Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIAA2013	90231	hgsc.bcm.edu	hg19	1	11985677	11985677	+	Silent	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	KIAA2013	NM_138346	exon1	c.C618A	p.I206I	GAGCTGGATGCGC	.	85.0	26.0	73.0	0.0	.	25	.	.	Atlas-SNP
TIE1	7075	hgsc.bcm.edu	hg19	1	43774664	43774664	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	TIE1	NM_005424	exon8	c.C1050T	p.I350I	CCGGATCCCCCAG	.	320.0	15.0	203.0	0.0	.	132	.	.	Atlas-SNP
CYP4A11	1579	hgsc.bcm.edu	hg19	1	47401258	47401258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CYP4A11	NM_000778	exon5	c.T572C	p.L191S	GTCATCAAGGAGA	.	388.0	158.0	409.0	1.0	.	77	.	.	Atlas-SNP
LMO4	8543	hgsc.bcm.edu	hg19	1	87797781	87797781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	LMO4	NM_006769	exon2	c.G83T	p.G28V	GCGGGGGCAAGAT	.	87.0	43.0	110.0	0.0	.	21	.	.	Atlas-SNP
PHGDH	26227	hgsc.bcm.edu	hg19	1	120286648	120286648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PHGDH	NM_006623	exon12	c.C1587G	p.F529L	AGCCTTCCAGTTC	.	94.0	40.0	94.0	0.0	.	51	.	.	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	hg19	1	145304611	145304611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	NBPF10	NM_001039703	exon10	c.C1544T	p.S515F	GCTCATCCTCTCA	.	462.0	75.0	194.0	0.0	.	221	.	.	Atlas-SNP
CD1A	909	hgsc.bcm.edu	hg19	1	158225110	158225110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	CD1A,right_lower_lobe,carcinoma,0,1	CD1A	NM_001763	exon2	c.C295G	p.R99G	GGAATTCGTAGAT	.	141.0	34.0	77.0	0.0	.	88	.	.	Atlas-SNP
OR10Z1	128368	hgsc.bcm.edu	hg19	1	158576910	158576910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	OR10Z1	NM_001004478	exon1	c.A682G	p.I228V	CTGAGGATCCCCT	.	112.0	36.0	56.0	0.0	.	99	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181724436	181724436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CACNA1E	NM_001205293	exon28	c.C3892G	p.L1298V	TACAAGCTCTTCA	.	111.0	33.0	54.0	0.0	.	778	.	.	Atlas-SNP
ELK4	2005	hgsc.bcm.edu	hg19	1	205589082	205589082	+	Silent	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	ELK4_ENST00000289703,colon,carcinoma,0,1	ELK4	NM_021795	exon3	c.G1092T	p.S364S	AAAGAGCGAGCAA	.	143.0	42.0	93.0	0.0	.	45	.	.	Atlas-SNP
SLC26A9	115019	hgsc.bcm.edu	hg19	1	205886474	205886474	+	Silent	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SLC26A9	NM_134325	exon20	c.G2265T	p.G755G	AGCATCCCCTGGA	.	74.0	23.0	70.0	0.0	.	176	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208257756	208257756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PLXNA2	NM_025179	exon10	c.A2267G	p.N756S	GAGCTGTTGAAGC	.	103.0	59.0	90.0	0.0	.	178	.	.	Atlas-SNP
RPS6KC1	26750	hgsc.bcm.edu	hg19	1	213403855	213403855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	RPS6KC1	NM_012424	exon9	c.G1060A	p.D354N	GTAATGGACACAA	.	122.0	29.0	82.0	0.0	.	114	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216420308	216420308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	USH2A	NM_007123	exon13	c.G2428T	p.A810S	TCTTAGCATTACA	.	224.0	73.0	127.0	0.0	.	1168	.	.	Atlas-SNP
OR2T4	127074	hgsc.bcm.edu	hg19	1	248524962	248524962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	OR2T4	NM_001004696	exon1	c.A80C	p.H27P	CCAAACATCCAAT	.	361.0	91.0	253.0	0.0	.	126	.	.	Atlas-SNP
KIAA1841	84542	hgsc.bcm.edu	hg19	2	61297534	61297534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	KIAA1841	NM_032506	exon3	c.C49G	p.Q17E	AATAACCAAATGG	.	98.0	40.0	93.0	0.0	.	95	.	.	Atlas-SNP
APLF	200558	hgsc.bcm.edu	hg19	2	68753315	68753315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	APLF	NM_173545	exon6	c.C745A	p.Q249K	GCAGAACAAGACA	.	273.0	137.0	250.0	0.0	.	69	.	.	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	hg19	2	182388920	182388920	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ITGA4	NM_000885	exon20	c.A2192T	p.D731V	TCCTGGATGTGAG	.	141.0	54.0	165.0	0.0	.	142	.	.	Atlas-SNP
