Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PER3	8863	hgsc.bcm.edu	hg19	1	7887311	7887311	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PER3	NM_016831	exon17	c.C2298T	p.N766N	TCAGAACGCACAG	.	115.0	23.0	158.0	0.0	.	95	.	.	Atlas-SNP
TMEM51	55092	hgsc.bcm.edu	hg19	1	15541785	15541785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TMEM51	NM_018022	exon2	c.G202A	p.V68M	GCCTACGTGCTGG	.	50.0	6.0	64.0	0.0	.	28	.	.	Atlas-SNP
C1orf63	57035	hgsc.bcm.edu	hg19	1	25571731	25571731	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C1orf63	NM_020317	exon3	c.C582T	p.N194N	GTCAATGTTGGTT	.	55.0	7.0	67.0	0.0	.	17	.	.	Atlas-SNP
SLC9A1	6548	hgsc.bcm.edu	hg19	1	27440501	27440501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SLC9A1	NM_003047	exon2	c.C629T	p.A210V	CACACGGCGTACA	.	93.0	25.0	87.0	0.0	.	68	.	.	Atlas-SNP
BAI2	576	hgsc.bcm.edu	hg19	1	32202242	32202242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BAI2	NM_001703	exon21	c.C3062T	p.S1021F	AGGTAGGACTGCC	.	133.0	10.0	168.0	0.0	.	128	.	.	Atlas-SNP
TMEM48	55706	hgsc.bcm.edu	hg19	1	54269665	54269665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TMEM48	NM_018087	exon10	c.C1002A	p.D334E	CATCAGGTCCTGC	.	163.0	54.0	216.0	0.0	.	47	.	.	Atlas-SNP
JUN	3725	hgsc.bcm.edu	hg19	1	59247776	59247776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	JUN	NM_002228	exon1	c.A967G	p.M323V	TTAGCATGAGTTG	.	87.0	33.0	131.0	0.0	.	26	.	.	Atlas-SNP
C1orf87	127795	hgsc.bcm.edu	hg19	1	60506733	60506733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C1orf87	NM_152377	exon4	c.G413T	p.G138V	GGAATGCCATGCA	.	177.0	79.0	205.0	0.0	.	55	.	.	Atlas-SNP
IL12RB2	3595	hgsc.bcm.edu	hg19	1	67852322	67852322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IL12RB2	NM_001559	exon14	c.G1916A	p.G639D	TGGTGGGCATTTT	.	123.0	54.0	172.0	0.0	.	94	.	.	Atlas-SNP
HS2ST1	9653	hgsc.bcm.edu	hg19	1	87563588	87563588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	HS2ST1_ENST00000370548,NS,malignant_melanoma,+1,1	HS2ST1	NM_012262	exon5	c.C656A	p.P219Q	AAATCCCGTTCTT	.	166.0	33.0	103.0	0.0	.	43	.	.	Atlas-SNP
GBP7	388646	hgsc.bcm.edu	hg19	1	89615112	89615112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GBP7	NM_207398	exon7	c.G1015A	p.A339T	GCTGGGCCATCTG	.	151.0	11.0	113.0	0.0	.	57	.	.	Atlas-SNP
BARHL2	343472	hgsc.bcm.edu	hg19	1	91182580	91182580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BARHL2	NM_020063	exon1	c.T173C	p.V58A	GTCCCTACGGTAT	.	253.0	23.0	137.0	0.0	.	62	.	.	Atlas-SNP
CDC7	8317	hgsc.bcm.edu	hg19	1	91985737	91985737	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CDC7	NM_001134419	exon11	c.C1231T	p.R411X	AGTGGACGATATC	.	167.0	33.0	104.0	0.0	.	74	.	.	Atlas-SNP
CHI3L2	1117	hgsc.bcm.edu	hg19	1	111773538	111773538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CHI3L2	NM_004000	exon3	c.A245G	p.Y82C	TGCTCTACCAGAC	.	100.0	18.0	100.0	0.0	.	38	.	.	Atlas-SNP
HSD3B1	3283	hgsc.bcm.edu	hg19	1	120057162	120057162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	HSD3B1,caecum,carcinoma,0,1	HSD3B1	NM_000862	exon4	c.C1016T	p.A339V	ATCTGGCGTATAA	.	194.0	100.0	260.0	0.0	.	53	.	.	Atlas-SNP
HMGCS2	3158	hgsc.bcm.edu	hg19	1	120298061	120298061	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HMGCS2	NM_005518	exon6	c.G1176A	p.S392S	CAGAAGCGAGGCC	.	126.0	22.0	132.0	0.0	.	58	.	.	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144882534	144882534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PDE4DIP	NM_014644	exon24	c.A3485G	p.H1162R	TCTTGGTGTTGGT	.	199.0	17.0	165.0	0.0	.	817	.	.	Atlas-SNP
PLEKHO1	51177	hgsc.bcm.edu	hg19	1	150131092	150131092	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PLEKHO1	NM_016274	exon6	c.T604G	p.S202A	CCAACCTCTTGTG	.	157.0	28.0	122.0	0.0	.	37	.	.	Atlas-SNP
CA14	23632	hgsc.bcm.edu	hg19	1	150234003	150234003	+	Silent	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CA14	NM_012113	exon3	c.C222A	p.T74T	TGGCACCGAGCCT	.	102.0	6.0	76.0	0.0	.	37	.	.	Atlas-SNP
RPRD2	23248	hgsc.bcm.edu	hg19	1	150444476	150444476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RPRD2	NM_015203	exon11	c.C3052T	p.R1018C	GCCTCACGTAAGC	.	286.0	33.0	204.0	0.0	.	189	.	.	Atlas-SNP
KPRP	448834	hgsc.bcm.edu	hg19	1	152732288	152732288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KPRP	NM_001025231	exon2	c.A224G	p.Q75R	AGTGCCAGTCTAA	.	229.0	44.0	150.0	0.0	.	152	.	.	Atlas-SNP
IVL	3713	hgsc.bcm.edu	hg19	1	152882316	152882316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IVL	NM_005547	exon2	c.C43A	p.L15I	CCTGCCCTCAGTC	.	131.0	27.0	77.0	0.0	.	100	.	.	Atlas-SNP
INTS3	65123	hgsc.bcm.edu	hg19	1	153744418	153744418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	INTS3	NM_023015	exon26	c.G2699A	p.S900N	ACAACAGCCTGCC	.	109.0	11.0	75.0	0.0	.	83	.	.	Atlas-SNP
SHC1	6464	hgsc.bcm.edu	hg19	1	154942720	154942720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	SHC1_ENST00000448116,NS,carcinoma,0,1	SHC1	NM_183001	exon1	c.G283A	p.V95I	CCCCTACGATCCC	.	294.0	33.0	209.0	0.0	.	91	.	.	Atlas-SNP
ARHGEF2	9181	hgsc.bcm.edu	hg19	1	155922509	155922509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	ARHGEF2,NS,carcinoma,0,1	ARHGEF2	NM_001162383	exon15	c.G1894A	p.A632T	GCAGGGCCATCCC	.	226.0	43.0	184.0	0.0	.	81	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156640020	156640020	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NES	NM_006617	exon4	c.G3960A	p.R1320R	GGGTGGCCTCTGC	.	97.0	6.0	46.0	0.0	.	196	.	.	Atlas-SNP
IGSF9	57549	hgsc.bcm.edu	hg19	1	159901663	159901663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IGSF9	NM_001135050	exon11	c.G1301A	p.R434Q	AGCTCCCGCCCTA	.	68.0	17.0	54.0	0.0	.	123	.	.	Atlas-SNP
IGSF8	93185	hgsc.bcm.edu	hg19	1	160062224	160062224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IGSF8	NM_052868	exon5	c.G1574A	p.R525Q	TGGCTTCGGGGCC	.	147.0	42.0	103.0	0.0	.	59	.	.	Atlas-SNP
FCER1G	2207	hgsc.bcm.edu	hg19	1	161188700	161188700	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FCER1G	NM_004106	exon5	c.C228T	p.Y76Y	GACTTACGAGACT	.	157.0	21.0	113.0	0.0	.	11	.	.	Atlas-SNP
ILDR2	387597	hgsc.bcm.edu	hg19	1	166890453	166890453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ILDR2	NM_199351	exon9	c.C1375T	p.R459C	CCGAGCGCTCGAA	.	76.0	28.0	37.0	0.0	.	79	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176926868	176926868	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ASTN1	NM_004319	exon11	c.C1833T	p.C611C	CTTACTGCAGCCC	.	262.0	32.0	186.0	0.0	.	314	.	.	Atlas-SNP
SEC16B	89866	hgsc.bcm.edu	hg19	1	177902746	177902746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SEC16B	NM_033127	exon21	c.G2597A	p.S866N	GAAATACTTCGTG	.	90.0	15.0	83.0	0.0	.	92	.	.	Atlas-SNP
TOR3A	64222	hgsc.bcm.edu	hg19	1	179054904	179054904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TOR3A	NM_022371	exon3	c.G515A	p.G172D	GCACAGGCAAGAA	.	93.0	32.0	89.0	0.0	.	28	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179609580	179609580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TDRD5	NM_173533	exon11	c.G1800T	p.E600D	AGTAGAGGTATGT	.	126.0	15.0	79.0	0.0	.	149	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186076037	186076037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	HMCN1,colon,carcinoma,-2,1	HMCN1	NM_031935	exon70	c.A10792G	p.T3598A	AGATATACATGTC	.	123.0	19.0	87.0	0.0	.	797	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186135392	186135392	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HMCN1	NM_031935	exon99	c.C15396A	p.C5132X	CTCCTGCCCTAAA	.	100.0	7.0	82.0	0.0	.	797	.	.	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	hg19	1	196274397	196274397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KCNT2	NM_198503	exon22	c.C2562A	p.D854E	GTAACAGTCTTTG	.	137.0	8.0	85.0	0.0	.	243	.	.	Atlas-SNP
DENND1B	163486	hgsc.bcm.edu	hg19	1	197704811	197704811	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DENND1B	NM_001195216	exon3	c.C198T	p.S66S	TACCCCGGACACG	.	85.0	17.0	66.0	0.0	.	108	.	.	Atlas-SNP
CD55	1604	hgsc.bcm.edu	hg19	1	207495135	207495135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CD55	NM_001114752	exon1	c.C25T	p.P9S	AGCGTGCCCGCGG	.	86.0	14.0	41.0	0.0	.	55	.	.	Atlas-SNP
GPATCH2	55105	hgsc.bcm.edu	hg19	1	217784290	217784290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GPATCH2	NM_018040	exon4	c.C959A	p.P320H	AAGACAGGATCTG	.	140.0	17.0	112.0	0.0	.	53	.	.	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	hg19	1	220330778	220330778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	RAB3GAP2,NS,carcinoma,+1,1	RAB3GAP2	NM_012414	exon31	c.C3389T	p.A1130V	AGCCACGCATCCT	.	189.0	28.0	144.0	0.0	.	120	.	.	Atlas-SNP
HHIPL2	79802	hgsc.bcm.edu	hg19	1	222721145	222721145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HHIPL2	NM_024746	exon1	c.G242A	p.R81Q	CAGTACCGGGCAG	.	180.0	16.0	137.0	0.0	.	122	.	.	Atlas-SNP
PARP1	142	hgsc.bcm.edu	hg19	1	226570848	226570848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PARP1	NM_001618	exon8	c.G1048A	p.V350I	TTTTAACCTTCAA	.	140.0	18.0	105.0	0.0	.	100	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228547615	228547615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OBSCN	NM_052843	exon81	c.C19022T	p.P6341L	TGGGCCCGCAGGG	.	441.0	52.0	313.0	0.0	.	2142	.	.	Atlas-SNP
