsc.bcm.edu	hg19	9	125782674	125782674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RABGAP1	NM_012197	exon13	c.A1730T	p.Q577L	TCTGGCAGCTGCT	.	27.0	23.0	59.0	0.0	.	164	.	.	Atlas-SNP
LHX2	9355	hgsc.bcm.edu	hg19	9	126794984	126794984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LHX2	NM_004789	exon5	c.T1219C	p.X407Q	CTTTTCTAATGAC	.	72.0	57.0	157.0	0.0	.	30	.	.	Atlas-SNP
GAPVD1	26130	hgsc.bcm.edu	hg19	9	128124887	128124887	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GAPVD1	NM_015635	exon27	c.A4326G	p.A1442A	CTAGGCAAATCCA	.	30.0	23.0	62.0	0.0	.	124	.	.	Atlas-SNP
QRFP	347148	hgsc.bcm.edu	hg19	9	133768976	133768976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	QRFP	NM_198180	exon1	c.T250A	p.C84S	ATCTGCAGCCAGC	.	38.0	34.0	101.0	0.0	.	14	.	.	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135779040	135779040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TSC1	NM_000368	exon17	c.A2206G	p.M736V	TCACCATGGCAGC	.	47.0	38.0	78.0	0.0	.	167	.	.	Atlas-SNP
C9orf96	169436	hgsc.bcm.edu	hg19	9	136270407	136270407	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf96	NM_153710	exon18	c.T1905C	p.S635S	CAGTAGTATGAAG	.	12.0	10.0	23.0	0.0	.	77	.	.	Atlas-SNP
TMEM8C	389827	hgsc.bcm.edu	hg19	9	136384125	136384125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM8C	NM_001080483	exon3	c.A270T	p.E90D	CTTGGGTTCGTCG	.	22.0	17.0	68.0	0.0	.	32	.	.	Atlas-SNP
KCNT1	57582	hgsc.bcm.edu	hg19	9	138656968	138656968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNT1	NM_020822	exon12	c.T1127A	p.L376Q	TGGTCCTGTGTGT	.	62.0	45.0	136.0	0.0	.	139	.	.	Atlas-SNP
SLC34A3	142680	hgsc.bcm.edu	hg19	9	140127698	140127698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC34A3	NM_001177317	exon7	c.T598A	p.W200R	TTCAACTGGCTCA	.	26.0	22.0	59.0	0.0	.	32	.	.	Atlas-SNP
EHMT1	79813	hgsc.bcm.edu	hg19	9	140695341	140695341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EHMT1	NM_024757	exon18	c.G2617T	p.G873C	GACGGAGGCTGGA	.	58.0	45.0	134.0	0.0	.	196	.	.	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	395294	395294	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIP2C	NM_014974	exon25	c.A3086T	p.H1029L	GCCACGTGGTCGC	.	33.0	16.0	29.0	0.0	.	195	.	.	Atlas-SNP
PFKFB3	5209	hgsc.bcm.edu	hg19	10	6255708	6255708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PFKFB3	NM_004566	exon2	c.A199G	p.K67E	CCCACAAAAGGTG	.	55.0	29.0	45.0	0.0	.	82	.	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7213990	7213990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SFMBT2	NM_001029880	exon19	c.T2282C	p.V761A	AGGGTGACGGCCC	.	27.0	13.0	12.0	0.0	.	209	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13217598	13217598	+	Missense_Mutation	SNP	A	A	T	rs138161730	bycluster;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCM10	NM_182751	exon6	c.A684T	p.R228S	AACTAGAGGTCAA	.	136.0	65.0	150.0	0.0	.	76	.	A|1.000;G|0.000	Atlas-SNP
FAM107B	83641	hgsc.bcm.edu	hg19	10	14563994	14563994	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM107B	NM_031453	exon4	c.A678T	p.P226P	CAATTCTGGTTTG	.	59.0	26.0	73.0	0.0	.	43	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17151661	17151661	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CUBN,NS,carcinoma,0,1	CUBN	NM_001081	exon10	c.T1089A	p.D363E	TGAGGCATCTGGG	.	76.0	27.0	67.0	0.0	.	515	.	.	Atlas-SNP
SLC39A12	221074	hgsc.bcm.edu	hg19	10	18250689	18250689	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC39A12	NM_152725	exon3	c.A441C	p.L147L	CAGCCTACTGAGC	.	129.0	60.0	133.0	0.0	.	181	.	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25887814	25887814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR158	NM_020752	exon11	c.C3259A	p.L1087I	GAGAAGCTTTTGA	.	76.0	30.0	88.0	0.0	.	255	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26463109	26463109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3A	NM_017433	exon30	c.A3916G	p.K1306E	GAAAAGAAGACAT	.	174.0	85.0	170.0	0.0	.	371	.	.	Atlas-SNP
ZNF33B	7582	hgsc.bcm.edu	hg19	10	43089253	43089253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF33B	NM_006955	exon5	c.A1145T	p.E382V	GGTTTCTCCCCTG	.	62.0	36.0	86.0	0.0	.	78	.	.	Atlas-SNP
FXYD4	53828	hgsc.bcm.edu	hg19	10	43870979	43870979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FXYD4	NM_001184963	exon6	c.T130G	p.C44G	CTGATCTGCGGAG	.	83.0	38.0	88.0	0.0	.	9	.	.	Atlas-SNP
RASSF4	83937	hgsc.bcm.edu	hg19	10	45484737	45484737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASSF4	NM_032023	exon7	c.C547G	p.P183A	TTTACTCCAGCCT	.	52.0	19.0	68.0	0.0	.	33	.	.	Atlas-SNP
ZFAND4	93550	hgsc.bcm.edu	hg19	10	46135397	46135397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001128324	exon6	c.A584G	p.Y195C	GAATTATACATAG	.	51.0	17.0	54.0	0.0	.	.	.	.	Atlas-SNP
PPYR1	5540	hgsc.bcm.edu	hg19	10	47087208	47087208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPYR1	NM_005972	exon3	c.T425C	p.L142P	ATCAGCTCATCAT	.	124.0	24.0	107.0	0.0	.	54	.	.	Atlas-SNP
ZNF488	118738	hgsc.bcm.edu	hg19	10	48370707	48370707	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF488	NM_153034	exon2	c.G175C	p.E59Q	GGCCCTGAGGCTG	.	24.0	7.0	35.0	0.0	.	38	.	.	Atlas-SNP
GDF2	2658	hgsc.bcm.edu	hg19	10	48416370	48416370	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GDF2	NM_016204	exon1	c.T324C	p.I108I	CCGCACAATGTTG	.	48.0	19.0	59.0	0.0	.	77	.	.	Atlas-SNP
ARHGAP22	58504	hgsc.bcm.edu	hg19	10	49687696	49687696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP22	NM_001256025	exon4	c.G452T	p.W151L	GGGGCCCAGATGA	.	117.0	56.0	119.0	0.0	.	94	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	50174650	50174650	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDFY4	NM_020945	exon55	c.T8516A	p.L2839Q	TGAGCCTGCCTGG	.	62.0	18.0	95.0	0.0	.	205	.	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	hg19	10	50530956	50530956	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C10orf71	NM_001135196	exon3	c.C366T	p.V122V	GCCAGTCCAGAGG	.	127.0	62.0	128.0	0.0	.	179	.	.	Atlas-SNP
C10orf71	118461	hgsc.bcm.edu	hg19	10	50532101	50532101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C10orf71	NM_001135196	exon3	c.A1511T	p.K504M	ACCTCAAGGACGT	.	58.0	32.0	85.0	0.0	.	179	.	.	Atlas-SNP
PGBD3	267004	hgsc.bcm.edu	hg19	10	50724703	50724703	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGBD3	NM_170753	exon2	c.C458T	p.P153L	ATGACCTCGTCAT	.	72.0	34.0	122.0	0.0	.	58	.	.	Atlas-SNP
NCOA4	8031	hgsc.bcm.edu	hg19	10	51585413	51585413	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCOA4	NM_001145261	exon9	c.A1560G	p.K520K	ATACAAAGAAGGA	.	82.0	41.0	70.0	0.0	.	58	.	.	Atlas-SNP
ASAH2	56624	hgsc.bcm.edu	hg19	10	52005188	52005188	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASAH2	NM_019893	exon2	c.A154T	p.T52S	TTTGGGTGGTTGA	.	83.0	35.0	105.0	0.0	.	69	.	.	Atlas-SNP
A1CF	29974	hgsc.bcm.edu	hg19	10	52603787	52603787	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	A1CF	NM_001198820	exon5	c.A219T	p.R73R	AAGGTCTCGGGGA	.	133.0	55.0	185.0	0.0	.	190	.	.	Atlas-SNP
PRKG1	5592	hgsc.bcm.edu	hg19	10	53564432	53564432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRKG1	NM_006258	exon4	c.A680G	p.Y227C	CCGAGTATATGGA	.	38.0	20.0	61.0	0.0	.	167	.	.	Atlas-SNP
BICC1	80114	hgsc.bcm.edu	hg19	10	60553242	60553242	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BICC1	NM_001080512	exon9	c.1048-2A>G	.	TTTTCTAGGGTTG	.	96.0	33.0	92.0	0.0	.	121	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61829458	61829458	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK3	NM_020987	exon37	c.T11181G	p.S3727S	GGATGCAGAAATT	.	66.0	24.0	101.0	0.0	.	703	.	.	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	hg19	10	63760062	63760062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARID5B	NM_032199	exon4	c.A715G	p.S239G	AACGAGAGTATAT	.	71.0	29.0	91.0	0.0	.	125	.	.	Atlas-SNP
ZNF365	22891	hgsc.bcm.edu	hg19	10	64415185	64415185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF365	NM_199452	exon4	c.C185T	p.T62I	ATCTCACCTTCCA	.	133.0	63.0	140.0	0.0	.	174	.	.	Atlas-SNP
ZNF365	22891	hgsc.bcm.edu	hg19	10	64425949	64425949	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF365	NM_199451	exon7	c.A1281C	p.Q427H	ACTCCAAAATTGT	.	45.0	13.0	65.0	0.0	.	174	.	.	Atlas-SNP
TET1	80312	hgsc.bcm.edu	hg19	10	70332525	70332525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TET1	NM_030625	exon2	c.A430G	p.I144V	TATAAGATACTCC	.	55.0	41.0	78.0	0.0	.	255	.	.	Atlas-SNP
DDX50	79009	hgsc.bcm.edu	hg19	10	70666604	70666604	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX50	NM_024045	exon2	c.A225G	p.E75E	CACTGAAGAAGGA	.	212.0	81.0	231.0	0.0	.	65	.	.	Atlas-SNP
DDX50	79009	hgsc.bcm.edu	hg19	10	70670895	70670895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX50	NM_024045	exon4	c.A532T	p.I178L	GATTTAATAGCTC	.	190.0	104.0	195.0	1.0	.	65	.	.	Atlas-SNP
SUPV3L1	6832	hgsc.bcm.edu	hg19	10	70968759	70968759	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUPV3L1	NM_003171	exon15	c.A2329T	p.R777X	GGGACGAGAAGAA	.	56.0	20.0	56.0	0.0	.	61	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73269837	73269837	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH23	NM_001171931	exon4	c.146-2A>T	.	TACTCCAGGTTCT	.	41.0	18.0	59.0	0.0	.	365	.	.	Atlas-SNP
NDST2	8509	hgsc.bcm.edu	hg19	10	75567441	75567441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST2	NM_003635	exon3	c.A706G	p.T236A	CATATGTACTATG	.	53.0	19.0	91.0	0.0	.	53	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76788413	76788413	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_012330	exon18	c.A3831T	p.P1277P	CCCGCCAGAAACA	.	60.0	38.0	51.0	0.0	.	.	.	.	Atlas-SNP
DLG5	9231	hgsc.bcm.edu	hg19	10	79601686	79601686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DLG5	NM_004747	exon7	c.A1390G	p.T464A	CAGATGTGCTGCT	.	43.0	17.0	54.0	0.0	.	154	.	.	Atlas-SNP
DYDC1	143241	hgsc.bcm.edu	hg19	10	82102044	82102044	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYDC1	NM_001269053	exon4	c.C323G	p.A108G	TCTTGAGCTCTCT	.	67.0	29.0	84.0	0.0	.	15	.	.	Atlas-SNP
LRIT1	26103	hgsc.bcm.edu	hg19	10	85991913	85991913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRIT1	NM_015613	exon4	c.T1642A	p.C548S	TGCAGCAGACAAG	.	95.0	36.0	88.0	0.0	.	73	.	.	Atlas-SNP
CCSER2	54462	hgsc.bcm.edu	hg19	10	86259681	86259681	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCSER2	NM_018999	exon10	c.G2376A	p.G792G	CCAGGGGATCCCA	.	56.0	24.0	87.0	0.0	.	7	.	.	Atlas-SNP
SLC16A12	387700	hgsc.bcm.edu	hg19	10	91198482	91198482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC16A12	NM_213606	exon6	c.T907C	p.Y303H	CCAAGTACACAAA	.	60.0	41.0	119.0	0.0	.	40	.	.	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91469185	91469185	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF20B	NM_016195	exon4	c.A318G	p.S106S	AAGCTCAGGGCAG	.	69.0	53.0	174.0	1.0	.	191	.	.	Atlas-SNP
CEP55	55165	hgsc.bcm.edu	hg19	10	95259889	95259889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP55	NM_018131	exon2	c.A81T	p.L27F	TACATTAGAAAAA	.	47.0	38.0	147.0	1.0	.	35	.	.	Atlas-SNP
BLNK	29760	hgsc.bcm.edu	hg19	10	97976426	97976426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BLNK	NM_001114094	exon7	c.C590T	p.S197L	GGAGGTGAACTGC	.	68.0	49.0	156.0	0.0	.	46	.	.	Atlas-SNP
TLL2	7093	hgsc.bcm.edu	hg19	10	98145897	98145897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLL2	NM_012465	exon15	c.A1928C	p.N643T	TTTTTGTTTGTGG	.	31.0	19.0	59.0	0.0	.	122	.	.	Atlas-SNP
CALHM3	119395	hgsc.bcm.edu	hg19	10	105236257	105236257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CALHM3	NM_001129742	exon2	c.T337A	p.W113R	GGATCCAGACCAG	.	56.0	39.0	140.0	0.0	.	46	.	.	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	hg19	10	115947807	115947807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TDRD1	NM_198795	exon2	c.A217T	p.T73S	GAGCAAACCAAAC	.	97.0	83.0	178.0	1.0	.	126	.	.	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	hg19	10	124402796	124402796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DMBT1	NM_007329	exon53	c.A7124G	p.Y2375C	GCTGCTACCGAGG	.	72.0	52.0	144.0	0.0	.	677	.	.	Atlas-SNP
PTPRE	5791	hgsc.bcm.edu	hg19	10	129869164	129869164	+	Silent	SNP	G	G	T	rs143511195	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRE	NM_006504	exon15	c.G1386T	p.P462P	CATCCCGTGTAAG	.	34.0	23.0	68.0	0.0	.	132	.	G|1.000;C|0.000	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134659626	134659626	+	Missense_Mutation	SNP	A	A	T	rs10870341	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC40	NM_001200049	exon44	c.T6373A	p.C2125S	CTTGGCACCGGAG	.	25.0	10.0	33.0	0.0	.	100	.	A|0.840;G|0.160	Atlas-SNP
TTC40	54777	hgsc.bcm.edu	hg19	10	134712524	134712524	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC40	NM_001200049	exon24	c.A3158T	p.K1053M	TTGGCCTTCTTCC	.	74.0	36.0	137.0	0.0	.	100	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135013094	135013094	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KNDC1	NM_152643	exon15	c.C2891G	p.S964X	AGGCGTCACCCTC	.	30.0	23.0	69.0	0.0	.	155	.	.	Atlas-SNP
ANO9	338440	hgsc.bcm.edu	hg19	11	430368	430368	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANO9	NM_001012302	exon8	c.T575A	p.V192D	AGCCAGACGAAGT	.	97.0	85.0	233.0	1.0	.	61	.	.	Atlas-SNP
PIDD	55367	hgsc.bcm.edu	hg19	11	801093	801093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PIDD	NM_145887	exon10	c.A1658T	p.H553L	AACAGGTGCAGGC	.	21.0	14.0	64.0	0.0	.	76	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1083817	1083817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC2	NM_002457	exon18	c.C2349A	p.S783R	CCTCAGCTGCCAG	.	22.0	20.0	72.0	0.0	.	614	.	.	Atlas-SNP
KRTAP5-4	387267	hgsc.bcm.edu	hg19	11	1642911	1642911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP5-4	NM_001012709	exon1	c.A413G	p.Q138R	CTGCACTGGGAGC	.	39.0	31.0	111.0	0.0	.	78	.	.	Atlas-SNP
MRGPRE	116534	hgsc.bcm.edu	hg19	11	3249418	3249418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRGPRE	NM_001039165	exon2	c.G612T	p.E204D	GCCTCGCTCCACC	.	17.0	15.0	42.0	0.0	.	35	.	.	Atlas-SNP
OR51F2	119694	hgsc.bcm.edu	hg19	11	4842970	4842970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51F2	NM_001004753	exon1	c.C355A	p.H119N	TTTCTACACGGAT	.	55.0	46.0	132.0	0.0	.	72	.	.	Atlas-SNP
OR51S1	119692	hgsc.bcm.edu	hg19	11	4870336	4870336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51S1	NM_001004758	exon1	c.T103A	p.W35R	ATGTCCACCAGGA	.	67.0	56.0	120.0	0.0	.	83	.	.	Atlas-SNP
OR51A2	401667	hgsc.bcm.edu	hg19	11	4976050	4976050	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51A2	NM_001004748	exon1	c.A894C	p.K298N	AATCTGTTTAGTT	.	156.0	140.0	176.0	0.0	.	40	.	.	Atlas-SNP
OR52N5	390075	hgsc.bcm.edu	hg19	11	5799159	5799159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR52N5	NM_001001922	exon1	c.A706T	p.S236C	AGAGGCTGATCGC	.	62.0	48.0	128.0	0.0	.	58	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6644033	6644033	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DCHS1	NM_003737	exon21	c.A8874T	p.L2958L	AAGTCCTAGGACC	.	29.0	25.0	72.0	0.0	.	277	.	.	Atlas-SNP
DCHS1	8642	hgsc.bcm.edu	hg19	11	6653396	6653396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DCHS1	NM_003737	exon6	c.A3347T	p.E1116V	TGGTTCTCAGCCA	.	30.0	29.0	58.0	0.0	.	277	.	.	Atlas-SNP
OR6A2	8590	hgsc.bcm.edu	hg19	11	6816315	6816315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6A2	NM_003696	exon1	c.A625G	p.I209V	TAAAAATGGCCAG	.	24.0	21.0	45.0	0.0	.	68	.	.	Atlas-SNP
TUB	7275	hgsc.bcm.edu	hg19	11	8111646	8111646	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUB	NM_003320	exon4	c.A286T	p.K96X	AAGAAGAAGCGCC	.	82.0	28.0	175.0	0.0	.	71	.	.	Atlas-SNP
IPO7	10527	hgsc.bcm.edu	hg19	11	9446500	9446500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IPO7	NM_006391	exon11	c.A1181T	p.Q394L	CTGCCCAGACACT	.	57.0	49.0	119.0	0.0	.	72	.	.	Atlas-SNP
PLEKHA7	144100	hgsc.bcm.edu	hg19	11	16816089	16816089	+	Missense_Mutation	SNP	C	C	A	rs150403598	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHA7	NM_175058	exon19	c.G2691T	p.Q897H	CCTCAGCTGGGGT	.	31.0	21.0	67.0	0.0	.	120	.	C|1.000;G|0.000	Atlas-SNP
IGSF22	283284	hgsc.bcm.edu	hg19	11	18743196	18743196	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGSF22	NM_173588	exon4	c.C264T	p.A88A	CACCCGGGCTCGG	.	26.0	22.0	77.0	0.0	.	211	.	.	Atlas-SNP
PTPN5	84867	hgsc.bcm.edu	hg19	11	18755139	18755139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPN5	NM_032781	exon10	c.C1044A	p.D348E	CAGAGGGTCGTCA	.	48.0	41.0	99.0	0.0	.	163	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33564933	33564933	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_012194	exon1	c.A933G	p.S311S	TGTCTCATCTCCC	.	175.0	70.0	185.0	0.0	.	.	.	.	Atlas-SNP
LDLRAD3	143458	hgsc.bcm.edu	hg19	11	36057758	36057758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LDLRAD3	NM_174902	exon2	c.G152T	p.G51V	GTGACGGGCTGCC	.	44.0	21.0	54.0	0.0	.	52	.	.	Atlas-SNP
RAG1	5896	hgsc.bcm.edu	hg19	11	36596843	36596843	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAG1	NM_000448	exon2	c.A1989C	p.A663A	GCTGGCAGATGAG	.	92.0	38.0	96.0	0.0	.	151	.	.	Atlas-SNP
RAG2	5897	hgsc.bcm.edu	hg19	11	36614915	36614915	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAG2	NM_001243785	exon3	c.T804C	p.N268N	TTCATCATTGTTA	.	48.0	18.0	48.0	0.0	.	92	.	.	Atlas-SNP
ALX4	60529	hgsc.bcm.edu	hg19	11	44297157	44297157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALX4	NM_021926	exon2	c.T518A	p.V173E	ATCCCCACAGTGT	.	52.0	26.0	45.0	0.0	.	58	.	.	Atlas-SNP
CREB3L1	90993	hgsc.bcm.edu	hg19	11	46334468	46334468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CREB3L1,NS,carcinoma,0,1	CREB3L1	NM_052854	exon8	c.C1029A	p.N343K	TGCCAACAGGTGG	.	38.0	14.0	39.0	0.0	.	30	.	.	Atlas-SNP
TRIM64C	646754	hgsc.bcm.edu	hg19	11	49075580	49075580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM64C	NM_001206631	exon6	c.G1039A	p.V347M	GGGTCACATCCAC	.	53.0	19.0	69.0	0.0	.	18	.	.	Atlas-SNP
OR4A15	81328	hgsc.bcm.edu	hg19	11	55135489	55135489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	OR4A15,NS,carcinoma,0,1	OR4A15	NM_001005275	exon1	c.G130A	p.G44R	CTCTTAGGGCTCA	.	68.0	31.0	71.0	0.0	.	161	.	.	Atlas-SNP