FAM171B	165215	hgsc.bcm.edu	hg19	2	187626928	187626928	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	FAM171B	NM_177454	exon8	c.G1859A	p.W620X	CAGATTGGAGCCG	.	93.0	35.0	86.0	0.0	.	146	.	.	Atlas-SNP
RAPH1	65059	hgsc.bcm.edu	hg19	2	204354655	204354655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	RAPH1	NM_213589	exon4	c.G384T	p.L128F	ATGTTTCAATGTA	.	118.0	49.0	119.0	0.0	.	118	.	.	Atlas-SNP
UGT1A9	54600	hgsc.bcm.edu	hg19	2	234580748	234580748	+	Silent	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	UGT1A9,NS,carcinoma,0,1	UGT1A9	NM_021027	exon1	c.T168C	p.V56V	GGTGGTTGTAGTC	.	73.0	29.0	79.0	0.0	.	79	.	.	Atlas-SNP
OXTR	5021	hgsc.bcm.edu	hg19	3	8794828	8794828	+	Silent	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	OXTR	NM_000916	exon4	c.C1005T	p.H335H	GAAGAGGTGGCCC	.	117.0	45.0	126.0	0.0	.	31	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38080872	38080872	+	Silent	SNP	T	T	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DLEC1	NM_007337	exon1	c.T156A	p.S52S	CTACTCTGAGGCC	.	130.0	53.0	157.0	0.0	.	278	.	.	Atlas-SNP
MST1	4485	hgsc.bcm.edu	hg19	3	49725184	49725184	+	Missense_Mutation	SNP	G	G	A	rs191996618	bycluster	TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	MST1,trunk,malignant_melanoma,0,1	MST1	NM_020998	exon2	c.C241T	p.R81W	CTCACCGGCAGTC	.	73.0	5.0	93.0	2.0	.	84	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89480381	89480381	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	EPHA3	NM_005233	exon13	c.A2218T	p.M740L	TCAGACATGGGCT	.	106.0	43.0	91.0	0.0	.	501	.	.	Atlas-SNP
FAM162A	26355	hgsc.bcm.edu	hg19	3	122126169	122126169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	FAM162A	NM_014367	exon4	c.A305C	p.K102T	GAGTGAAGATCAG	.	66.0	27.0	68.0	0.0	.	18	.	.	Atlas-SNP
PLXNA1	5361	hgsc.bcm.edu	hg19	3	126726661	126726661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PLXNA1	NM_032242	exon8	c.G2017T	p.G673C	GTCAACGGCTCCT	.	27.0	20.0	42.0	0.0	.	185	.	.	Atlas-SNP
TBC1D1	23216	hgsc.bcm.edu	hg19	4	38138875	38138875	+	Silent	SNP	G	G	A	rs375379532		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	TBC1D1	NM_015173	exon20	c.G3426A	p.T1142T	GCAGACGGTGGAG	.	138.0	44.0	109.0	0.0	.	94	.	.	Atlas-SNP
PHOX2B	8929	hgsc.bcm.edu	hg19	4	41748004	41748004	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PHOX2B	NM_003924	exon3	c.G765A	p.A255A	CGCTGCCGCTGCC	.	141.0	69.0	99.0	0.0	.	53	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79350344	79350344	+	Silent	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	FRAS1	NM_001166133	exon36	c.C4807A	p.R1603R	GCTCCACGGCTGG	.	53.0	22.0	50.0	0.0	.	779	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79432632	79432632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	FRAS1_ENST00000264895,NS,carcinoma,0,2	FRAS1	NM_025074	exon64	c.G9985A	p.D3329N	TACCTGGATGTCA	.	118.0	51.0	107.0	0.0	.	779	.	.	Atlas-SNP
QRFPR	84109	hgsc.bcm.edu	hg19	4	122250606	122250606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	QRFPR	NM_198179	exon6	c.A1159G	p.K387E	CTCCTTTGGTTTC	.	123.0	55.0	107.0	0.0	.	65	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123179983	123179983	+	Silent	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	KIAA1109	NM_015312	exon40	c.T6747C	p.S2249S	TGACTCTGCATTA	.	75.0	26.0	81.0	0.0	.	424	.	.	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	hg19	5	5235288	5235288	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ADAMTS16	NM_139056	exon13	c.C2012G	p.T671S	CTTACACTCAAGT	.	108.0	52.0	111.0	0.0	.	543	.	.	Atlas-SNP
CDH10	1008	hgsc.bcm.edu	hg19	5	24537662	24537662	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CDH10	NM_006727	exon3	c.A353T	p.D118V	TCCCTATCAATTC	.	84.0	46.0	92.0	0.0	.	391	.	.	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79032250	79032250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CMYA5	NM_153610	exon2	c.G7662T	p.Q2554H	GAAGCAGCAGGAA	.	98.0	35.0	86.0	0.0	.	643	.	.	Atlas-SNP
