Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CD1A	909	hgsc.bcm.edu	hg19	1	158225111	158225111	+	Missense_Mutation	SNP	G	G	A	rs139349958		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	CD1A	NM_001763	exon2	c.G296A	p.R99H	GAATTCGTAGATA	.	131.0	35.0	98.0	0.0	.	88	.	G|1.000;A|0.000	Atlas-SNP
C1orf35	79169	hgsc.bcm.edu	hg19	1	228289844	228289844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	C1orf35	NM_024319	exon6	c.G470A	p.G157E	CCGGGCCCGCCGC	.	72.0	14.0	50.0	0.0	.	17	.	.	Atlas-SNP
NLRP3	114548	hgsc.bcm.edu	hg19	1	247607349	247607349	+	Silent	SNP	G	G	A	rs201764635	alternate_allele	TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	NLRP3	NM_004895	exon7	c.G2745A	p.T915T	TCTCACGCACCTT	.	147.0	33.0	102.0	0.0	.	286	.	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	hg19	2	1926738	1926738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MYT1L	NM_015025	exon10	c.T803C	p.L268S	TGGGCTAATAGTT	.	124.0	25.0	124.0	0.0	.	241	.	.	Atlas-SNP
ASXL2	55252	hgsc.bcm.edu	hg19	2	25966699	25966699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ASXL2	NM_018263	exon12	c.C2507T	p.T836I	GGACCTGTTGGAG	.	83.0	37.0	88.0	0.0	.	217	.	.	Atlas-SNP
FOSL2	2355	hgsc.bcm.edu	hg19	2	28635208	28635208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	FOSL2	NM_005253	exon4	c.T874C	p.S292P	CAGGAGTCACCCG	.	42.0	12.0	50.0	0.0	.	39	.	.	Atlas-SNP
IL1RL2	8808	hgsc.bcm.edu	hg19	2	102808479	102808479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	IL1RL2	NM_003854	exon4	c.G388A	p.D130N	TTATCAGATGAGT	.	318.0	59.0	351.0	0.0	.	118	.	.	Atlas-SNP
MAP3K2	10746	hgsc.bcm.edu	hg19	2	128084382	128084382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MAP3K2	NM_006609	exon7	c.A478G	p.R160G	TATCTCTACTAGT	.	83.0	25.0	67.0	0.0	.	78	.	.	Atlas-SNP
ZRANB3	84083	hgsc.bcm.edu	hg19	2	136026637	136026637	+	Silent	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ZRANB3	NM_032143	exon11	c.A1281G	p.A427A	GTCTTCTGCTTGT	.	82.0	40.0	70.0	0.0	.	109	.	.	Atlas-SNP
WDR12	55759	hgsc.bcm.edu	hg19	2	203765765	203765765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	WDR12	NM_018256	exon3	c.A214G	p.M72V	TCTCCATTTCCAT	.	67.0	13.0	74.0	0.0	.	35	.	.	Atlas-SNP
IDH1	3417	hgsc.bcm.edu	hg19	2	209104688	209104688	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	IDH1	NM_005896	exon8	c.G890C	p.C297S	TCTGGACAAACCA	.	50.0	18.0	80.0	0.0	.	6310	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212251640	212251640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ERBB4	NM_005235	exon27	c.G3419T	p.S1140I	CGTGGGCTCCGTT	.	121.0	24.0	136.0	0.0	.	480	.	.	Atlas-SNP
XRCC5	7520	hgsc.bcm.edu	hg19	2	216977745	216977745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	XRCC5	NM_021141	exon2	c.G28A	p.V10I	GCAGCTGTTGTGC	.	89.0	19.0	97.0	0.0	.	64	.	.	Atlas-SNP
IGFBP5	3488	hgsc.bcm.edu	hg19	2	217559447	217559447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	IGFBP5	NM_000599	exon1	c.G52A	p.A18T	TCTGGGCCGGCCC	.	83.0	27.0	93.0	0.0	.	13	.	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220502908	220502908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	SLC4A3	NM_201574	exon18	c.T2870A	p.F957Y	GGGACTTTGGCAT	.	36.0	7.0	68.0	0.0	.	144	.	.	Atlas-SNP
ADCY5	111	hgsc.bcm.edu	hg19	3	123166784	123166784	+	Silent	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ADCY5	NM_183357	exon1	c.G609A	p.L203L	CAGGGACAGCACC	.	43.0	13.0	43.0	0.0	.	169	.	.	Atlas-SNP