ABCB10	23456	hgsc.bcm.edu	hg19	1	229666151	229666151	+	Silent	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ABCB10	NM_012089	exon8	c.G1440T	p.G480G	GATGACCCCCTCT	.	82.0	14.0	73.0	0.0	.	71	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240492397	240492397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FMN2	NM_020066	exon9	c.G4237A	p.E1413K	GAACTCGAAAAAA	.	341.0	34.0	237.0	0.0	.	451	.	.	Atlas-SNP
OR1C1	26188	hgsc.bcm.edu	hg19	1	247921056	247921056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR1C1	NM_012353	exon1	c.A653G	p.Y218C	AGTCCATAAGATA	.	160.0	40.0	128.0	0.0	.	86	.	.	Atlas-SNP
OR2T4	127074	hgsc.bcm.edu	hg19	1	248525091	248525091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR2T4	NM_001004696	exon1	c.C209T	p.A70V	TGATGGCGTTGTC	.	643.0	74.0	459.0	0.0	.	126	.	.	Atlas-SNP
TRAPPC12	51112	hgsc.bcm.edu	hg19	2	3392013	3392013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_016030	exon2	c.A619G	p.S207G	AGCCTCAGCACGT	.	87.0	5.0	102.0	0.0	.	.	.	.	Atlas-SNP
CAD	790	hgsc.bcm.edu	hg19	2	27454347	27454347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CAD	NM_004341	exon16	c.G2299A	p.G767S	GTCATGGGCATTG	.	63.0	23.0	55.0	0.0	.	199	.	.	Atlas-SNP
CEBPZ	10153	hgsc.bcm.edu	hg19	2	37449694	37449694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CEBPZ	NM_005760	exon4	c.G1894A	p.E632K	TTTCTTCATCATC	.	54.0	8.0	54.0	0.0	.	68	.	.	Atlas-SNP
SRBD1	55133	hgsc.bcm.edu	hg19	2	45829136	45829136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SRBD1	NM_018079	exon3	c.C167A	p.P56H	TCCTTGGGAGGGG	.	112.0	21.0	95.0	0.0	.	107	.	.	Atlas-SNP
CNRIP1	25927	hgsc.bcm.edu	hg19	2	68521038	68521038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CNRIP1	NM_015463	exon3	c.G451A	p.E151K	GTGTCTCGTTGGG	.	108.0	14.0	110.0	0.0	.	45	.	.	Atlas-SNP
ASPRV1	151516	hgsc.bcm.edu	hg19	2	70188363	70188363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ASPRV1	NM_152792	exon1	c.T458C	p.L153P	GGACTGAGCCTAT	.	69.0	11.0	67.0	0.0	.	41	.	.	Atlas-SNP
SEMA4F	10505	hgsc.bcm.edu	hg19	2	74902504	74902504	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SEMA4F	NM_004263	exon10	c.G1365A	p.L455L	CTACCTGGGGACA	.	88.0	14.0	93.0	0.0	.	89	.	.	Atlas-SNP
ADRA2B	151	hgsc.bcm.edu	hg19	2	96781723	96781723	+	Missense_Mutation	SNP	C	C	T	rs370956755		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ADRA2B	NM_000682	exon1	c.G166A	p.A56T	CGGCGGCGGCCAG	.	213.0	33.0	236.0	0.0	.	115	.	.	Atlas-SNP
AFF3	3899	hgsc.bcm.edu	hg19	2	100289003	100289003	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	AFF3	NM_001025108	exon11	c.A1215T	p.E405D	TACCTGTTCATTC	.	69.0	8.0	100.0	0.0	.	164	.	.	Atlas-SNP
TGFBRAP1	9392	hgsc.bcm.edu	hg19	2	105924248	105924248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TGFBRAP1	NM_004257	exon2	c.C511G	p.L171V	CAGCGAGGGGCTG	.	89.0	24.0	85.0	0.0	.	70	.	.	Atlas-SNP
SULT1C3	442038	hgsc.bcm.edu	hg19	2	108881280	108881280	+	Splice_Site	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SULT1C3	NM_001008743	exon6	c.622-1G>T	.	CATACAGGACCCA	.	150.0	13.0	159.0	0.0	.	53	.	.	Atlas-SNP
SH3RF3	344558	hgsc.bcm.edu	hg19	2	110049067	110049067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SH3RF3	NM_001099289	exon6	c.C1514T	p.A505V	AGGGGGCGTCTCT	.	84.0	8.0	126.0	0.0	.	62	.	.	Atlas-SNP
SLC20A1	6574	hgsc.bcm.edu	hg19	2	113418726	113418726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SLC20A1	NM_005415	exon10	c.A1801G	p.S601G	GGCTTCAGTATTG	.	77.0	9.0	73.0	0.0	.	59	.	.	Atlas-SNP
SCTR	6344	hgsc.bcm.edu	hg19	2	120199162	120199162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SCTR	NM_002980	exon12	c.C1154T	p.A385V	AGGACGGCCACCA	.	81.0	28.0	87.0	0.0	.	45	.	.	Atlas-SNP
TMEM163	81615	hgsc.bcm.edu	hg19	2	135470783	135470783	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	TMEM163,caecum,adenoma,0,1	TMEM163	NM_030923	exon2	c.G309A	p.A103A	AGCCACCGCGAGG	.	93.0	15.0	100.0	0.0	.	34	.	.	Atlas-SNP
ZRANB3	84083	hgsc.bcm.edu	hg19	2	135985392	135985392	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZRANB3	NM_032143	exon14	c.G2148C	p.Q716H	ACCTGGCTGGGAT	.	88.0	13.0	95.0	0.0	.	109	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141299487	141299487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LRP1B	NM_018557	exon44	c.T7248A	p.N2416K	TATATAATTGTCA	.	117.0	22.0	140.0	0.0	.	1315	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141709436	141709436	+	Silent	SNP	G	G	A	rs146639012		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LRP1B	NM_018557	exon19	c.C2961T	p.C987C	AGAGTCGCAGTGC	.	86.0	11.0	107.0	0.0	.	1315	.	G|1.000;A|0.000	Atlas-SNP
SCN3A	6328	hgsc.bcm.edu	hg19	2	166032889	166032889	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SCN3A	NM_001081676	exon3	c.T16C	p.L6L	GTACCAACAGTGC	.	65.0	30.0	61.0	0.0	.	544	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170033019	170033019	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	LRP2,NS,carcinoma,0,1	LRP2	NM_004525	exon54	c.C10473T	p.C3491C	ACACTCGCAAGTG	.	107.0	5.0	97.0	0.0	.	751	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179588283	179588283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TTN	NM_001267550	exon74	c.C21544T	p.R7182W	TGCACCGGTCTCC	.	132.0	23.0	107.0	0.0	.	18412	.	.	Atlas-SNP
ALS2	57679	hgsc.bcm.edu	hg19	2	202622187	202622187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ALS2	NM_020919	exon5	c.T1409C	p.I470T	TCTCTGATATCCA	.	123.0	15.0	122.0	0.0	.	172	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220313610	220313610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SPEG	NM_005876	exon4	c.C1730T	p.A577V	GGCCGGCGGGCAG	.	29.0	9.0	39.0	0.0	.	272	.	.	Atlas-SNP
SP110	3431	hgsc.bcm.edu	hg19	2	231033882	231033882	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SP110	NM_080424	exon19	c.T2100C	p.G700G	ATGAAAACCGAGC	.	68.0	11.0	66.0	0.0	.	105	.	.	Atlas-SNP
ESPNL	339768	hgsc.bcm.edu	hg19	2	239039675	239039675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ESPNL	NM_194312	exon9	c.C2320T	p.R774W	GGGTTGCGGGGCC	.	76.0	17.0	67.0	0.0	.	63	.	.	Atlas-SNP
HDAC4	9759	hgsc.bcm.edu	hg19	2	240056341	240056341	+	Splice_Site	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HDAC4	NM_006037	exon11	c.979-2A>G	.	CTCGTCTGGGGAC	.	79.0	11.0	73.0	0.0	.	127	.	.	Atlas-SNP
OR6B2	389090	hgsc.bcm.edu	hg19	2	240969782	240969782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR6B2	NM_001005853	exon1	c.G65A	p.G22E	TGCAGCCCTGGGG	.	156.0	47.0	191.0	0.0	.	30	.	.	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	hg19	3	10312434	10312434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TATDN2	NM_014760	exon4	c.G1568A	p.S523N	TTTACAGCAGCTC	.	122.0	30.0	100.0	0.0	.	59	.	.	Atlas-SNP
METTL6	131965	hgsc.bcm.edu	hg19	3	15455608	15455608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	METTL6	NM_152396	exon5	c.T593G	p.L198R	AACCTAAGCATGG	.	140.0	23.0	109.0	0.0	.	27	.	.	Atlas-SNP
CDHR4	389118	hgsc.bcm.edu	hg19	3	49833197	49833197	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CDHR4	NM_001007540	exon7	c.C711T	p.L237L	CTGCTCGCTGGAC	.	113.0	56.0	114.0	0.0	.	37	.	.	Atlas-SNP
IFRD2	7866	hgsc.bcm.edu	hg19	3	50326695	50326695	+	Silent	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IFRD2	NM_006764	exon8	c.G1068T	p.R356R	AAGGTCCCGGGCA	.	180.0	99.0	217.0	1.0	.	34	.	.	Atlas-SNP
ARL6	84100	hgsc.bcm.edu	hg19	3	97487017	97487017	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ARL6	NM_177976	exon3	c.C66T	p.C22C	TTTGTGCCTTGGG	.	115.0	44.0	140.0	0.0	.	19	.	.	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	hg19	3	97869067	97869067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR5H14	NM_001005514	exon1	c.G838T	p.V280F	TACACTGTCATAG	.	156.0	17.0	130.0	0.0	.	56	.	.	Atlas-SNP
ZXDC	79364	hgsc.bcm.edu	hg19	3	126180881	126180881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZXDC	NM_025112	exon6	c.G1624A	p.V542I	AAGTGACGTCAAT	.	122.0	7.0	98.0	0.0	.	87	.	.	Atlas-SNP
CHST13	166012	hgsc.bcm.edu	hg19	3	126261099	126261099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CHST13	NM_152889	exon3	c.C704T	p.P235L	TGGACCCGCGCAC	.	24.0	5.0	29.0	0.0	.	21	.	.	Atlas-SNP
ABTB1	80325	hgsc.bcm.edu	hg19	3	127395229	127395229	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ABTB1	NM_172027	exon5	c.C435G	p.D145E	GCTGGACACCAAA	.	117.0	35.0	116.0	0.0	.	36	.	.	Atlas-SNP
PAQR9	344838	hgsc.bcm.edu	hg19	3	142681759	142681759	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PAQR9	NM_198504	exon1	c.C420T	p.H140H	GAACACGTGCGCC	.	96.0	19.0	89.0	0.0	.	57	.	.	Atlas-SNP
CP	1356	hgsc.bcm.edu	hg19	3	148925301	148925301	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CP	NM_000096	exon5	c.C885T	p.H295H	AGCTGCGTGCACA	.	166.0	25.0	139.0	0.0	.	112	.	.	Atlas-SNP
MBNL1	4154	hgsc.bcm.edu	hg19	3	152164531	152164531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MBNL1	NM_207293	exon5	c.G846T	p.E282D	CCTCGAGGCAACC	.	81.0	19.0	81.0	0.0	.	100	.	.	Atlas-SNP
PLCH1	23007	hgsc.bcm.edu	hg19	3	155198960	155198960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PLCH1	NM_001130960	exon23	c.A4879G	p.N1627D	GGCGATTCACTGC	.	113.0	21.0	133.0	0.0	.	406	.	.	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	hg19	3	167000188	167000188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZBBX	NM_001199201	exon20	c.A2092G	p.R698G	CACTTCTTGATCG	.	294.0	42.0	286.0	0.0	.	299	.	.	Atlas-SNP