CTNNA1	1495	hgsc.bcm.edu	hg19	5	138260300	138260300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CTNNA1	NM_001903	exon12	c.G1648T	p.A550S	CGGGCAGCCCGGG	.	113.0	55.0	153.0	0.0	.	114	.	.	Atlas-SNP
PCDHA6	56142	hgsc.bcm.edu	hg19	5	140208117	140208117	+	Silent	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PCDHA6	NM_018909	exon1	c.G441A	p.L147L	TAGGCTGCCAGAT	.	129.0	63.0	148.0	0.0	.	442	.	.	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	hg19	5	161576316	161576316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	GABRG2	NM_198903	exon9	c.C1245G	p.N415K	GAAAAACCCTGTA	.	72.0	28.0	52.0	0.0	.	142	.	.	Atlas-SNP
RANBP17	64901	hgsc.bcm.edu	hg19	5	170319441	170319441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	RANBP17	NM_022897	exon4	c.G307T	p.V103F	CCCTTTGTCATCC	.	110.0	51.0	124.0	0.0	.	108	.	.	Atlas-SNP
SCUBE3	222663	hgsc.bcm.edu	hg19	6	35211877	35211877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SCUBE3	NM_152753	exon17	c.G2209A	p.A737T	GAAGGGGCCATTT	.	69.0	31.0	79.0	0.0	.	99	.	.	Atlas-SNP
MOCS1	4337	hgsc.bcm.edu	hg19	6	39876849	39876849	+	Missense_Mutation	SNP	G	G	A	rs149586823	bycluster;alternate_allele	TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	MOCS1_ENST00000340692,NS,carcinoma,0,2	MOCS1	NM_005943	exon9	c.C1132T	p.R378W	TGGGCCGGTTCTT	.	63.0	36.0	74.0	0.0	.	87	.	G|1.000;C|0.000	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79692616	79692616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PHIP	NM_017934	exon23	c.A2756T	p.E919V	TTTCTTTCTTTGG	.	18.0	10.0	19.0	0.0	.	177	.	.	Atlas-SNP
PHIP	55023	hgsc.bcm.edu	hg19	6	79727210	79727210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PHIP	NM_017934	exon11	c.A1085T	p.E362V	TGAAACTCCAATT	.	236.0	96.0	218.0	0.0	.	177	.	.	Atlas-SNP
TWISTNB	221830	hgsc.bcm.edu	hg19	7	19748398	19748398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	TWISTNB	NM_001002926	exon1	c.G242A	p.R81H	GAATAGCGAAGGA	.	56.0	31.0	48.0	0.0	.	63	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20698196	20698196	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	ABCB5_ENST00000443026,NS,carcinoma,0,3	ABCB5	NM_001163941	exon14	c.T1604G	p.I535S	TCGCAATTGCTCG	.	67.0	30.0	66.0	0.0	.	357	.	.	Atlas-SNP
TBX20	57057	hgsc.bcm.edu	hg19	7	35242082	35242082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	TBX20_ENST00000408931,colon,carcinoma,0,1	TBX20	NM_001077653	exon8	c.G1304A	p.G435E	CGTAGTCCTTGAA	.	160.0	53.0	123.0	1.0	.	96	.	.	Atlas-SNP
NACAD	23148	hgsc.bcm.edu	hg19	7	45122346	45122346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	NACAD	NM_001146334	exon2	c.A3433G	p.T1145A	CCTCTGTGGCCAC	.	82.0	28.0	82.0	0.0	.	44	.	.	Atlas-SNP
ASL	435	hgsc.bcm.edu	hg19	7	65557597	65557597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ASL	NM_000048	exon16	c.G1197T	p.E399D	GGCCGAGACCAAG	.	54.0	25.0	59.0	0.0	.	39	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PODXL	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	76.0	7.0	78.0	0.0	.	53	.	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138552730	138552730	+	Silent	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	KIAA1549	NM_020910	exon15	c.C4920T	p.I1640I	GCATCCGATGTAG	.	41.0	21.0	44.0	0.0	.	314	.	.	Atlas-SNP
C7orf33	202865	hgsc.bcm.edu	hg19	7	148288121	148288121	+	Missense_Mutation	SNP	G	G	A	rs142396932		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	C7orf33	NM_145304	exon1	c.G104A	p.R35Q	GGCGCCGGATTGA	.	91.0	35.0	114.0	0.0	.	28	.	G|1.000;A|0.000	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69032459	69032459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	PREX2,NS,neuroblastoma,0,1	PREX2	NM_024870	exon29	c.G3533C	p.G1178A	TAAAAGGGCAGGC	.	75.0	37.0	96.0	0.0	.	614	.	.	Atlas-SNP