OR4A15	81328	hgsc.bcm.edu	hg19	11	55135678	55135678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4A15	NM_001005275	exon1	c.C319A	p.P107T	TTTGCTCCCAAAA	.	35.0	16.0	43.0	0.0	.	161	.	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	hg19	11	55433038	55433038	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4C6	NM_001004704	exon1	c.C396T	p.I132I	CACGATCATCATG	.	70.0	31.0	65.0	0.0	.	114	.	.	Atlas-SNP
OR8J3	81168	hgsc.bcm.edu	hg19	11	55905003	55905003	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8J3	NM_001004064	exon1	c.A192T	p.R64S	TAGATGTCTCAGG	.	79.0	30.0	110.0	0.0	.	112	.	.	Atlas-SNP
OR8K5	219453	hgsc.bcm.edu	hg19	11	55926969	55926969	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K5	NM_001004058	exon1	c.T825G	p.S275S	AAACACAGAAGCC	.	95.0	36.0	110.0	0.0	.	82	.	.	Atlas-SNP
OR5J2	282775	hgsc.bcm.edu	hg19	11	55944226	55944226	+	Missense_Mutation	SNP	A	A	G	rs201858818	bycluster	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5J2	NM_001005492	exon1	c.A133G	p.M45V	CTGGGCATGATCC	.	72.0	36.0	74.0	0.0	.	98	.	A|0.999;G|0.001	Atlas-SNP
OR8K3	219473	hgsc.bcm.edu	hg19	11	56086359	56086359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K3	NM_001005202	exon1	c.C577A	p.H193N	AATACACATGAAA	.	75.0	29.0	85.0	0.0	.	92	.	.	Atlas-SNP
OR8K1	390157	hgsc.bcm.edu	hg19	11	56114284	56114284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	OR8K1,face,malignant_melanoma,0,1	OR8K1	NM_001002907	exon1	c.T770C	p.F257S	TCATGTTCTATGG	.	65.0	24.0	107.0	0.0	.	93	.	.	Atlas-SNP
OR8K1	390157	hgsc.bcm.edu	hg19	11	56114424	56114424	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K1	NM_001002907	exon1	c.A910T	p.K304X	GAAGTAAAAGATG	.	41.0	16.0	51.0	0.0	.	93	.	.	Atlas-SNP
OR5AP2	338675	hgsc.bcm.edu	hg19	11	56409824	56409824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5AP2	NM_001002925	exon1	c.G92T	p.G31V	AGGACTCCTTGTA	.	52.0	24.0	48.0	0.0	.	69	.	.	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	hg19	11	56468593	56468593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001013358	exon1	c.C730A	p.L244M	TCCCACCTGACCT	.	92.0	18.0	104.0	0.0	.	.	.	.	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	hg19	11	56468658	56468658	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001013358	exon1	c.T795G	p.Y265X	TAGCTATTCTTTT	.	72.0	11.0	94.0	0.0	.	.	.	.	Atlas-SNP
OR5B3	441608	hgsc.bcm.edu	hg19	11	58170104	58170104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5B3	NM_001005469	exon1	c.C779A	p.P260H	GAGCTGGGTTGTA	.	48.0	20.0	55.0	0.0	.	65	.	.	Atlas-SNP
DDB1	1642	hgsc.bcm.edu	hg19	11	61091480	61091480	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDB1	NM_001923	exon7	c.A892T	p.K298X	GATCCTTGAGAGT	.	170.0	75.0	169.0	0.0	.	100	.	.	Atlas-SNP
CYBASC3	220002	hgsc.bcm.edu	hg19	11	61124109	61124109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYBASC3	NM_001161454	exon4	c.A128T	p.Y43F	ATCCAGTAGATAG	.	87.0	44.0	89.0	0.0	.	26	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62285505	62285505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A16384G	p.K5462E	TCCCTTTCACTTT	.	82.0	41.0	86.0	0.0	.	532	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62288328	62288328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A13561G	p.M4521V	CACTCATGGAGAT	.	98.0	29.0	111.0	0.0	.	532	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62289734	62289734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A12155G	p.H4052R	GGGCCATGAACAT	.	70.0	34.0	81.0	0.0	.	532	.	.	Atlas-SNP
B3GAT3	26229	hgsc.bcm.edu	hg19	11	62384649	62384649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B3GAT3	NM_012200	exon3	c.A428T	p.Q143L	AGCCGCTGGGCTT	.	50.0	27.0	57.0	0.0	.	24	.	.	Atlas-SNP
SLC22A8	9376	hgsc.bcm.edu	hg19	11	62763203	62763203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC22A8	NM_001184732	exon7	c.G974A	p.R325H	GTCATGCGGCGCA	.	65.0	28.0	107.0	0.0	.	60	.	.	Atlas-SNP
SLC22A12	116085	hgsc.bcm.edu	hg19	11	64359432	64359432	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC22A12	NM_001276326	exon1	c.402+2T>A	.	CCAAGGTAGGGCC	.	21.0	11.0	28.0	0.0	.	68	.	.	Atlas-SNP
SF1	7536	hgsc.bcm.edu	hg19	11	64536751	64536751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SF1	NM_001178030	exon7	c.G1098T	p.K366N	CTGCATCTTCCGT	.	126.0	51.0	131.0	0.0	.	124	.	.	Atlas-SNP
CDC42BPG	55561	hgsc.bcm.edu	hg19	11	64601242	64601242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC42BPG	NM_017525	exon22	c.A2533T	p.R845W	CCGGCCTCAGATC	.	27.0	11.0	42.0	0.0	.	101	.	.	Atlas-SNP
PPP2R5B	5526	hgsc.bcm.edu	hg19	11	64699068	64699068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP2R5B	NM_006244	exon10	c.G983C	p.C328S	AAACCTGCACCCA	.	49.0	16.0	59.0	0.0	.	47	.	.	Atlas-SNP
DRAP1	10589	hgsc.bcm.edu	hg19	11	65688799	65688799	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DRAP1	NM_006442	exon7	c.513-2A>T	.	CCCTGCAGCCCCC	.	148.0	80.0	168.0	0.0	.	18	.	.	Atlas-SNP
FOLR1	2348	hgsc.bcm.edu	hg19	11	71907162	71907162	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOLR1	NM_016729	exon4	c.T715A	p.W239R	GGGCCCTGGGCAG	.	84.0	39.0	99.0	0.0	.	22	.	.	Atlas-SNP
ATG16L2	89849	hgsc.bcm.edu	hg19	11	72538273	72538273	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATG16L2	NM_033388	exon14	c.G1407T	p.V469V	TGACGTGGTGTGT	.	68.0	24.0	90.0	0.0	.	26	.	.	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73066691	73066691	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGEF17	NM_014786	exon4	c.A3567G	p.L1189L	GTTCCTAGAGGTA	.	53.0	20.0	57.0	0.0	.	117	.	.	Atlas-SNP
OR2AT4	341152	hgsc.bcm.edu	hg19	11	74800166	74800166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2AT4	NM_001005285	exon1	c.C593T	p.T198I	TGGGGGGTGGTGT	.	55.0	24.0	58.0	0.0	.	32	.	.	Atlas-SNP
KLHL35	283212	hgsc.bcm.edu	hg19	11	75139660	75139660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL35	NM_001039548	exon2	c.T893C	p.L298P	TCAGCTAGGTCCA	.	31.0	17.0	37.0	0.0	.	15	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76903162	76903162	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	MYO7A,NS,carcinoma,0,1	MYO7A	NM_000260	exon31	c.A3991T	p.K1331X	TACGCCAAGGAGC	.	110.0	57.0	128.0	0.0	.	164	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78614413	78614413	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001098816	exon7	c.G649C	p.D217H	AGTGGTCCGTGGG	.	19.0	10.0	39.0	0.0	.	.	.	.	Atlas-SNP
SYTL2	54843	hgsc.bcm.edu	hg19	11	85436399	85436399	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYTL2	NM_206927	exon1	c.C1101A	p.P367P	ATCCTGGGGAAAA	.	53.0	29.0	58.0	0.0	.	231	.	.	Atlas-SNP
CCDC81	60494	hgsc.bcm.edu	hg19	11	86103710	86103710	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC81	NM_001156474	exon4	c.A426T	p.Q142H	GAAACAAAATGTG	.	106.0	38.0	130.0	0.0	.	89	.	.	Atlas-SNP
CCDC81	60494	hgsc.bcm.edu	hg19	11	86108753	86108753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC81	NM_001156474	exon6	c.A726T	p.K242N	GTTAAAAGACCAG	.	40.0	16.0	45.0	0.0	.	89	.	.	Atlas-SNP
CTSC	1075	hgsc.bcm.edu	hg19	11	88042455	88042455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CTSC	NM_001814	exon4	c.A517T	p.N173Y	CAAAGTTGTGATC	.	55.0	23.0	73.0	0.0	.	46	.	.	Atlas-SNP
NOX4	50507	hgsc.bcm.edu	hg19	11	89069089	89069089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOX4	NM_016931	exon17	c.G1540C	p.A514P	TCAGTGCATGATA	.	231.0	99.0	255.0	1.0	.	101	.	.	Atlas-SNP
NAALAD2	10003	hgsc.bcm.edu	hg19	11	89907042	89907042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAALAD2	NM_005467	exon14	c.G1461T	p.W487C	AAGCTGGTTGGAA	.	103.0	46.0	103.0	0.0	.	113	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92523226	92523226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT3	NM_001008781	exon7	c.A4453T	p.T1485S	GAAGCCACAGATA	.	131.0	61.0	138.0	0.0	.	1822	.	.	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93806484	93806484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEPHL1	NM_001098672	exon8	c.C1383G	p.I461M	AGTCATCAAGGCA	.	70.0	34.0	85.0	0.0	.	144	.	.	Atlas-SNP
FOLR4	390243	hgsc.bcm.edu	hg19	11	94040439	94040439	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOLR4	NM_001199206	exon3	c.T457A	p.W153R	TCCAACTGGCGTG	.	65.0	30.0	97.0	0.0	.	31	.	.	Atlas-SNP
GPR83	10888	hgsc.bcm.edu	hg19	11	94113896	94113896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR83	NM_016540	exon4	c.C691A	p.P231T	CAGCTGGCTCAGG	.	31.0	12.0	41.0	0.0	.	47	.	.	Atlas-SNP
PIWIL4	143689	hgsc.bcm.edu	hg19	11	94354059	94354059	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PIWIL4	NM_152431	exon20	c.A2460T	p.P820P	TGTCCCAGCACCA	.	86.0	40.0	82.0	0.0	.	70	.	.	Atlas-SNP
MMP7	4316	hgsc.bcm.edu	hg19	11	102394039	102394039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP7	NM_002423	exon5	c.A707T	p.Y236F	TTTCCATAGGTTG	.	77.0	20.0	95.0	0.0	.	27	.	.	Atlas-SNP
MMP10	4319	hgsc.bcm.edu	hg19	11	102642848	102642848	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP10	NM_002425	exon10	c.1227-2A>T	.	CAAATCTAAACCA	.	53.0	17.0	55.0	0.0	.	44	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	102984375	102984375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYNC2H1	NM_001377	exon2	c.A305T	p.E102V	TGTTAGAGTCACC	.	122.0	56.0	140.0	0.0	.	246	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103018556	103018556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYNC2H1	NM_001377	exon19	c.G2758T	p.D920Y	GTGATTGATGATC	.	43.0	21.0	49.0	0.0	.	246	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105732861	105732861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077244	exon5	c.A599T	p.E200V	TAGAAGAACTTGA	.	90.0	41.0	98.0	0.0	.	380	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105769103	105769103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077244	exon7	c.T835A	p.W279R	GATCGCTGGAAGA	.	143.0	61.0	153.0	0.0	.	380	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105795169	105795169	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077243	exon12	c.A1521G	p.R507R	GGTACGAGAGGAG	.	64.0	31.0	99.0	0.0	.	380	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105795274	105795274	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077243	exon12	c.T1626A	p.P542P	GGATCCTCTGGCC	.	127.0	63.0	128.0	0.0	.	380	.	.	Atlas-SNP
SLC35F2	54733	hgsc.bcm.edu	hg19	11	107673871	107673871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	SLC35F2,NS,carcinoma,0,2	SLC35F2	NM_017515	exon7	c.C795A	p.F265L	TGCCACGAACAGC	.	191.0	77.0	242.0	0.0	.	29	.	.	Atlas-SNP
ATM	472	hgsc.bcm.edu	hg19	11	108175446	108175446	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATM	NM_000051	exon37	c.T5541C	p.H1847H	GATTCATGATATT	.	47.0	20.0	70.0	0.0	.	1657	.	.	Atlas-SNP
C11orf65	160140	hgsc.bcm.edu	hg19	11	108253873	108253873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C11orf65	NM_152587	exon9	c.A817C	p.I273L	TATATATGTTTTT	.	64.0	23.0	78.0	0.0	.	29	.	.	Atlas-SNP
CADM1	23705	hgsc.bcm.edu	hg19	11	115080321	115080321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADM1	NM_014333	exon8	c.A1051G	p.T351A	TGGTGGTGGTGGT	.	56.0	33.0	53.0	0.0	.	74	.	.	Atlas-SNP
SIDT2	51092	hgsc.bcm.edu	hg19	11	117054562	117054562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIDT2	NM_001040455	exon7	c.G770A	p.G257E	CCTGCGGGGGCTC	.	44.0	21.0	81.0	0.0	.	82	.	.	Atlas-SNP
TMPRSS13	84000	hgsc.bcm.edu	hg19	11	117789167	117789167	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS13	NM_001206790	exon2	c.T408C	p.P136P	CCTGGCAGGAGAT	.	65.0	25.0	59.0	0.0	.	75	.	.	Atlas-SNP
ARHGEF12	23365	hgsc.bcm.edu	hg19	11	120349051	120349051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGEF12	NM_015313	exon37	c.A3719T	p.H1240L	ATTCACACCTGCC	.	60.0	25.0	73.0	0.0	.	133	.	.	Atlas-SNP
OR4D5	219875	hgsc.bcm.edu	hg19	11	123811185	123811185	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4D5	NM_001001965	exon1	c.A862T	p.T288S	ATCTATACCCTGA	.	86.0	45.0	94.0	0.0	.	94	.	.	Atlas-SNP
OR8B8	26493	hgsc.bcm.edu	hg19	11	124310403	124310403	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8B8	NM_012378	exon1	c.T579A	p.Y193X	ATTCACATAGGTG	.	161.0	72.0	179.0	0.0	.	76	.	.	Atlas-SNP
STT3A	3703	hgsc.bcm.edu	hg19	11	125489978	125489978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STT3A	NM_152713	exon17	c.A2036G	p.E679G	TCCTGGAGGAAGC	.	84.0	32.0	98.0	0.0	.	52	.	.	Atlas-SNP
ADAMTS8	11095	hgsc.bcm.edu	hg19	11	130278692	130278692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS8	NM_007037	exon7	c.A1894T	p.R632W	CGCTCCTCCCCCG	.	49.0	20.0	74.0	0.0	.	172	.	.	Atlas-SNP
SNX19	399979	hgsc.bcm.edu	hg19	11	130748331	130748331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNX19	NM_014758	exon11	c.G2965T	p.G989C	AGACACCCATCCT	.	81.0	40.0	116.0	0.0	.	84	.	.	Atlas-SNP
OPCML	4978	hgsc.bcm.edu	hg19	11	133402212	133402212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OPCML	NM_001012393	exon1	c.A8G	p.H3R	GCAGGATGGTACA	.	47.0	19.0	63.0	0.0	.	166	.	.	Atlas-SNP
GLB1L3	112937	hgsc.bcm.edu	hg19	11	134177095	134177095	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLB1L3	NM_001080407	exon10	c.T954C	p.D318D	TAAAGATGCAAAG	.	58.0	22.0	61.0	0.0	.	102	.	.	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	hg19	12	660161	660161	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B4GALNT3	NM_173593	exon11	c.T1071C	p.D357D	GGTGGATGGGCTT	.	65.0	29.0	114.0	0.0	.	64	.	.	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	hg19	12	662644	662644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B4GALNT3	NM_173593	exon14	c.A1555G	p.S519G	AAACCCAGCCCTG	.	51.0	23.0	78.0	0.0	.	64	.	.	Atlas-SNP
CACNA2D4	93589	hgsc.bcm.edu	hg19	12	1987485	1987485	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA2D4	NM_172364	exon16	c.C1715G	p.P572R	ACCAGGGGCCGGA	.	61.0	31.0	82.0	0.0	.	220	.	.	Atlas-SNP
CACNA2D4	93589	hgsc.bcm.edu	hg19	12	2027475	2027475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA2D4	NM_172364	exon1	c.G165T	p.W55C	CAGCAGCCACAGG	.	47.0	20.0	71.0	0.0	.	220	.	.	Atlas-SNP
FKBP4	2288	hgsc.bcm.edu	hg19	12	2909266	2909266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FKBP4	NM_002014	exon7	c.A824G	p.E275G	TGAAAGAGCGGGG	.	50.0	22.0	49.0	0.0	.	29	.	.	Atlas-SNP
KCNA1	3736	hgsc.bcm.edu	hg19	12	5021211	5021211	+	Missense_Mutation	SNP	A	A	C	rs146948558	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA1	NM_000217	exon2	c.A667C	p.I223L	TTCTTCATCGTGG	.	77.0	43.0	118.0	0.0	.	112	.	A|1.000;G|0.000	Atlas-SNP
KCNA5	3741	hgsc.bcm.edu	hg19	12	5154056	5154056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA5	NM_002234	exon1	c.C743T	p.S248F	CTGGGTCCGCGCG	.	38.0	19.0	23.0	0.0	.	138	.	.	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6140731	6140731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWF	NM_000552	exon21	c.G2699A	p.S900N	GGGTTACTGCCGC	.	78.0	43.0	84.0	0.0	.	338	.	.	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6143964	6143964	+	Missense_Mutation	SNP	T	T	C	rs371017187		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWF	NM_000552	exon20	c.A2575G	p.T859A	GGTCTGTGCAGTT	.	79.0	40.0	116.0	0.0	.	338	.	.	Atlas-SNP
NANOGNB	360030	hgsc.bcm.edu	hg19	12	7923072	7923072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NANOGNB	NM_001145465	exon3	c.A473G	p.N158S	AATATAATAAAGA	.	71.0	33.0	75.0	0.0	.	6	.	.	Atlas-SNP
CLEC2B	9976	hgsc.bcm.edu	hg19	12	10005916	10005916	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLEC2B	NM_005127	exon5	c.A433T	p.R145W	TTTTCCTGCAAAT	.	59.0	29.0	51.0	0.0	.	19	.	.	Atlas-SNP
TAS2R7	50837	hgsc.bcm.edu	hg19	12	10954328	10954328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAS2R7	NM_023919	exon1	c.A842G	p.H281R	AATGAATGACTTG	.	104.0	43.0	133.0	0.0	.	35	.	.	Atlas-SNP
GPRC5A	9052	hgsc.bcm.edu	hg19	12	13061653	13061653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPRC5A	NM_003979	exon2	c.T470C	p.M157T	TGACCATGAATAG	.	64.0	34.0	81.0	0.0	.	38	.	.	Atlas-SNP
HEBP1	50865	hgsc.bcm.edu	hg19	12	13140219	13140219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEBP1	NM_015987	exon3	c.A265T	p.N89Y	CTTCATTGGGGAA	.	126.0	53.0	127.0	0.0	.	16	.	.	Atlas-SNP
ART4	420	hgsc.bcm.edu	hg19	12	14993397	14993397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ART4	NM_021071	exon2	c.A835G	p.N279D	GACAGTTATATGT	.	49.0	21.0	57.0	0.0	.	27	.	.	Atlas-SNP
C2CD5	9847	hgsc.bcm.edu	hg19	12	22606848	22606848	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	KIAA0528_ENST00000544930,NS,carcinoma,0,2	.	NM_014802	exon24	c.G2853A	p.E951E	TGGATTCTCCATG	.	92.0	40.0	124.0	0.0	.	.	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	hg19	12	32137547	32137547	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018169	exon4	c.A3658T	p.R1220X	GGAGAGAGAACTT	.	72.0	27.0	83.0	0.0	.	.	.	.	Atlas-SNP
SYT10	341359	hgsc.bcm.edu	hg19	12	33532888	33532888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT10	NM_198992	exon6	c.A1379G	p.H460R	TCATTGTGTCCTA	.	68.0	35.0	93.0	0.0	.	109	.	.	Atlas-SNP
KIF21A	55605	hgsc.bcm.edu	hg19	12	39727052	39727052	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.,2	KIF21A	NM_001173464	exon18	c.A2449T	p.R817X	GGTTTCTTTTTTG	.	126.0	41.0	111.0	0.0	.	238	.	.	Atlas-SNP
ABCD2	225	hgsc.bcm.edu	hg19	12	40010969	40010969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCD2	NM_005164	exon2	c.T941A	p.V314E	ATTTCTACCTATA	.	71.0	34.0	71.0	0.0	.	127	.	.	Atlas-SNP
NELL2	4753	hgsc.bcm.edu	hg19	12	45105173	45105173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NELL2	NM_001145107	exon12	c.A1241T	p.Q414L	ATGGTCTGGTCCT	.	83.0	23.0	75.0	0.0	.	286	.	.	Atlas-SNP
SLC38A2	54407	hgsc.bcm.edu	hg19	12	46760941	46760941	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC38A2	NM_018976	exon6	c.A399G	p.L133L	TTCATATAATAAA	.	150.0	16.0	183.0	0.0	.	36	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49420043	49420043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLL2	NM_003482	exon48	c.A15706C	p.N5236H	GCCCGTTGTTCTC	.	94.0	45.0	98.0	0.0	.	1173	.	.	Atlas-SNP
TUBA1C	84790	hgsc.bcm.edu	hg19	12	49666554	49666554	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUBA1C	NM_032704	exon4	c.A894T	p.P298P	TGAGCCAGCCAAC	.	190.0	105.0	233.0	0.0	.	32	.	.	Atlas-SNP
FAIM2	23017	hgsc.bcm.edu	hg19	12	50294962	50294962	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAIM2	NM_012306	exon2	c.A162T	p.P54P	GGGGGCTGGGGGG	.	33.0	12.0	23.0	0.0	.	32	.	.	Atlas-SNP
ASIC1	41	hgsc.bcm.edu	hg19	12	50473727	50473727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001256830	exon6	c.T1196C	p.M399T	GTGAAATGCCTTG	.	123.0	49.0	155.0	0.0	.	.	.	.	Atlas-SNP