ACTL6A	86	hgsc.bcm.edu	hg19	3	179294051	179294051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ACTL6A	NM_004301	exon6	c.A523G	p.T175A	GGAGCCACTCATA	.	100.0	22.0	92.0	0.0	.	43	.	.	Atlas-SNP
NDUFB5	4711	hgsc.bcm.edu	hg19	3	179336273	179336273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NDUFB5	NM_002492	exon5	c.C413T	p.A138V	CAATGGCCGTCCT	.	130.0	20.0	117.0	0.0	.	22	.	.	Atlas-SNP
CHRD	8646	hgsc.bcm.edu	hg19	3	184105204	184105204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	CHRD,NS,carcinoma,0,1	CHRD	NM_003741	exon19	c.C2390T	p.T797M	CGGGTACGCGGTG	.	61.0	18.0	76.0	0.0	.	149	.	.	Atlas-SNP
ETV5	2119	hgsc.bcm.edu	hg19	3	185797806	185797806	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ETV5	NM_004454	exon7	c.T450C	p.F150F	TGGGGGAAATAGG	.	76.0	9.0	61.0	0.0	.	106	.	.	Atlas-SNP
GMNC	647309	hgsc.bcm.edu	hg19	3	190575656	190575656	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GMNC	NM_001146686	exon4	c.A300G	p.E100E	GGCGAGTTCTTCT	.	136.0	18.0	121.0	0.0	.	12	.	.	Atlas-SNP
SLC26A1	10861	hgsc.bcm.edu	hg19	4	985227	985227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SLC26A1	NM_022042	exon2	c.G265A	p.A89T	AGTAGGCGATGGC	.	203.0	21.0	164.0	0.0	.	44	.	.	Atlas-SNP
ADD1	118	hgsc.bcm.edu	hg19	4	2910332	2910332	+	Splice_Site	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ADD1	NM_176801	exon12	c.1698+1G>A	.	GTCCAGGTGAGAG	.	101.0	26.0	103.0	0.0	.	56	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3162106	3162106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HTT	NM_002111	exon29	c.A3851G	p.Q1284R	CACTGCAGGACAT	.	110.0	26.0	104.0	0.0	.	221	.	.	Atlas-SNP
HGFAC	3083	hgsc.bcm.edu	hg19	4	3444865	3444865	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HGFAC	NM_001528	exon3	c.C387T	p.H129H	TGCACACAGGAAG	.	110.0	27.0	80.0	0.0	.	69	.	.	Atlas-SNP
KIAA0232	9778	hgsc.bcm.edu	hg19	4	6865898	6865898	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KIAA0232	NM_014743	exon7	c.A3789G	p.G1263G	TTCGGGACAGCTG	.	126.0	14.0	124.0	0.0	.	102	.	.	Atlas-SNP
LCORL	254251	hgsc.bcm.edu	hg19	4	17910804	17910804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LCORL	NM_001166139	exon5	c.A595G	p.N199D	CTTGATTCATTTG	.	181.0	47.0	159.0	0.0	.	60	.	.	Atlas-SNP
DHX15	1665	hgsc.bcm.edu	hg19	4	24578249	24578249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DHX15	NM_001358	exon2	c.C124T	p.R42X	GTTCTCGGTCTCG	.	102.0	29.0	92.0	0.0	.	69	.	.	Atlas-SNP
TLR6	10333	hgsc.bcm.edu	hg19	4	38829083	38829083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TLR6	NM_006068	exon2	c.T2012C	p.I671T	AGACAAATCTGTA	.	116.0	16.0	107.0	0.0	.	67	.	.	Atlas-SNP
PPAT	5471	hgsc.bcm.edu	hg19	4	57269502	57269502	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PPAT	NM_002703	exon4	c.G468A	p.A156A	GGTATACGCCAGT	.	59.0	11.0	80.0	0.0	.	41	.	.	Atlas-SNP
GRSF1	2926	hgsc.bcm.edu	hg19	4	71702012	71702012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GRSF1	NM_002092	exon2	c.T377C	p.L126P	TCTTCCAGGTAAG	.	193.0	41.0	263.0	0.0	.	35	.	.	Atlas-SNP
SPRY1	10252	hgsc.bcm.edu	hg19	4	124323492	124323492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SPRY1	NM_001258039	exon2	c.C746T	p.S249L	CCTGTTCACAATC	.	53.0	14.0	70.0	0.0	.	28	.	.	Atlas-SNP
ABCE1	6059	hgsc.bcm.edu	hg19	4	146030397	146030397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ABCE1	NM_002940	exon5	c.A401G	p.Y134C	GAAAGTACGATGT	.	45.0	24.0	50.0	0.0	.	47	.	.	Atlas-SNP
NR2F1	7025	hgsc.bcm.edu	hg19	5	92923806	92923806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NR2F1	NM_005654	exon2	c.T647C	p.I216T	TGGGCATCGAGAA	.	118.0	17.0	133.0	0.0	.	56	.	.	Atlas-SNP
WDR36	134430	hgsc.bcm.edu	hg19	5	110456746	110456746	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	WDR36	NM_139281	exon19	c.T2223C	p.Y741Y	AGAATATGATTCG	.	207.0	47.0	206.0	0.0	.	111	.	.	Atlas-SNP
FTMT	94033	hgsc.bcm.edu	hg19	5	121187928	121187928	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	FTMT,NS,carcinoma,0,2	FTMT	NM_177478	exon1	c.G270A	p.A90A	CTATGCGTCCTAC	.	150.0	43.0	113.0	1.0	.	71	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	129039961	129039961	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ADAMTS19	NM_133638	exon21	c.T3171C	p.R1057R	CATACGTCATCGG	.	149.0	16.0	141.0	0.0	.	216	.	.	Atlas-SNP
VDAC1	7416	hgsc.bcm.edu	hg19	5	133311575	133311575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	VDAC1	NM_003374	exon7	c.A689G	p.D230G	CAGGCGTCAGGGT	.	158.0	21.0	141.0	0.0	.	17	.	.	Atlas-SNP
WDR55	54853	hgsc.bcm.edu	hg19	5	140049100	140049100	+	Missense_Mutation	SNP	G	G	A	rs367668945		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	WDR55,NS,carcinoma,0,2	WDR55	NM_017706	exon7	c.G1013A	p.R338H	GTCGGCGCAAAAA	.	322.0	36.0	255.0	0.0	.	27	.	.	Atlas-SNP
PCDHB15	56121	hgsc.bcm.edu	hg19	5	140625888	140625888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PCDHB15	NM_018935	exon1	c.G742A	p.E248K	CTCTACGAGGTGC	.	125.0	38.0	107.0	0.0	.	138	.	.	Atlas-SNP
CSNK1A1	1452	hgsc.bcm.edu	hg19	5	148929723	148929723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CSNK1A1	NM_001025105	exon2	c.T145C	p.S49P	TCTGAGATTCTAG	.	79.0	11.0	65.0	0.0	.	63	.	.	Atlas-SNP
PPARGC1B	133522	hgsc.bcm.edu	hg19	5	149219652	149219652	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PPARGC1B	NM_133263	exon9	c.C2667T	p.H889H	CCGGCACGCCAGG	.	89.0	23.0	68.0	0.0	.	74	.	.	Atlas-SNP
PDE6A	5145	hgsc.bcm.edu	hg19	5	149262997	149262997	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PDE6A	NM_000440	exon17	c.C2130T	p.I710I	CATAACGATTTCC	.	104.0	34.0	99.0	0.0	.	98	.	.	Atlas-SNP
CCNG1	900	hgsc.bcm.edu	hg19	5	162869465	162869465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CCNG1	NM_199246	exon7	c.A782C	p.N261T	AACCAAATGTTCA	.	148.0	35.0	131.0	0.0	.	28	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167626887	167626887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	ODZ2_ENST00000519204,NS,carcinoma,-1,3	.	NM_001122679	exon17	c.G3154A	p.E1052K	GAAATCGAGCTCC	.	82.0	11.0	57.0	0.0	.	.	.	.	Atlas-SNP
FGFR4	2264	hgsc.bcm.edu	hg19	5	176518089	176518089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FGFR4	NM_022963	exon4	c.G587A	p.R196H	AGAACCGCATTGG	.	83.0	21.0	85.0	0.0	.	174	.	.	Atlas-SNP
PDLIM7	9260	hgsc.bcm.edu	hg19	5	176916601	176916601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	PDLIM7,NS,haematopoietic_neoplasm,0,1	PDLIM7	NM_005451	exon9	c.G662A	p.R221H	GGCGGGCGGCTGG	.	98.0	33.0	66.0	0.0	.	32	.	.	Atlas-SNP
N4BP3	23138	hgsc.bcm.edu	hg19	5	177548875	177548875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	N4BP3	NM_015111	exon5	c.A1508G	p.Y503C	TGCGCTACCAGCG	.	80.0	8.0	67.0	0.0	.	25	.	.	Atlas-SNP
COL23A1	91522	hgsc.bcm.edu	hg19	5	177669109	177669109	+	Silent	SNP	G	G	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	COL23A1	NM_173465	exon27	c.C1515G	p.G505G	TTTCCGGCCGGGG	.	97.0	32.0	97.0	0.0	.	47	.	.	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	hg19	6	17629463	17629463	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NUP153	NM_005124	exon18	c.A2967G	p.L989L	GTTGCTTAAACCA	.	196.0	63.0	175.0	0.0	.	116	.	.	Atlas-SNP
FAM65B	9750	hgsc.bcm.edu	hg19	6	24850823	24850823	+	Splice_Site	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FAM65B	NM_014722	exon11	c.798+2T>C	.	TACTGTACCTTGA	.	66.0	8.0	59.0	0.0	.	134	.	.	Atlas-SNP
HIST1H2BF	8343	hgsc.bcm.edu	hg19	6	26199792	26199792	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HIST1H2BF	NM_003522	exon1	c.T6C	p.P2P	CATGCCTGAACCT	.	121.0	15.0	106.0	0.0	.	25	.	.	Atlas-SNP
ZSCAN16	80345	hgsc.bcm.edu	hg19	6	28097499	28097499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZSCAN16	NM_025231	exon4	c.T818C	p.F273S	AAGCCTTCATTCA	.	111.0	10.0	92.0	0.0	.	24	.	.	Atlas-SNP
UBD	10537	hgsc.bcm.edu	hg19	6	29523920	29523920	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	UBD	NM_006398	exon2	c.A235T	p.K79X	CCACTTTCAGGGT	.	218.0	52.0	193.0	0.0	.	13	.	.	Atlas-SNP
DDR1	780	hgsc.bcm.edu	hg19	6	30863232	30863232	+	Missense_Mutation	SNP	G	G	A	rs145280414		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	DDR1_ENST00000376575,caecum,carcinoma,0,4	DDR1	NM_013994	exon11	c.G1565A	p.R522H	ACGCCCGTCCCCC	.	51.0	9.0	46.0	0.0	.	213	.	G|1.000;A|0.000	Atlas-SNP
VWA7	80737	hgsc.bcm.edu	hg19	6	31741028	31741028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_025258	exon6	c.A908G	p.D303G	GAGAAATCCCTGT	.	57.0	10.0	48.0	0.0	.	.	.	.	Atlas-SNP
VARS	7407	hgsc.bcm.edu	hg19	6	31749894	31749894	+	Silent	SNP	A	A	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	VARS	NM_006295	exon18	c.T2211G	p.T737T	ACTGACAGTGACA	.	138.0	14.0	127.0	0.0	.	76	.	.	Atlas-SNP
VPS52	6293	hgsc.bcm.edu	hg19	6	33239413	33239413	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	VPS52	NM_022553	exon1	c.C40T	p.L14L	ACACCAGTTCCCG	.	149.0	17.0	139.0	0.0	.	56	.	.	Atlas-SNP
TEAD3	7005	hgsc.bcm.edu	hg19	6	35443844	35443844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TEAD3	NM_003214	exon10	c.T752A	p.I251N	TGGCCGATGTGCA	.	93.0	10.0	62.0	0.0	.	52	.	.	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	hg19	6	39867871	39867871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DAAM2	NM_001201427	exon23	c.C2698T	p.R900C	CAGAGGCGCCAGG	.	95.0	11.0	77.0	0.0	.	101	.	.	Atlas-SNP