CNGB3	54714	hgsc.bcm.edu	hg19	8	87616352	87616352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CNGB3	NM_019098	exon15	c.C1750A	p.L584M	CTTTCAGAGTAAC	.	75.0	33.0	86.0	0.0	.	176	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110417293	110417293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PKHD1L1	NM_177531	exon16	c.C1603A	p.P535T	ACCAGCCCATGTG	.	134.0	37.0	203.0	0.0	.	522	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110417294	110417294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	PKHD1L1,NS,carcinoma,0,1	PKHD1L1	NM_177531	exon16	c.C1604A	p.P535Q	CCAGCCCATGTGT	.	134.0	38.0	204.0	0.0	.	522	.	.	Atlas-SNP
AARD	441376	hgsc.bcm.edu	hg19	8	117954838	117954838	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	.	NM_001025357	exon2	c.A366C	p.L122F	AACTTTACTGGAC	.	54.0	33.0	95.0	0.0	.	.	.	.	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	hg19	8	142166010	142166010	+	Silent	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DENND3	NM_014957	exon8	c.G897T	p.T299T	GTCCACGGACGAT	.	60.0	32.0	65.0	0.0	.	127	.	.	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	hg19	9	104449360	104449360	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	GRIN3A	NM_133445	exon2	c.G822A	p.W274X	GATGTTCCAGTCT	.	149.0	7.0	135.0	0.0	.	186	.	.	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767953	105767953	+	Missense_Mutation	SNP	G	G	A	rs373184793		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CYLC2	NM_001340	exon5	c.G1040A	p.G347D	AGAAGGGCAAGTA	.	220.0	96.0	251.0	0.0	.	109	.	.	Atlas-SNP
GATA3	2625	hgsc.bcm.edu	hg19	10	8106075	8106075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	GATA3	NM_001002295	exon4	c.C898A	p.P300T	AACCGGCCCCTCA	.	103.0	43.0	139.0	0.0	.	182	.	.	Atlas-SNP
CHST3	9469	hgsc.bcm.edu	hg19	10	73767585	73767585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CHST3	NM_004273	exon3	c.C796G	p.R266G	TGCCGCCGCAAGG	.	43.0	28.0	38.0	0.0	.	36	.	.	Atlas-SNP
OPN4	94233	hgsc.bcm.edu	hg19	10	88417835	88417835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	OPN4	NM_001030015	exon4	c.G370A	p.A124T	AACCTCGCGGTCA	.	70.0	33.0	63.0	0.0	.	61	.	.	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	hg19	10	102770299	102770299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PDZD7	NM_001195263	exon15	c.C2347T	p.R783C	TGCTGCGGCTGCG	.	339.0	84.0	287.0	0.0	.	101	.	.	Atlas-SNP
JAKMIP3	282973	hgsc.bcm.edu	hg19	10	133930963	133930963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	JAKMIP3	NM_001105521	exon2	c.C518T	p.T173M	CGCTGACGCTGGT	.	101.0	53.0	88.0	0.0	.	69	.	.	Atlas-SNP
INSC	387755	hgsc.bcm.edu	hg19	11	15243031	15243031	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	INSC	NM_001031853	exon8	c.C969T	p.G323G	GGATGGCGTTCTG	.	165.0	65.0	135.0	0.0	.	104	.	.	Atlas-SNP
MS4A15	219995	hgsc.bcm.edu	hg19	11	60541328	60541328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	MS4A15	NM_001098835	exon6	c.C517A	p.L173M	GGCTATCTGGCCG	.	69.0	30.0	45.0	0.0	.	37	.	.	Atlas-SNP
CD6	923	hgsc.bcm.edu	hg19	11	60785356	60785356	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CD6	NM_006725	exon11	c.G1708T	p.E570X	TCAGGGGAGGATT	.	112.0	57.0	113.0	0.0	.	122	.	.	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93839186	93839186	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	HEPHL1	NM_001098672	exon17	c.C2935G	p.H979D	AATCTCCATGGCC	.	152.0	57.0	135.0	0.0	.	144	.	.	Atlas-SNP
OR8B8	26493	hgsc.bcm.edu	hg19	11	124310418	124310418	+	Silent	SNP	A	A	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	OR8B8	NM_012378	exon1	c.T564C	p.A188A	GGTGCAAGCACAC	.	137.0	66.0	134.0	0.0	.	76	.	.	Atlas-SNP
IGSF9B	22997	hgsc.bcm.edu	hg19	11	133801020	133801020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	IGSF9B	NM_014987	exon11	c.C1378A	p.P460T	TGCTGGGCTTCCC	.	66.0	4.0	64.0	0.0	.	290	.	.	Atlas-SNP
SLCO1C1	53919	hgsc.bcm.edu	hg19	12	20903660	20903660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SLCO1C1	NM_017435	exon14	c.T1850C	p.L617P	CATGCCTCAAATG	.	144.0	72.0	149.0	0.0	.	216	.	.	Atlas-SNP