ASIC1	41	hgsc.bcm.edu	hg19	12	50474966	50474966	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001095	exon10	c.1377+2T>A	.	ACGAGGTAAGCGG	.	69.0	33.0	65.0	0.0	.	.	.	.	Atlas-SNP
TFCP2	7024	hgsc.bcm.edu	hg19	12	51492562	51492562	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TFCP2	NM_001173452	exon13	c.T1416C	p.D472D	TACCTCATCACTG	.	55.0	24.0	46.0	0.0	.	49	.	.	Atlas-SNP
SLC4A8	9498	hgsc.bcm.edu	hg19	12	51865212	51865212	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC4A8	NM_001039960	exon14	c.A1800G	p.L600L	CTCCCTAATTTGC	.	59.0	23.0	61.0	0.0	.	292	.	.	Atlas-SNP
KRT81	3887	hgsc.bcm.edu	hg19	12	52682242	52682242	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT81	NM_002281	exon5	c.640-2A>G	.	ACATCCTGGAAAG	.	84.0	39.0	88.0	0.0	.	46	.	.	Atlas-SNP
KRT6C	286887	hgsc.bcm.edu	hg19	12	52862953	52862953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT6C	NM_173086	exon9	c.A1588T	p.S530C	CACTGCTGGAACT	.	122.0	56.0	133.0	0.0	.	55	.	.	Atlas-SNP
KRT72	140807	hgsc.bcm.edu	hg19	12	52979933	52979933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT72	NM_001146225	exon9	c.G1369T	p.G457W	CTGCCCCAGCATT	.	51.0	24.0	58.0	0.0	.	70	.	.	Atlas-SNP
KRT73	319101	hgsc.bcm.edu	hg19	12	53010081	53010081	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT73	NM_175068	exon2	c.T531C	p.N177N	CAGGTTATTCTTG	.	88.0	49.0	121.0	0.0	.	101	.	.	Atlas-SNP
KRT77	374454	hgsc.bcm.edu	hg19	12	53086355	53086355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT77	NM_175078	exon7	c.A1277G	p.Q426R	AGCTTCTGCCACG	.	43.0	21.0	43.0	0.0	.	58	.	.	Atlas-SNP
SOAT2	8435	hgsc.bcm.edu	hg19	12	53515148	53515148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SOAT2	NM_003578	exon12	c.A1199G	p.D400G	TCCATGACTGGCT	.	92.0	34.0	91.0	0.0	.	44	.	.	Atlas-SNP
RARG	5916	hgsc.bcm.edu	hg19	12	53605571	53605571	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RARG	NM_000966	exon10	c.C1254G	p.N418K	TTCAGGGTTCTCC	.	30.0	12.0	39.0	0.0	.	53	.	.	Atlas-SNP
HOXC10	3226	hgsc.bcm.edu	hg19	12	54379618	54379618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXC10	NM_017409	exon1	c.T575A	p.L192Q	CTCAGCTGGGGGG	.	77.0	41.0	128.0	0.0	.	42	.	.	Atlas-SNP
NEUROD4	58158	hgsc.bcm.edu	hg19	12	55421151	55421151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	NEUROD4,colon,carcinoma,0,1	NEUROD4	NM_021191	exon2	c.G928T	p.D310Y	CCTATAGACATGT	.	79.0	37.0	85.0	0.0	.	87	.	.	Atlas-SNP
OR6C3	254786	hgsc.bcm.edu	hg19	12	55726148	55726148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6C3	NM_054104	exon1	c.A664G	p.I222V	AGGACCATTTTGA	.	75.0	24.0	89.0	0.0	.	36	.	.	Atlas-SNP
NABP2	79035	hgsc.bcm.edu	hg19	12	56619992	56619992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_024068	exon5	c.A320T	p.N107I	TTCCTAACTTCAG	.	116.0	58.0	152.0	0.0	.	.	.	.	Atlas-SNP
TIMELESS	8914	hgsc.bcm.edu	hg19	12	56827889	56827889	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TIMELESS	NM_003920	exon2	c.A66G	p.G22G	AGTGTCTCCCTCC	.	96.0	38.0	147.0	0.0	.	107	.	.	Atlas-SNP
TAC3	6866	hgsc.bcm.edu	hg19	12	57407370	57407370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAC3	NM_013251	exon3	c.C200A	p.A67D	GTGCTAGCCTGGC	.	43.0	19.0	48.0	0.0	.	11	.	.	Atlas-SNP
KIF5A	3798	hgsc.bcm.edu	hg19	12	57970570	57970570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF5A	NM_004984	exon20	c.T2225A	p.L742Q	TAGAGCTAGAGAA	.	61.0	25.0	72.0	0.0	.	143	.	.	Atlas-SNP
DTX3	196403	hgsc.bcm.edu	hg19	12	58001020	58001020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DTX3	NM_178502	exon5	c.T374A	p.L125H	CCCCTCTCCGAGC	.	44.0	21.0	50.0	0.0	.	27	.	.	Atlas-SNP
AGAP2	116986	hgsc.bcm.edu	hg19	12	58121778	58121778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGAP2	NM_001122772	exon15	c.A2708T	p.Q903L	ATGGCCTGGACCC	.	59.0	26.0	49.0	0.0	.	167	.	.	Atlas-SNP
PPM1H	57460	hgsc.bcm.edu	hg19	12	63083571	63083571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPM1H	NM_020700	exon8	c.A1153G	p.T385A	CAATAGTTGCCAT	.	52.0	22.0	62.0	0.0	.	42	.	.	Atlas-SNP
CAND1	55832	hgsc.bcm.edu	hg19	12	67703830	67703830	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAND1	NM_018448	exon12	c.A3175T	p.R1059X	AAAGTTAGAAAGG	.	112.0	44.0	121.0	0.0	.	100	.	.	Atlas-SNP
YEATS4	8089	hgsc.bcm.edu	hg19	12	69759665	69759665	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	YEATS4	NM_006530	exon4	c.333+1G>T	.	AGACCTGTGAGTA	.	263.0	99.0	257.0	0.0	.	15	.	.	Atlas-SNP
LRRC10	376132	hgsc.bcm.edu	hg19	12	70004105	70004105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC10	NM_201550	exon1	c.A514G	p.I172V	GCCAGATGGTCCT	.	48.0	21.0	44.0	0.0	.	26	.	.	Atlas-SNP
TRHDE	29953	hgsc.bcm.edu	hg19	12	73012775	73012775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRHDE	NM_013381	exon13	c.T2291C	p.L764P	ATCCTCTAGATAA	.	254.0	120.0	295.0	0.0	.	194	.	.	Atlas-SNP
CAPS2	84698	hgsc.bcm.edu	hg19	12	75716791	75716791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPS2	NM_032606	exon5	c.G311T	p.C104F	GTTTGACATGGTG	.	278.0	95.0	282.0	0.0	.	96	.	.	Atlas-SNP
CAPS2	84698	hgsc.bcm.edu	hg19	12	75720286	75720286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CAPS2_ENST00000409445,NS,carcinoma,0,1	CAPS2	NM_032606	exon2	c.G50C	p.G17A	TGAGTTCCTGTGT	.	53.0	14.0	69.0	0.0	.	96	.	.	Atlas-SNP
GLIPR1L1	256710	hgsc.bcm.edu	hg19	12	75728612	75728612	+	Missense_Mutation	SNP	A	A	T	rs143627655	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLIPR1L1	NM_152779	exon1	c.A104T	p.D35V	TTATAGACAACTG	.	107.0	48.0	109.0	0.0	.	28	.	A|0.999;G|0.001	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	81042674	81042674	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRQ	NM_001145026	exon33	c.5400-2A>T	.	TATTGCAGGTTAC	.	231.0	87.0	257.0	0.0	.	119	.	.	Atlas-SNP
MGAT4C	25834	hgsc.bcm.edu	hg19	12	86373569	86373569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MGAT4C	NM_013244	exon7	c.T935A	p.M312K	TAGCCCATGTGCT	.	68.0	24.0	81.0	0.0	.	110	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88513944	88513944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP290	NM_025114	exon15	c.A1469G	p.E490G	TTCAATTCAAGTT	.	274.0	119.0	311.0	0.0	.	195	.	.	Atlas-SNP
LUM	4060	hgsc.bcm.edu	hg19	12	91502590	91502590	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LUM	NM_002345	exon2	c.T167A	p.L56Q	AATTTCAGCTCAT	.	59.0	24.0	82.0	0.0	.	65	.	.	Atlas-SNP
UBE2N	7334	hgsc.bcm.edu	hg19	12	93804888	93804888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2N	NM_003348	exon2	c.C218T	p.T73I	ATTTTGGTCATGA	.	186.0	84.0	195.0	0.0	.	20	.	.	Atlas-SNP
METAP2	10988	hgsc.bcm.edu	hg19	12	95905678	95905678	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	METAP2	NM_006838	exon9	c.A972C	p.P324P	GAAACCAATCCGT	.	55.0	17.0	69.0	0.0	.	28	.	.	Atlas-SNP
GAS2L3	283431	hgsc.bcm.edu	hg19	12	101018227	101018227	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GAS2L3	NM_174942	exon10	c.A1644C	p.P548P	AAAGCCAGTCCCA	.	95.0	37.0	102.0	0.0	.	76	.	.	Atlas-SNP
SLC5A8	160728	hgsc.bcm.edu	hg19	12	101551063	101551063	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC5A8	NM_145913	exon15	c.T1827A	p.R609R	TCACAAACGAGTC	.	73.0	8.0	101.0	0.0	.	102	.	.	Atlas-SNP
UTP20	27340	hgsc.bcm.edu	hg19	12	101748808	101748808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	UTP20,bladder,carcinoma,0,1	UTP20	NM_014503	exon41	c.A5306G	p.K1769R	AAAACAAGGAAGA	.	147.0	9.0	176.0	0.0	.	222	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104107485	104107485	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAB2	NM_017564	exon42	c.C4476A	p.T1492T	AACCACCCCAGGA	.	93.0	36.0	89.0	0.0	.	370	.	.	Atlas-SNP
TCP11L2	255394	hgsc.bcm.edu	hg19	12	106734764	106734764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCP11L2	NM_152772	exon9	c.T1303A	p.W435R	CCTATCTGGTCCT	.	66.0	39.0	81.0	0.0	.	59	.	.	Atlas-SNP
DAO	1610	hgsc.bcm.edu	hg19	12	109286766	109286766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DAO	NM_001917	exon6	c.A461T	p.E154V	TAACTGAGAGGGG	.	53.0	21.0	68.0	0.0	.	58	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112717077	112717077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001109662	exon9	c.A1210C	p.T404P	ATCGGGTGGCAGA	.	43.0	18.0	65.0	0.0	.	.	.	.	Atlas-SNP
RASAL1	8437	hgsc.bcm.edu	hg19	12	113557018	113557018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASAL1	NM_004658	exon8	c.T557A	p.L186Q	TCCCGCAGCTCCA	.	50.0	22.0	63.0	0.0	.	89	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117680507	117680507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOS1	NM_001204218	exon21	c.T3068C	p.L1023P	TTGGATAGACCTG	.	60.0	31.0	76.0	0.0	.	240	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117703310	117703310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOS1	NM_000620	exon12	c.C1947A	p.D649E	CACTTTGTCACTC	.	52.0	26.0	50.0	0.0	.	240	.	.	Atlas-SNP
KSR2	283455	hgsc.bcm.edu	hg19	12	118298200	118298200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KSR2	NM_173598	exon2	c.T130C	p.C44R	TTTTGCAGGACAG	.	34.0	17.0	43.0	0.0	.	208	.	.	Atlas-SNP
SRRM4	84530	hgsc.bcm.edu	hg19	12	119588876	119588876	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM4	NM_194286	exon10	c.C1131A	p.V377V	TTTGGTCCCATCC	.	92.0	42.0	86.0	0.0	.	131	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120594786	120594786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GCN1L1	NM_006836	exon27	c.A3098T	p.E1033V	AGCAACTCCGGGC	.	56.0	18.0	73.0	0.0	.	207	.	.	Atlas-SNP
COX6A1	1337	hgsc.bcm.edu	hg19	12	120875944	120875944	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COX6A1	NM_004373	exon1	c.T15C	p.G5G	AGTTGGTGTGTCC	.	37.0	20.0	58.0	0.0	.	5	.	.	Atlas-SNP
PITPNM2	57605	hgsc.bcm.edu	hg19	12	123498472	123498472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PITPNM2	NM_020845	exon3	c.G196T	p.G66C	GCATGCCCACATG	.	72.0	30.0	80.0	0.0	.	105	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124285839	124285839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH10	NM_207437	exon15	c.G2120A	p.G707E	CAGCTGGGATACA	.	74.0	38.0	76.0	0.0	.	888	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124383215	124383215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH10	NM_207437	exon55	c.T9140A	p.L3047Q	AGCGTCTGGATGG	.	92.0	44.0	92.0	0.0	.	888	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124886995	124886995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCOR2	NM_006312	exon16	c.A1595T	p.E532V	TCCTCCTCCTTCT	.	56.0	26.0	70.0	0.0	.	475	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	130184613	130184613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM132D	NM_133448	exon2	c.G710T	p.G237V	CAGTCCCCTCTCT	.	97.0	39.0	81.0	0.0	.	299	.	.	Atlas-SNP
MPHOSPH8	54737	hgsc.bcm.edu	hg19	13	20220900	20220900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MPHOSPH8	NM_017520	exon3	c.A687T	p.K229N	AAAGAAAGTTAAA	.	152.0	57.0	169.0	0.0	.	58	.	.	Atlas-SNP
EFHA1	221154	hgsc.bcm.edu	hg19	13	22113457	22113457	+	Missense_Mutation	SNP	T	T	A	rs371935367	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFHA1	NM_152726	exon4	c.A450T	p.R150S	AAGGTCTCTGAAA	.	182.0	84.0	197.0	0.0	.	33	.	.	Atlas-SNP
SGCG	6445	hgsc.bcm.edu	hg19	13	23898515	23898515	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGCG	NM_000231	exon8	c.T711A	p.L237L	TGTGCTTGATGCT	.	38.0	17.0	48.0	0.0	.	64	.	.	Atlas-SNP
FLT3	2322	hgsc.bcm.edu	hg19	13	28601380	28601380	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLT3	NM_004119	exon18	c.2054-2A>G	.	TGGTCCTGAAATA	.	52.0	29.0	67.0	0.0	.	15525	.	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32812069	32812069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRY	NM_023037	exon44	c.A6364T	p.S2122C	CTCTTCAGTCTGC	.	55.0	27.0	88.0	0.0	.	312	.	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32841436	32841436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRY	NM_023037	exon55	c.G8076C	p.M2692I	GCTTATGTGTGAC	.	36.0	15.0	51.0	0.0	.	312	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35731383	35731383	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBEA	NM_015678	exon21	c.T2820C	p.D940D	GGTGGATACCCTC	.	61.0	19.0	58.0	0.0	.	340	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39262741	39262741	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FREM2	NM_207361	exon1	c.A1260T	p.A420A	AGGAGCAGCTTCA	.	60.0	28.0	77.0	0.0	.	385	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39357294	39357294	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FREM2	NM_207361	exon5	c.T5729A	p.V1910E	GAGATGTGAGCCA	.	103.0	42.0	104.0	0.0	.	385	.	.	Atlas-SNP
LRCH1	23143	hgsc.bcm.edu	hg19	13	47302989	47302989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRCH1	NM_001164211	exon18	c.A1877G	p.E626G	GCATTGAGATGAG	.	58.0	23.0	81.0	0.0	.	104	.	.	Atlas-SNP
RB1	5925	hgsc.bcm.edu	hg19	13	49030437	49030437	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RB1	NM_000321	exon19	c.A1912T	p.T638S	TTCCAGACCCAGA	.	275.0	116.0	279.0	0.0	.	1068	.	.	Atlas-SNP
FNDC3A	22862	hgsc.bcm.edu	hg19	13	49781371	49781371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FNDC3A	NM_001079673	exon26	c.A3437T	p.Q1146L	TCTCTCAGAGGAC	.	136.0	126.0	158.0	0.0	.	93	.	.	Atlas-SNP
SUGT1	10910	hgsc.bcm.edu	hg19	13	53227239	53227239	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUGT1	NM_001130912	exon2	c.96+1G>A	.	TTAGAGGTGAGAG	.	69.0	23.0	84.0	0.0	.	37	.	.	Atlas-SNP
DIAPH3	81624	hgsc.bcm.edu	hg19	13	60490362	60490362	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIAPH3	NM_001042517	exon19	c.G2192C	p.R731P	GGCACCCGAAAAG	.	66.0	32.0	81.0	0.0	.	139	.	.	Atlas-SNP
KLHL1	57626	hgsc.bcm.edu	hg19	13	70535471	70535471	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL1	NM_020866	exon3	c.T786C	p.A262A	CCAGAGAGCATTG	.	77.0	29.0	92.0	0.0	.	164	.	.	Atlas-SNP
IRG1	730249	hgsc.bcm.edu	hg19	13	77527812	77527812	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IRG1	NM_001258406	exon2	c.G240T	p.V80V	TTTTGTGAACGGT	.	71.0	65.0	68.0	0.0	.	1	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77844588	77844588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCBP2	NM_015057	exon6	c.G1031A	p.G344D	TTAATGCCATTAC	.	148.0	62.0	155.0	0.0	.	1029	.	.	Atlas-SNP
SLITRK5	26050	hgsc.bcm.edu	hg19	13	88330290	88330290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLITRK5	NM_015567	exon2	c.A2647C	p.S883R	CCGTGCAGCCCCG	.	132.0	58.0	139.0	0.0	.	192	.	.	Atlas-SNP
ITGBL1	9358	hgsc.bcm.edu	hg19	13	102250520	102250520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGBL1	NM_004791	exon7	c.T886G	p.C296G	TGTAATTGCGGAA	.	56.0	50.0	65.0	0.0	.	83	.	.	Atlas-SNP
METTL21C	196541	hgsc.bcm.edu	hg19	13	103343193	103343193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	METTL21C	NM_001010977	exon2	c.A252G	p.I84M	ACTCTCTATGGAT	.	125.0	114.0	105.0	0.0	.	23	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103383046	103383046	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001146197	exon4	c.T20001C	p.I6667I	TGTATCAATGGAA	.	60.0	55.0	79.0	0.0	.	.	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103392604	103392604	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001146197	exon4	c.T10443C	p.H3481H	AGTTTTATGGTAT	.	54.0	29.0	49.0	0.0	.	.	.	.	Atlas-SNP
GRK1	6011	hgsc.bcm.edu	hg19	13	114324036	114324036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRK1	NM_002929	exon2	c.T734A	p.V245E	TGAAAGTACACAG	.	55.0	32.0	58.0	0.0	.	41	.	.	Atlas-SNP
OR4K2	390431	hgsc.bcm.edu	hg19	14	20344887	20344887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4K2	NM_001005501	exon1	c.T461C	p.M154T	GAGTTATGCATTC	.	116.0	22.0	110.0	0.0	.	97	.	.	Atlas-SNP
OR4K15	81127	hgsc.bcm.edu	hg19	14	20444394	20444394	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4K15	NM_001005486	exon1	c.T717C	p.V239V	CTTGGTTGTCTCC	.	86.0	52.0	68.0	0.0	.	82	.	.	Atlas-SNP
OR11G2	390439	hgsc.bcm.edu	hg19	14	20666491	20666491	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR11G2	NM_001005503	exon1	c.A997T	p.K333X	AGGAACAAAGATA	.	76.0	25.0	97.0	0.0	.	73	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20851687	20851687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEP1	NM_007110	exon26	c.G3827T	p.G1276V	AGCTGCCCATTCT	.	91.0	47.0	99.0	0.0	.	224	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20871535	20871535	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEP1	NM_007110	exon8	c.1266+1G>T	.	GACTCACCTTTCT	.	106.0	51.0	121.0	0.0	.	224	.	.	Atlas-SNP
OXA1L	5018	hgsc.bcm.edu	hg19	14	23237247	23237247	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXA1L	NM_005015	exon3	c.A486T	p.V162V	AGATGTAGTCCAA	.	80.0	35.0	82.0	0.0	.	49	.	.	Atlas-SNP
MMP14	4323	hgsc.bcm.edu	hg19	14	23312529	23312529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP14	NM_004995	exon5	c.G752T	p.S251I	ATTCCAGTGACCC	.	44.0	15.0	53.0	0.0	.	40	.	.	Atlas-SNP
CEBPE	1053	hgsc.bcm.edu	hg19	14	23587945	23587945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEBPE	NM_001805	exon1	c.C356A	p.A119E	TTCACCGCCACAG	.	42.0	18.0	39.0	0.0	.	34	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23858850	23858850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH6	NM_002471	exon27	c.T3811A	p.S1271T	TGAGGGAGCGTTG	.	126.0	55.0	139.0	0.0	.	274	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23892879	23892879	+	Silent	SNP	C	C	A	rs368728770	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH7	NM_000257	exon24	c.G2976T	p.L992L	CTTGGTCAGCTTG	.	91.0	39.0	102.0	0.0	.	349	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23900689	23900689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH7	NM_000257	exon9	c.G734T	p.G245V	AATTTCCCCTGGA	.	67.0	27.0	70.0	0.0	.	349	.	.	Atlas-SNP
DCAF11	80344	hgsc.bcm.edu	hg19	14	24586232	24586232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_025230	exon3	c.G262T	p.G88W	CGTCTTGGGGATC	.	147.0	69.0	186.0	0.0	.	.	.	.	Atlas-SNP
ADCY4	196883	hgsc.bcm.edu	hg19	14	24792119	24792119	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY4	NM_001198592	exon19	c.T2333A	p.L778X	GAGTCCAAGGGGC	.	68.0	41.0	55.0	0.0	.	86	.	.	Atlas-SNP
NFATC4	4776	hgsc.bcm.edu	hg19	14	24841727	24841727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFATC4	NM_001198967	exon4	c.G1466T	p.R489I	AGCCTAGAGCCCA	.	56.0	32.0	47.0	0.0	.	115	.	.	Atlas-SNP