TRIM42	287015	hgsc.bcm.edu	hg19	3	140406640	140406640	+	Silent	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	TRIM42	NM_152616	exon3	c.G1116A	p.K372K	GGCAAAGCGAAAA	.	137.0	47.0	200.0	0.0	.	143	.	.	Atlas-SNP
MECOM	2122	hgsc.bcm.edu	hg19	3	168840444	168840444	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MECOM	NM_004991	exon6	c.A902T	p.N301I	TTCCAGTTAAATG	.	95.0	32.0	130.0	0.0	.	216	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55595596	55595596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	KIT	NM_000222	exon14	c.G2086T	p.D696Y	CAGGAAGATCATG	.	66.0	16.0	74.0	0.0	.	7396	.	.	Atlas-SNP
C4orf26	152816	hgsc.bcm.edu	hg19	4	76489344	76489344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	C4orf26	NM_001257072	exon2	c.C88A	p.P30T	TTTACGCCTCCTG	.	79.0	12.0	87.0	0.0	.	24	.	.	Atlas-SNP
THAP9	79725	hgsc.bcm.edu	hg19	4	83827764	83827764	+	Silent	SNP	A	A	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	THAP9	NM_024672	exon3	c.A564T	p.L188L	TCTGCTACGAGCT	.	236.0	52.0	191.0	0.0	.	65	.	.	Atlas-SNP
DAB2	1601	hgsc.bcm.edu	hg19	5	39383019	39383019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	DAB2	NM_001343	exon10	c.G1042T	p.D348Y	TCTGGTCAAATTG	.	41.0	9.0	53.0	0.0	.	124	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86629119	86629119	+	Silent	SNP	A	A	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	RASA1	NM_002890	exon4	c.A864G	p.L288L	TATTCTACCTTAC	.	296.0	95.0	358.0	0.0	.	213	.	.	Atlas-SNP
BRD8	10902	hgsc.bcm.edu	hg19	5	137475827	137475827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	BRD8	NM_139199	exon27	c.A3644G	p.K1215R	GAGCCTTTTCTTT	.	105.0	13.0	110.0	0.0	.	192	.	.	Atlas-SNP
OR5V1	81696	hgsc.bcm.edu	hg19	6	29323776	29323776	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	OR5V1	NM_030876	exon1	c.T197G	p.L66W	AAGGCCAAGTTCC	.	150.0	34.0	107.0	0.0	.	63	.	.	Atlas-SNP
TRERF1	55809	hgsc.bcm.edu	hg19	6	42204142	42204142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	TRERF1	NM_033502	exon16	c.A2867T	p.E956V	TCTTCTTCACTTG	.	63.0	16.0	44.0	0.0	.	124	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90390402	90390402	+	Silent	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MDN1	NM_014611	exon74	c.G12171A	p.L4057L	CTTTGGCAAGCGA	.	55.0	23.0	76.0	0.0	.	478	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111694493	111694493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	REV3L	NM_002912	exon13	c.C5065A	p.Q1689K	TAGCTTGTCCTGG	.	77.0	38.0	90.0	0.0	.	386	.	.	Atlas-SNP
DLL1	28514	hgsc.bcm.edu	hg19	6	170592454	170592454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	DLL1	NM_005618	exon9	c.C1913T	p.A638V	TCCACCGCTGGGT	.	21.0	11.0	45.0	0.0	.	72	.	.	Atlas-SNP
SPAM1	6677	hgsc.bcm.edu	hg19	7	123599859	123599859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	SPAM1	NM_153189	exon5	c.G1366A	p.D456N	GCTGTTGATGTGT	.	111.0	25.0	81.0	0.0	.	195	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128478085	128478085	+	Silent	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	FLNC	NM_001127487	exon6	c.C1014A	p.V338V	TGCTGTCTCCTAT	.	82.0	22.0	71.0	0.0	.	339	.	.	Atlas-SNP
CPQ	10404	hgsc.bcm.edu	hg19	8	97978226	97978226	+	Missense_Mutation	SNP	G	G	T	rs373415893	alternate_allele	TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	.	NM_016134	exon5	c.G913T	p.G305C	GATGGCGGTGGAG	.	117.0	6.0	80.0	0.0	.	.	.	.	Atlas-SNP