LRFN2	57497	hgsc.bcm.edu	hg19	6	40360329	40360329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LRFN2	NM_020737	exon3	c.G1723A	p.V575M	AGTACACATTGCT	.	57.0	19.0	71.0	0.0	.	133	.	.	Atlas-SNP
GNMT	27232	hgsc.bcm.edu	hg19	6	42930828	42930828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GNMT	NM_018960	exon4	c.G470A	p.R157Q	AGCACCGGCTGGC	.	54.0	5.0	27.0	0.0	.	13	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43172484	43172484	+	Splice_Site	SNP	A	A	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CUL9	NM_015089	exon22	c.4340-2A>C	.	CTCTACAGTCAGC	.	100.0	28.0	85.0	0.0	.	248	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43192000	43192000	+	Silent	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CUL9	NM_015089	exon41	c.C7371A	p.S2457S	GGCCTCCTCAGGG	.	123.0	14.0	105.0	0.0	.	248	.	.	Atlas-SNP
GTPBP2	54676	hgsc.bcm.edu	hg19	6	43593198	43593198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GTPBP2	NM_019096	exon5	c.C607T	p.R203W	GAGCCCGGCCCCG	.	147.0	25.0	104.0	0.0	.	39	.	.	Atlas-SNP
TFAP2D	83741	hgsc.bcm.edu	hg19	6	50740417	50740417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	TFAP2D,NS,carcinoma,0,2	TFAP2D	NM_172238	exon8	c.C1199T	p.T400I	TCCAAACAGTTCT	.	126.0	24.0	129.0	1.0	.	144	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65707487	65707487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	EYS	NM_001142800	exon14	c.A2247C	p.K749N	CAGGTCTTTGCAG	.	251.0	36.0	220.0	0.0	.	527	.	.	Atlas-SNP
SMAP1	60682	hgsc.bcm.edu	hg19	6	71546688	71546688	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SMAP1	NM_001044305	exon7	c.C621T	p.S207S	TACCAGCCCTAAA	.	446.0	152.0	316.0	1.0	.	77	.	.	Atlas-SNP
SYNCRIP	10492	hgsc.bcm.edu	hg19	6	86350164	86350164	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SYNCRIP	NM_006372	exon3	c.G267A	p.Q89Q	CATTACCTGAACA	.	93.0	54.0	92.0	0.0	.	80	.	.	Atlas-SNP
MMS22L	253714	hgsc.bcm.edu	hg19	6	97681837	97681837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MMS22L	NM_198468	exon12	c.A1202G	p.Q401R	CGTAATTGTTCTT	.	202.0	83.0	208.0	0.0	.	102	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101247376	101247376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ASCC3	NM_006828	exon7	c.A1200G	p.I400M	ATAATGTATTTTT	.	48.0	24.0	39.0	0.0	.	205	.	.	Atlas-SNP
FBXO5	26271	hgsc.bcm.edu	hg19	6	153296638	153296638	+	Silent	SNP	G	G	A	rs143943044		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FBXO5	NM_012177	exon2	c.C222T	p.Y74Y	AGGGGTGTAGGAA	.	87.0	24.0	72.0	0.0	.	40	.	G|1.000;A|0.000	Atlas-SNP
ZDHHC14	79683	hgsc.bcm.edu	hg19	6	158014023	158014023	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZDHHC14	NM_024630	exon3	c.T410A	p.I137N	CAGATATCGCAAA	.	167.0	21.0	170.0	0.0	.	39	.	.	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	hg19	6	170697398	170697398	+	Silent	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FAM120B	NM_032448	exon7	c.C2307A	p.A769A	CAGAGCCGTGCAG	.	84.0	13.0	88.0	0.0	.	108	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5427704	5427704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TNRC18	NM_001080495	exon5	c.C1751T	p.A584V	TGCATGGCCGAGG	.	161.0	44.0	100.0	0.0	.	311	.	.	Atlas-SNP
OSBPL3	26031	hgsc.bcm.edu	hg19	7	24859857	24859857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OSBPL3	NM_015550	exon17	c.G1885A	p.V629I	GGCTGACCTGATG	.	524.0	159.0	417.0	1.0	.	100	.	.	Atlas-SNP
ADCYAP1R1	117	hgsc.bcm.edu	hg19	7	31123783	31123783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ADCYAP1R1	NM_001118	exon7	c.C356T	p.T119M	ACTGCACGGAGGA	.	140.0	26.0	127.0	0.0	.	78	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42017310	42017310	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GLI3	NM_000168	exon12	c.C1659T	p.C553C	CTTTGTGCAACCT	.	177.0	49.0	174.0	0.0	.	312	.	.	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	hg19	7	47925412	47925412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PKD1L1	NM_138295	exon18	c.C3077T	p.A1026V	AGGACTGCAGAGT	.	134.0	47.0	108.0	0.0	.	328	.	.	Atlas-SNP
CLDN4	1364	hgsc.bcm.edu	hg19	7	73245764	73245764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CLDN4	NM_001305	exon1	c.A233G	p.Q78R	ACCTGCAGGCGGC	.	112.0	5.0	79.0	0.0	.	10	.	.	Atlas-SNP
TRRAP	8295	hgsc.bcm.edu	hg19	7	98528292	98528292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TRRAP	NM_001244580	exon25	c.C3430T	p.R1144C	GTGGAGCGCCTGT	.	89.0	32.0	81.0	0.0	.	863	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99092121	99092121	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF394	NM_032164	exon3	c.T717C	p.H239H	GTCCTCATGGGTA	.	64.0	17.0	45.0	0.0	.	48	.	.	Atlas-SNP
PRKAR2B	5577	hgsc.bcm.edu	hg19	7	106685627	106685627	+	Missense_Mutation	SNP	A	A	C	rs368313660		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PRKAR2B	NM_002736	exon1	c.A275C	p.E92A	AGGAGGAGGCGGC	.	111.0	40.0	85.0	0.0	.	34	.	.	Atlas-SNP
HBP1	26959	hgsc.bcm.edu	hg19	7	106840668	106840668	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HBP1	NM_001244262	exon10	c.C1479T	p.Y493Y	AATGTACACATTA	.	202.0	47.0	137.0	0.0	.	31	.	.	Atlas-SNP
HYAL4	23553	hgsc.bcm.edu	hg19	7	123509038	123509038	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HYAL4	NM_012269	exon3	c.C711T	p.C237C	GTCATGCCCAGAA	.	123.0	14.0	125.0	0.0	.	65	.	.	Atlas-SNP
SLC35B4	84912	hgsc.bcm.edu	hg19	7	133979689	133979689	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SLC35B4	NM_032826	exon10	c.C892T	p.L298L	TGCCCAGCCAGTG	.	119.0	32.0	116.0	0.0	.	19	.	.	Atlas-SNP
DOK2	9046	hgsc.bcm.edu	hg19	8	21767272	21767272	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DOK2	NM_003974	exon5	c.G789A	p.S263S	GGGCAGCGACGCG	.	30.0	10.0	55.0	0.0	.	51	.	.	Atlas-SNP
HR	55806	hgsc.bcm.edu	hg19	8	21976493	21976493	+	Silent	SNP	G	G	A	rs371739727		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	HR,NS,carcinoma,0,1	HR	NM_018411	exon16	c.C3183T	p.D1061D	CTGGGCGTCCTGT	.	129.0	48.0	182.0	1.0	.	71	.	.	Atlas-SNP
PURG	29942	hgsc.bcm.edu	hg19	8	30889771	30889771	+	Silent	SNP	G	G	A	rs11574152	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PURG	NM_013357	exon1	c.C528T	p.I176I	CCTCTCGATATAG	.	58.0	16.0	70.0	0.0	.	79	.	G|0.999;T|0.001	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33357912	33357912	+	Silent	SNP	G	G	A	rs145192530		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001265581	exon7	c.C1356T	p.S452S	CAGGGCGCTCTTA	.	86.0	42.0	87.0	0.0	.	.	.	G|1.000;A|0.000	Atlas-SNP
IKBKB	3551	hgsc.bcm.edu	hg19	8	42178286	42178286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IKBKB	NM_001556	exon16	c.A1612G	p.M538V	CGGATGATGGCTC	.	101.0	12.0	83.0	0.0	.	88	.	.	Atlas-SNP
SNAI2	6591	hgsc.bcm.edu	hg19	8	49832741	49832741	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SNAI2	NM_003068	exon2	c.A339G	p.L113L	GGACTGTAGTCTT	.	190.0	43.0	160.0	0.0	.	53	.	.	Atlas-SNP
MCMDC2	157777	hgsc.bcm.edu	hg19	8	67796211	67796211	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MCMDC2	NM_173518	exon9	c.A1055T	p.D352V	CAAGTGATACTCT	.	77.0	13.0	50.0	0.0	.	84	.	.	Atlas-SNP
ARFGEF1	10565	hgsc.bcm.edu	hg19	8	68151115	68151115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ARFGEF1	NM_006421	exon21	c.C2993T	p.A998V	ACATATGCATCTC	.	124.0	14.0	69.0	0.0	.	196	.	.	Atlas-SNP
EYA1	2138	hgsc.bcm.edu	hg19	8	72267025	72267025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	EYA1,NS,carcinoma,0,1	EYA1	NM_172059	exon2	c.G116A	p.G39D	TCGGTGCCATTGG	.	117.0	17.0	103.0	0.0	.	108	.	.	Atlas-SNP
GDAP1	54332	hgsc.bcm.edu	hg19	8	75276245	75276245	+	Silent	SNP	C	C	T	rs367790253		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GDAP1	NM_018972	exon6	c.C720T	p.C240C	GCTCTGCGGTGAA	.	193.0	22.0	140.0	0.0	.	36	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77617094	77617094	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZFHX4	NM_024721	exon2	c.T771C	p.P257P	TGTCCCTAACAAT	.	117.0	41.0	101.0	0.0	.	878	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77617133	77617133	+	Silent	SNP	C	C	T	rs369214100		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZFHX4	NM_024721	exon2	c.C810T	p.S270S	TGTTAGCGATGGG	.	161.0	7.0	109.0	0.0	.	878	.	.	Atlas-SNP
PAG1	55824	hgsc.bcm.edu	hg19	8	81897456	81897456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PAG1	NM_018440	exon7	c.C431T	p.T144I	AGCATGGTATCCA	.	139.0	36.0	101.0	0.0	.	39	.	.	Atlas-SNP
ZHX2	22882	hgsc.bcm.edu	hg19	8	123965549	123965549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZHX2	NM_014943	exon3	c.A1799G	p.K600R	GCAAAAAAGGCCA	.	162.0	17.0	108.0	0.0	.	106	.	.	Atlas-SNP
BAI1	575	hgsc.bcm.edu	hg19	8	143563066	143563066	+	Silent	SNP	C	C	T	rs376677183		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BAI1	NM_001702	exon10	c.C2124T	p.D708D	TGGGGACGTACAG	.	76.0	5.0	48.0	0.0	.	146	.	.	Atlas-SNP
BAI1	575	hgsc.bcm.edu	hg19	8	143599549	143599549	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	BAI1,caecum,carcinoma,0,1	BAI1	NM_001702	exon18	c.C2868T	p.G956G	CTGTGGCGTGTCC	.	100.0	12.0	62.0	0.0	.	146	.	.	Atlas-SNP