NFATC4	4776	hgsc.bcm.edu	hg19	14	24843545	24843545	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFATC4	NM_001198967	exon7	c.C1935A	p.A645A	CTCAGCCCAGGAG	.	44.0	21.0	45.0	0.0	.	115	.	.	Atlas-SNP
NKX2-8	26257	hgsc.bcm.edu	hg19	14	37051488	37051488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NKX2-8	NM_014360	exon1	c.A107T	p.Q36L	TCGGGCTGGGGGG	.	73.0	31.0	102.0	0.0	.	13	.	.	Atlas-SNP
KLHL28	54813	hgsc.bcm.edu	hg19	14	45414552	45414552	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL28	NM_017658	exon2	c.A580T	p.T194S	CTTCGGTAGCTAC	.	108.0	49.0	97.0	0.0	.	53	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45658267	45658267	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FANCM	NM_020937	exon20	c.A5042T	p.N1681I	ATGTAAATGATAA	.	106.0	44.0	111.0	0.0	.	225	.	.	Atlas-SNP
POLE2	5427	hgsc.bcm.edu	hg19	14	50140842	50140842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLE2	NM_001197331	exon5	c.A416T	p.Q139L	CTTACCTGGTGCA	.	93.0	39.0	89.0	0.0	.	36	.	.	Atlas-SNP
NEMF	9147	hgsc.bcm.edu	hg19	14	50318359	50318359	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEMF	NM_004713	exon3	c.A153G	p.L51L	TTCAAGTAAAAGT	.	63.0	26.0	53.0	0.0	.	79	.	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	hg19	14	52481921	52481921	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NID2	NM_007361	exon15	c.C3101G	p.P1034R	TCCCGGGGGGTGC	.	119.0	58.0	127.0	0.0	.	201	.	.	Atlas-SNP
GPR137C	283554	hgsc.bcm.edu	hg19	14	53100355	53100355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR137C	NM_001099652	exon5	c.G975T	p.Q325H	GGCACAGAGATTA	.	69.0	30.0	75.0	0.0	.	24	.	.	Atlas-SNP
DDHD1	80821	hgsc.bcm.edu	hg19	14	53521180	53521180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDHD1	NM_001160147	exon12	c.A2434T	p.S812C	CAGAACTGCTATG	.	134.0	65.0	218.0	0.0	.	202	.	.	Atlas-SNP
DDHD1	80821	hgsc.bcm.edu	hg19	14	53521253	53521253	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDHD1	NM_001160147	exon12	c.A2361G	p.S787S	TTCCATTGAGTCT	.	178.0	78.0	222.0	0.0	.	202	.	.	Atlas-SNP
C14orf105	55195	hgsc.bcm.edu	hg19	14	57960276	57960276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C14orf105	NM_018168	exon1	c.A158G	p.Q53R	TTATTCTGGTCCT	.	47.0	20.0	43.0	0.0	.	26	.	.	Atlas-SNP
KIAA0586	9786	hgsc.bcm.edu	hg19	14	58924599	58924599	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA0586	NM_001244189	exon13	c.A1644G	p.Q548Q	AGTACAAAACAAT	.	71.0	33.0	100.0	0.0	.	180	.	.	Atlas-SNP
MTHFD1	4522	hgsc.bcm.edu	hg19	14	64886605	64886605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTHFD1	NM_005956	exon8	c.G689T	p.G230V	AACCTGGGGCAAT	.	87.0	47.0	106.0	0.0	.	61	.	.	Atlas-SNP
PLEK2	26499	hgsc.bcm.edu	hg19	14	67857415	67857415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEK2	NM_016445	exon7	c.G820A	p.D274N	CTGGATCCTTCCT	.	92.0	36.0	115.0	0.0	.	23	.	.	Atlas-SNP
RAD51B	5890	hgsc.bcm.edu	hg19	14	68758622	68758622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAD51B	NM_133509	exon8	c.A778G	p.T260A	CAGATTACAACCC	.	44.0	20.0	47.0	0.0	.	80	.	.	Atlas-SNP
GALNT16	57452	hgsc.bcm.edu	hg19	14	69727044	69727044	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GALNT16	NM_001168368	exon1	c.A37T	p.T13S	ATCCTGACCGTAG	.	49.0	26.0	68.0	0.0	.	8	.	.	Atlas-SNP
PLEKHD1	400224	hgsc.bcm.edu	hg19	14	69967307	69967307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHD1	NM_001161498	exon3	c.T257A	p.L86Q	TCCCTCTGGGGGG	.	31.0	16.0	44.0	0.0	.	24	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72200517	72200517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIPA1L1	NM_015556	exon19	c.A5059G	p.K1687E	GCTGCCAAAGCCT	.	34.0	13.0	31.0	0.0	.	219	.	.	Atlas-SNP
LTBP2	4053	hgsc.bcm.edu	hg19	14	75019087	75019087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LTBP2	NM_000428	exon6	c.A1202T	p.Q401L	GGGATCTGGCAGA	.	23.0	12.0	26.0	0.0	.	158	.	.	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	hg19	14	75516322	75516322	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLH3	NM_014381	exon2	c.T37C	p.L13L	AACGCAATTTGGC	.	64.0	36.0	79.0	0.0	.	200	.	.	Atlas-SNP
FOS	2353	hgsc.bcm.edu	hg19	14	75747981	75747981	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOS	NM_005252	exon4	c.A997T	p.S333C	ACTCCCAGCTGCA	.	34.0	16.0	39.0	0.0	.	30	.	.	Atlas-SNP
SAMD15	161394	hgsc.bcm.edu	hg19	14	77844096	77844096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAMD15	NM_001010860	exon1	c.C335G	p.S112C	AAACATCCAGAGA	.	61.0	24.0	85.0	0.0	.	60	.	.	Atlas-SNP
FLRT2	23768	hgsc.bcm.edu	hg19	14	86089087	86089087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLRT2	NM_013231	exon2	c.A1229G	p.D410G	TTCCTGACTGGGA	.	189.0	75.0	211.0	0.0	.	168	.	.	Atlas-SNP
GALC	2581	hgsc.bcm.edu	hg19	14	88401194	88401194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GALC	NM_000153	exon17	c.A1940T	p.D647V	GACTTGTCATTCA	.	61.0	21.0	70.0	0.0	.	48	.	.	Atlas-SNP
GPR65	8477	hgsc.bcm.edu	hg19	14	88478190	88478190	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR65	NM_003608	exon2	c.A999T	p.L333F	GGAATTAGAGGTC	.	80.0	37.0	92.0	0.0	.	48	.	.	Atlas-SNP
KCNK10	54207	hgsc.bcm.edu	hg19	14	88707163	88707163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNK10	NM_138318	exon3	c.A404G	p.H135R	AGAGCATGCTGCA	.	32.0	19.0	25.0	0.0	.	273	.	.	Atlas-SNP
ZC3H14	79882	hgsc.bcm.edu	hg19	14	89044335	89044335	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZC3H14	NM_001160104	exon9	c.A1130C	p.Q377P	TTCCACAGAAACA	.	255.0	96.0	331.0	0.0	.	71	.	.	Atlas-SNP
KCNK13	56659	hgsc.bcm.edu	hg19	14	90650791	90650791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNK13	NM_022054	exon2	c.A671T	p.Y224F	GGAGCTACTTTGA	.	92.0	39.0	105.0	0.0	.	76	.	.	Atlas-SNP
FAM181A	90050	hgsc.bcm.edu	hg19	14	94395161	94395161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM181A	NM_138344	exon3	c.T716A	p.L239Q	AGCCCCTGGGACC	.	22.0	15.0	42.0	0.0	.	42	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105413692	105413692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK2	NM_138420	exon7	c.A8096T	p.Q2699L	GGGGGCTGAATGC	.	120.0	49.0	214.0	0.0	.	719	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105420987	105420987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK2	NM_138420	exon7	c.A801G	p.I267M	GCTCTTTATGGAT	.	24.0	19.0	48.0	0.0	.	719	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24923872	24923872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018958	exon1	c.C2858A	p.T953N	CATATACTGCATT	.	42.0	22.0	54.0	0.0	.	.	.	.	Atlas-SNP
GABRG3	2567	hgsc.bcm.edu	hg19	15	27777744	27777744	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRG3	NM_033223	exon10	c.1123-2A>T	.	GCTTGCAGAACTA	.	57.0	29.0	72.0	0.0	.	115	.	.	Atlas-SNP
FAN1	22909	hgsc.bcm.edu	hg19	15	31197069	31197069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAN1	NM_001146095	exon2	c.A203T	p.D68V	ACAATGACTTCGT	.	157.0	63.0	140.0	0.0	.	77	.	.	Atlas-SNP
FMN1	342184	hgsc.bcm.edu	hg19	15	33091016	33091016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FMN1	NM_001103184	exon15	c.A3450G	p.I1150M	TTTAGATATGTTT	.	62.0	27.0	77.0	0.0	.	174	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33954785	33954785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001243996	exon35	c.A5054T	p.E1685V	GCCCCGAGATTCC	.	74.0	35.0	81.0	0.0	.	760	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34080457	34080457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001243996	exon67	c.C9628G	p.L3210V	CCCGACCTGCTGA	.	95.0	47.0	99.0	0.0	.	760	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	34105180	34105180	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001036	exon73	c.C10374T	p.V3458V	AGCTGTCTTCCAC	.	57.0	36.0	65.0	0.0	.	760	.	.	Atlas-SNP
RASGRP1	10125	hgsc.bcm.edu	hg19	15	38804991	38804991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASGRP1	NM_001128602	exon7	c.T842C	p.V281A	TGAGCCACCTGGA	.	68.0	27.0	78.0	0.0	.	50	.	.	Atlas-SNP
BUB1B	701	hgsc.bcm.edu	hg19	15	40491906	40491906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BUB1B	NM_001211	exon10	c.A1379T	p.Q460L	CTACTCAGCAAGA	.	285.0	122.0	320.0	0.0	.	71	.	.	Atlas-SNP
PLCB2	5330	hgsc.bcm.edu	hg19	15	40591344	40591344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCB2	NM_004573	exon8	c.A668T	p.E223V	AAGATCTCATCTA	.	43.0	18.0	71.0	0.0	.	177	.	.	Atlas-SNP
DISP2	85455	hgsc.bcm.edu	hg19	15	40660858	40660858	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DISP2	NM_033510	exon8	c.A2545T	p.S849C	AGCCCCAGCTGCG	.	33.0	14.0	28.0	0.0	.	86	.	.	Atlas-SNP
JMJD7-PLA2G4B	8681	hgsc.bcm.edu	hg19	15	42134021	42134021	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	JMJD7-PLA2G4B	NM_005090	exon13	c.A1188T	p.S396S	AGCCTCAGAGCAC	.	78.0	35.0	77.0	0.0	.	90	.	.	Atlas-SNP
PLA2G4D	283748	hgsc.bcm.edu	hg19	15	42364510	42364510	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLA2G4D	NM_178034	exon14	c.T1398C	p.N466N	TTTGACATTGAGG	.	42.0	20.0	51.0	0.0	.	72	.	.	Atlas-SNP
LRRC57	255252	hgsc.bcm.edu	hg19	15	42839595	42839595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC57	NM_153260	exon4	c.A356T	p.Q119L	CCCAGTTGGTTCC	.	80.0	42.0	89.0	0.0	.	20	.	.	Atlas-SNP
EPB42	2038	hgsc.bcm.edu	hg19	15	43500883	43500883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB42	NM_000119	exon7	c.A1013G	p.Y338C	TCATTATAGTATT	.	139.0	65.0	120.0	0.0	.	53	.	.	Atlas-SNP
TGM7	116179	hgsc.bcm.edu	hg19	15	43571862	43571862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TGM7	NM_052955	exon10	c.T1639G	p.W547G	GCCTCCAGAAGGG	.	37.0	11.0	49.0	0.0	.	86	.	.	Atlas-SNP
WDR76	79968	hgsc.bcm.edu	hg19	15	44158449	44158449	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR76	NM_024908	exon13	c.A1740C	p.T580T	TGAGACAGGAAAG	.	141.0	57.0	126.0	0.0	.	34	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48058822	48058822	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA6D	NM_020858	exon16	c.A1695G	p.G565G	TGAAGGATATGAA	.	88.0	44.0	105.0	0.0	.	322	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48756135	48756135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN1	NM_000138	exon41	c.C5026A	p.P1676T	AGTCTGGAGGACA	.	57.0	24.0	77.0	0.0	.	310	.	.	Atlas-SNP
FAM227B	196951	hgsc.bcm.edu	hg19	15	49867301	49867301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152647	exon8	c.A552C	p.R184S	AAAAACTCTTTCC	.	271.0	115.0	329.0	0.0	.	.	.	.	Atlas-SNP
AP4E1	23431	hgsc.bcm.edu	hg19	15	51289653	51289653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AP4E1	NM_007347	exon18	c.A2477G	p.Y826C	TGGCATATGAAGA	.	88.0	31.0	74.0	0.0	.	78	.	.	Atlas-SNP
FAM214A	56204	hgsc.bcm.edu	hg19	15	52879347	52879347	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_019600	exon12	c.2877+1G>A	.	CACATACCACTTG	.	63.0	25.0	114.0	0.0	.	.	.	.	Atlas-SNP
RNF111	54778	hgsc.bcm.edu	hg19	15	59373264	59373264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF111	NM_017610	exon8	c.A2078G	p.H693R	CTTTCCATTCTCA	.	199.0	91.0	202.0	0.0	.	179	.	.	Atlas-SNP
VPS13C	54832	hgsc.bcm.edu	hg19	15	62223325	62223325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VPS13C	NM_020821	exon50	c.A6002C	p.D2001A	AGATCATCAAGGG	.	91.0	41.0	96.0	0.0	.	506	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	63102125	63102125	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLN2	NM_015059	exon49	c.A6665C	p.Q2222P	TCCAGCAAGCATC	.	88.0	46.0	119.0	0.0	.	253	.	.	Atlas-SNP
MEGF11	84465	hgsc.bcm.edu	hg19	15	66222097	66222097	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEGF11	NM_032445	exon12	c.T1533A	p.T511T	GCCAGGAGTGCAG	.	98.0	36.0	105.0	0.0	.	70	.	.	Atlas-SNP
RPL4	6124	hgsc.bcm.edu	hg19	15	66795504	66795504	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPL4	NM_000968	exon4	c.176-2A>T	.	ATGACCTAAAATT	.	115.0	44.0	110.0	0.0	.	29	.	.	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	hg19	15	68624266	68624266	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA11	NM_001004439	exon14	c.G1701A	p.E567E	GTTGTCCTCCAGG	.	104.0	57.0	100.0	0.0	.	110	.	.	Atlas-SNP
ITGA11	22801	hgsc.bcm.edu	hg19	15	68624312	68624312	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA11	NM_001004439	exon14	c.T1655A	p.L552H	TGGTTGAGGTCTC	.	127.0	52.0	123.0	0.0	.	110	.	.	Atlas-SNP
CORO2B	10391	hgsc.bcm.edu	hg19	15	69006317	69006317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CORO2B,NS,carcinoma,0,1	CORO2B	NM_006091	exon6	c.G702T	p.M234I	GAACATGAAGCGG	.	61.0	20.0	94.0	0.0	.	68	.	.	Atlas-SNP
GRAMD2	196996	hgsc.bcm.edu	hg19	15	72455799	72455799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRAMD2	NM_001012642	exon10	c.T764C	p.V255A	GAAGCTACTTGGG	.	85.0	38.0	87.0	0.0	.	31	.	.	Atlas-SNP
HCN4	10021	hgsc.bcm.edu	hg19	15	73614832	73614832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HCN4	NM_005477	exon8	c.C3602A	p.S1201Y	AGATTGGATGGCA	.	143.0	65.0	175.0	0.0	.	150	.	.	Atlas-SNP
CD276	80381	hgsc.bcm.edu	hg19	15	73994758	73994758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD276	NM_025240	exon3	c.A242G	p.E81G	TTGCTGAGGGCCA	.	58.0	28.0	67.0	0.0	.	29	.	.	Atlas-SNP
SEMA7A	8482	hgsc.bcm.edu	hg19	15	74707046	74707046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA7A	NM_003612	exon10	c.A1136T	p.Q379L	GCCACCTGGAAGG	.	61.0	37.0	79.0	0.0	.	58	.	.	Atlas-SNP
CYP1A1	1543	hgsc.bcm.edu	hg19	15	75013936	75013936	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYP1A1	NM_000499	exon3	c.A948G	p.G316G	ACCAGCTCCAAAG	.	62.0	26.0	80.0	0.0	.	60	.	.	Atlas-SNP
LMAN1L	79748	hgsc.bcm.edu	hg19	15	75111520	75111520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LMAN1L	NM_021819	exon6	c.A625T	p.S209C	ACTCCCAGTGATC	.	56.0	20.0	69.0	0.0	.	43	.	.	Atlas-SNP
C15orf39	56905	hgsc.bcm.edu	hg19	15	75499850	75499850	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C15orf39	NM_015492	exon2	c.A1461T	p.P487P	TCTTCCACAGAAG	.	43.0	18.0	66.0	0.0	.	64	.	.	Atlas-SNP
UBE2Q2	92912	hgsc.bcm.edu	hg19	15	76152229	76152229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2Q2	NM_173469	exon3	c.A293T	p.Q98L	GTCAGCAATTGAA	.	75.0	38.0	100.0	0.0	.	26	.	.	Atlas-SNP
UBE2Q2	92912	hgsc.bcm.edu	hg19	15	76183352	76183352	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2Q2	NM_173469	exon11	c.T1026C	p.N342N	AGCAAATAAGGTA	.	82.0	32.0	105.0	0.0	.	26	.	.	Atlas-SNP
SCAPER	49855	hgsc.bcm.edu	hg19	15	77021006	77021006	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCAPER	NM_020843	exon16	c.G2095C	p.E699Q	GGGCTTCTTGTTC	.	77.0	32.0	103.0	0.0	.	160	.	.	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	hg19	15	79749742	79749742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1024	NM_015206	exon2	c.A1253G	p.K418R	TGCCAAAGGATCA	.	191.0	86.0	216.0	0.0	.	146	.	.	Atlas-SNP
MEX3B	84206	hgsc.bcm.edu	hg19	15	82336831	82336831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEX3B	NM_032246	exon2	c.T380C	p.I127T	GAGATGATCTCCC	.	31.0	14.0	34.0	0.0	.	50	.	.	Atlas-SNP
EFTUD1	79631	hgsc.bcm.edu	hg19	15	82444096	82444096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFTUD1	NM_024580	exon18	c.G2699A	p.S900N	AATTTACTTAGGT	.	98.0	41.0	84.0	0.0	.	74	.	.	Atlas-SNP
BTBD1	53339	hgsc.bcm.edu	hg19	15	83718868	83718868	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BTBD1	NM_025238	exon3	c.A621G	p.T207T	ATCCATTGTGCTT	.	60.0	31.0	79.0	0.0	.	32	.	.	Atlas-SNP
AKAP13	11214	hgsc.bcm.edu	hg19	15	86286977	86286977	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP13	NM_006738	exon36	c.C8325A	p.T2775T	CTCTACCCGCCTG	.	101.0	15.0	138.0	0.0	.	394	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	86702252	86702252	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGBL1	NM_152336	exon4	c.A345C	p.A115A	CCAAGCAATCAGG	.	81.0	41.0	86.0	0.0	.	151	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	86823010	86823010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGBL1	NM_152336	exon15	c.T2078A	p.L693H	CAGCCCTCATGGT	.	110.0	54.0	106.0	0.0	.	151	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	87097675	87097675	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGBL1	NM_152336	exon20	c.C2763A	p.S921S	AGCTTCCACGGCC	.	63.0	30.0	77.0	0.0	.	151	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89388804	89388804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ACAN	NM_001135	exon7	c.A1120G	p.T374A	GTCCAGACAGTGA	.	75.0	36.0	92.0	0.0	.	220	.	.	Atlas-SNP
ABHD2	11057	hgsc.bcm.edu	hg19	15	89694906	89694906	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABHD2	NM_152924	exon4	c.195-2A>G	.	TTCTTTAGATACA	.	64.0	32.0	81.0	0.0	.	55	.	.	Atlas-SNP
WDR93	56964	hgsc.bcm.edu	hg19	15	90246187	90246187	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR93	NM_020212	exon3	c.A310C	p.K104Q	CTCAACAAAATGC	.	85.0	41.0	101.0	0.0	.	63	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94913364	94913364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCTP2	NM_001159643	exon11	c.G1537A	p.V513M	CTACAAGTGAAGG	.	106.0	20.0	119.0	0.0	.	122	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99478555	99478555	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGF1R	NM_000875	exon17	c.T3197A	p.L1066Q	GATTGCTGGGTGT	.	75.0	35.0	87.0	0.0	.	147	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101598240	101598240	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRK1	NM_024652	exon29	c.T4573A	p.F1525I	CCGACTTTTGCCA	.	55.0	24.0	80.0	0.0	.	310	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101605833	101605833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRK1	NM_024652	exon32	c.A5191G	p.M1731V	CCCTACATGGCCC	.	55.0	27.0	71.0	0.0	.	310	.	.	Atlas-SNP
TARSL2	123283	hgsc.bcm.edu	hg19	15	102252089	102252089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TARSL2	NM_152334	exon5	c.A806G	p.E269G	CTGTCTTCAATGA	.	67.0	15.0	74.0	0.0	.	63	.	.	Atlas-SNP
RHBDF1	64285	hgsc.bcm.edu	hg19	16	114754	114754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RHBDF1	NM_022450	exon3	c.A191G	p.H64R	AGCTCATGGTGGG	.	44.0	20.0	66.0	0.0	.	54	.	.	Atlas-SNP
PDIA2	64714	hgsc.bcm.edu	hg19	16	333349	333349	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDIA2	NM_006849	exon1	c.T180A	p.P60P	GCACCCTGCCCTG	.	47.0	27.0	67.0	0.0	.	51	.	.	Atlas-SNP