NIPAL2	79815	hgsc.bcm.edu	hg19	8	99264768	99264768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	NIPAL2	NM_024759	exon3	c.G299A	p.G100E	GTCTCTCCCACGG	.	187.0	29.0	153.0	0.0	.	23	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139890313	139890313	+	Missense_Mutation	SNP	C	C	A	rs375895986	alternate_allele	TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	COL22A1	NM_152888	exon3	c.G338T	p.G113V	GTGTTGCCCCCGT	.	110.0	25.0	78.0	0.0	.	390	.	.	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	hg19	8	139890314	139890314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	COL22A1	NM_152888	exon3	c.G337T	p.G113C	TGTTGCCCCCGTG	.	110.0	25.0	79.0	0.0	.	390	.	.	Atlas-SNP
GPAA1	8733	hgsc.bcm.edu	hg19	8	145140996	145140996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	GPAA1	NM_003801	exon12	c.C1834A	p.L612M	TGCTGGCTGCTTT	.	36.0	5.0	41.0	0.0	.	40	.	.	Atlas-SNP
ALDH1B1	219	hgsc.bcm.edu	hg19	9	38396813	38396813	+	Silent	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ALDH1B1	NM_000692	exon2	c.C1068T	p.T356T	GGACACCCAGCAG	.	148.0	26.0	184.0	0.0	.	50	.	.	Atlas-SNP
TNFSF15	9966	hgsc.bcm.edu	hg19	9	117552930	117552930	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	TNFSF15	NM_005118	exon4	c.C558G	p.D186E	GTAGCTGTCTGTT	.	120.0	33.0	160.0	0.0	.	23	.	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131353846	131353846	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	SPTAN1	NM_003127	exon22	c.G3097T	p.E1033X	TCCCGGGAGAATC	.	81.0	13.0	108.0	0.0	.	266	.	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24508698	24508698	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	KIAA1217	NM_019590	exon2	c.C214G	p.P72A	GGGGGGCCCCGAA	.	153.0	38.0	186.0	0.0	.	235	.	.	Atlas-SNP
ARMC4	55130	hgsc.bcm.edu	hg19	10	28224053	28224053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ARMC4	NM_018076	exon16	c.G2381T	p.R794L	CATTTCCGGACAA	.	155.0	43.0	171.0	0.0	.	177	.	.	Atlas-SNP
ARHGAP22	58504	hgsc.bcm.edu	hg19	10	49654442	49654442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	ARHGAP22,NS,carcinoma,0,1	ARHGAP22	NM_001256024	exon10	c.C2137T	p.P713S	ACTTTGGGGCCCT	.	105.0	33.0	106.0	0.0	.	94	.	.	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	hg19	10	102770293	102770293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	PDZD7	NM_001195263	exon15	c.A2353C	p.S785R	CCCGGCTGCTGCG	.	397.0	44.0	385.0	0.0	.	101	.	.	Atlas-SNP
NLRP6	171389	hgsc.bcm.edu	hg19	11	280376	280376	+	Silent	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	NLRP6	NM_138329	exon4	c.G642A	p.K214K	CAAAAAGATCCTG	.	34.0	13.0	31.0	0.0	.	4	.	.	Atlas-SNP
KRTAP5-5	439915	hgsc.bcm.edu	hg19	11	1651253	1651253	+	Silent	SNP	C	C	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	KRTAP5-5	NM_001001480	exon1	c.C183G	p.G61G	CTCCGGCTGCTGT	.	161.0	23.0	144.0	0.0	.	86	.	.	Atlas-SNP
RRM1	6240	hgsc.bcm.edu	hg19	11	4127292	4127292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	RRM1	NM_001033	exon3	c.A125G	p.K42R	CCATGAAAGTAAT	.	104.0	19.0	82.0	0.0	.	31	.	.	Atlas-SNP
CHRM4	1132	hgsc.bcm.edu	hg19	11	46407264	46407264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	CHRM4	NM_000741	exon1	c.C844T	p.P282S	GTGGCGGTGGCAG	.	41.0	15.0	59.0	0.0	.	47	.	.	Atlas-SNP