ZNF696	79943	hgsc.bcm.edu	hg19	8	144378780	144378780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF696	NM_030895	exon3	c.G935A	p.R312H	AGCACCGCCGCAT	.	51.0	17.0	46.0	0.0	.	18	.	.	Atlas-SNP
NAPRT1	93100	hgsc.bcm.edu	hg19	8	144657636	144657636	+	Silent	SNP	C	C	T	rs143442304		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NAPRT1	NM_145201	exon10	c.G1248A	p.T416T	AGGCAACGTCTGC	.	301.0	62.0	196.0	0.0	.	47	.	C|1.000;T|0.000	Atlas-SNP
PPP1R16A	84988	hgsc.bcm.edu	hg19	8	145724317	145724317	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	PPP1R16A,colon,carcinoma,0,1	PPP1R16A	NM_032902	exon3	c.C349T	p.R117X	GATTTCCGAGAGA	.	82.0	6.0	55.0	0.0	.	25	.	.	Atlas-SNP
PPP1R16A	84988	hgsc.bcm.edu	hg19	8	145727136	145727136	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PPP1R16A	NM_032902	exon10	c.T1437C	p.P479P	GAGCCCTGAGACA	.	171.0	16.0	134.0	0.0	.	25	.	.	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	hg19	9	2718843	2718843	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KCNV2	NM_133497	exon1	c.C1104T	p.S368S	GGGCAGCGTGGGT	.	48.0	9.0	45.0	0.0	.	72	.	.	Atlas-SNP
KDM4C	23081	hgsc.bcm.edu	hg19	9	7174674	7174674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KDM4C	NM_015061	exon22	c.T3116C	p.V1039A	ACCCTGTATACCG	.	141.0	9.0	162.0	0.0	.	186	.	.	Atlas-SNP
TOPORS	10210	hgsc.bcm.edu	hg19	9	32544180	32544180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TOPORS	NM_005802	exon3	c.T343C	p.Y115H	CTAAGTAAGACAC	.	1442.0	140.0	1704.0	0.0	.	127	.	.	Atlas-SNP
RPP25L	138716	hgsc.bcm.edu	hg19	9	34611031	34611031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_148179	exon2	c.G263A	p.R88H	AGGAAACGTAGCT	.	84.0	15.0	87.0	0.0	.	.	.	.	Atlas-SNP
SHB	6461	hgsc.bcm.edu	hg19	9	37919975	37919975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SHB	NM_003028	exon6	c.A1373G	p.K458R	GCCAGTTTCATGT	.	117.0	25.0	99.0	0.0	.	31	.	.	Atlas-SNP
PRKACG	5568	hgsc.bcm.edu	hg19	9	71628335	71628335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	PRKACG,middle_lobe,carcinoma,0,1	PRKACG	NM_002732	exon1	c.T674C	p.L225P	ACCCCTAGGGCCC	.	89.0	12.0	82.0	0.0	.	65	.	.	Atlas-SNP
SECISBP2	79048	hgsc.bcm.edu	hg19	9	91940370	91940370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SECISBP2	NM_024077	exon3	c.T211G	p.F71V	ATGGCCTTTGGAG	.	91.0	5.0	82.0	0.0	.	64	.	.	Atlas-SNP
HSD17B3	3293	hgsc.bcm.edu	hg19	9	99006674	99006674	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HSD17B3	NM_000197	exon9	c.G609A	p.A203A	CACAAACGCCTGG	.	70.0	32.0	98.0	0.0	.	32	.	.	Atlas-SNP
TEX10	54881	hgsc.bcm.edu	hg19	9	103065915	103065915	+	Missense_Mutation	SNP	G	G	A	rs371930194		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TEX10	NM_017746	exon14	c.C2675T	p.T892M	CTTACCGTGATAT	.	166.0	26.0	173.0	0.0	.	99	.	.	Atlas-SNP
DEC1	50514	hgsc.bcm.edu	hg19	9	118163488	118163488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DEC1	NM_017418	exon7	c.T104C	p.L35P	ATGCCCTGCACAG	.	61.0	11.0	34.0	0.0	.	8	.	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	hg19	9	137687112	137687112	+	Missense_Mutation	SNP	C	C	T	rs375600865		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	COL5A1,NS,carcinoma,0,2	COL5A1	NM_000093	exon34	c.C2750T	p.P917L	AGGGTCCGAGGGG	.	97.0	12.0	69.0	0.0	.	323	.	.	Atlas-SNP
PPP1R26	9858	hgsc.bcm.edu	hg19	9	138376419	138376419	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_014811	exon4	c.G63A	p.P21P	TGGCCCGCCAGGG	.	77.0	13.0	62.0	0.0	.	.	.	.	Atlas-SNP
PPP1R26	9858	hgsc.bcm.edu	hg19	9	138376561	138376561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_014811	exon4	c.G205A	p.A69T	CGCGCCGCACAGA	.	54.0	10.0	25.0	0.0	.	.	.	.	Atlas-SNP
NOTCH1	4851	hgsc.bcm.edu	hg19	9	139405699	139405699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NOTCH1	NM_017617	exon16	c.C2492T	p.A831V	CACGGGGCCAGCA	.	63.0	20.0	57.0	0.0	.	1980	.	.	Atlas-SNP
FBXW5	54461	hgsc.bcm.edu	hg19	9	139835867	139835867	+	Silent	SNP	G	G	A	rs372957829		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FBXW5	NM_018998	exon8	c.C1293T	p.A431A	GGGGTCGGCCACC	.	56.0	10.0	42.0	0.0	.	36	.	.	Atlas-SNP
FUT7	2529	hgsc.bcm.edu	hg19	9	139925470	139925470	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FUT7	NM_004479	exon2	c.T721A	p.F241I	GCCAGAATTTCTC	.	152.0	13.0	138.0	0.0	.	24	.	.	Atlas-SNP
ITIH5	80760	hgsc.bcm.edu	hg19	10	7697622	7697622	+	Missense_Mutation	SNP	G	G	T	rs139355305	bycluster;byfrequency;alternate_allele	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	ITIH5_ENST00000397145,right_lower_lobe,carcinoma,0,2	ITIH5	NM_001001851	exon2	c.C107A	p.P36Q	TGCCTCGGGACCC	.	53.0	9.0	67.0	0.0	.	343	.	G|1.000;A|0.000	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17126368	17126368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CUBN	NM_001081	exon17	c.G2203A	p.V735I	TATAGACGCATTG	.	128.0	18.0	134.0	0.0	.	515	.	.	Atlas-SNP
HNRNPF	3185	hgsc.bcm.edu	hg19	10	43883054	43883054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HNRNPF	NM_001098204	exon4	c.G279A	p.M93I	CCAATCCATCTCG	.	72.0	29.0	72.0	0.0	.	57	.	.	Atlas-SNP
ARHGAP22	58504	hgsc.bcm.edu	hg19	10	49659075	49659075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ARHGAP22	NM_001256024	exon9	c.G1145T	p.C382F	ACTGCGCATTGCA	.	108.0	17.0	117.0	0.0	.	94	.	.	Atlas-SNP
OGDHL	55753	hgsc.bcm.edu	hg19	10	50947771	50947771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OGDHL	NM_018245	exon17	c.G2255A	p.G752D	GCCTGGCCGGTGC	.	65.0	13.0	69.0	0.0	.	149	.	.	Atlas-SNP
SIRT1	23411	hgsc.bcm.edu	hg19	10	69648662	69648662	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SIRT1	NM_012238	exon3	c.A570G	p.Q190Q	TCAGCAACATCTT	.	44.0	12.0	59.0	0.0	.	38	.	.	Atlas-SNP
LIPK	643414	hgsc.bcm.edu	hg19	10	90512278	90512278	+	Missense_Mutation	SNP	C	C	T	rs200951684	alternate_allele	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LIPK	NM_001080518	exon9	c.C965T	p.T322I	AGCTTACACCTCC	.	86.0	17.0	82.0	0.0	.	50	.	.	Atlas-SNP
TCTN3	26123	hgsc.bcm.edu	hg19	10	97453178	97453178	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TCTN3	NM_015631	exon2	c.C312T	p.C104C	GTCGCAGCAGCAA	.	168.0	21.0	176.0	0.0	.	66	.	.	Atlas-SNP
CNNM1	26507	hgsc.bcm.edu	hg19	10	101089165	101089165	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CNNM1	NM_020348	exon1	c.G21A	p.A7A	GGCGGCGGCAGCA	.	43.0	16.0	38.0	0.0	.	101	.	.	Atlas-SNP
FAM178A	55719	hgsc.bcm.edu	hg19	10	102684351	102684351	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FAM178A	NM_001136123	exon5	c.C1593T	p.A531A	TAAGGCCGATTCT	.	135.0	18.0	182.0	0.0	.	9	.	.	Atlas-SNP
PSD	5662	hgsc.bcm.edu	hg19	10	104171962	104171962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PSD	NM_001270965	exon8	c.G1771A	p.A591T	CCCCAGCCACCAG	.	99.0	35.0	94.0	0.0	.	164	.	.	Atlas-SNP
CYP17A1	1586	hgsc.bcm.edu	hg19	10	104595102	104595102	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CYP17A1	NM_000102	exon2	c.T345C	p.A115A	AGAGTCAGCGAAG	.	72.0	10.0	115.0	0.0	.	48	.	.	Atlas-SNP
NEURL	9148	hgsc.bcm.edu	hg19	10	105344832	105344832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NEURL	NM_004210	exon4	c.G1189A	p.D397N	AGCGGCGACATCC	.	17.0	6.0	18.0	0.0	.	38	.	.	Atlas-SNP
ACADSB	36	hgsc.bcm.edu	hg19	10	124812642	124812642	+	Silent	SNP	C	C	T	rs142095937	bycluster;byfrequency;alternate_allele	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ACADSB	NM_001609	exon10	c.C1194T	p.Y398Y	AGATTACCCTGTG	.	113.0	22.0	107.0	0.0	.	45	.	C|0.999;G|0.001	Atlas-SNP
DHX32	55760	hgsc.bcm.edu	hg19	10	127526922	127526922	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DHX32	NM_018180	exon10	c.T1916G	p.L639X	AGCATTAAGTAGT	.	47.0	21.0	65.0	0.0	.	67	.	.	Atlas-SNP
DPYSL4	10570	hgsc.bcm.edu	hg19	10	134012411	134012411	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DPYSL4	NM_006426	exon8	c.G747A	p.P249P	CTGCCCGCTGTAC	.	134.0	28.0	158.0	0.0	.	91	.	.	Atlas-SNP
FUOM	282969	hgsc.bcm.edu	hg19	10	135168879	135168879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	C10orf125_ENST00000368552,NS,carcinoma,0,1	.	NM_001098483	exon6	c.C460A	p.L154M	CCTACAGCAGGGG	.	44.0	17.0	66.0	0.0	.	.	.	.	Atlas-SNP
LRRC56	115399	hgsc.bcm.edu	hg19	11	551775	551775	+	Silent	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LRRC56	NM_198075	exon10	c.C921A	p.G307G	TGAAGGCCTGCTT	.	97.0	37.0	76.0	0.0	.	23	.	.	Atlas-SNP
SCT	6343	hgsc.bcm.edu	hg19	11	626447	626447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SCT	NM_021920	exon4	c.C350T	p.T117I	CGCAAGGTTCCTT	.	385.0	45.0	315.0	0.0	.	4	.	.	Atlas-SNP
OR51I2	390064	hgsc.bcm.edu	hg19	11	5475291	5475291	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR51I2	NM_001004754	exon1	c.T573C	p.D191D	TGCTGATATCAGT	.	71.0	10.0	64.0	0.0	.	76	.	.	Atlas-SNP
OR52E8	390079	hgsc.bcm.edu	hg19	11	5878052	5878052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR52E8	NM_001005168	exon1	c.C881A	p.P294H	ATTACAGGATTGA	.	179.0	23.0	134.0	0.0	.	54	.	.	Atlas-SNP
OR52L1	338751	hgsc.bcm.edu	hg19	11	6007754	6007754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR52L1	NM_001005173	exon1	c.T407C	p.M136T	AGAGCCATGGCCA	.	132.0	13.0	93.0	0.0	.	100	.	.	Atlas-SNP
TEAD1	7003	hgsc.bcm.edu	hg19	11	12883850	12883850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TEAD1	NM_021961	exon4	c.A256G	p.T86A	ACGAGGACCAGAA	.	139.0	35.0	119.0	0.0	.	40	.	.	Atlas-SNP