CCDC78	124093	hgsc.bcm.edu	hg19	16	774367	774367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC78	NM_001031737	exon9	c.T908A	p.L303Q	TCCACCAGCCTCT	.	41.0	20.0	37.0	0.0	.	26	.	.	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	hg19	16	1270071	1270071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1H	NM_021098	exon35	c.A6139G	p.R2047G	CCGGTGAGGCCGG	.	84.0	39.0	109.0	0.0	.	317	.	.	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	hg19	16	1551726	1551726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TELO2	NM_016111	exon11	c.G1424A	p.G475D	TGGATGGCGGCGT	.	20.0	11.0	24.0	0.0	.	44	.	.	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	hg19	16	2026270	2026270	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBL3	NM_006453	exon13	c.A1247T	p.Q416L	TGGCTCAGGGTTC	.	63.0	29.0	87.0	0.0	.	54	.	.	Atlas-SNP
ZNF598	90850	hgsc.bcm.edu	hg19	16	2048704	2048704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF598	NM_178167	exon13	c.A2360T	p.Q787L	CTGACCTGTCTGA	.	64.0	27.0	73.0	0.0	.	55	.	.	Atlas-SNP
E4F1	1877	hgsc.bcm.edu	hg19	16	2282755	2282755	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	E4F1	NM_004424	exon6	c.731-2A>C	.	CTCTGCAGATGAG	.	36.0	21.0	56.0	0.0	.	53	.	.	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	hg19	16	2348543	2348543	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA3	NM_001089	exon16	c.1742-2A>G	.	GAGACCTGGGGCC	.	74.0	31.0	62.0	0.0	.	176	.	.	Atlas-SNP
C16orf89	146556	hgsc.bcm.edu	hg19	16	5112500	5112500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C16orf89	NM_001098514	exon2	c.T284A	p.L95Q	TCCCCCAGCATCC	.	60.0	30.0	61.0	0.0	.	64	.	.	Atlas-SNP
CLEC16A	23274	hgsc.bcm.edu	hg19	16	11076808	11076808	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLEC16A	NM_015226	exon9	c.A1031T	p.E344V	TGTCTGAGATGTA	.	57.0	25.0	51.0	0.0	.	101	.	.	Atlas-SNP
MKL2	57496	hgsc.bcm.edu	hg19	16	14340581	14340581	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MKL2	NM_014048	exon12	c.A1464T	p.T488T	ACCTACAGGAACC	.	68.0	36.0	83.0	0.0	.	103	.	.	Atlas-SNP
XYLT1	64131	hgsc.bcm.edu	hg19	16	17353092	17353092	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XYLT1	NM_022166	exon3	c.A666G	p.R222R	TGCGGCTCTGTCC	.	86.0	40.0	87.0	0.0	.	147	.	.	Atlas-SNP
TMC7	79905	hgsc.bcm.edu	hg19	16	19033071	19033071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMC7	NM_024847	exon4	c.A581G	p.Y194C	CGAAATACAAGAT	.	103.0	37.0	109.0	0.0	.	75	.	.	Atlas-SNP
GPR139	124274	hgsc.bcm.edu	hg19	16	20084903	20084903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR139	NM_001002911	exon1	c.C36G	p.S12R	CAGCGAGCTGTTG	.	115.0	52.0	126.0	0.0	.	75	.	.	Atlas-SNP
ACSM3	6296	hgsc.bcm.edu	hg19	16	20788756	20788756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ACSM3	NM_005622	exon4	c.A492T	p.Q164H	ACTACAATCTTCA	.	91.0	46.0	107.0	0.0	.	113	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21136500	21136500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH3	NM_017539	exon9	c.A1400C	p.H467P	ACTTTGTGTATCA	.	68.0	35.0	51.0	0.0	.	1142	.	.	Atlas-SNP
ZP2	7783	hgsc.bcm.edu	hg19	16	21215496	21215496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZP2	NM_003460	exon9	c.C827T	p.T276I	GGTATGGTGAGAG	.	42.0	18.0	78.0	0.0	.	92	.	.	Atlas-SNP
POLR3E	55718	hgsc.bcm.edu	hg19	16	22316495	22316495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLR3E	NM_001258033	exon3	c.A55G	p.K19E	TTGGCCAAGAGTC	.	71.0	29.0	76.0	0.0	.	62	.	.	Atlas-SNP
USP31	57478	hgsc.bcm.edu	hg19	16	23080584	23080584	+	Missense_Mutation	SNP	C	C	A	rs34435034	bycluster;byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP31	NM_020718	exon16	c.G2842T	p.V948L	TGAACACGCCTTC	.	52.0	23.0	79.0	0.0	.	122	.	C|0.999;T|0.001	Atlas-SNP
CACNG3	10368	hgsc.bcm.edu	hg19	16	24373102	24373102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNG3	NM_006539	exon4	c.T866A	p.L289Q	CTTTTCTACAGTT	.	94.0	40.0	96.0	0.0	.	112	.	.	Atlas-SNP
HS3ST4	9951	hgsc.bcm.edu	hg19	16	26147136	26147136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HS3ST4	NM_006040	exon2	c.T938G	p.V313G	TTGAGGTGCTGGC	.	110.0	43.0	97.0	0.0	.	120	.	.	Atlas-SNP
IL4R	3566	hgsc.bcm.edu	hg19	16	27374493	27374493	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	IL4R,NS,carcinoma,0,1	IL4R	NM_000418	exon11	c.C1820G	p.S607X	CCTTCTCAAGCCT	.	40.0	20.0	34.0	0.0	.	70	.	.	Atlas-SNP
IL21R	50615	hgsc.bcm.edu	hg19	16	27448852	27448852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL21R	NM_181079	exon5	c.A262T	p.S88C	TCCTGCAGCCTCC	.	65.0	31.0	72.0	0.0	.	95	.	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27509073	27509073	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GTF3C1	NM_001520	exon14	c.A2235G	p.P745P	TCCACTTGGGCCC	.	116.0	53.0	125.0	0.0	.	210	.	.	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	hg19	16	27760972	27760972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	KIAA0556_ENST00000261588,colon,carcinoma,0,2	KIAA0556	NM_015202	exon16	c.C2691G	p.H897Q	ACTTCACGAGTCA	.	108.0	54.0	143.0	1.0	.	348	.	.	Atlas-SNP
C16orf54	283897	hgsc.bcm.edu	hg19	16	29755668	29755668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C16orf54	NM_175900	exon2	c.A605T	p.Q202L	CGTGGCTGGAGGC	.	99.0	52.0	93.0	0.0	.	18	.	.	Atlas-SNP
SEZ6L2	26470	hgsc.bcm.edu	hg19	16	29906726	29906726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	SEZ6L2_ENST00000350527,NS,carcinoma,0,2	SEZ6L2	NM_001243332	exon5	c.G707T	p.G236V	GGGGATCCCCCAC	.	74.0	34.0	80.0	0.0	.	137	.	.	Atlas-SNP
FBRS	64319	hgsc.bcm.edu	hg19	16	30680873	30680873	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBRS	NM_001105079	exon12	c.G1290C	p.P430P	CCCACCGGGAGCC	.	72.0	32.0	64.0	0.0	.	39	.	.	Atlas-SNP
PHKG2	5261	hgsc.bcm.edu	hg19	16	30764551	30764551	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKG2	NM_001172432	exon5	c.327-2A>T	.	TCCCTTAGGATGC	.	42.0	20.0	57.0	0.0	.	29	.	.	Atlas-SNP
ORAI3	93129	hgsc.bcm.edu	hg19	16	30965031	30965031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ORAI3	NM_152288	exon2	c.A754G	p.M252V	GCCATCATGGTAC	.	47.0	25.0	57.0	0.0	.	19	.	.	Atlas-SNP
PYDC1	260434	hgsc.bcm.edu	hg19	16	31228226	31228226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PYDC1	NM_152901	exon1	c.G124T	p.G42C	GCGCGCCCCGCGG	.	86.0	44.0	97.0	0.0	.	7	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31419776	31419776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGAD	NM_005353	exon10	c.A1040T	p.Q347L	CCTTCCAGCACGA	.	58.0	32.0	60.0	0.0	.	154	.	.	Atlas-SNP
ARMC5	79798	hgsc.bcm.edu	hg19	16	31477974	31477974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARMC5	NM_001105247	exon6	c.A2572T	p.I858F	GGCCGCATCCACC	.	47.0	20.0	50.0	0.0	.	94	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47622970	47622970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKB	NM_000293	exon10	c.T1025C	p.L342S	CATCATTGGAAGA	.	26.0	23.0	72.0	0.0	.	298	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47727355	47727355	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKB	NM_000293	exon28	c.A2832T	p.R944R	TGACCGAGTGTGG	.	70.0	59.0	148.0	0.0	.	298	.	.	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	hg19	16	49764842	49764842	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF423	NM_015069	exon3	c.C117T	p.S39S	CGCACGGCTGGTT	.	45.0	38.0	101.0	0.0	.	463	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53498136	53498136	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RBL2	NM_005611	exon12	c.1561-2A>G	.	TTTTATAGGGTAT	.	30.0	25.0	50.0	0.0	.	115	.	.	Atlas-SNP
SLC12A3	6559	hgsc.bcm.edu	hg19	16	56936357	56936357	+	Missense_Mutation	SNP	C	C	A	rs13306666	bycluster;byhapmap;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	SLC12A3,caecum,carcinoma,0,1	SLC12A3	NM_000339	exon24	c.C2820A	p.N940K	TGTCAACGAGATG	.	27.0	24.0	89.0	0.0	.	99	.	C|0.998;T|0.002	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	hg19	16	57935438	57935438	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNGB1	NM_001297	exon28	c.C2886T	p.L962L	CTGAAAGAGTGCG	.	37.0	32.0	59.0	0.0	.	105	.	.	Atlas-SNP
CCDC113	29070	hgsc.bcm.edu	hg19	16	58293762	58293762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC113	NM_014157	exon5	c.A551T	p.N184I	AGGATAATATGAA	.	89.0	81.0	190.0	0.0	.	30	.	.	Atlas-SNP
PRSS54	221191	hgsc.bcm.edu	hg19	16	58320072	58320072	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRSS54	NM_001080492	exon5	c.A291C	p.I97I	GTTACTTATACCC	.	49.0	38.0	115.0	0.0	.	48	.	.	Atlas-SNP
CDH5	1003	hgsc.bcm.edu	hg19	16	66431975	66431975	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH5	NM_001795	exon9	c.A1451T	p.Q484L	CCTACCAGCCCAA	.	51.0	43.0	128.0	0.0	.	111	.	.	Atlas-SNP
CMTM4	146223	hgsc.bcm.edu	hg19	16	66670433	66670433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CMTM4	NM_178818	exon2	c.C238T	p.P80S	CACACGGGGAGCA	.	34.0	29.0	62.0	0.0	.	19	.	.	Atlas-SNP
KCTD19	146212	hgsc.bcm.edu	hg19	16	67325322	67325322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCTD19	NM_001100915	exon14	c.T2455C	p.Y819H	GTGCATAAAACAT	.	50.0	46.0	136.0	0.0	.	82	.	.	Atlas-SNP
LRRC36	55282	hgsc.bcm.edu	hg19	16	67375858	67375858	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC36	NM_018296	exon2	c.71-2A>C	.	CTTTTCAGAACTG	.	34.0	30.0	68.0	0.0	.	68	.	.	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	hg19	16	67909967	67909967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EDC4	NM_014329	exon2	c.A202G	p.T68A	CTTCGGACCATGC	.	30.0	25.0	96.0	0.0	.	101	.	.	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	hg19	16	70995883	70995883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HYDIN	NM_001270974	exon38	c.C5947A	p.L1983M	TTTCCAGGCTTTC	.	62.0	34.0	110.0	0.0	.	788	.	.	Atlas-SNP
IST1	9798	hgsc.bcm.edu	hg19	16	71957226	71957226	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001270976	exon9	c.G834A	p.Q278Q	TTATCAGGCCTTT	.	63.0	53.0	97.0	0.0	.	.	.	.	Atlas-SNP
CNTNAP4	85445	hgsc.bcm.edu	hg19	16	76523604	76523604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTNAP4	NM_138994	exon12	c.A1685T	p.Q562L	TCATACAGCACAA	.	49.0	40.0	119.0	0.0	.	600	.	.	Atlas-SNP
PKD1L2	114780	hgsc.bcm.edu	hg19	16	81248727	81248727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L2	NM_001076780	exon3	c.T536A	p.V179D	TCCTGGACCTGGA	.	37.0	29.0	107.0	0.0	.	361	.	.	Atlas-SNP
ADAD2	161931	hgsc.bcm.edu	hg19	16	84230327	84230327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	ADAD2,NS,carcinoma,0,1	ADAD2	NM_139174	exon10	c.T1847C	p.V616A	GGGCTGTGGGGAA	.	26.0	24.0	58.0	0.0	.	46	.	.	Atlas-SNP
CDH15	1013	hgsc.bcm.edu	hg19	16	89246648	89246648	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH15	NM_004933	exon3	c.G242C	p.S81T	TCTACAGCATCCA	.	37.0	27.0	84.0	0.0	.	54	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89350278	89350278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKRD11	NM_001256183	exon9	c.A2672G	p.D891G	CGGCTGTCCCGCC	.	41.0	38.0	79.0	0.0	.	195	.	.	Atlas-SNP
SCARF1	8578	hgsc.bcm.edu	hg19	17	1538573	1538573	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCARF1	NM_003693	exon11	c.A1972C	p.T658P	GGCCAGTGGCTGA	.	46.0	39.0	71.0	0.0	.	46	.	.	Atlas-SNP
OR1D5	8386	hgsc.bcm.edu	hg19	17	2966603	2966603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1D5	NM_014566	exon1	c.A299G	p.Q100R	TAGAGCTGTGTCA	.	140.0	91.0	306.0	0.0	.	33	.	.	Atlas-SNP
OR1D2	4991	hgsc.bcm.edu	hg19	17	2996103	2996103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1D2	NM_002548	exon1	c.T188A	p.L63Q	TTGGCCAGGAAGA	.	110.0	91.0	174.0	0.0	.	39	.	.	Atlas-SNP
OR1A2	26189	hgsc.bcm.edu	hg19	17	3100889	3100889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1A2	NM_012352	exon1	c.T77A	p.V26D	ATAATGTCTTCTT	.	49.0	36.0	96.0	0.0	.	52	.	.	Atlas-SNP
SLC2A4	6517	hgsc.bcm.edu	hg19	17	7189182	7189182	+	Silent	SNP	C	C	T	rs375934415		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC2A4	NM_001042	exon10	c.C1281T	p.N427N	CTCCAACTGGACG	.	50.0	44.0	111.0	0.0	.	44	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578235	7578235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	TP53_ENST00000545858,temporoparietal,glioma,0,24	TP53	NM_000546	exon6	c.A614G	p.Y205C	TCCAAATACTCCA	.	73.0	60.0	133.0	0.0	.	33396	.	.	Atlas-SNP
MFSD6L	162387	hgsc.bcm.edu	hg19	17	8700730	8700730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MFSD6L	NM_152599	exon1	c.G1709A	p.G570E	TCTGTCCCCTGCT	.	28.0	27.0	45.0	0.0	.	46	.	.	Atlas-SNP
DHRS7C	201140	hgsc.bcm.edu	hg19	17	9674809	9674809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DHRS7C	NM_001220493	exon6	c.G935T	p.G312V	AGTTACCCCTCCT	.	27.0	17.0	42.0	0.0	.	34	.	.	Atlas-SNP
GLP2R	9340	hgsc.bcm.edu	hg19	17	9774103	9774103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLP2R	NM_004246	exon10	c.A1096G	p.I366V	CTTCTCATTTCTA	.	48.0	34.0	134.0	0.0	.	90	.	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	hg19	17	10416941	10416941	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH1	NM_005963	exon10	c.805+2T>A	.	TTACTCACATGTT	.	44.0	39.0	106.0	0.0	.	403	.	.	Atlas-SNP
MYH2	4620	hgsc.bcm.edu	hg19	17	10432930	10432930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH2	NM_017534	exon24	c.T3068C	p.V1023A	GTGTTGACTTTGT	.	52.0	40.0	128.0	0.0	.	390	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11809030	11809030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH9	NM_001372	exon61	c.G11653A	p.D3885N	GCCCTAGATTTTG	.	39.0	32.0	84.0	0.0	.	695	.	.	Atlas-SNP
CENPV	201161	hgsc.bcm.edu	hg19	17	16253335	16253335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CENPV	NM_181716	exon2	c.A419G	p.Q140R	AGGCCCTGGTATT	.	132.0	111.0	302.0	1.0	.	14	.	.	Atlas-SNP
TRPV2	51393	hgsc.bcm.edu	hg19	17	16332223	16332223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPV2	NM_016113	exon10	c.T1514A	p.L505Q	TGGTGCTGGGCTG	.	28.0	24.0	47.0	0.0	.	74	.	.	Atlas-SNP
ZNF287	57336	hgsc.bcm.edu	hg19	17	16455335	16455335	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF287	NM_020653	exon6	c.T2121A	p.N707K	ACATTCATTACAT	.	217.0	76.0	101.0	0.0	.	60	.	.	Atlas-SNP
MAPK7	5598	hgsc.bcm.edu	hg19	17	19286534	19286534	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAPK7	NM_002749	exon7	c.A2441T	p.Q814L	ACCTCCAGGACCC	.	36.0	17.0	61.0	0.0	.	72	.	.	Atlas-SNP
USP22	23326	hgsc.bcm.edu	hg19	17	20919135	20919135	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP22	NM_015276	exon6	c.A768T	p.A256A	GTAGCCTGCTAGG	.	41.0	16.0	46.0	0.0	.	45	.	.	Atlas-SNP
KCNJ18	100134444	hgsc.bcm.edu	hg19	17	21319679	21319679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001194958	exon3	c.A1025G	p.Y342C	TTGACTACTCGCA	.	67.0	10.0	90.0	0.0	.	.	.	.	Atlas-SNP
NLK	51701	hgsc.bcm.edu	hg19	17	26499544	26499544	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLK	NM_016231	exon7	c.T1049A	p.L350X	TGTAGTTGGATTT	.	61.0	25.0	73.0	0.0	.	88	.	.	Atlas-SNP
CCL11	6356	hgsc.bcm.edu	hg19	17	32612882	32612882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCL11	NM_002986	exon1	c.C55A	p.P19T	TTCAGCCCCCAGG	.	43.0	21.0	44.0	0.0	.	12	.	.	Atlas-SNP
NLE1	54475	hgsc.bcm.edu	hg19	17	33462285	33462285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLE1	NM_018096	exon10	c.G1197T	p.W399C	GCCATCCCACAGC	.	90.0	46.0	108.0	0.0	.	42	.	.	Atlas-SNP
UNC45B	146862	hgsc.bcm.edu	hg19	17	33495163	33495163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UNC45B	NM_001267052	exon10	c.T1235A	p.L412Q	TTGACCTGGGCAA	.	101.0	44.0	114.0	0.0	.	133	.	.	Atlas-SNP
CCL18	6362	hgsc.bcm.edu	hg19	17	34398401	34398401	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCL18	NM_002988	exon3	c.A270T	p.X90C	TGCCTGAGGGGCC	.	130.0	72.0	146.0	0.0	.	9	.	.	Atlas-SNP
GPR179	440435	hgsc.bcm.edu	hg19	17	36485679	36485679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR179	NM_001004334	exon11	c.G3773T	p.S1258I	TTGCCACTGTCTG	.	44.0	20.0	43.0	0.0	.	170	.	.	Atlas-SNP
PCGF2	7703	hgsc.bcm.edu	hg19	17	36891668	36891668	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCGF2	NM_007144	exon11	c.C843A	p.T281T	GGATGGGGTGGCT	.	55.0	25.0	50.0	0.0	.	24	.	.	Atlas-SNP
CCR7	1236	hgsc.bcm.edu	hg19	17	38721654	38721654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	CCR7,NS,carcinoma,0,1	CCR7	NM_001838	exon1	c.T8A	p.L3Q	TCACCCAGGTCCA	.	58.0	15.0	71.0	0.0	.	31	.	.	Atlas-SNP
KRT24	192666	hgsc.bcm.edu	hg19	17	38855854	38855854	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT24	NM_019016	exon6	c.A1203G	p.S401S	AATTTCTGACAGC	.	73.0	29.0	68.0	0.0	.	60	.	.	Atlas-SNP
KRT40	125115	hgsc.bcm.edu	hg19	17	39137242	39137242	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT40	NM_182497	exon6	c.G849A	p.Q283Q	ACTGACCTGAACA	.	103.0	48.0	85.0	0.0	.	27	.	.	Atlas-SNP
KRT40	125115	hgsc.bcm.edu	hg19	17	39140425	39140425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT40	NM_182497	exon3	c.T101A	p.L34H	CCGGGGAGACAAG	.	83.0	36.0	110.0	0.0	.	27	.	.	Atlas-SNP
KRTAP9-9	81870	hgsc.bcm.edu	hg19	17	39411764	39411764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP9-9	NM_030975	exon1	c.T127A	p.C43S	AGCTGCTGCCAGC	.	37.0	18.0	49.0	0.0	.	24	.	.	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	hg19	17	39464596	39464596	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP16-1	NM_001146182	exon1	c.T910A	p.C304S	AGACACAACAAGA	.	60.0	24.0	68.0	0.0	.	12	.	.	Atlas-SNP
KRTAP16-1	100505753	hgsc.bcm.edu	hg19	17	39465344	39465344	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP16-1	NM_001146182	exon1	c.T162G	p.C54W	TGGCCCACAGCTG	.	191.0	84.0	168.0	0.0	.	12	.	.	Atlas-SNP
KRT32	3882	hgsc.bcm.edu	hg19	17	39619248	39619248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT32	NM_002278	exon6	c.C1051G	p.L351V	GGGCCAGCTGGGA	.	76.0	39.0	71.0	0.0	.	57	.	.	Atlas-SNP
KRT15	3866	hgsc.bcm.edu	hg19	17	39673060	39673060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT15	NM_002275	exon3	c.G738T	p.E246D	TCTCACCTCTTCG	.	40.0	14.0	45.0	0.0	.	60	.	.	Atlas-SNP
KRT9	3857	hgsc.bcm.edu	hg19	17	39728014	39728014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT9	NM_000226	exon1	c.T231C	p.S77S	ACCCCCAGATCCT	.	151.0	52.0	162.0	0.0	.	78	.	.	Atlas-SNP
GHDC	84514	hgsc.bcm.edu	hg19	17	40345476	40345476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GHDC	NM_001142622	exon3	c.G124T	p.G42W	GGGCCCCCCATGC	.	29.0	12.0	33.0	0.0	.	63	.	.	Atlas-SNP
AOC3	8639	hgsc.bcm.edu	hg19	17	41004309	41004309	+	Missense_Mutation	SNP	T	T	A	rs438287	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AOC3	NM_003734	exon1	c.T949A	p.Y317N	CAGTTCTATCCCC	.	55.0	26.0	42.0	0.0	.	88	.	T|0.720;C|0.280	Atlas-SNP
NBR1	4077	hgsc.bcm.edu	hg19	17	41341610	41341610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBR1	NM_031862	exon8	c.A486T	p.R162S	GTTCAGAGAACAA	.	99.0	49.0	115.0	0.0	.	55	.	.	Atlas-SNP