C2CD5	9847	hgsc.bcm.edu	hg19	12	22697019	22697019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	.	NM_014802	exon2	c.T66G	p.S22R	CAGGTCACTAGCA	.	76.0	34.0	65.0	0.0	.	.	.	.	Atlas-SNP
KRT6A	3853	hgsc.bcm.edu	hg19	12	52884732	52884732	+	Silent	SNP	C	C	T	rs368725695	alternate_allele	TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	KRT6A	NM_005554	exon4	c.G822A	p.V274V	AGCATCCACATCC	.	147.0	55.0	129.0	0.0	.	89	.	.	Atlas-SNP
KRT78	196374	hgsc.bcm.edu	hg19	12	53238491	53238491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	KRT78	NM_173352	exon5	c.A773C	p.Q258P	TGGGTCTGGAGCT	.	29.0	16.0	30.0	0.0	.	41	.	.	Atlas-SNP
APAF1	317	hgsc.bcm.edu	hg19	12	99121087	99121087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	APAF1	NM_181861	exon26	c.A3593G	p.Y1198C	GAGGATATATTAA	.	31.0	14.0	46.0	0.0	.	111	.	.	Atlas-SNP
HNF1A	6927	hgsc.bcm.edu	hg19	12	121437070	121437070	+	Splice_Site	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	HNF1A	NM_000545	exon8	c.1502-1G>A	.	CGGCCAGCCCTCT	.	103.0	43.0	118.0	0.0	.	302	.	.	Atlas-SNP
TRPC4	7223	hgsc.bcm.edu	hg19	13	38320590	38320590	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	TRPC4	NM_003306	exon3	c.G381A	p.V127V	AGGAGGCACCTAA	.	37.0	26.0	49.0	0.0	.	389	.	.	Atlas-SNP
TBC1D4	9882	hgsc.bcm.edu	hg19	13	76055872	76055872	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	TBC1D4	NM_014832	exon1	c.C32G	p.P11R	GGGAACGGCTCAT	.	58.0	49.0	96.0	0.0	.	142	.	.	Atlas-SNP
GPC6	10082	hgsc.bcm.edu	hg19	13	95055461	95055461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	GPC6	NM_005708	exon9	c.T1658A	p.L553Q	AGAGACTGTGCAG	.	34.0	31.0	31.0	0.0	.	102	.	.	Atlas-SNP
ARHGEF40	55701	hgsc.bcm.edu	hg19	14	21555482	21555482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ARHGEF40	NM_018071	exon21	c.C4247T	p.A1416V	CAGCCGCCCGCAC	.	72.0	26.0	44.0	0.0	.	84	.	.	Atlas-SNP
PRMT5	10419	hgsc.bcm.edu	hg19	14	23398484	23398484	+	Silent	SNP	T	T	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PRMT5	NM_006109	exon1	c.A87T	p.T29T	CCCTAGTGTGTCA	.	45.0	19.0	36.0	0.0	.	101	.	.	Atlas-SNP
DCAF11	80344	hgsc.bcm.edu	hg19	14	24590150	24590150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	.	NM_025230	exon12	c.C1196A	p.A399D	GCCAGGCTGCCAC	.	164.0	88.0	113.0	0.0	.	.	.	.	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60212828	60212828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	RTN1	NM_021136	exon2	c.G613T	p.V205L	GCTTCACCTCCTC	.	92.0	13.0	106.0	0.0	.	139	.	.	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	hg19	14	71524347	71524347	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PCNX	NM_014982	exon26	c.C4758T	p.F1586F	CTGTTTCATCCTT	.	73.0	28.0	91.0	0.0	.	198	.	.	Atlas-SNP
NEK9	91754	hgsc.bcm.edu	hg19	14	75593444	75593444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	NEK9	NM_033116	exon1	c.G181T	p.G61C	AGGCGCCGCGGCC	.	180.0	83.0	160.0	0.0	.	64	.	.	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102552710	102552710	+	Silent	SNP	A	A	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	HSP90AA1	NM_001017963	exon3	c.T372A	p.P124P	TTCCTCAGGCATC	.	95.0	32.0	124.0	0.0	.	65	.	.	Atlas-SNP
INF2	64423	hgsc.bcm.edu	hg19	14	105180840	105180840	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	INF2	NM_022489	exon21	c.T3341A	p.L1114H	AGCCCCTCAAGTT	.	75.0	32.0	50.0	0.0	.	148	.	.	Atlas-SNP
NIPA1	123606	hgsc.bcm.edu	hg19	15	23049159	23049159	+	Silent	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	NIPA1	NM_144599	exon5	c.C660T	p.N220N	GGACGGGTTGTTA	.	73.0	30.0	95.0	0.0	.	26	.	.	Atlas-SNP
AQR	9716	hgsc.bcm.edu	hg19	15	35196558	35196558	+	Silent	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	AQR	NM_014691	exon19	c.A1980G	p.K660K	CTTTGGTTTTCTC	.	96.0	41.0	65.0	0.0	.	139	.	.	Atlas-SNP
MYO1E	4643	hgsc.bcm.edu	hg19	15	59480390	59480390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	MYO1E	NM_004998	exon18	c.G1831A	p.G611S	TCAGACCCAAATA	.	46.0	25.0	46.0	0.0	.	99	.	.	Atlas-SNP