CATSPER1	117144	hgsc.bcm.edu	hg19	11	65787820	65787820	+	Silent	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	CATSPER1	NM_053054	exon8	c.C2032T	p.L678L	TGAACAGCGCCGT	.	71.0	15.0	77.0	0.0	.	101	.	.	Atlas-SNP
RNF121	55298	hgsc.bcm.edu	hg19	11	71640151	71640151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	RNF121	NM_018320	exon1	c.G44A	p.G15E	CTGCTGGGGAACG	.	99.0	13.0	80.0	0.0	.	19	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105795410	105795410	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	GRIA4	NM_001077243	exon12	c.C1762T	p.Q588X	AGCGACCAGCCTC	.	174.0	30.0	215.0	0.0	.	380	.	.	Atlas-SNP
ALG9	79796	hgsc.bcm.edu	hg19	11	111706981	111706981	+	Silent	SNP	A	A	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ALG9	NM_024740	exon14	c.T1509A	p.G503G	TAACTGACCTCTG	.	62.0	21.0	101.0	0.0	.	77	.	.	Atlas-SNP
USP5	8078	hgsc.bcm.edu	hg19	12	6972521	6972521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	USP5	NM_001098536	exon15	c.C1934T	p.P645L	GCTCCCCTCACTT	.	77.0	40.0	111.0	0.0	.	124	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46246680	46246680	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ARID2	NM_152641	exon15	c.4773+1G>T	.	CCGCAGGTAAGTT	.	37.0	18.0	53.0	0.0	.	311	.	.	Atlas-SNP
LMBR1L	55716	hgsc.bcm.edu	hg19	12	49498238	49498238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	LMBR1L_ENST00000267102,bladder,carcinoma,0,2	LMBR1L	NM_018113	exon5	c.C428T	p.S143F	TTTCTGGAGCCAG	.	103.0	18.0	118.0	0.0	.	61	.	.	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	hg19	12	71977548	71977548	+	Silent	SNP	T	T	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	LGR5	NM_003667	exon18	c.T1758G	p.P586P	ATCCCCTCTGTAC	.	122.0	41.0	144.0	0.0	.	103	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112673514	112673514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	.	NM_001109662	exon36	c.G5117A	p.R1706H	GACGGGCGTTGGT	.	94.0	12.0	99.0	0.0	.	.	.	.	Atlas-SNP
PROSER1	80209	hgsc.bcm.edu	hg19	13	39587872	39587872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	.	NM_025138	exon11	c.A1517G	p.Q506R	GAGTTCTGAAGAG	.	61.0	16.0	111.0	0.0	.	.	.	.	Atlas-SNP
DCT	1638	hgsc.bcm.edu	hg19	13	95112447	95112447	+	Silent	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	DCT	NM_001129889	exon6	c.G1077A	p.G359G	CAGAGTCCCATCT	.	272.0	41.0	228.0	0.0	.	186	.	.	Atlas-SNP
MCF2L	23263	hgsc.bcm.edu	hg19	13	113741578	113741578	+	Silent	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MCF2L	NM_001112732	exon22	c.G2403A	p.L801L	GCTGCTGATGCAG	.	113.0	13.0	124.0	0.0	.	182	.	.	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	hg19	14	102881064	102881064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	TECPR2	NM_001172631	exon5	c.A572G	p.Q191R	CTCTGCAAAGAAG	.	116.0	38.0	105.0	0.0	.	114	.	.	Atlas-SNP
TMEM62	80021	hgsc.bcm.edu	hg19	15	43473452	43473452	+	Silent	SNP	A	A	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	TMEM62	NM_024956	exon13	c.A1560G	p.G520G	TAATGGACATTTC	.	59.0	7.0	72.0	0.0	.	47	.	.	Atlas-SNP
MNS1	55329	hgsc.bcm.edu	hg19	15	56736725	56736725	+	Silent	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MNS1	NM_018365	exon5	c.A603G	p.K201K	CTGCTTTTTTTTT	.	46.0	6.0	52.0	0.0	.	39	.	.	Atlas-SNP