NBR1	4077	hgsc.bcm.edu	hg19	17	41352594	41352594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBR1	NM_031862	exon17	c.G2437C	p.E813Q	ATCCCAGAGGTAG	.	180.0	75.0	207.0	0.0	.	55	.	.	Atlas-SNP
FZD2	2535	hgsc.bcm.edu	hg19	17	42635241	42635241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FZD2	NM_001466	exon1	c.G185T	p.G62V	TTCTGGGCCACAC	.	69.0	36.0	85.0	0.0	.	81	.	.	Atlas-SNP
C17orf104	284071	hgsc.bcm.edu	hg19	17	42750732	42750732	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C17orf104	NM_001145080	exon7	c.2458-2A>C	.	TCCCTCAGGTTGT	.	63.0	24.0	49.0	0.0	.	75	.	.	Atlas-SNP
HOXB6	3216	hgsc.bcm.edu	hg19	17	46675506	46675506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXB6	NM_018952	exon3	c.T7A	p.S3T	AATAGGAACTCAT	.	67.0	31.0	68.0	0.0	.	13	.	.	Atlas-SNP
SPOP	8405	hgsc.bcm.edu	hg19	17	47679227	47679227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPOP	NM_001007228	exon9	c.A980G	p.Y327C	ACTCACTAGTTGA	.	76.0	37.0	99.0	0.0	.	91	.	.	Atlas-SNP
SPOP	8405	hgsc.bcm.edu	hg19	17	47699405	47699405	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPOP	NM_001007228	exon3	c.A103T	p.M35L	TCCACATGTAGGA	.	120.0	55.0	148.0	0.0	.	91	.	.	Atlas-SNP
MYCBPAP	84073	hgsc.bcm.edu	hg19	17	48597032	48597032	+	Missense_Mutation	SNP	T	T	A	rs183786523	by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCBPAP	NM_032133	exon7	c.T929A	p.L310Q	GTCGACTGGAATA	.	82.0	45.0	109.0	0.0	.	135	.	T|1.000;C|0.000	Atlas-SNP
AKAP1	8165	hgsc.bcm.edu	hg19	17	55187406	55187406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP1	NM_001242902	exon4	c.G1735T	p.D579Y	AGCATGGATTCCG	.	77.0	27.0	77.0	0.0	.	73	.	.	Atlas-SNP
USP32	84669	hgsc.bcm.edu	hg19	17	58260585	58260585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP32	NM_032582	exon31	c.A4064T	p.D1355V	AGCACGTCCTCTT	.	130.0	70.0	137.0	0.0	.	128	.	.	Atlas-SNP
BRIP1	83990	hgsc.bcm.edu	hg19	17	59793426	59793426	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRIP1	NM_032043	exon18	c.2380-2A>T	.	TCAACCTAATAAT	.	39.0	16.0	54.0	0.0	.	237	.	.	Atlas-SNP
MRC2	9902	hgsc.bcm.edu	hg19	17	60744225	60744225	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRC2	NM_006039	exon5	c.G967T	p.E323X	AACTGGGAGAGTG	.	79.0	37.0	98.0	0.0	.	126	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65907751	65907751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BPTF	NM_004459	exon13	c.A4129G	p.S1377G	TCCAAGAGTGCTT	.	122.0	49.0	126.0	0.0	.	415	.	.	Atlas-SNP
RNF157	114804	hgsc.bcm.edu	hg19	17	74151646	74151646	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF157	NM_052916	exon15	c.A1695G	p.G565G	TACCTCTCCTTCT	.	55.0	17.0	52.0	0.0	.	66	.	.	Atlas-SNP
SEC14L1	6397	hgsc.bcm.edu	hg19	17	75196640	75196640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC14L1	NM_001204408	exon11	c.G894T	p.M298I	GATCATGTGTCAG	.	60.0	25.0	92.0	0.0	.	81	.	.	Atlas-SNP
TK1	7083	hgsc.bcm.edu	hg19	17	76170929	76170929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TK1	NM_003258	exon7	c.T616C	p.C206R	CTGGGCAGTTCTC	.	49.0	22.0	65.0	0.0	.	23	.	.	Atlas-SNP
TMEM105	284186	hgsc.bcm.edu	hg19	17	79287489	79287489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM105	NM_178520	exon3	c.G352A	p.G118R	ACAGCCCCTTCAT	.	65.0	52.0	138.0	0.0	.	19	.	.	Atlas-SNP
TBCD	6904	hgsc.bcm.edu	hg19	17	80887026	80887026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBCD	NM_005993	exon31	c.A2731T	p.S911C	CAGGCCAGTGAGA	.	18.0	15.0	32.0	0.0	.	94	.	.	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	hg19	18	5396213	5396213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB41L3	NM_012307	exon19	c.A2960G	p.Y987C	GATTCATATGTGA	.	36.0	31.0	80.0	0.0	.	222	.	.	Atlas-SNP
EPB41L3	23136	hgsc.bcm.edu	hg19	18	5416315	5416315	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB41L3	NM_012307	exon13	c.A1569G	p.T523T	GGGAGATGTGGGG	.	26.0	19.0	35.0	0.0	.	222	.	.	Atlas-SNP
TUBB6	84617	hgsc.bcm.edu	hg19	18	12325366	12325366	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUBB6	NM_032525	exon4	c.T578A	p.V193E	AGCTGGTGGAGAA	.	45.0	36.0	111.0	0.0	.	35	.	.	Atlas-SNP
ROCK1	6093	hgsc.bcm.edu	hg19	18	18559965	18559965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROCK1	NM_005406	exon22	c.A2560G	p.T854A	AAAGTGTCTGCAA	.	47.0	20.0	60.0	0.0	.	162	.	.	Atlas-SNP
MIB1	57534	hgsc.bcm.edu	hg19	18	19345790	19345790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIB1	NM_020774	exon2	c.T287A	p.I96N	TTGGCATTCGATG	.	49.0	32.0	59.0	0.0	.	87	.	.	Atlas-SNP
CABLES1	91768	hgsc.bcm.edu	hg19	18	20774494	20774494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CABLES1	NM_001100619	exon3	c.A1000G	p.R334G	GATACCAGGAATG	.	53.0	29.0	62.0	0.0	.	32	.	.	Atlas-SNP
C18orf8	29919	hgsc.bcm.edu	hg19	18	21104400	21104400	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C18orf8	NM_013326	exon12	c.A1014G	p.S338S	TTCTTCATCTTGG	.	55.0	21.0	64.0	0.0	.	58	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22669533	22669533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon7	c.G3802T	p.A1268S	TGTTTGCTTGAAC	.	102.0	40.0	110.0	0.0	.	269	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22806527	22806527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon4	c.T1355A	p.L452Q	TCATTTAGGTTAT	.	69.0	41.0	91.0	0.0	.	269	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22807425	22807425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon4	c.A457T	p.R153W	ACAGCCTACTGCA	.	119.0	62.0	143.0	0.0	.	269	.	.	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23854702	23854702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAF4B	NM_005640	exon4	c.T673C	p.S225P	AAGCCTTCAAGTT	.	164.0	71.0	186.0	0.0	.	71	.	.	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	hg19	18	29039011	29039011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DSG3	NM_001944	exon5	c.C388A	p.L130I	CGGGCTCTAAATG	.	165.0	67.0	176.0	0.0	.	172	.	.	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	hg19	18	30672732	30672732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001105528	exon20	c.A2381T	p.K794M	TGTTTCTTATCTC	.	200.0	104.0	254.0	0.0	.	.	.	.	Atlas-SNP
DTNA	1837	hgsc.bcm.edu	hg19	18	32444004	32444004	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DTNA	NM_001390	exon16	c.A1640T	p.E547V	AGTTGGAGGGTCT	.	35.0	19.0	35.0	0.0	.	321	.	.	Atlas-SNP
RIT2	6014	hgsc.bcm.edu	hg19	18	40554045	40554045	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RIT2	NM_001272077	exon3	c.T228A	p.A76A	CTGGCCAGCAGTG	.	252.0	134.0	296.0	1.0	.	56	.	.	Atlas-SNP
HAUS1	115106	hgsc.bcm.edu	hg19	18	43703286	43703286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HAUS1	NM_138443	exon6	c.A622G	p.M208V	AGAGGCATGGATG	.	190.0	82.0	258.0	0.0	.	22	.	.	Atlas-SNP
KATNAL2	83473	hgsc.bcm.edu	hg19	18	44589401	44589401	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KATNAL2	NM_031303	exon6	c.A392T	p.E131V	CCAGTGAACTTGC	.	56.0	22.0	62.0	0.0	.	64	.	.	Atlas-SNP
ATP8B1	5205	hgsc.bcm.edu	hg19	18	55338765	55338765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP8B1	NM_005603	exon17	c.A1867C	p.T623P	TAACAGTGTCAGC	.	130.0	54.0	154.0	0.0	.	126	.	.	Atlas-SNP
RAX	30062	hgsc.bcm.edu	hg19	18	56936364	56936364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAX	NM_013435	exon3	c.T913A	p.C305S	GCCCGCACGGGTA	.	42.0	15.0	51.0	0.0	.	19	.	.	Atlas-SNP
CCBE1	147372	hgsc.bcm.edu	hg19	18	57122130	57122130	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCBE1	NM_133459	exon6	c.A607T	p.K203X	ACTCCTTGCATGT	.	64.0	27.0	76.0	0.0	.	59	.	.	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	hg19	18	59166656	59166656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH20	NM_031891	exon2	c.G484T	p.E162X	GACAATGAGCCCA	.	101.0	54.0	114.0	0.0	.	117	.	.	Atlas-SNP
SERPINB2	5055	hgsc.bcm.edu	hg19	18	61562574	61562574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SERPINB2	NM_002575	exon3	c.T245C	p.M82T	GGTTCATGCAGCA	.	75.0	24.0	69.0	0.0	.	63	.	.	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	hg19	18	65180193	65180193	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DSEL	NM_032160	exon2	c.T1683C	p.F561F	ACTCACAAATACC	.	109.0	44.0	105.0	0.0	.	196	.	.	Atlas-SNP
CCDC102B	79839	hgsc.bcm.edu	hg19	18	66678301	66678301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC102B	NM_001093729	exon9	c.T1394C	p.V465A	TACGAGTGGAAGA	.	135.0	50.0	159.0	0.0	.	92	.	.	Atlas-SNP
FAM69C	125704	hgsc.bcm.edu	hg19	18	72114218	72114218	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM69C	NM_001044369	exon2	c.A499T	p.S167C	CCAGGCTGCTGTT	.	61.0	32.0	60.0	0.0	.	45	.	.	Atlas-SNP
THEG	51298	hgsc.bcm.edu	hg19	19	362299	362299	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	THEG	NM_016585	exon8	c.C1041T	p.G347G	GTTGAGGCCCTTG	.	54.0	21.0	96.0	0.0	.	58	.	.	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	758534	758534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.G1588T	p.V530L	TGGGAGGTGGCTG	.	77.0	33.0	86.0	0.0	.	56	.	.	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	758601	758601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.A1655T	p.E552V	AGAGGGAGAGTGT	.	129.0	58.0	153.0	0.0	.	56	.	.	Atlas-SNP
APC2	10297	hgsc.bcm.edu	hg19	19	1460853	1460853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	APC2,NS,malignant_melanoma,0,1	APC2	NM_005883	exon12	c.C1518G	p.H506Q	GCTCCACCAGGTA	.	81.0	11.0	109.0	0.0	.	50	.	.	Atlas-SNP
MAP2K2	5605	hgsc.bcm.edu	hg19	19	4117490	4117490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP2K2	NM_030662	exon2	c.A230G	p.E77G	CCCAGCTCTGAGA	.	55.0	16.0	70.0	0.0	.	72	.	.	Atlas-SNP
SIRT6	51548	hgsc.bcm.edu	hg19	19	4175099	4175099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIRT6	NM_016539	exon7	c.A664T	p.S222C	TCCCGCTGGGCCG	.	35.0	19.0	58.0	0.0	.	16	.	.	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4207906	4207906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKRD24	NM_133475	exon10	c.G773A	p.G258E	TGGCGGGGGACAA	.	82.0	38.0	88.0	0.0	.	180	.	.	Atlas-SNP
CCDC94	55702	hgsc.bcm.edu	hg19	19	4249223	4249223	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC94	NM_018074	exon2	c.25-2A>G	.	CCCTGCAGAAATA	.	72.0	34.0	86.0	0.0	.	28	.	.	Atlas-SNP
STAP2	55620	hgsc.bcm.edu	hg19	19	4333984	4333984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAP2	NM_001013841	exon2	c.A160T	p.N54Y	CCCGATTGCTATT	.	68.0	37.0	65.0	0.0	.	38	.	.	Atlas-SNP
ARRDC5	645432	hgsc.bcm.edu	hg19	19	4902726	4902726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARRDC5	NM_001080523	exon1	c.C154A	p.P52T	CTATGGGGTCCAC	.	120.0	62.0	139.0	0.0	.	19	.	.	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	hg19	19	5456001	5456001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNRF4	NM_181710	exon1	c.A499T	p.T167S	GACTGCACCTTCG	.	13.0	9.0	14.0	0.0	.	59	.	.	Atlas-SNP
RANBP3	8498	hgsc.bcm.edu	hg19	19	5918611	5918611	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RANBP3	NM_007322	exon15	c.A1369T	p.T457S	GCTTGGTGTTGAG	.	96.0	49.0	118.0	0.0	.	36	.	.	Atlas-SNP
DENND1C	79958	hgsc.bcm.edu	hg19	19	6478804	6478804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND1C	NM_024898	exon6	c.C356T	p.A119V	TCCTGGGCTAGGA	.	119.0	51.0	179.0	0.0	.	93	.	.	Atlas-SNP
C3	718	hgsc.bcm.edu	hg19	19	6710810	6710810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C3	NM_000064	exon13	c.A1526G	p.E509G	CCGGGCTCTCGCA	.	100.0	44.0	85.0	0.0	.	192	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8175948	8175948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN3	NM_032447	exon32	c.T4204A	p.C1402S	CCTGGCAGGCCCG	.	50.0	17.0	63.0	0.0	.	300	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9062263	9062263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A25183G	p.I8395V	TGGATATGGAAAC	.	54.0	30.0	52.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9067175	9067175	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.T20271A	p.T6757T	GGATGTAGTTGGT	.	58.0	27.0	84.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9067507	9067507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A19939G	p.I6647V	TCTCAATCCTTGT	.	90.0	42.0	96.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9069194	9069194	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.C18252T	p.A6084A	CACCAGGGCGGTG	.	111.0	56.0	111.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9071260	9071260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A16186T	p.S5396C	TGCTGCTCAAATT	.	96.0	42.0	100.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9077042	9077042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.C10404A	p.D3468E	GCCTTGGTCTCCA	.	47.0	27.0	55.0	0.0	.	4315	.	.	Atlas-SNP
OR7G1	125962	hgsc.bcm.edu	hg19	19	9226012	9226012	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR7G1	NM_001005192	exon1	c.T428A	p.L143X	ATCAGCAAGCCCC	.	89.0	32.0	92.0	0.0	.	53	.	.	Atlas-SNP
S1PR5	53637	hgsc.bcm.edu	hg19	19	10624587	10624587	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	S1PR5	NM_030760	exon2	c.G1101A	p.S367S	CTGGGGCGATGAG	.	36.0	18.0	33.0	0.0	.	33	.	.	Atlas-SNP
S1PR5	53637	hgsc.bcm.edu	hg19	19	10625481	10625481	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	S1PR5,colon,carcinoma,-2,1	S1PR5	NM_030760	exon2	c.T207C	p.A69A	CATGGGAGCGTGG	.	70.0	17.0	70.0	0.0	.	33	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11101907	11101907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMARCA4	NM_003072	exon8	c.A1327C	p.K443Q	CGCAGCAAGCGCC	.	90.0	33.0	94.0	0.0	.	502	.	.	Atlas-SNP
NFIX	4784	hgsc.bcm.edu	hg19	19	13136064	13136064	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFIX	NM_001271043	exon2	c.A281T	p.E94V	GGCCCGAGTTCCG	.	61.0	28.0	66.0	0.0	.	61	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13411364	13411364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1A	NM_001127221	exon18	c.T2282A	p.V761E	ACTTACACAGCTA	.	74.0	23.0	87.0	0.0	.	715	.	.	Atlas-SNP
EMR3	84658	hgsc.bcm.edu	hg19	19	14749129	14749129	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EMR3	NM_032571	exon11	c.T1272A	p.G424G	CAAAGCACCGGCG	.	55.0	30.0	78.0	0.0	.	99	.	.	Atlas-SNP
EMR3	84658	hgsc.bcm.edu	hg19	19	14755018	14755018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	EMR3,ear,carcinoma,+1,1	EMR3	NM_032571	exon9	c.A952T	p.R318W	CATCCCTGGACCA	.	66.0	30.0	75.0	0.0	.	99	.	.	Atlas-SNP
ZNF333	84449	hgsc.bcm.edu	hg19	19	14828536	14828536	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF333	NM_032433	exon11	c.T891C	p.D297D	CATTGATGTGAAA	.	60.0	30.0	73.0	0.0	.	76	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15290991	15290991	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOTCH3	NM_000435	exon20	c.A3219C	p.P1073P	GCCCTCTGGGCAC	.	52.0	25.0	55.0	0.0	.	340	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15299987	15299987	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOTCH3	NM_000435	exon9	c.1193-2A>T	.	GGCGCCTGCCGGA	.	66.0	25.0	79.0	0.0	.	340	.	.	Atlas-SNP
F2RL3	9002	hgsc.bcm.edu	hg19	19	17000522	17000522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	F2RL3	NM_003950	exon2	c.T248A	p.L83H	CCGCCCTCTATGG	.	25.0	13.0	20.0	0.0	.	20	.	.	Atlas-SNP
IL12RB1	3594	hgsc.bcm.edu	hg19	19	18171954	18171954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL12RB1	NM_005535	exon15	c.T1769C	p.I590T	AACTCAATGGCGG	.	268.0	122.0	307.0	0.0	.	92	.	.	Atlas-SNP
KIAA1683	80726	hgsc.bcm.edu	hg19	19	18377981	18377981	+	Silent	SNP	C	C	A	rs61740692	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1683	NM_001145304	exon3	c.G369T	p.L123L	GGAAATCAGCTTC	.	74.0	33.0	77.0	0.0	.	190	.	C|0.984;G|0.016	Atlas-SNP
KIAA1683	80726	hgsc.bcm.edu	hg19	19	18377982	18377982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1683	NM_001145304	exon3	c.T368C	p.L123P	GAAATCAGCTTCT	.	72.0	31.0	77.0	0.0	.	190	.	.	Atlas-SNP
TMEM161A	54929	hgsc.bcm.edu	hg19	19	19243552	19243552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM161A	NM_001256766	exon4	c.G200A	p.G67D	CTAAGGCCATTGG	.	86.0	35.0	98.0	0.0	.	37	.	.	Atlas-SNP
CILP2	148113	hgsc.bcm.edu	hg19	19	19651056	19651056	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CILP2	NM_153221	exon3	c.A207T	p.G69G	CCCCGGAGGCGAC	.	30.0	15.0	27.0	0.0	.	84	.	.	Atlas-SNP
CILP2	148113	hgsc.bcm.edu	hg19	19	19655120	19655120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CILP2	NM_153221	exon8	c.G1766T	p.G589V	CTTCTGGCGCTTT	.	56.0	33.0	71.0	0.0	.	84	.	.	Atlas-SNP
PBX4	80714	hgsc.bcm.edu	hg19	19	19675781	19675781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PBX4	NM_025245	exon6	c.C886T	p.P296S	TCCCTGGGACCCC	.	94.0	47.0	107.0	0.0	.	34	.	.	Atlas-SNP
GMIP	51291	hgsc.bcm.edu	hg19	19	19749243	19749243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GMIP	NM_016573	exon8	c.A586G	p.K196E	GCTCCTTGAACTC	.	92.0	33.0	113.0	0.0	.	55	.	.	Atlas-SNP
ZNF93	81931	hgsc.bcm.edu	hg19	19	20026109	20026109	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF93	NM_031218	exon2	c.T24C	p.D8D	TAGAGATGTGGCC	.	40.0	22.0	35.0	0.0	.	81	.	.	Atlas-SNP
ZNF430	80264	hgsc.bcm.edu	hg19	19	21239855	21239855	+	Silent	SNP	C	C	T	rs148853343		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	ZNF430,abdomen,malignant_melanoma,0,1	ZNF430	NM_025189	exon5	c.C741T	p.T247T	CTCAACCCTTACT	.	182.0	81.0	221.0	0.0	.	59	.	.	Atlas-SNP
ZNF431	170959	hgsc.bcm.edu	hg19	19	21365902	21365902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF431	NM_133473	exon5	c.G796T	p.G266C	GAATGTGGCAAAG	.	78.0	39.0	67.0	0.0	.	71	.	.	Atlas-SNP
ZNF429	353088	hgsc.bcm.edu	hg19	19	21719234	21719234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF429	NM_001001415	exon4	c.A379G	p.K127E	CTATACAAAGGAG	.	113.0	45.0	138.0	0.0	.	338	.	.	Atlas-SNP
ZNF729	100287226	hgsc.bcm.edu	hg19	19	22497586	22497586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF729	NM_001242680	exon4	c.G1367T	p.G456V	ATACTGGGGAGAA	.	42.0	21.0	33.0	0.0	.	78	.	.	Atlas-SNP
ZNF728	388523	hgsc.bcm.edu	hg19	19	23158819	23158819	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001267716	exon4	c.T1320A	p.T440T	ATGTTTAGTAAGG	.	16.0	10.0	16.0	0.0	.	.	.	.	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	hg19	19	23926975	23926975	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF681	NM_138286	exon4	c.T1377C	p.F459F	CTGGTTAAAGGCT	.	21.0	8.0	38.0	0.0	.	76	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30935770	30935770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF536	NM_014717	exon2	c.T1301G	p.L434R	CCTGCCTGCAGAG	.	62.0	21.0	69.0	0.0	.	424	.	.	Atlas-SNP