MRGPRX4	117196	hgsc.bcm.edu	hg19	11	18195145	18195145	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	MRGPRX4,NS,carcinoma,0,1	MRGPRX4	NM_054032	exon1	c.C342T	p.S114S	GCTGAGCGCCATC	.	96.0	12.0	69.0	0.0	.	68	.	.	Atlas-SNP
KCNA4	3739	hgsc.bcm.edu	hg19	11	30034166	30034166	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KCNA4	NM_002233	exon2	c.T60C	p.G20G	AGCATAACCATAA	.	41.0	6.0	39.0	0.0	.	158	.	.	Atlas-SNP
HIPK3	10114	hgsc.bcm.edu	hg19	11	33309022	33309022	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.,1	HIPK3	NM_001048200	exon2	c.T1062C	p.T354T	AAAGACTGTTTGT	.	162.0	20.0	149.0	0.0	.	92	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33566862	33566862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_012194	exon2	c.C2432T	p.T811M	TGGTCACGACTGG	.	73.0	18.0	63.0	0.0	.	.	.	.	Atlas-SNP
AMBRA1	55626	hgsc.bcm.edu	hg19	11	46456582	46456582	+	Missense_Mutation	SNP	C	C	T	rs377069728		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	AMBRA1	NM_001267782	exon15	c.G2647A	p.V883M	CATTCACGGAAGC	.	86.0	10.0	79.0	0.0	.	201	.	.	Atlas-SNP
OR4C13	283092	hgsc.bcm.edu	hg19	11	49974682	49974682	+	Silent	SNP	T	T	C	rs145221317		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR4C13	NM_001001955	exon1	c.T708C	p.S236S	CCTCTCTACCTGT	.	94.0	11.0	84.0	0.0	.	96	.	T|1.000;C|0.000	Atlas-SNP
OR8J3	81168	hgsc.bcm.edu	hg19	11	55905120	55905120	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR8J3	NM_001004064	exon1	c.T75C	p.I25I	GAGGGGAATCTGG	.	133.0	22.0	127.0	0.0	.	112	.	.	Atlas-SNP
OR5AR1	219493	hgsc.bcm.edu	hg19	11	56431409	56431409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR5AR1	NM_001004730	exon1	c.C248T	p.A83V	TGCTGGCTGACTT	.	115.0	30.0	109.0	0.0	.	68	.	.	Atlas-SNP
CTNND1	1500	hgsc.bcm.edu	hg19	11	57583392	57583392	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CTNND1	NM_001085458	exon20	c.C2814T	p.D938D	GCAGGACGAGGGG	.	134.0	26.0	108.0	0.0	.	203	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62289805	62289805	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	AHNAK	NM_001620	exon5	c.T12084C	p.G4028G	TAGATCACCTTCC	.	113.0	12.0	118.0	0.0	.	532	.	.	Atlas-SNP
MEN1	4221	hgsc.bcm.edu	hg19	11	64577275	64577275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MEN1	NM_130800	exon2	c.C307A	p.L103M	GGGACAGGTCGAC	.	134.0	24.0	119.0	0.0	.	442	.	.	Atlas-SNP
TIGD3	220359	hgsc.bcm.edu	hg19	11	65123857	65123857	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TIGD3	NM_145719	exon2	c.A578C	p.D193A	CATGTGATCAAGT	.	75.0	22.0	36.0	0.0	.	32	.	.	Atlas-SNP
FRMD8	83786	hgsc.bcm.edu	hg19	11	65156924	65156924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FRMD8	NM_031904	exon3	c.G178A	p.A60T	CACCGCGCTGTCC	.	43.0	10.0	38.0	0.0	.	28	.	.	Atlas-SNP
PCNXL3	399909	hgsc.bcm.edu	hg19	11	65396885	65396885	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PCNXL3	NM_032223	exon25	c.T3999C	p.P1333P	GAACCCTGGTGTG	.	121.0	14.0	122.0	0.0	.	140	.	.	Atlas-SNP
CCDC87	55231	hgsc.bcm.edu	hg19	11	66359567	66359567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CCDC87	NM_018219	exon1	c.G920A	p.R307Q	CCTCTCCGGAGCT	.	82.0	23.0	95.0	0.0	.	83	.	.	Atlas-SNP
LRP5	4041	hgsc.bcm.edu	hg19	11	68192642	68192642	+	Silent	SNP	C	C	T	rs141446007		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LRP5	NM_002335	exon15	c.C3309T	p.R1103R	CGAGCGCGAGGTC	.	79.0	12.0	73.0	0.0	.	136	.	C|1.000;T|0.000	Atlas-SNP
LRP5	4041	hgsc.bcm.edu	hg19	11	68201261	68201261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LRP5	NM_002335	exon18	c.G3955A	p.G1319S	TGCGACGGCGAGG	.	194.0	59.0	210.0	0.0	.	136	.	.	Atlas-SNP
KRTAP5-11	440051	hgsc.bcm.edu	hg19	11	71293746	71293746	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KRTAP5-11	NM_001005405	exon1	c.C138T	p.C46C	ACAGCAGCACACA	.	153.0	33.0	145.0	0.0	.	36	.	.	Atlas-SNP
CHRDL2	25884	hgsc.bcm.edu	hg19	11	74414512	74414512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	CHRDL2,NS,malignant_melanoma,0,1	CHRDL2	NM_015424	exon8	c.G784A	p.G262R	CCTCCCCGTGGGA	.	110.0	23.0	122.0	0.0	.	47	.	.	Atlas-SNP
KLHL35	283212	hgsc.bcm.edu	hg19	11	75140869	75140869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KLHL35	NM_001039548	exon1	c.G806A	p.R269H	AGCGGGCGGCACT	.	41.0	8.0	28.0	0.0	.	15	.	.	Atlas-SNP
MTNR1B	4544	hgsc.bcm.edu	hg19	11	92714946	92714946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	MTNR1B,colon,carcinoma,+1,2	MTNR1B	NM_005959	exon2	c.G557A	p.R186H	ACCCACGCATCTA	.	109.0	14.0	88.0	0.0	.	75	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93429506	93429506	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KIAA1731	NM_033395	exon14	c.A1692G	p.S564S	AGCATCATGCCCT	.	50.0	13.0	63.0	0.0	.	173	.	.	Atlas-SNP
TAF1D	79101	hgsc.bcm.edu	hg19	11	93471438	93471438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TAF1D	NM_024116	exon3	c.A296G	p.Y99C	GGCTGGTACCTCC	.	75.0	11.0	83.0	0.0	.	18	.	.	Atlas-SNP
CNTN5	53942	hgsc.bcm.edu	hg19	11	100221535	100221535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CNTN5	NM_001243270	exon23	c.G3133A	p.V1045I	ATTGAAGTTCGAG	.	178.0	35.0	127.0	0.0	.	324	.	.	Atlas-SNP
CARD18	59082	hgsc.bcm.edu	hg19	11	105009586	105009586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CARD18	NM_021571	exon2	c.T227A	p.L76H	TCACAGAGATGCT	.	181.0	11.0	173.0	0.0	.	18	.	.	Atlas-SNP
MSANTD4	84437	hgsc.bcm.edu	hg19	11	105880665	105880665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_032424	exon3	c.T635C	p.L212P	AACTCTAGTTTCT	.	60.0	19.0	56.0	0.0	.	.	.	.	Atlas-SNP
CWF19L2	143884	hgsc.bcm.edu	hg19	11	107299544	107299544	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CWF19L2	NM_152434	exon8	c.A1414T	p.T472S	ACTTTGTATCCCG	.	99.0	31.0	104.0	0.0	.	135	.	.	Atlas-SNP
PPP2R1B	5519	hgsc.bcm.edu	hg19	11	111613287	111613287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PPP2R1B	NM_002716	exon13	c.G1657A	p.A553T	ATTTGGCCACATT	.	61.0	7.0	46.0	0.0	.	44	.	.	Atlas-SNP
HYOU1	10525	hgsc.bcm.edu	hg19	11	118923017	118923017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HYOU1	NM_006389	exon10	c.A1112G	p.E371G	CTCATTTCGGCAC	.	70.0	23.0	52.0	0.0	.	88	.	.	Atlas-SNP
THY1	7070	hgsc.bcm.edu	hg19	11	119291593	119291593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	THY1	NM_006288	exon2	c.C23T	p.A8V	AGGAGAGCGATGC	.	102.0	27.0	88.0	0.0	.	21	.	.	Atlas-SNP
CLMP	79827	hgsc.bcm.edu	hg19	11	122968527	122968527	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CLMP	NM_024769	exon2	c.C162T	p.T54T	ATTATCGGTGAGC	.	96.0	13.0	90.0	0.0	.	39	.	.	Atlas-SNP
CDON	50937	hgsc.bcm.edu	hg19	11	125893349	125893349	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CDON	NM_016952	exon2	c.T23C	p.L8S	GTACATAAGGGTC	.	88.0	20.0	72.0	0.0	.	137	.	.	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	hg19	11	134217281	134217281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GLB1L2	NM_138342	exon5	c.T512C	p.V171A	AAGCAGTGGACCT	.	106.0	19.0	102.0	0.0	.	79	.	.	Atlas-SNP
B4GALNT3	283358	hgsc.bcm.edu	hg19	12	668587	668587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	B4GALNT3	NM_173593	exon19	c.G2888A	p.R963K	TGGACAGGTGACT	.	148.0	17.0	122.0	0.0	.	64	.	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2719737	2719737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CACNA1C	NM_199460	exon29	c.C3649T	p.R1217W	AAGGCCCGGCCCC	.	151.0	61.0	106.0	0.0	.	1023	.	.	Atlas-SNP
PHC1	1911	hgsc.bcm.edu	hg19	12	9087824	9087824	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PHC1	NM_004426	exon11	c.C2358T	p.S786S	GGACAGCCCATCT	.	46.0	8.0	53.0	0.0	.	67	.	.	Atlas-SNP
GYS2	2998	hgsc.bcm.edu	hg19	12	21693401	21693401	+	Silent	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GYS2	NM_021957	exon14	c.C1752A	p.I584I	CCTCTGGATAATC	.	119.0	22.0	128.0	0.0	.	110	.	.	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	hg19	12	21960410	21960410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	ABCC9_ENST00000261201,NS,carcinoma,0,4	ABCC9	NM_005691	exon36	c.C4319T	p.A1440V	ACAACCGCATCTA	.	101.0	47.0	77.0	0.0	.	411	.	.	Atlas-SNP
KLHL42	57542	hgsc.bcm.edu	hg19	12	27933999	27933999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_020782	exon1	c.T736C	p.Y246H	AGGGGCTATGGGT	.	93.0	17.0	90.0	0.0	.	.	.	.	Atlas-SNP
FMNL3	91010	hgsc.bcm.edu	hg19	12	50042064	50042064	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FMNL3	NM_175736	exon22	c.G2588C	p.S863T	TGGATGCTGCACT	.	87.0	12.0	70.0	0.0	.	137	.	.	Atlas-SNP
KRT79	338785	hgsc.bcm.edu	hg19	12	53227586	53227586	+	Silent	SNP	G	G	A	rs376301539		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	KRT79,bladder,carcinoma,0,1	KRT79	NM_175834	exon1	c.C459T	p.F153F	GGAGGCGAACTTG	.	91.0	22.0	95.0	0.0	.	78	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70983909	70983909	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PTPRB	NM_001109754	exon8	c.C1885T	p.L629L	AGAGTAGGATCCG	.	146.0	14.0	141.0	0.0	.	676	.	.	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	70983921	70983921	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PTPRB	NM_001109754	exon8	c.C1873T	p.Q625X	GATACTGCTCCCA	.	148.0	13.0	146.0	0.0	.	676	.	.	Atlas-SNP
CAPS2	84698	hgsc.bcm.edu	hg19	12	75678791	75678791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	CAPS2_ENST00000409445,colon,carcinoma,0,2	CAPS2	NM_032606	exon16	c.C1522T	p.R508C	TACCACGTTTGAA	.	79.0	16.0	53.0	0.0	.	96	.	.	Atlas-SNP