DPP8	54878	hgsc.bcm.edu	hg19	15	65799617	65799617	+	Silent	SNP	T	T	C	rs377607090	alternate_allele	TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	DPP8	NM_197960	exon4	c.A384G	p.L128L	GAGCATTAAGACT	.	89.0	12.0	76.0	0.0	.	78	.	.	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18937327	18937327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	SMG1	NM_015092	exon1	c.G37A	p.G13S	CGCCGCCGCTGCT	.	86.0	5.0	88.0	0.0	.	401	.	.	Atlas-SNP
TRIM72	493829	hgsc.bcm.edu	hg19	16	31226434	31226434	+	Silent	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	TRIM72	NM_001008274	exon2	c.C375T	p.A125A	CGAGGCCCACGCA	.	25.0	8.0	20.0	0.0	.	32	.	.	Atlas-SNP
GSE1	23199	hgsc.bcm.edu	hg19	16	85690011	85690011	+	Missense_Mutation	SNP	G	G	A	rs374600357		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	.	NM_014615	exon7	c.G1052A	p.R351H	GTGAGCGTGAGGC	.	143.0	27.0	196.0	0.0	.	.	.	.	Atlas-SNP
SCARF1	8578	hgsc.bcm.edu	hg19	17	1543920	1543920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	SCARF1	NM_145350	exon5	c.A832G	p.T278A	TGCCTGTGTCTGG	.	131.0	57.0	204.0	0.0	.	46	.	.	Atlas-SNP
KRTAP4-1	85285	hgsc.bcm.edu	hg19	17	39340971	39340971	+	Missense_Mutation	SNP	G	G	T	rs375189286	alternate_allele	TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	KRTAP4-1	NM_033060	exon1	c.C136A	p.R46S	ATGGGCGGCAGCA	.	124.0	38.0	114.0	0.0	.	58	.	.	Atlas-SNP
ACLY	47	hgsc.bcm.edu	hg19	17	40030078	40030078	+	Silent	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ACLY	NM_001096	exon23	c.C2628T	p.L876L	GAACCAGAGGAGG	.	51.0	9.0	44.0	0.0	.	85	.	.	Atlas-SNP
KAT7	11143	hgsc.bcm.edu	hg19	17	47875714	47875714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	.	NM_007067	exon4	c.C374T	p.P125L	AGTCACCGCCTCG	.	111.0	5.0	80.0	0.0	.	.	.	.	Atlas-SNP
C17orf64	124773	hgsc.bcm.edu	hg19	17	58506757	58506757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	C17orf64,NS,carcinoma,0,1	C17orf64	NM_181707	exon5	c.C464A	p.S155Y	AGAGGTCCTTGCT	.	171.0	53.0	139.0	1.0	.	19	.	.	Atlas-SNP
GAA	2548	hgsc.bcm.edu	hg19	17	78092487	78092487	+	Silent	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	GAA	NM_001079803	exon20	c.T2682C	p.S894S	GACCAGTGAGGGA	.	56.0	11.0	60.0	0.0	.	66	.	.	Atlas-SNP
FBXO15	201456	hgsc.bcm.edu	hg19	18	71791775	71791775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	FBXO15	NM_001142958	exon7	c.A944G	p.N315S	TGAAGATTTGCCA	.	116.0	48.0	157.0	0.0	.	97	.	.	Atlas-SNP
RDH8	50700	hgsc.bcm.edu	hg19	19	10129559	10129559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	RDH8	NM_015725	exon3	c.G475A	p.V159M	ATCGTGGTGATCA	.	88.0	34.0	93.0	0.0	.	51	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11138584	11138584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	SMARCA4	NM_003072	exon24	c.G3340A	p.D1114N	ATGGAAGATTACT	.	131.0	24.0	115.0	0.0	.	502	.	.	Atlas-SNP
ZNF701	55762	hgsc.bcm.edu	hg19	19	53086589	53086589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ZNF701	NM_001172655	exon5	c.C1475A	p.A492E	ACCTTGCATGTCA	.	188.0	8.0	245.0	0.0	.	44	.	.	Atlas-SNP
ZNF701	55762	hgsc.bcm.edu	hg19	19	53086622	53086622	+	Missense_Mutation	SNP	C	C	G	rs142390931	byfrequency;alternate_allele	TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ZNF701	NM_001172655	exon5	c.C1508G	p.P503R	AGAAACCTTACAA	.	227.0	11.0	274.0	0.0	.	44	.	C|1.000;T|0.000	Atlas-SNP
ZNF701	55762	hgsc.bcm.edu	hg19	19	53086658	53086658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	ZNF701,NS,carcinoma,0,1	ZNF701	NM_001172655	exon5	c.G1544A	p.R515Q	TTAATCGAAAATC	.	242.0	28.0	315.0	0.0	.	44	.	.	Atlas-SNP