ZNF507	22847	hgsc.bcm.edu	hg19	19	32843894	32843894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF507	NM_001136156	exon3	c.A158G	p.K53R	TAAGCAAGATAGT	.	78.0	36.0	74.0	0.0	.	92	.	.	Atlas-SNP
RGS9BP	388531	hgsc.bcm.edu	hg19	19	33167237	33167237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGS9BP	NM_207391	exon1	c.T68A	p.L23Q	ACCACCTGGTGCT	.	50.0	22.0	34.0	0.0	.	9	.	.	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	hg19	19	36221017	36221017	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLL4	NM_014727	exon23	c.G5067C	p.L1689L	TCTCCTGGATGGC	.	113.0	55.0	157.0	0.0	.	229	.	.	Atlas-SNP
ARHGAP33	115703	hgsc.bcm.edu	hg19	19	36276186	36276186	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP33	NM_052948	exon18	c.A1817T	p.K606M	CTCGAAAGAAGCC	.	92.0	43.0	98.0	0.0	.	102	.	.	Atlas-SNP
ZNF585A	199704	hgsc.bcm.edu	hg19	19	37644045	37644045	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF585A	NM_199126	exon6	c.A591C	p.T197T	CTTTTGTGTGAAT	.	72.0	37.0	71.0	0.0	.	117	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38383818	38383818	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR87	NM_031951	exon4	c.T2408A	p.L803Q	CACTGTAGGTATA	.	61.0	23.0	66.0	0.0	.	191	.	.	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	hg19	19	38384319	38384319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR87	NM_031951	exon4	c.T1907C	p.L636S	AATTTTAAACAGG	.	53.0	18.0	50.0	0.0	.	191	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39076640	39076640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR1	NM_000540	exon103	c.G14866T	p.E4956X	GATATGGAGGTAG	.	56.0	25.0	69.0	0.0	.	708	.	.	Atlas-SNP
FBXO27	126433	hgsc.bcm.edu	hg19	19	39517611	39517611	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBXO27	NM_178820	exon5	c.A607T	p.R203X	GGAGTCTGTACAT	.	85.0	26.0	88.0	0.0	.	26	.	.	Atlas-SNP
TTC9B	148014	hgsc.bcm.edu	hg19	19	40724111	40724111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC9B	NM_152479	exon1	c.A178T	p.S60C	GGCTGCTGTCGAG	.	30.0	17.0	22.0	0.0	.	8	.	.	Atlas-SNP
PRX	57716	hgsc.bcm.edu	hg19	19	40903671	40903671	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRX	NM_181882	exon7	c.A588T	p.R196R	CACTTCTCGTACA	.	19.0	10.0	23.0	0.0	.	151	.	.	Atlas-SNP
CEACAM6	4680	hgsc.bcm.edu	hg19	19	42265920	42265920	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEACAM6	NM_002483	exon4	c.C747G	p.Y249X	CAATTACCGTCCA	.	110.0	44.0	130.0	0.0	.	52	.	.	Atlas-SNP
LYPD4	147719	hgsc.bcm.edu	hg19	19	42342129	42342129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LYPD4	NM_173506	exon4	c.T418G	p.C140G	AGCTACAGGACGC	.	97.0	45.0	117.0	0.0	.	30	.	.	Atlas-SNP
POU2F2	5452	hgsc.bcm.edu	hg19	19	42621499	42621499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POU2F2	NM_002698	exon5	c.G206T	p.S69I	TCGCCACTGGGGT	.	34.0	21.0	26.0	0.0	.	106	.	.	Atlas-SNP
CIC	23152	hgsc.bcm.edu	hg19	19	42793207	42793207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CIC	NM_015125	exon7	c.G1099C	p.E367Q	GGCGGAGAAGTAG	.	31.0	18.0	34.0	0.0	.	249	.	.	Atlas-SNP
CXCL17	284340	hgsc.bcm.edu	hg19	19	42937971	42937971	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CXCL17	NM_198477	exon2	c.T117C	p.S39S	TCTCCTAGAAGCC	.	31.0	18.0	46.0	0.0	.	8	.	.	Atlas-SNP
PSG6	5675	hgsc.bcm.edu	hg19	19	43412004	43412004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSG6	NM_001031850	exon4	c.A709G	p.K237E	GCAGCTTCGCTGT	.	40.0	24.0	39.0	0.0	.	89	.	.	Atlas-SNP
ZNF221	7638	hgsc.bcm.edu	hg19	19	44470227	44470227	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF221	NM_013359	exon6	c.A573T	p.S191S	ACAATCACACTCA	.	55.0	23.0	86.0	0.0	.	59	.	.	Atlas-SNP
ZNF230	7773	hgsc.bcm.edu	hg19	19	44515114	44515114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF230	NM_006300	exon5	c.A923G	p.Y308C	AACTGTACAAATC	.	55.0	24.0	86.0	0.0	.	44	.	.	Atlas-SNP
ZNF224	7767	hgsc.bcm.edu	hg19	19	44610721	44610721	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF224	NM_013398	exon6	c.A408T	p.A136A	TGAGGCAGGACTA	.	77.0	38.0	71.0	0.0	.	70	.	.	Atlas-SNP
ZFP112	7771	hgsc.bcm.edu	hg19	19	44832441	44832441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP112	NM_001083335	exon5	c.A1887T	p.R629S	GTGGACTCTCTGA	.	113.0	49.0	146.0	0.0	.	219	.	.	Atlas-SNP
ZFP112	7771	hgsc.bcm.edu	hg19	19	44833042	44833042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP112	NM_001083335	exon5	c.A1286C	p.N429T	TCAAGATTTGAAC	.	82.0	26.0	76.0	0.0	.	219	.	.	Atlas-SNP
RSPH6A	81492	hgsc.bcm.edu	hg19	19	46318016	46318016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RSPH6A	NM_030785	exon1	c.A419T	p.E140V	GGGGGCTCCTGGA	.	52.0	23.0	74.0	0.0	.	70	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47425269	47425269	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_004491	exon1	c.C3337T	p.Q1113X	AGCACCCAAGGCA	.	101.0	43.0	154.0	0.0	.	.	.	.	Atlas-SNP
KPTN	11133	hgsc.bcm.edu	hg19	19	47986778	47986778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KPTN	NM_007059	exon2	c.T290A	p.V97E	ATCCCCACAACCA	.	80.0	27.0	110.0	0.0	.	34	.	.	Atlas-SNP
ELSPBP1	64100	hgsc.bcm.edu	hg19	19	48519284	48519284	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELSPBP1	NM_022142	exon4	c.T343G	p.C115G	AAATTCTGTGAAA	.	57.0	19.0	82.0	0.0	.	29	.	.	Atlas-SNP
PLA2G4C	8605	hgsc.bcm.edu	hg19	19	48551611	48551611	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLA2G4C	NM_001159322	exon17	c.T1645G	p.C549G	CCAAGCAGCAACT	.	40.0	24.0	44.0	0.0	.	76	.	.	Atlas-SNP
FGF21	26291	hgsc.bcm.edu	hg19	19	49261303	49261303	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FGF21	NM_019113	exon3	c.A456T	p.P152P	GTCCCCACACCGG	.	164.0	59.0	188.0	0.0	.	21	.	.	Atlas-SNP
GYS1	2997	hgsc.bcm.edu	hg19	19	49473817	49473817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GYS1	NM_002103	exon14	c.A1795G	p.K599E	GGTATTTCCAGTC	.	51.0	27.0	59.0	0.0	.	59	.	.	Atlas-SNP
TRPM4	54795	hgsc.bcm.edu	hg19	19	49703938	49703938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPM4	NM_017636	exon19	c.G2849T	p.G950V	CGGAGGGGCTCCT	.	41.0	17.0	45.0	0.0	.	119	.	.	Atlas-SNP
SCAF1	58506	hgsc.bcm.edu	hg19	19	50154181	50154181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCAF1	NM_021228	exon7	c.A535C	p.T179P	TTGGGCACGGGAG	.	65.0	20.0	76.0	0.0	.	78	.	.	Atlas-SNP
SIGLEC11	114132	hgsc.bcm.edu	hg19	19	50453266	50453266	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC11	NM_052884	exon11	c.T2058A	p.L686L	CAATTGAAGCCCA	.	71.0	27.0	99.0	0.0	.	70	.	.	Atlas-SNP
NAPSA	9476	hgsc.bcm.edu	hg19	19	50861904	50861904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAPSA	NM_004851	exon9	c.T1169G	p.M390R	CTCTTCATGTCCC	.	68.0	30.0	108.0	0.0	.	38	.	.	Atlas-SNP
SHANK1	50944	hgsc.bcm.edu	hg19	19	51189492	51189492	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHANK1	NM_016148	exon21	c.2577+2T>C	.	CCGCCTACCTCAG	.	19.0	9.0	45.0	0.0	.	210	.	.	Atlas-SNP
SIGLECL1	284369	hgsc.bcm.edu	hg19	19	51768725	51768725	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_173635	exon3	c.A126T	p.G42G	GATGGGAGGAGTC	.	87.0	34.0	116.0	0.0	.	.	.	.	Atlas-SNP
IGLON5	402665	hgsc.bcm.edu	hg19	19	51828607	51828607	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGLON5	NM_001101372	exon4	c.C399A	p.A133A	CCCTGCCCGCATT	.	46.0	21.0	61.0	0.0	.	31	.	.	Atlas-SNP
SIGLEC8	27181	hgsc.bcm.edu	hg19	19	51958812	51958812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC8	NM_014442	exon4	c.C911T	p.P304L	CGTGAGGGGCACA	.	46.0	26.0	73.0	0.0	.	130	.	.	Atlas-SNP
SIGLEC12	89858	hgsc.bcm.edu	hg19	19	52003208	52003208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC12	NM_053003	exon2	c.C774A	p.N258K	TATGTAGTTCCAT	.	60.0	29.0	85.0	0.0	.	243	.	.	Atlas-SNP
SIGLEC12	89858	hgsc.bcm.edu	hg19	19	52004872	52004872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC12	NM_053003	exon1	c.G116T	p.C39F	GAGACACACAGGC	.	50.0	22.0	88.0	0.0	.	243	.	.	Atlas-SNP
SIGLEC6	946	hgsc.bcm.edu	hg19	19	52023460	52023460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC6	NM_198846	exon6	c.A1062T	p.X354C	CCAGCCTCAGCAG	.	49.0	17.0	73.0	0.0	.	142	.	.	Atlas-SNP
FPR1	2357	hgsc.bcm.edu	hg19	19	52249744	52249744	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FPR1	NM_001193306	exon3	c.T504A	p.P168P	TTTACCAGGTACT	.	48.0	24.0	54.0	0.0	.	64	.	.	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53644359	53644359	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF347	NM_001172675	exon5	c.T1725C	p.C575C	CTTGCCACACTCA	.	37.0	17.0	66.0	0.0	.	87	.	.	Atlas-SNP
ZNF677	342926	hgsc.bcm.edu	hg19	19	53741010	53741010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF677	NM_182609	exon5	c.T970G	p.C324G	TGCCACATATATT	.	72.0	40.0	99.0	0.0	.	94	.	.	Atlas-SNP
BIRC8	112401	hgsc.bcm.edu	hg19	19	53793261	53793261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC8	NM_033341	exon1	c.T367A	p.F123I	AATCAAATCCCAT	.	93.0	39.0	118.0	0.0	.	54	.	.	Atlas-SNP
DPRX	503834	hgsc.bcm.edu	hg19	19	54139945	54139945	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	DPRX,NS,carcinoma,0,1	DPRX	NM_001012728	exon3	c.T279A	p.G93G	AGAGGGTGGGGTC	.	65.0	25.0	98.0	0.0	.	34	.	.	Atlas-SNP
PRKCG	5582	hgsc.bcm.edu	hg19	19	54401219	54401219	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRKCG	NM_002739	exon10	c.C946A	p.R316R	CGGGTGCGGATGG	.	38.0	22.0	57.0	0.0	.	246	.	.	Atlas-SNP
CACNG7	59284	hgsc.bcm.edu	hg19	19	54444786	54444786	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNG7	NM_031896	exon4	c.A487C	p.R163R	ATGAACAGGCCCA	.	55.0	30.0	67.0	0.0	.	58	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55497556	55497556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon8	c.C2239A	p.L747I	CGGAACCTCTGCC	.	91.0	38.0	97.0	0.0	.	161	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55505725	55505725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon11	c.G2797T	p.G933W	GATCTGGGGCTGA	.	95.0	52.0	107.0	0.0	.	161	.	.	Atlas-SNP
NLRP2	55655	hgsc.bcm.edu	hg19	19	55505788	55505788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon11	c.T2860C	p.C954R	CCACTGTGCAACT	.	87.0	44.0	84.0	0.0	.	161	.	.	Atlas-SNP
GP6	51206	hgsc.bcm.edu	hg19	19	55538983	55538983	+	Missense_Mutation	SNP	C	C	A	rs41301959	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GP6	NM_016363	exon4	c.G573T	p.W191C	GGCTGACCACAGG	.	56.0	34.0	78.0	0.0	.	55	.	.	Atlas-SNP
RDH13	112724	hgsc.bcm.edu	hg19	19	55556516	55556516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RDH13	NM_001145971	exon7	c.A922G	p.R308G	AAAGCCTCCGGGC	.	80.0	21.0	119.0	0.0	.	43	.	.	Atlas-SNP
SYT5	6861	hgsc.bcm.edu	hg19	19	55689571	55689571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT5	NM_003180	exon3	c.T245C	p.I82T	TTGTCTATGTAAC	.	21.0	13.0	37.0	0.0	.	45	.	.	Atlas-SNP
ZNF471	57573	hgsc.bcm.edu	hg19	19	57036782	57036782	+	Missense_Mutation	SNP	A	A	C	rs372005205	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF471	NM_020813	exon5	c.A1346C	p.H449P	CTCAGCATCAAAG	.	38.0	32.0	91.0	0.0	.	99	.	.	Atlas-SNP
ZNF71	58491	hgsc.bcm.edu	hg19	19	57132817	57132817	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF71	NM_021216	exon3	c.A162T	p.A54A	AGGTGCAGAGTGG	.	42.0	37.0	125.0	0.0	.	69	.	.	Atlas-SNP
ZNF460	10794	hgsc.bcm.edu	hg19	19	57803168	57803168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF460	NM_006635	exon3	c.A1259G	p.Y420C	AGCCCTATGAGTG	.	54.0	51.0	91.0	0.0	.	59	.	.	Atlas-SNP
ZNF549	256051	hgsc.bcm.edu	hg19	19	58048776	58048776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF549	NM_001199295	exon4	c.T404G	p.V135G	CGTCTGTGGCCAG	.	93.0	68.0	159.0	0.0	.	118	.	.	Atlas-SNP
ZSCAN18	65982	hgsc.bcm.edu	hg19	19	58598367	58598367	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZSCAN18	NM_001145542	exon5	c.G819C	p.K273N	AAAGGACTTCAGC	.	17.0	16.0	27.0	0.0	.	104	.	.	Atlas-SNP
ZSCAN18	65982	hgsc.bcm.edu	hg19	19	58601546	58601546	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZSCAN18	NM_001145542	exon2	c.A257T	p.Q86L	TCCTGCTGGACTC	.	81.0	62.0	215.0	1.0	.	104	.	.	Atlas-SNP
SLC52A3	113278	hgsc.bcm.edu	hg19	20	744623	744623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_033409	exon3	c.G592T	p.A198S	GGAGGGCGGACAC	.	63.0	17.0	52.0	0.0	.	.	.	.	Atlas-SNP
SIRPB1	10326	hgsc.bcm.edu	hg19	20	1551660	1551660	+	Missense_Mutation	SNP	A	A	T	rs201191774	by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIRPB1	NM_006065	exon4	c.T875A	p.V292E	CGGGACACATTTC	.	145.0	40.0	96.0	0.0	.	83	.	A|1.000;G|0.000	Atlas-SNP
C20orf141	128653	hgsc.bcm.edu	hg19	20	2796253	2796253	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C20orf141	NM_080739	exon2	c.T330A	p.G110G	TGAAGGTCCTGGA	.	77.0	30.0	87.0	0.0	.	21	.	.	Atlas-SNP
DDRGK1	65992	hgsc.bcm.edu	hg19	20	3180750	3180750	+	Splice_Site	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDRGK1	NM_023935	exon5	c.409-2A>C	.	TCTGCCTGGAGAG	.	71.0	29.0	62.0	0.0	.	21	.	.	Atlas-SNP
SMOX	54498	hgsc.bcm.edu	hg19	20	4168039	4168039	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMOX	NM_001270691	exon8	c.C1743T	p.F581F	CCTCTTCCAGCAG	.	72.0	33.0	107.0	0.0	.	119	.	.	Atlas-SNP
SLC23A2	9962	hgsc.bcm.edu	hg19	20	4913132	4913132	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC23A2	NM_203327	exon3	c.A77T	p.E26V	TTTGCCTCGTCTT	.	83.0	30.0	81.0	0.0	.	62	.	.	Atlas-SNP
PLCB4	5332	hgsc.bcm.edu	hg19	20	9449299	9449299	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCB4	NM_001172646	exon35	c.G3330A	p.K1110K	TATCAAGAATAAA	.	37.0	11.0	35.0	0.0	.	204	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9546811	9546811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon5	c.T1211A	p.L404H	AGGCTGAGGGAGC	.	46.0	21.0	67.0	0.0	.	194	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9561478	9561478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon4	c.A304G	p.K102E	TTTCTTTCCTTAG	.	65.0	22.0	72.0	0.0	.	194	.	.	Atlas-SNP
PAK7	57144	hgsc.bcm.edu	hg19	20	9624845	9624845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	PAK7,mouth,carcinoma,0,1	PAK7	NM_177990	exon3	c.A132T	p.A44A	CGTATCTGCTAAC	.	87.0	35.0	107.0	0.0	.	194	.	.	Atlas-SNP
KIF16B	55614	hgsc.bcm.edu	hg19	20	16485049	16485049	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF16B	NM_001199865	exon10	c.A1144T	p.R382X	TCAGTCTGGCTAT	.	114.0	51.0	143.0	0.0	.	305	.	.	Atlas-SNP
CST9	128822	hgsc.bcm.edu	hg19	20	23586297	23586297	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CST9	NM_001008693	exon1	c.A205C	p.R69R	ACAGCCTGTAGGC	.	121.0	56.0	107.0	0.0	.	26	.	.	Atlas-SNP
HM13	81502	hgsc.bcm.edu	hg19	20	30102430	30102430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HM13	NM_178581	exon1	c.C76T	p.P26S	CGGCCGCCTTCCA	.	79.0	29.0	68.0	0.0	.	52	.	.	Atlas-SNP
FOXS1	2307	hgsc.bcm.edu	hg19	20	30432970	30432970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOXS1	NM_004118	exon1	c.C376T	p.P126S	TGGCGGGGCCCCG	.	27.0	13.0	27.0	0.0	.	29	.	.	Atlas-SNP
XKR7	343702	hgsc.bcm.edu	hg19	20	30585087	30585087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XKR7	NM_001011718	exon3	c.A1567T	p.I523F	CCTGTCATCCGGA	.	29.0	16.0	29.0	0.0	.	62	.	.	Atlas-SNP
BPIFA1	51297	hgsc.bcm.edu	hg19	20	31827623	31827623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_016583	exon4	c.A335G	p.D112G	TCACTGACCCCCA	.	104.0	34.0	104.0	0.0	.	.	.	.	Atlas-SNP
EDEM2	55741	hgsc.bcm.edu	hg19	20	33714169	33714169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EDEM2	NM_018217	exon8	c.A854G	p.K285R	ATGGCTTTGTTAT	.	68.0	26.0	99.0	0.0	.	46	.	.	Atlas-SNP
MMP24	10893	hgsc.bcm.edu	hg19	20	33839777	33839777	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP24	NM_006690	exon3	c.C465A	p.R155R	CAAGCGCTATGCC	.	67.0	33.0	87.0	0.0	.	35	.	.	Atlas-SNP
CEP250	11190	hgsc.bcm.edu	hg19	20	34065725	34065725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP250	NM_007186	exon17	c.C1893G	p.S631R	GTGCAGCAGAATG	.	97.0	48.0	118.0	0.0	.	141	.	.	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	hg19	20	35406236	35406236	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SOGA1	NM_199181	exon16	c.2994-2A>G	.	TCTGGCTCTCTTC	.	53.0	15.0	58.0	0.0	.	136	.	.	Atlas-SNP
SOGA1	140710	hgsc.bcm.edu	hg19	20	35423004	35423004	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SOGA1	NM_199181	exon15	c.2769-2A>T	.	TGGTTCTGCGAAG	.	66.0	35.0	77.0	0.0	.	136	.	.	Atlas-SNP
LPIN3	64900	hgsc.bcm.edu	hg19	20	39978721	39978721	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPIN3	NM_022896	exon7	c.C786G	p.S262S	CGAGTCCTCAGTG	.	81.0	29.0	82.0	0.0	.	69	.	.	Atlas-SNP
STK4	6789	hgsc.bcm.edu	hg19	20	43607128	43607128	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STK4	NM_006282	exon3	c.A161T	p.Q54L	CCGGCCAGATTGT	.	60.0	24.0	72.0	0.0	.	84	.	.	Atlas-SNP
SEMG2	6407	hgsc.bcm.edu	hg19	20	43851485	43851485	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMG2	NM_003008	exon2	c.T1212C	p.N404N	GGAAAATAAAATA	.	105.0	45.0	109.0	0.0	.	92	.	.	Atlas-SNP
SLC12A5	57468	hgsc.bcm.edu	hg19	20	44684872	44684872	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC12A5	NM_001134771	exon22	c.A2940G	p.E980E	CCCAGAAGAGACG	.	88.0	33.0	99.0	0.0	.	181	.	.	Atlas-SNP
CSE1L	1434	hgsc.bcm.edu	hg19	20	47675054	47675054	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSE1L	NM_001256135	exon2	c.A54G	p.T18T	GAAAACACTTGAT	.	52.0	29.0	68.0	0.0	.	83	.	.	Atlas-SNP
STX16	8675	hgsc.bcm.edu	hg19	20	57246218	57246218	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STX16	NM_001001433	exon7	c.A657G	p.T219T	TTTTACAGAGGAC	.	72.0	27.0	87.0	0.0	.	36	.	.	Atlas-SNP
PHACTR3	116154	hgsc.bcm.edu	hg19	20	58349384	58349384	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHACTR3	NM_080672	exon7	c.A1013T	p.E338V	GCAAGGAGAGGGA	.	99.0	36.0	85.0	0.0	.	104	.	.	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	hg19	20	58563998	58563998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH26	NM_177980	exon9	c.A1063G	p.I355V	CTCATCATTGTCG	.	70.0	29.0	64.0	0.0	.	229	.	.	Atlas-SNP
USP25	29761	hgsc.bcm.edu	hg19	21	17196476	17196476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP25	NM_013396	exon11	c.A1199G	p.Y400C	TTTTATATTTGGA	.	28.0	15.0	28.0	0.0	.	156	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19732132	19732132	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS15	NM_002772	exon8	c.A822G	p.T274T	ATAATATGTATTA	.	188.0	86.0	188.0	0.0	.	189	.	.	Atlas-SNP