PLXNC1	10154	hgsc.bcm.edu	hg19	12	94543433	94543433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PLXNC1	NM_005761	exon1	c.C686T	p.A229V	AGGGCGCGGGCAG	.	109.0	16.0	86.0	0.0	.	135	.	.	Atlas-SNP
MAPKAPK5	8550	hgsc.bcm.edu	hg19	12	112327908	112327908	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MAPKAPK5	NM_139078	exon13	c.C1287T	p.C429C	GGAATGCAAACTC	.	102.0	22.0	105.0	0.0	.	56	.	.	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112613605	112613605	+	Silent	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001109662	exon66	c.C11127A	p.A3709A	TTGCCTGGCTCGG	.	115.0	5.0	135.0	0.0	.	.	.	.	Atlas-SNP
DTX1	1840	hgsc.bcm.edu	hg19	12	113534661	113534661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DTX1	NM_004416	exon9	c.G1780A	p.G594S	GGCCACGGCTACC	.	48.0	10.0	66.0	0.0	.	83	.	.	Atlas-SNP
RBM19	9904	hgsc.bcm.edu	hg19	12	114392958	114392958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RBM19	NM_001146699	exon7	c.G899T	p.G300V	GGGGCTCCCCGCA	.	72.0	9.0	93.0	0.0	.	117	.	.	Atlas-SNP
MLXIP	22877	hgsc.bcm.edu	hg19	12	122625584	122625584	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MLXIP	NM_014938	exon16	c.G2592A	p.A864A	GACGGCGCTCTCC	.	41.0	20.0	47.0	0.0	.	46	.	.	Atlas-SNP
PITPNM2	57605	hgsc.bcm.edu	hg19	12	123481370	123481370	+	Silent	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PITPNM2	NM_020845	exon11	c.C1560A	p.S520S	GGGGGAGGAGGTG	.	102.0	56.0	119.0	0.0	.	105	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	130015679	130015679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TMEM132D	NM_133448	exon3	c.A1040G	p.E347G	GTGCGCTCCTTGA	.	103.0	5.0	84.0	0.0	.	299	.	.	Atlas-SNP
STX2	2054	hgsc.bcm.edu	hg19	12	131283121	131283121	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	STX2	NM_194356	exon9	c.C735T	p.H245H	TTTAGCGTGTTCT	.	75.0	7.0	67.0	0.0	.	66	.	.	Atlas-SNP
TPTE2	93492	hgsc.bcm.edu	hg19	13	20004677	20004677	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TPTE2	NM_199254	exon18	c.T1233C	p.C411C	TAGATCACATACA	.	238.0	73.0	267.0	0.0	.	225	.	.	Atlas-SNP
CENPJ	55835	hgsc.bcm.edu	hg19	13	25480425	25480425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CENPJ	NM_018451	exon7	c.C1751T	p.A584V	TCAGCAGCTTGTT	.	86.0	28.0	95.0	0.0	.	116	.	.	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	hg19	13	36700191	36700191	+	Silent	SNP	G	G	A	rs373323934		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	DCLK1_ENST00000255448,colon,carcinoma,0,6	DCLK1	NM_004734	exon2	c.C84T	p.N28N	CAGGCCGTTCACC	.	63.0	18.0	48.0	0.0	.	350	.	.	Atlas-SNP
CCDC169-SOHLH2	100526761	hgsc.bcm.edu	hg19	13	36765969	36765969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001198910	exon10	c.G724A	p.E242K	GGTGTTCGCTGTA	.	179.0	29.0	208.0	0.0	.	.	.	.	Atlas-SNP
TRIM13	10206	hgsc.bcm.edu	hg19	13	50586446	50586446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TRIM13	NM_001007278	exon4	c.A379G	p.T127A	GAGCACACCAAAC	.	112.0	23.0	144.0	0.0	.	30	.	.	Atlas-SNP
THSD1	55901	hgsc.bcm.edu	hg19	13	52952234	52952234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	THSD1	NM_018676	exon5	c.T1871C	p.L624P	CGGATCAGAGTCT	.	43.0	18.0	68.0	0.0	.	89	.	.	Atlas-SNP
KLF12	11278	hgsc.bcm.edu	hg19	13	74289619	74289619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KLF12	NM_007249	exon7	c.C913T	p.R305W	CAGACCGTCTCTG	.	137.0	15.0	138.0	0.0	.	42	.	.	Atlas-SNP
TUBGCP3	10426	hgsc.bcm.edu	hg19	13	113212590	113212590	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TUBGCP3	NM_006322	exon5	c.C468T	p.S156S	GCCCACGCTGCCG	.	103.0	16.0	108.0	0.0	.	74	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24877347	24877347	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NYNRIN	NM_025081	exon3	c.T471C	p.A157A	GGAGGCTGAGGTG	.	21.0	6.0	38.0	0.0	.	120	.	.	Atlas-SNP
SIX4	51804	hgsc.bcm.edu	hg19	14	61190367	61190367	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SIX4	NM_017420	exon1	c.A426G	p.L142L	GCCACGTAGCAGG	.	86.0	19.0	113.0	0.0	.	69	.	.	Atlas-SNP
HEATR4	399671	hgsc.bcm.edu	hg19	14	73945440	73945440	+	Silent	SNP	G	G	A	rs78875724	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HEATR4	NM_203309	exon17	c.C2952T	p.P984P	TTTCTCGGGGGAG	.	170.0	12.0	173.0	0.0	.	126	.	G|0.962;T|0.038	Atlas-SNP
SAMD15	161394	hgsc.bcm.edu	hg19	14	77845085	77845085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SAMD15	NM_001010860	exon1	c.C1324T	p.R442C	GAGCACCGTGAGC	.	143.0	41.0	178.0	0.0	.	60	.	.	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	hg19	14	88970793	88970793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PTPN21	NM_007039	exon6	c.T563C	p.V188A	AAGGCCACTTTTT	.	77.0	12.0	96.0	0.0	.	113	.	.	Atlas-SNP
DLK1	8788	hgsc.bcm.edu	hg19	14	101200731	101200731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DLK1	NM_003836	exon5	c.G650A	p.C217Y	GCCCGTGCCAGAA	.	95.0	33.0	111.0	0.0	.	57	.	.	Atlas-SNP
TRAF3	7187	hgsc.bcm.edu	hg19	14	103371803	103371803	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	TRAF3,NS,carcinoma,+2,1	TRAF3	NM_145725	exon12	c.C1389T	p.D463D	CGGGGACGGGATG	.	89.0	13.0	149.0	0.0	.	60	.	.	Atlas-SNP
OR4M2	390538	hgsc.bcm.edu	hg19	15	22369119	22369119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OR4M2	NM_001004719	exon1	c.A544T	p.T182S	GACATCACACAGG	.	245.0	23.0	312.0	0.0	.	140	.	.	Atlas-SNP
GPR176	11245	hgsc.bcm.edu	hg19	15	40093624	40093624	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GPR176	NM_007223	exon3	c.G1257A	p.A419A	AGAGGGCGCAAAC	.	36.0	10.0	69.0	0.0	.	41	.	.	Atlas-SNP
RPAP1	26015	hgsc.bcm.edu	hg19	15	41810241	41810241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RPAP1	NM_015540	exon23	c.T3935C	p.V1312A	CTATTGACATGAG	.	79.0	5.0	86.0	0.0	.	111	.	.	Atlas-SNP
ZSCAN29	146050	hgsc.bcm.edu	hg19	15	43656143	43656143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZSCAN29	NM_152455	exon4	c.C1660T	p.R554C	GAGCACGGGTTAT	.	109.0	11.0	104.0	0.0	.	57	.	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50884267	50884267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TRPM7	NM_017672	exon26	c.A4165G	p.T1389A	TGCTAGTAGATGA	.	66.0	8.0	71.0	0.0	.	145	.	.	Atlas-SNP
SPG21	51324	hgsc.bcm.edu	hg19	15	65268816	65268816	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SPG21	NM_001127889	exon4	c.T303C	p.D101D	CACTTTATCCAAT	.	218.0	45.0	252.0	0.0	.	29	.	.	Atlas-SNP
ZWILCH	55055	hgsc.bcm.edu	hg19	15	66821892	66821892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZWILCH	NM_017975	exon12	c.G1136A	p.R379H	TACAACGTGGTGA	.	45.0	9.0	71.0	0.0	.	46	.	.	Atlas-SNP
C15orf60	283677	hgsc.bcm.edu	hg19	15	73832844	73832844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C15orf60	NM_001042367	exon3	c.G268T	p.G90C	CTCATTGGTAGCA	.	95.0	4.0	113.0	0.0	.	26	.	.	Atlas-SNP
C15orf59	388135	hgsc.bcm.edu	hg19	15	74043430	74043430	+	Silent	SNP	G	G	A	rs146110202	alternate_allele	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C15orf59	NM_001039614	exon1	c.C42T	p.D14D	GGGGTCGTCACTG	.	41.0	6.0	46.0	0.0	.	38	.	G|1.000;C|0.000	Atlas-SNP
AP3B2	8120	hgsc.bcm.edu	hg19	15	83357549	83357549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	AP3B2	NM_004644	exon4	c.A299G	p.Y100C	TCAGCGTAGCGTA	.	81.0	11.0	102.0	0.0	.	103	.	.	Atlas-SNP
KIF7	374654	hgsc.bcm.edu	hg19	15	90192526	90192526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KIF7	NM_198525	exon4	c.C602T	p.A201V	CGCGCCGCGTTGC	.	64.0	8.0	81.0	0.0	.	130	.	.	Atlas-SNP
GDPGP1	390637	hgsc.bcm.edu	hg19	15	90784264	90784264	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001013657	exon4	c.C124T	p.Q42X	GGGATTCAGTGGC	.	56.0	12.0	81.0	0.0	.	.	.	.	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91424700	91424700	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FURIN	NM_002569	exon16	c.C1977T	p.C659C	AGACTGCCTCAGC	.	75.0	11.0	81.0	0.0	.	85	.	.	Atlas-SNP
MCTP2	55784	hgsc.bcm.edu	hg19	15	94943190	94943190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MCTP2	NM_001159643	exon15	c.G1931A	p.R644H	AAAAGCGCTTTGT	.	108.0	20.0	129.0	0.0	.	122	.	.	Atlas-SNP
FBXL16	146330	hgsc.bcm.edu	hg19	16	744677	744677	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FBXL16	NM_153350	exon5	c.G1248A	p.K416K	GAGGTGCTTCAGC	.	107.0	39.0	119.0	0.0	.	25	.	.	Atlas-SNP
CHTF18	63922	hgsc.bcm.edu	hg19	16	844174	844174	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CHTF18	NM_022092	exon15	c.T1923C	p.S641S	TGCCTCTGCGGGC	.	105.0	54.0	132.0	0.0	.	52	.	.	Atlas-SNP
RPS2	6187	hgsc.bcm.edu	hg19	16	2012581	2012581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RPS2	NM_002952	exon6	c.T626C	p.V209A	TTAGGCACAGGTG	.	68.0	9.0	106.0	0.0	.	18	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3778436	3778436	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CREBBP	NM_004380	exon31	c.G6612A	p.Q2204Q	CTGCTGCTGTTGC	.	46.0	18.0	68.0	0.0	.	546	.	.	Atlas-SNP
VASN	114990	hgsc.bcm.edu	hg19	16	4432614	4432614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	VASN	NM_138440	exon2	c.C1736T	p.A579V	TCATTGCGCCCGC	.	111.0	24.0	135.0	0.0	.	21	.	.	Atlas-SNP