SEMA7A	8482	hgsc.bcm.edu	hg19	15	74704300	74704300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SEMA7A	NM_003612	exon11	c.G1348A	p.A450T	TGAAGGCGAAGCT	.	77.0	15.0	56.0	0.0	.	58	.	.	Atlas-SNP
ZNF774	342132	hgsc.bcm.edu	hg19	15	90903908	90903908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ZNF774	NM_001004309	exon4	c.A845G	p.Q282R	CTCACCAGAGGAC	.	61.0	19.0	84.0	0.0	.	35	.	.	Atlas-SNP
SHISA9	729993	hgsc.bcm.edu	hg19	16	12996468	12996468	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SHISA9	NM_001145204	exon1	c.A547T	p.R183W	CCCCAAAGGGAGC	.	59.0	21.0	35.0	0.0	.	33	.	.	Atlas-SNP
ABCC11	85320	hgsc.bcm.edu	hg19	16	48232119	48232119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ABCC11	NM_033151	exon15	c.G2150A	p.S717N	AACTCACTGTGAG	.	126.0	57.0	138.0	0.0	.	177	.	.	Atlas-SNP
NFAT5	10725	hgsc.bcm.edu	hg19	16	69727754	69727754	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	NFAT5_ENST00000432919,NS,carcinoma,0,2	NFAT5	NM_138713	exon13	c.C4026T	p.P1342P	ACAGCCCATGCAA	.	71.0	57.0	127.0	0.0	.	184	.	.	Atlas-SNP
ZNF232	7775	hgsc.bcm.edu	hg19	17	5013065	5013065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ZNF232	NM_014519	exon3	c.A122G	p.Q41R	GTACCCTGAAGGG	.	42.0	31.0	73.0	0.0	.	42	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578239	7578239	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	TP53_ENST00000545858,NS,carcinoma,+2,65	TP53	NM_000546	exon6	c.G610T	p.E204X	AATACTCCACACG	.	61.0	50.0	147.0	0.0	.	33396	.	.	Atlas-SNP
C17orf66	256957	hgsc.bcm.edu	hg19	17	34183788	34183788	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	C17orf66	NM_152781	exon12	c.C1174T	p.Q392X	CAGTTTGAGCCAC	.	40.0	15.0	30.0	0.0	.	57	.	.	Atlas-SNP
PIGW	284098	hgsc.bcm.edu	hg19	17	34893593	34893593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PIGW	NM_178517	exon2	c.G643A	p.G215R	GGAATCGGACGAT	.	187.0	53.0	132.0	0.0	.	50	.	.	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	hg19	17	35945538	35945538	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SYNRG	NM_001163544	exon5	c.G372A	p.Q124Q	TCGTTTCCTGAAG	.	42.0	14.0	31.0	0.0	.	101	.	.	Atlas-SNP
ATP6V0A1	535	hgsc.bcm.edu	hg19	17	40620123	40620123	+	Missense_Mutation	SNP	G	G	A	rs370052932		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ATP6V0A1	NM_001130020	exon4	c.G292A	p.E98K	GACTTAGAGGTAA	.	313.0	203.0	241.0	0.0	.	67	.	.	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	hg19	17	42937333	42937333	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	EFTUD2	NM_004247	exon18	c.G1800A	p.L600L	CTTGGGCAGCTCT	.	173.0	56.0	132.0	0.0	.	85	.	.	Atlas-SNP
PNPO	55163	hgsc.bcm.edu	hg19	17	46023698	46023698	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PNPO	NM_018129	exon6	c.A556C	p.K186Q	CTGAGAAAGAAAA	.	111.0	37.0	90.0	0.0	.	18	.	.	Atlas-SNP
HOXB5	3215	hgsc.bcm.edu	hg19	17	46670490	46670490	+	Silent	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	HOXB5	NM_002147	exon1	c.C555T	p.I185I	ATGGCTGATGTGA	.	117.0	74.0	45.0	0.0	.	20	.	.	Atlas-SNP
ITGA3	3675	hgsc.bcm.edu	hg19	17	48148229	48148229	+	Missense_Mutation	SNP	G	G	A	rs140829923		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	ITGA3,colon,carcinoma,0,1	ITGA3	NM_005501	exon5	c.G686A	p.R229H	TTCAGCGCAAGGA	.	217.0	60.0	125.0	0.0	.	128	.	G|1.000;A|0.000	Atlas-SNP
CD300LB	124599	hgsc.bcm.edu	hg19	17	72518959	72518959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CD300LB	NM_174892	exon4	c.C635T	p.S212F	CTCTGAGACCCCT	.	107.0	47.0	97.0	0.0	.	38	.	.	Atlas-SNP
SLC25A10	1468	hgsc.bcm.edu	hg19	17	79682599	79682599	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SLC25A10	NM_001270888	exon3	c.A305T	p.K102M	ACGAGAAGGTGTT	.	83.0	32.0	77.0	0.0	.	24	.	.	Atlas-SNP