NCAM2	4685	hgsc.bcm.edu	hg19	21	22782650	22782650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCAM2	NM_004540	exon10	c.A1252G	p.I418V	AATCCTATCAATA	.	322.0	144.0	353.0	0.0	.	220	.	.	Atlas-SNP
JAM2	58494	hgsc.bcm.edu	hg19	21	27062262	27062262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	JAM2	NM_021219	exon3	c.T218A	p.V73D	CCTTTGTCTACTA	.	25.0	19.0	35.0	0.0	.	33	.	.	Atlas-SNP
APP	351	hgsc.bcm.edu	hg19	21	27277345	27277345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	APP,NS,carcinoma,0,1	APP	NM_000484	exon15	c.A1954G	p.T652A	GTCGAGTGGTCAG	.	98.0	34.0	104.0	0.0	.	90	.	.	Atlas-SNP
ADAMTS5	11096	hgsc.bcm.edu	hg19	21	28306845	28306845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS5	NM_007038	exon4	c.A1629T	p.G543G	CCCCTTTCCACAA	.	83.0	38.0	114.0	0.0	.	184	.	.	Atlas-SNP
KRTAP11-1	337880	hgsc.bcm.edu	hg19	21	32253723	32253723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP11-1	NM_175858	exon1	c.T121G	p.C41G	GCAAACAGATGCC	.	109.0	45.0	113.0	0.0	.	46	.	.	Atlas-SNP
SETD4	54093	hgsc.bcm.edu	hg19	21	37408515	37408515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SETD4	NM_017438	exon11	c.T1223C	p.I408T	TGGTTTATCAGGG	.	86.0	35.0	100.0	0.0	.	37	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37572789	37572789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOPEY2	NM_005128	exon4	c.A481T	p.I161F	TCCGAGATCTCCG	.	31.0	14.0	27.0	0.0	.	184	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37605269	37605269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOPEY2	NM_005128	exon15	c.A2518G	p.S840G	TATAAGAGCTCTG	.	158.0	74.0	191.0	0.0	.	184	.	.	Atlas-SNP
HMGN1	3150	hgsc.bcm.edu	hg19	21	40720227	40720227	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMGN1	NM_004965	exon4	c.A117T	p.A39A	CGCTGCTGCCTTT	.	80.0	33.0	102.0	0.0	.	8	.	.	Atlas-SNP
PRDM15	63977	hgsc.bcm.edu	hg19	21	43281737	43281737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM15	NM_022115	exon7	c.A826C	p.M276L	TGTGCATGCTGGC	.	59.0	21.0	75.0	0.0	.	110	.	.	Atlas-SNP
KRTAP10-4	386672	hgsc.bcm.edu	hg19	21	45994365	45994365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP10-4	NM_198687	exon1	c.T730C	p.S244P	GTGTGCTCTGAGG	.	34.0	14.0	33.0	0.0	.	44	.	.	Atlas-SNP
KRTAP12-2	353323	hgsc.bcm.edu	hg19	21	46086475	46086475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP12-2	NM_181684	exon1	c.G329T	p.C110F	GGCCTGCAGCTCA	.	68.0	23.0	88.0	0.0	.	10	.	.	Atlas-SNP
COL6A2	1292	hgsc.bcm.edu	hg19	21	47552138	47552138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A2	NM_001849	exon28	c.T2732A	p.L911Q	AATACCTGAACTC	.	23.0	21.0	41.0	0.0	.	351	.	.	Atlas-SNP
C21orf58	54058	hgsc.bcm.edu	hg19	21	47735441	47735441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C21orf58	NM_058180	exon4	c.G391A	p.D131N	GGGCATCGTCCGG	.	35.0	28.0	77.0	0.0	.	25	.	.	Atlas-SNP
GNB1L	54584	hgsc.bcm.edu	hg19	22	19808139	19808139	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	GNB1L,NS,carcinoma,0,1	GNB1L	NM_053004	exon4	c.A236T	p.Q79L	CGCCCCTGGGGCA	.	82.0	32.0	107.0	0.0	.	34	.	.	Atlas-SNP
P2RX6	9127	hgsc.bcm.edu	hg19	22	21380894	21380894	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_005446	exon12	c.C1314A	p.S438S	CCATTCCGGGAGC	.	72.0	26.0	96.0	0.0	.	.	.	.	Atlas-SNP
PRAME	23532	hgsc.bcm.edu	hg19	22	22892325	22892325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRAME	NM_206954	exon5	c.T776C	p.M259T	TTAATCATCTGGC	.	80.0	32.0	75.0	0.0	.	78	.	.	Atlas-SNP
SUSD2	56241	hgsc.bcm.edu	hg19	22	24584255	24584255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUSD2	NM_019601	exon14	c.G2404A	p.A802T	GCGGTTGCGCTCG	.	31.0	18.0	36.0	0.0	.	68	.	.	Atlas-SNP
GGT5	2687	hgsc.bcm.edu	hg19	22	24629889	24629889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GGT5	NM_001099782	exon2	c.T257A	p.M86K	AGGCCCATGCTCT	.	111.0	54.0	101.0	0.0	.	61	.	.	Atlas-SNP
TMEM211	255349	hgsc.bcm.edu	hg19	22	25334227	25334227	+	Missense_Mutation	SNP	A	A	T	rs112354981	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM211	NM_001001663	exon2	c.T16A	p.W6R	GGAGCCAGCCTCC	.	33.0	16.0	26.0	0.0	.	16	.	A|0.500;G|0.500	Atlas-SNP
KIAA1671	85379	hgsc.bcm.edu	hg19	22	25581013	25581013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1671	NM_001145206	exon9	c.A5269G	p.S1757G	CCCAAGAGCCCCA	.	106.0	40.0	139.0	0.0	.	28	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26423048	26423048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO18B	NM_032608	exon43	c.A7108T	p.T2370S	CCGACCACACCCA	.	56.0	25.0	56.0	0.0	.	322	.	.	Atlas-SNP
SEZ6L	23544	hgsc.bcm.edu	hg19	22	26688929	26688929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEZ6L	NM_021115	exon2	c.A652T	p.R218W	CCCCAGAGGCCAG	.	84.0	38.0	156.0	0.0	.	174	.	.	Atlas-SNP
HPS4	89781	hgsc.bcm.edu	hg19	22	26849269	26849269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HPS4	NM_022081	exon14	c.A2057C	p.Q686P	CCATCCTGAGGGT	.	41.0	20.0	67.0	0.0	.	123	.	.	Atlas-SNP
CRYBB1	1414	hgsc.bcm.edu	hg19	22	26995533	26995533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRYBB1	NM_001887	exon6	c.A680T	p.Q227L	AGGGACTGCATCT	.	97.0	40.0	112.0	0.0	.	49	.	.	Atlas-SNP
CRYBA4	1413	hgsc.bcm.edu	hg19	22	27026355	27026355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRYBA4	NM_001886	exon6	c.A495T	p.E165D	GCTGGAATGCGAT	.	45.0	15.0	53.0	0.0	.	33	.	.	Atlas-SNP
CHEK2	11200	hgsc.bcm.edu	hg19	22	29130640	29130640	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHEK2	NM_145862	exon2	c.A70T	p.S24C	TAACGCTGCCATG	.	94.0	33.0	110.0	0.0	.	438	.	.	Atlas-SNP
MORC2	22880	hgsc.bcm.edu	hg19	22	31333654	31333654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MORC2	NM_014941	exon16	c.T1228C	p.S410P	TGGCAGAGAGGTA	.	44.0	19.0	38.0	0.0	.	78	.	.	Atlas-SNP
BPIFC	254240	hgsc.bcm.edu	hg19	22	32828474	32828474	+	Missense_Mutation	SNP	C	C	A	rs374301481	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_174932	exon10	c.G1035T	p.E345D	GGGAGGCTCTGTG	.	99.0	46.0	111.0	0.0	.	.	.	.	Atlas-SNP
SYN3	8224	hgsc.bcm.edu	hg19	22	32914296	32914296	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYN3	NM_003490	exon12	c.T1344C	p.P448P	GGGCTGAGGAGAC	.	25.0	12.0	22.0	0.0	.	77	.	.	Atlas-SNP
MYH9	4627	hgsc.bcm.edu	hg19	22	36684453	36684453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH9	NM_002473	exon34	c.G4777T	p.E1593X	CCATCTCCCGCAC	.	26.0	11.0	25.0	0.0	.	225	.	.	Atlas-SNP
EIF3D	8664	hgsc.bcm.edu	hg19	22	36920644	36920644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EIF3D	NM_003753	exon4	c.A305T	p.Q102L	CCTACCTGGGCAA	.	56.0	28.0	75.0	0.0	.	37	.	.	Atlas-SNP
ELFN2	114794	hgsc.bcm.edu	hg19	22	37769351	37769351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELFN2	NM_052906	exon3	c.A2224T	p.T742S	AGTAGGTGGAGTC	.	44.0	18.0	51.0	0.0	.	89	.	.	Atlas-SNP
MICALL1	85377	hgsc.bcm.edu	hg19	22	38318312	38318312	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MICALL1	NM_033386	exon6	c.C903A	p.P301P	CCGCCCCACCCCT	.	23.0	12.0	20.0	0.0	.	53	.	.	Atlas-SNP
APOBEC3D	140564	hgsc.bcm.edu	hg19	22	39421150	39421150	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APOBEC3D	NM_152426	exon3	c.A286C	p.R96R	GCTAACAGGCGCT	.	77.0	28.0	97.0	0.0	.	61	.	.	Atlas-SNP
TTLL1	25809	hgsc.bcm.edu	hg19	22	43459928	43459928	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTLL1	NM_012263	exon8	c.639-1G>T	.	TTGTACCTAGGAG	.	80.0	35.0	100.0	0.0	.	41	.	.	Atlas-SNP
PRR5-ARHGAP8	553158	hgsc.bcm.edu	hg19	22	45218295	45218295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRR5-ARHGAP8	NM_181334	exon9	c.A797T	p.E266V	TGAGTGAGCTCCA	.	66.0	26.0	118.0	0.0	.	53	.	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	hg19	22	46657787	46657787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKDREJ	NM_006071	exon1	c.T1433C	p.L478S	AGGAACAAAGAAA	.	54.0	26.0	73.0	0.0	.	195	.	.	Atlas-SNP
TBC1D22A	25771	hgsc.bcm.edu	hg19	22	47189485	47189485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBC1D22A	NM_014346	exon3	c.C207A	p.S69R	TACCAGCGATGCC	.	66.0	37.0	82.0	0.0	.	54	.	.	Atlas-SNP
MOV10L1	54456	hgsc.bcm.edu	hg19	22	50599429	50599429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MOV10L1	NM_018995	exon26	c.A3499G	p.T1167A	AGTATTACAAACG	.	115.0	41.0	147.0	0.0	.	238	.	.	Atlas-SNP
NLGN4X	57502	hgsc.bcm.edu	hg19	X	5810965	5810965	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLGN4X	NM_181332	exon6	c.A2344T	p.I782F	TTGGAATCATGGT	.	68.0	59.0	118.0	0.0	.	191	.	.	Atlas-SNP
FAM9A	171482	hgsc.bcm.edu	hg19	X	8767070	8767070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM9A	NM_174951	exon3	c.A157T	p.R53W	CCTTCCTGCTGCG	.	72.0	62.0	106.0	0.0	.	57	.	.	Atlas-SNP
TLR7	51284	hgsc.bcm.edu	hg19	X	12905637	12905637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR7	NM_016562	exon3	c.T2010G	p.F670L	AGTTTTTGATGGT	.	46.0	32.0	61.0	0.0	.	125	.	.	Atlas-SNP
TLR8	51311	hgsc.bcm.edu	hg19	X	12938413	12938413	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR8	NM_138636	exon2	c.C1254A	p.S418S	TTTCTCCAATCTG	.	40.0	38.0	55.0	0.0	.	134	.	.	Atlas-SNP
DDX53	168400	hgsc.bcm.edu	hg19	X	23019627	23019627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX53	NM_182699	exon1	c.A1453G	p.S485G	TTGTCAAGCGACT	.	80.0	74.0	115.0	0.0	.	76	.	.	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	hg19	X	37027900	37027900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM47C	NM_001013736	exon1	c.C1417T	p.H473Y	GTGTCCCATCTCT	.	50.0	46.0	54.0	0.0	.	267	.	.	Atlas-SNP
UBA1	7317	hgsc.bcm.edu	hg19	X	47074244	47074244	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBA1	NM_153280	exon26	c.G3093A	p.V1031V	CCACGTGCGGGCG	.	25.0	24.0	34.0	0.0	.	89	.	.	Atlas-SNP
SUV39H1	6839	hgsc.bcm.edu	hg19	X	48558575	48558575	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUV39H1	NM_003173	exon3	c.A259T	p.K87X	ATCCTCAAGCAGT	.	115.0	104.0	135.0	1.0	.	36	.	.	Atlas-SNP
GPR173	54328	hgsc.bcm.edu	hg19	X	53106453	53106453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR173	NM_018969	exon2	c.T650C	p.M217T	GCAAGATGAAGCC	.	30.0	27.0	20.0	0.0	.	66	.	.	Atlas-SNP
TRO	7216	hgsc.bcm.edu	hg19	X	54955840	54955840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRO	NM_001039705	exon12	c.A2683T	p.T895S	CTCAGCACCAGTG	.	43.0	43.0	55.0	0.0	.	246	.	.	Atlas-SNP
MTMR8	55613	hgsc.bcm.edu	hg19	X	63490847	63490847	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTMR8	NM_017677	exon13	c.G1588C	p.D530H	GCACATCTGTCTC	.	91.0	86.0	120.0	0.0	.	178	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66937427	66937427	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AR	NM_000044	exon5	c.A2281C	p.R761R	AACTCCAGGATGC	.	58.0	52.0	58.0	0.0	.	249	.	.	Atlas-SNP
RLIM	51132	hgsc.bcm.edu	hg19	X	73812565	73812565	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RLIM	NM_183353	exon5	c.A585T	p.S195S	TTCAGTTGAATTT	.	43.0	33.0	47.0	0.0	.	90	.	.	Atlas-SNP
ATRX	546	hgsc.bcm.edu	hg19	X	76938245	76938245	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATRX	NM_000489	exon9	c.A2503T	p.R835X	TGGTTCTGGCAGC	.	53.0	52.0	54.0	0.0	.	833	.	.	Atlas-SNP
BRWD3	254065	hgsc.bcm.edu	hg19	X	79979304	79979304	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRWD3	NM_153252	exon16	c.A1593G	p.T531T	AGAATCTGTGCAG	.	47.0	45.0	52.0	0.0	.	251	.	.	Atlas-SNP
RPS6KA6	27330	hgsc.bcm.edu	hg19	X	83390124	83390124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPS6KA6	NM_014496	exon7	c.T596G	p.L199R	GGCTTCAGGTCTC	.	260.0	233.0	301.0	0.0	.	116	.	.	Atlas-SNP
DACH2	117154	hgsc.bcm.edu	hg19	X	85769362	85769362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DACH2	NM_053281	exon3	c.G608T	p.G203V	TCCCAGGCCTCTT	.	197.0	176.0	224.0	0.0	.	263	.	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91873834	91873834	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH11X	NM_032968	exon7	c.C3939T	p.P1313P	TCATCCCAGTGAT	.	162.0	151.0	172.0	0.0	.	714	.	.	Atlas-SNP
ARMCX3	51566	hgsc.bcm.edu	hg19	X	100880234	100880234	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARMCX3	NM_016607	exon5	c.A265T	p.R89X	GGAACCAGAGCTA	.	30.0	29.0	37.0	0.0	.	33	.	.	Atlas-SNP
COL4A5	1287	hgsc.bcm.edu	hg19	X	107821343	107821343	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL4A5	NM_000495	exon12	c.T681A	p.G227G	CAAAGGTGAAAAA	.	159.0	145.0	192.0	0.0	.	262	.	.	Atlas-SNP
PAK3	5063	hgsc.bcm.edu	hg19	X	110391047	110391047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK3	NM_001128168	exon5	c.T467C	p.L156P	CTGTTCTAGATGT	.	250.0	223.0	244.0	0.0	.	179	.	.	Atlas-SNP
RBMXL3	139804	hgsc.bcm.edu	hg19	X	114424720	114424720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RBMXL3	NM_001145346	exon1	c.T716C	p.V239A	CGCGGGTCCGGGA	.	33.0	28.0	42.0	0.0	.	83	.	.	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	hg19	X	117722105	117722105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK11	NM_144658	exon17	c.A1801G	p.I601V	GATTGTATTACTT	.	47.0	45.0	54.0	0.0	.	185	.	.	Atlas-SNP
DOCK11	139818	hgsc.bcm.edu	hg19	X	117722147	117722147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK11	NM_144658	exon17	c.T1843G	p.C615G	AAGAATTGCCAAA	.	46.0	41.0	57.0	0.0	.	185	.	.	Atlas-SNP
IGSF1	3547	hgsc.bcm.edu	hg19	X	130419759	130419759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGSF1	NM_001555	exon4	c.C361A	p.L121I	ACTCTAGAACTTT	.	40.0	38.0	35.0	0.0	.	231	.	.	Atlas-SNP
PLAC1	10761	hgsc.bcm.edu	hg19	X	133700330	133700330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLAC1	NM_021796	exon3	c.G383T	p.C128F	ATGGAGCAGGGCT	.	76.0	70.0	70.0	0.0	.	17	.	.	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	hg19	X	134993960	134993960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAGE1	NM_018666	exon18	c.A2369C	p.N790T	CCAAAAACTACAG	.	75.0	68.0	84.0	0.0	.	160	.	.	Atlas-SNP
MAGEC2	51438	hgsc.bcm.edu	hg19	X	141291576	141291576	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAGEC2	NM_016249	exon3	c.T198A	p.P66P	CTCCTCAGGACCA	.	37.0	34.0	44.0	0.0	.	102	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144904336	144904336	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLITRK2	NM_001144005	exon5	c.A393T	p.L131L	CTTCCTAGGCCTG	.	58.0	52.0	102.0	0.0	.	221	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	hg19	X	147967466	147967466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AFF2	NM_002025	exon8	c.A1310T	p.E437V	ACCTTGAGCCTGT	.	48.0	43.0	55.0	0.0	.	679	.	.	Atlas-SNP
MTMR1	8776	hgsc.bcm.edu	hg19	X	149867740	149867740	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTMR1	NM_003828	exon2	c.A219G	p.S73S	AGGTTCAGTGACA	.	32.0	30.0	45.0	0.0	.	82	.	.	Atlas-SNP
DKC1	1736	hgsc.bcm.edu	hg19	X	153996705	153996705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DKC1	NM_001363	exon8	c.A769G	p.K257E	AGTGAAAAGGTAT	.	30.0	27.0	40.0	0.0	.	41	.	.	Atlas-SNP
CFHR1	3078	hgsc.bcm.edu	hg19	1	196799671	196799671	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CFHR1	NM_002113	exon5	c.648delT	p.N216fs	.	.	183.0	14.0	261.0	0.0	.	47	.	.	Atlas-INDEL
RB1	5925	hgsc.bcm.edu	hg19	13	48953748	48953748	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RB1	NM_000321	exon14	c.1350delT	p.V450fs	.	.	211.0	191.0	276.0	0.0	.	1068	.	.	Atlas-Indel,Pindel
RFPL4B	442247	hgsc.bcm.edu	hg19	6	112671556	112671556	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RFPL4B	NM_001013734	exon3	c.645delA	p.L215fs	.	.	49.0	28.0	45.0	0.0	.	36	.	.	Atlas-Indel,Pindel
BTG1	694	hgsc.bcm.edu	hg19	12	92539312	92539324	+	Frame_Shift_Del	DEL	GGGGGCGGCGTGC	GGGGGCGGCGTGC	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	GGGGGCGGCGTGC	GGGGGCGGCGTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BTG1	NM_001731	wholegene	.	.	.	.	44.0	19.0	43.0	0.0	.	30	.	.	Atlas-Indel,Pindel
EYS	346007	hgsc.bcm.edu	hg19	6	66204911	66204911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EYS	NM_001142801	exon4	c.394delG	p.G132fs	.	.	99.0	44.0	102.0	0.0	.	527	.	.	Atlas-Indel,Pindel
STON1-GTF2A1L	286749	hgsc.bcm.edu	hg19	2	48808054	48808054	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STON1-GTF2A1L	NM_001198593	exon2	c.281delT	p.I94fs	.	.	107.0	50.0	133.0	0.0	.	180	.	.	Atlas-Indel,Pindel
EML5	161436	hgsc.bcm.edu	hg19	14	89154769	89154769	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EML5	NM_183387	exon18	c.2589delT	p.N863fs	.	.	56.0	23.0	60.0	0.0	.	141	.	.	Atlas-Indel,Pindel
COL6A3	1293	hgsc.bcm.edu	hg19	2	238303641	238303641	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A3	NM_004369	exon3	c.299delA	p.Q100fs	.	.	129.0	63.0	156.0	0.0	.	608	.	.	Atlas-Indel,Pindel
CFH	3075	hgsc.bcm.edu	hg19	1	196714988	196714988	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CFH	NM_000186	exon21	c.3351delT	p.N1117fs	.	.	114.0	87.0	239.0	0.0	.	251	.	.	Atlas-Indel,Pindel
CCDC176	80127	hgsc.bcm.edu	hg19	14	74514746	74514757	+	In_Frame_Del	DEL	AAGAGAGTCATA	AAGAGAGTCATA	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	AAGAGAGTCATA	AAGAGAGTCATA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_025057	exon7	c.760_771del	p.254_257del	.	.	149.0	24.0	227.0	0.0	.	.	.	.	Atlas-Indel,Pindel
CDK5R2	8941	hgsc.bcm.edu	hg19	2	219825484	219825484	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDK5R2	NM_003936	exon1	c.941delA	p.D314fs	.	.	76.0	32.0	71.0	0.0	.	17	.	.	Atlas-Indel,Pindel
TRIM13	10206	hgsc.bcm.edu	hg19	13	50589218	50589250	+	RNA	DEL	AAAAAAAAAAAAAATATATATATATATATATAT	AAAAAAAAAAAAAATATATATATATATATATAT	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	AAAAAAAAAAAAAATATATATATATATATATAT	AAAAAAAAAAAAAATATATATATATATATATAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM13	.	.	.	.	.	.	23.0	15.0	30.0	0.0	.	30	.	.	Atlas-INDEL
PDZD4	57595	hgsc.bcm.edu	hg19	X	153073936	153073936	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDZD4	NM_032512	exon2	c.176delA	p.D59fs	.	.	46.0	40.0	99.0	0.0	.	67	.	.	Atlas-Indel,Pindel
LPPR4	0	hgsc.bcm.edu	hg19	1	99771914	99771914	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPPR4	NM_014839	exon7	c.1639delT	p.S547fs	.	.	69.0	36.0	101.0	0.0	.	143	.	.	Atlas-Indel,Pindel
PTPRB	5787	hgsc.bcm.edu	hg19	12	70983979	70983979	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRB	NM_001109754	exon8	c.1816delA	p.N606fs	.	.	111.0	38.0	152.0	0.0	.	676	.	.	Atlas-Indel,Pindel
HDAC6	10013	hgsc.bcm.edu	hg19	X	48681555	48681555	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HDAC6	NM_006044	exon25	c.2745delA	p.T915fs	.	.	67.0	31.0	70.0	0.0	.	111	.	.	Pindel