ZNF701	55762	hgsc.bcm.edu	hg19	19	53086659	53086659	+	Silent	SNP	A	A	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	ZNF701	NM_001172655	exon5	c.A1545C	p.R515R	TAATCGAAAATCA	.	242.0	28.0	314.0	0.0	.	44	.	.	Atlas-SNP
HSPBP1	23640	hgsc.bcm.edu	hg19	19	55790902	55790902	+	Silent	SNP	C	C	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	HSPBP1	NM_012267	exon2	c.G75C	p.G25G	GCCGCCCCCTGAA	.	75.0	5.0	64.0	0.0	.	24	.	.	Atlas-SNP
MATN4	8785	hgsc.bcm.edu	hg19	20	43934157	43934157	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MATN4	NM_030592	exon2	c.G66C	p.Q22H	TGTCAACTGGAGC	.	48.0	16.0	35.0	0.0	.	57	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41725589	41725589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	DSCAM	NM_001271534	exon5	c.G737T	p.C246F	GCTTTGCAAGGCA	.	52.0	9.0	51.0	0.0	.	347	.	.	Atlas-SNP
GNAZ	2781	hgsc.bcm.edu	hg19	22	23438485	23438485	+	Silent	SNP	C	C	T	rs375941406		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	GNAZ,NS,carcinoma,0,1	GNAZ	NM_002073	exon2	c.C603T	p.D201D	GGTGGACGTGGGG	.	36.0	14.0	44.0	0.0	.	45	.	.	Atlas-SNP
GATSL3	652968	hgsc.bcm.edu	hg19	22	30683518	30683518	+	Silent	SNP	A	A	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	GATSL3	NM_001037666	exon3	c.T216G	p.A72A	GGCCTCAGCTACT	.	42.0	17.0	49.0	0.0	.	14	.	.	Atlas-SNP
SHROOM4	57477	hgsc.bcm.edu	hg19	X	50350752	50350752	+	Silent	SNP	T	T	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	SHROOM4	NM_020717	exon6	c.A3390G	p.Q1130Q	CTCCTGTTGCTTC	.	24.0	5.0	39.0	0.0	.	171	.	.	Atlas-SNP
MAGEC3	139081	hgsc.bcm.edu	hg19	X	140969562	140969562	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MAGEC3	NM_138702	exon4	c.G889T	p.E297X	ATCTGGGAAGTGC	.	58.0	27.0	66.0	0.0	.	228	.	.	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53499478	53499479	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	RBL2	NM_005611	exon13	c.1827_1828insA	p.I609fs	.	.	178.0	96.0	189.0	0.0	.	115	.	.	Atlas-INDEL
MYRF	745	hgsc.bcm.edu	hg19	11	61533636	61533637	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	.	NM_001127392	exon3	c.341_342insC	p.F114fs	.	.	66.0	10.0	75.0	0.0	.	.	.	.	Atlas-INDEL
DNM2	1785	hgsc.bcm.edu	hg19	19	10940881	10940882	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.,4	DNM2	NM_001005361	exon20	c.2370_2371insC	p.G790fs	.	.	80.0	25.0	92.0	0.0	.	175	.	.	Atlas-INDEL
MBL2	4153	hgsc.bcm.edu	hg19	10	54528080	54528115	+	In_Frame_Del	DEL	ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG	ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG	-	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG	ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	MBL2	NM_000242	exon4	c.530_565del	p.177_189del	.	.	114.0	10.0	104.0	0.0	.	55	.	.	Atlas-INDEL
USP6NL	9712	hgsc.bcm.edu	hg19	10	11505654	11505655	+	In_Frame_Ins	INS	-	-	CGT	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	USP6NL	NM_001080491	exon14	c.1324_1325insACG	p.P442delinsTP	.	.	83.0	19.0	106.0	0.0	.	57	.	.	Atlas-INDEL
TDRD1	56165	hgsc.bcm.edu	hg19	10	115977409	115977419	+	Frame_Shift_Del	DEL	TTGCAGGTAAG	TTGCAGGTAAG	-	novel		TCGA-UB-AA0U-01A-11D-A382-10	TCGA-UB-AA0U-10A-01D-A385-10	TTGCAGGTAAG	TTGCAGGTAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	86952660-bb3d-44f2-b8c2-842213a5fb20	d47d2cb3-bc69-4675-826a-152e65b30482	.	TDRD1	NM_198795	exon17	c.2317_2323del	p.773_775del	.	.	184.0	18.0	184.0	0.0	.	126	.	.	Atlas-INDEL