DCXR	51181	hgsc.bcm.edu	hg19	17	79993869	79993869	+	Silent	SNP	A	A	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DCXR	NM_016286	exon8	c.T702G	p.T234T	CGGCAAAGTGGAA	.	64.0	34.0	59.0	0.0	.	10	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22807356	22807356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ZNF521	NM_015461	exon4	c.T526C	p.C176R	CACTGCAGTGGTA	.	123.0	57.0	128.0	0.0	.	269	.	.	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23866000	23866000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	TAF4B	NM_005640	exon7	c.C1127A	p.S376Y	GCCAGTCTGAAAA	.	79.0	33.0	91.0	0.0	.	71	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44057756	44057756	+	Silent	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	LOXHD1	NM_144612	exon40	c.G6315A	p.G2105G	GCCTGCCCCTGGC	.	52.0	23.0	72.0	0.0	.	367	.	.	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72346892	72346892	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ZNF407	NM_001146190	exon1	c.A3917T	p.K1306M	GGAATAAGGAAAT	.	100.0	4.0	85.0	0.0	.	231	.	.	Atlas-SNP
AP3D1	8943	hgsc.bcm.edu	hg19	19	2137788	2137788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	AP3D1	NM_001261826	exon3	c.G211A	p.D71N	TGATGTCGTATCC	.	136.0	37.0	86.0	0.0	.	81	.	.	Atlas-SNP
DPP9	91039	hgsc.bcm.edu	hg19	19	4704012	4704012	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DPP9	NM_139159	exon7	c.G655C	p.D219H	TGGGGTCCATCCG	.	69.0	23.0	71.0	0.0	.	59	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9064481	9064481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	MUC16	NM_024690	exon3	c.G22965T	p.Q7655H	AAATCCCTGAATT	.	112.0	33.0	97.0	0.0	.	4315	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15302777	15302777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	NOTCH3	NM_000435	exon4	c.C673T	p.L225F	CAGGAAGACAGGC	.	54.0	27.0	43.0	0.0	.	340	.	.	Atlas-SNP
DMKN	93099	hgsc.bcm.edu	hg19	19	36003635	36003635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DMKN	NM_001190347	exon2	c.C484T	p.Q162X	TGCCCTGGCCCTG	.	41.0	19.0	42.0	0.0	.	116	.	.	Atlas-SNP
RBM42	79171	hgsc.bcm.edu	hg19	19	36120568	36120568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	RBM42	NM_024321	exon2	c.A275G	p.Y92C	ACACATACCAGCA	.	51.0	25.0	61.0	0.0	.	40	.	.	Atlas-SNP
PLD3	23646	hgsc.bcm.edu	hg19	19	40882529	40882529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PLD3	NM_012268	exon11	c.A1033G	p.I345V	CCTGCCATTGACG	.	26.0	9.0	24.0	0.0	.	71	.	.	Atlas-SNP
NPAS1	4861	hgsc.bcm.edu	hg19	19	47548495	47548495	+	Missense_Mutation	SNP	C	C	A	rs147026903	alternate_allele	TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	NPAS1	NM_002517	exon11	c.C1359A	p.N453K	GGAGAACGAGGCC	.	150.0	32.0	131.0	0.0	.	32	.	C|1.000;G|0.000	Atlas-SNP
DHX34	9704	hgsc.bcm.edu	hg19	19	47865878	47865878	+	Silent	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DHX34	NM_014681	exon6	c.G1521T	p.S507S	CGAATCGGACTAT	.	110.0	53.0	108.0	0.0	.	98	.	.	Atlas-SNP
ZIM3	114026	hgsc.bcm.edu	hg19	19	57646441	57646441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ZIM3	NM_052882	exon5	c.A1264G	p.S422G	ATTCACTACATCT	.	78.0	40.0	89.0	0.0	.	107	.	.	Atlas-SNP
SEL1L2	80343	hgsc.bcm.edu	hg19	20	13894546	13894546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SEL1L2	NM_001271539	exon5	c.A431C	p.K144T	ATAGCTTTCAAGT	.	91.0	32.0	106.0	0.0	.	103	.	.	Atlas-SNP
OCSTAMP	128506	hgsc.bcm.edu	hg19	20	45170059	45170059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	OCSTAMP	NM_080721	exon3	c.G1555A	p.V519M	AGGTCACACAGGG	.	135.0	21.0	125.0	0.0	.	34	.	.	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	hg19	21	45819301	45819301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	TRPM2	NM_003307	exon14	c.T2185C	p.F729L	ATGAAGTTTGTGT	.	89.0	35.0	80.0	0.0	.	196	.	.	Atlas-SNP
THOC5	8563	hgsc.bcm.edu	hg19	22	29913322	29913322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	THOC5	NM_001002878	exon17	c.A1523G	p.Q508R	AGGTACTGGCAAT	.	102.0	49.0	125.0	0.0	.	58	.	.	Atlas-SNP
TTC38	55020	hgsc.bcm.edu	hg19	22	46685390	46685390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	TTC38	NM_017931	exon12	c.G1174T	p.D392Y	AACCCTGACCGCG	.	59.0	29.0	72.0	0.0	.	40	.	.	Atlas-SNP
DCAF8L2	347442	hgsc.bcm.edu	hg19	X	27765423	27765423	+	Silent	SNP	G	G	A	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DCAF8L2	NM_001136533	exon1	c.G411A	p.E137E	GGAGGAGGAGGAG	.	47.0	33.0	11.0	0.0	.	79	.	.	Atlas-SNP
BMP15	9210	hgsc.bcm.edu	hg19	X	50658936	50658936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	BMP15	NM_005448	exon2	c.G508T	p.D170Y	GAAGGAGATTCCT	.	254.0	118.0	298.0	0.0	.	62	.	.	Atlas-SNP
FOXR2	139628	hgsc.bcm.edu	hg19	X	55650548	55650548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	FOXR2	NM_198451	exon1	c.C404T	p.S135F	CTTCCTCCAGTGA	.	134.0	72.0	134.0	0.0	.	42	.	.	Atlas-SNP
DACH2	117154	hgsc.bcm.edu	hg19	X	86069740	86069740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DACH2	NM_053281	exon10	c.G1587T	p.L529F	AAAATTGCAGGAA	.	136.0	17.0	115.0	0.0	.	263	.	.	Atlas-SNP
DLX5	1749	hgsc.bcm.edu	hg19	7	96653687	96653687	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DLX5	NM_005221	exon1	c.250delG	p.A84fs	.	.	112.0	50.0	95.0	0.0	.	52	.	.	Atlas-INDEL
SLC9A1	6548	hgsc.bcm.edu	hg19	1	27429729	27429732	+	Frame_Shift_Del	DEL	TTCG	TTCG	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	TTCG	TTCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SLC9A1	NM_003047	exon6	c.1558_1561del	p.520_521del	.	.	61.0	20.0	74.0	0.0	.	68	.	.	Atlas-INDEL
DDX60L	91351	hgsc.bcm.edu	hg19	4	169327112	169327112	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DDX60L	NM_001012967	exon24	c.3203delA	p.Q1068fs	.	.	81.0	32.0	99.0	0.0	.	116	.	.	Atlas-INDEL
GNPNAT1	64841	hgsc.bcm.edu	hg19	14	53251349	53251349	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	GNPNAT1	NM_198066	exon2	c.21delT	p.P7fs	.	.	80.0	34.0	85.0	0.0	.	14	.	.	Atlas-INDEL
DCAF8L2	347442	hgsc.bcm.edu	hg19	X	27765410	27765410	+	Frame_Shift_Del	DEL	A	A	-	rs371896121	alternate_allele	TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DCAF8L2	NM_001136533	exon1	c.397delG	p.E133fs	.	.	52.0	10.0	60.0	0.0	.	79	.	.	Atlas-INDEL
PTCH1	5727	hgsc.bcm.edu	hg19	9	98232184	98232184	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PTCH1	NM_000264	exon13	c.1759delA	p.M587fs	.	.	79.0	32.0	90.0	0.0	.	1850	.	.	Atlas-INDEL
PHOX2B	8929	hgsc.bcm.edu	hg19	4	41748009	41748009	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PHOX2B	NM_003924	exon3	c.761delC	p.A254fs	.	.	128.0	49.0	78.0	0.0	.	53	.	.	Atlas-INDEL
DDX31	64794	hgsc.bcm.edu	hg19	9	135505734	135505734	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	DDX31	NM_022779	exon16	c.1864delA	p.I622fs	.	.	76.0	37.0	81.0	0.0	.	76	.	.	Atlas-INDEL
PUS7	54517	hgsc.bcm.edu	hg19	7	105098324	105098326	+	In_Frame_Del	DEL	AGT	AGT	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	AGT	AGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	PUS7	NM_019042	exon16	c.1898_1900del	p.633_634del	.	.	89.0	34.0	78.0	0.0	.	59	.	.	Atlas-INDEL
SCOC	60592	hgsc.bcm.edu	hg19	4	141294733	141294742	+	Frame_Shift_Del	DEL	GGCTGGGACG	GGCTGGGACG	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	GGCTGGGACG	GGCTGGGACG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	SCOC	NM_001153552	exon1	c.42_51del	p.14_17del	.	.	51.0	17.0	82.0	0.0	.	11	.	.	Atlas-INDEL
ZCCHC14	23174	hgsc.bcm.edu	hg19	16	87451264	87451264	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	ZCCHC14	NM_015144	exon8	c.775delT	p.L259fs	.	.	75.0	26.0	68.0	0.0	.	87	.	.	Atlas-INDEL
CDH15	1013	hgsc.bcm.edu	hg19	16	89260206	89260206	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WJ-A86L-01A-12D-A45V-10	TCGA-WJ-A86L-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	80e4fac9-c066-47a9-9fc0-2a42eef954cd	cebd5a99-cbde-441d-b98a-b84cf1825d65	.	CDH15	NM_004933	exon13	c.2035delA	p.S679fs	.	.	41.0	30.0	56.0	0.0	.	54	.	.	Atlas-INDEL