ROGDI	79641	hgsc.bcm.edu	hg19	16	4851539	4851539	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ROGDI	NM_024589	exon3	c.C165T	p.P55P	CTTGGCGGGCCCC	.	61.0	22.0	81.0	0.0	.	11	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9858337	9858337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	GRIN2A,NS,carcinoma,0,1	GRIN2A	NM_000833	exon14	c.C3064T	p.R1022C	CCTGGCGTATGGA	.	54.0	17.0	78.0	0.0	.	366	.	.	Atlas-SNP
TMC5	79838	hgsc.bcm.edu	hg19	16	19471655	19471655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TMC5	NM_001105249	exon6	c.A1147G	p.R383G	AACCTTAGGTATG	.	325.0	125.0	444.0	0.0	.	169	.	.	Atlas-SNP
GSG1L	146395	hgsc.bcm.edu	hg19	16	27895830	27895830	+	Missense_Mutation	SNP	G	G	A	rs141366433		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	GSG1L_ENST00000447459,NS,carcinoma,0,2	GSG1L	NM_001109763	exon3	c.C527T	p.A176V	ACAGCCGCGAAGG	.	78.0	19.0	102.0	0.0	.	82	.	G|1.000;A|0.000	Atlas-SNP
CORO1A	11151	hgsc.bcm.edu	hg19	16	30198463	30198463	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CORO1A	NM_001193333	exon6	c.C555T	p.S185S	CTGGAGCCGAGAT	.	39.0	13.0	59.0	0.0	.	36	.	.	Atlas-SNP
C16orf70	80262	hgsc.bcm.edu	hg19	16	67181027	67181027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C16orf70	NM_025187	exon16	c.T1262C	p.L421P	CGGAACTCCCCTA	.	67.0	23.0	84.0	0.0	.	38	.	.	Atlas-SNP
KIAA0895L	653319	hgsc.bcm.edu	hg19	16	67214463	67214463	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	KIAA0895L,NS,carcinoma,0,1	KIAA0895L	NM_001040715	exon2	c.G51A	p.P17P	GGTAGGCGGGCTG	.	62.0	11.0	102.0	1.0	.	32	.	.	Atlas-SNP
RLTPR	146206	hgsc.bcm.edu	hg19	16	67683458	67683458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RLTPR	NM_001013838	exon20	c.A1855G	p.N619D	AGCGGCAACGCCA	.	35.0	11.0	36.0	0.0	.	124	.	.	Atlas-SNP
SF3B3	23450	hgsc.bcm.edu	hg19	16	70605061	70605061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	SF3B3,NS,adenocarcinoma,0,1	SF3B3	NM_012426	exon25	c.C3472T	p.R1158W	TGTGGGCGGGACC	.	87.0	36.0	90.0	0.0	.	99	.	.	Atlas-SNP
PIEZO1	9780	hgsc.bcm.edu	hg19	16	88786942	88786942	+	Splice_Site	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PIEZO1	NM_001142864	exon42	c.5802-2A>G	.	GGGCCCTGCGGAA	.	41.0	11.0	40.0	0.0	.	79	.	.	Atlas-SNP
ABR	29	hgsc.bcm.edu	hg19	17	909329	909329	+	Silent	SNP	G	G	A	rs375629677		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ABR	NM_021962	exon23	c.C2571T	p.T857T	CACGTCGGTGGAG	.	57.0	7.0	68.0	0.0	.	119	.	.	Atlas-SNP
ATP2A3	489	hgsc.bcm.edu	hg19	17	3844585	3844585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ATP2A3	NM_174956	exon14	c.G1780A	p.V594M	AGCCCACGAAGGT	.	99.0	43.0	99.0	0.0	.	148	.	.	Atlas-SNP
CHD3	1107	hgsc.bcm.edu	hg19	17	7798461	7798461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CHD3	NM_001005271	exon9	c.G1673A	p.R558Q	GTCCCCGATGCAC	.	78.0	14.0	104.0	0.0	.	169	.	.	Atlas-SNP
KCNAB3	9196	hgsc.bcm.edu	hg19	17	7832645	7832645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KCNAB3	NM_004732	exon1	c.G109A	p.G37S	CCCCGCCGGCCGG	.	117.0	9.0	123.0	0.0	.	30	.	.	Atlas-SNP
ELAC2	60528	hgsc.bcm.edu	hg19	17	12897811	12897811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ELAC2	NM_018127	exon22	c.C2039T	p.A680V	AGGGTGGCATCTT	.	98.0	12.0	142.0	0.0	.	48	.	.	Atlas-SNP
CDRT1	374286	hgsc.bcm.edu	hg19	17	15492292	15492292	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CDRT1	NM_006382	exon12	c.G2256A	p.V752V	CTGCTACACACCA	.	94.0	41.0	80.0	0.0	.	83	.	.	Atlas-SNP
TP53I13	90313	hgsc.bcm.edu	hg19	17	27899414	27899414	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TP53I13	NM_138349	exon6	c.G768A	p.P256P	GCTGCCGGGGGCG	.	82.0	9.0	64.0	0.0	.	17	.	.	Atlas-SNP
RHOT1	55288	hgsc.bcm.edu	hg19	17	30530945	30530945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RHOT1	NM_001033568	exon16	c.T1369C	p.Y457H	TCCTACTATGCGA	.	106.0	23.0	94.0	0.0	.	69	.	.	Atlas-SNP
MLLT6	4302	hgsc.bcm.edu	hg19	17	36876002	36876002	+	Splice_Site	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MLLT6	NM_005937	exon14	c.2010-1G>T	.	GCCGCAGGTCCCC	.	164.0	52.0	153.0	0.0	.	80	.	.	Atlas-SNP
PSMB3	5691	hgsc.bcm.edu	hg19	17	36912245	36912245	+	Splice_Site	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PSMB3	NM_002795	exon3	c.296+2T>C	.	AAACGGTGAGTGC	.	72.0	23.0	81.0	0.0	.	9	.	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	hg19	17	38564371	38564371	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TOP2A	NM_001067	exon12	c.C1348T	p.R450X	AGTTTCGGCCCCC	.	227.0	43.0	200.0	0.0	.	124	.	.	Atlas-SNP
KRT12	3859	hgsc.bcm.edu	hg19	17	39019563	39019563	+	Silent	SNP	G	G	A	rs373922617	alternate_allele	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KRT12	NM_000223	exon6	c.C1128T	p.A376A	GCCCTCGGCTTCG	.	150.0	55.0	140.0	0.0	.	53	.	.	Atlas-SNP
KCNH4	23415	hgsc.bcm.edu	hg19	17	40315341	40315341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KCNH4	NM_012285	exon14	c.G2489A	p.G830D	TCAATGCCATCCA	.	45.0	12.0	52.0	0.0	.	105	.	.	Atlas-SNP
AOC2	314	hgsc.bcm.edu	hg19	17	41001289	41001289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	AOC2,colon,carcinoma,0,1	AOC2	NM_009590	exon2	c.C1775T	p.A592V	CTAATGCGTGGGG	.	100.0	24.0	83.0	0.0	.	61	.	.	Atlas-SNP
TMUB2	79089	hgsc.bcm.edu	hg19	17	42266521	42266521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TMUB2	NM_001076674	exon3	c.C167T	p.T56I	TCTCTACCTACGT	.	75.0	11.0	80.0	0.0	.	29	.	.	Atlas-SNP
FMNL1	752	hgsc.bcm.edu	hg19	17	43322423	43322423	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FMNL1	NM_005892	exon21	c.G2676A	p.P892P	GTACCCGCAACTC	.	107.0	18.0	107.0	0.0	.	78	.	.	Atlas-SNP
NSF	4905	hgsc.bcm.edu	hg19	17	44803929	44803929	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NSF	NM_006178	exon16	c.G1776A	p.A592A	TGATGCGTACAAA	.	94.0	30.0	92.0	0.0	.	27	.	.	Atlas-SNP
TMEM92	162461	hgsc.bcm.edu	hg19	17	48356249	48356249	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TMEM92	NM_153229	exon4	c.G258A	p.P86P	AGAGCCGGAGCCA	.	43.0	6.0	60.0	0.0	.	13	.	.	Atlas-SNP
ANKFN1	162282	hgsc.bcm.edu	hg19	17	54543932	54543932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ANKFN1	NM_153228	exon14	c.G1782T	p.Q594H	CATCCAGGTATGT	.	102.0	11.0	90.0	0.0	.	115	.	.	Atlas-SNP
BZRAP1	9256	hgsc.bcm.edu	hg19	17	56385233	56385233	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BZRAP1	NM_004758	exon23	c.C4801T	p.R1601X	GGACTCGGACACC	.	76.0	17.0	91.0	0.0	.	287	.	.	Atlas-SNP
MTMR4	9110	hgsc.bcm.edu	hg19	17	56584581	56584581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MTMR4	NM_004687	exon9	c.T765G	p.I255M	TTTAGCAATGGAC	.	88.0	27.0	97.0	0.0	.	91	.	.	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	hg19	17	62272409	62272409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	TEX2,NS,carcinoma,+1,1	TEX2	NM_018469	exon3	c.C1691T	p.A564V	AAAGTCGCATGGT	.	87.0	8.0	98.0	0.0	.	89	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65924473	65924473	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BPTF	NM_004459	exon18	c.A6132G	p.K2044K	TTAGAAACGACTG	.	217.0	24.0	222.0	0.0	.	415	.	.	Atlas-SNP
ABCA9	10350	hgsc.bcm.edu	hg19	17	67029868	67029868	+	Silent	SNP	G	G	A	rs146940647	bycluster	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ABCA9	NM_080283	exon9	c.C1275T	p.P425P	CTTACCGGGCAAA	.	268.0	41.0	297.0	0.0	.	192	.	G|1.000;A|0.000	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	hg19	17	72845978	72845978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GRIN2C	NM_000835	exon7	c.C1586T	p.T529M	ATGCCCGTCTCCA	.	88.0	9.0	81.0	0.0	.	144	.	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	hg19	17	74005326	74005326	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	EVPL,NS,carcinoma,0,1	EVPL	NM_001988	exon22	c.C3960T	p.H1320H	CTTCTCGTGGCGC	.	19.0	4.0	25.0	0.0	.	155	.	.	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	hg19	17	76535911	76535911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DNAH17	NM_173628	exon18	c.T2584C	p.Y862H	TGACATAATCCTT	.	310.0	118.0	309.0	0.0	.	347	.	.	Atlas-SNP
CBX8	57332	hgsc.bcm.edu	hg19	17	77769341	77769341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CBX8	NM_020649	exon5	c.A263G	p.K88R	TTGGCCTTTGCCT	.	38.0	5.0	37.0	0.0	.	42	.	.	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79096552	79096552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	AATK	NM_001080395	exon11	c.T1184C	p.L395P	TAGGACAGCAGCA	.	83.0	36.0	84.0	0.0	.	102	.	.	Atlas-SNP
GAREM	64762	hgsc.bcm.edu	hg19	18	29850320	29850320	+	Silent	SNP	G	G	A	rs368693154		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_022751	exon5	c.C1593T	p.N531N	TGGGGCGTTCAGG	.	112.0	22.0	131.0	0.0	.	.	.	.	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	hg19	18	45566490	45566490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZBTB7C	NM_001039360	exon2	c.A989C	p.D330A	CCGTAGTCGTTCT	.	62.0	8.0	48.0	0.0	.	73	.	.	Atlas-SNP
MEX3C	51320	hgsc.bcm.edu	hg19	18	48723154	48723154	+	Silent	SNP	G	G	C	rs62092914		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	MEX3C_ENST00000406189,NS,carcinoma,0,1	MEX3C	NM_016626	exon1	c.C537G	p.A179A	CGCCGCGGCCGCC	.	56.0	11.0	37.0	0.0	.	77	.	.	Atlas-SNP
RTTN	25914	hgsc.bcm.edu	hg19	18	67753861	67753861	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RTTN	NM_173630	exon32	c.T4362C	p.D1454D	AGTATAATCCTTT	.	307.0	47.0	294.0	0.0	.	184	.	.	Atlas-SNP
PPAP2C	8612	hgsc.bcm.edu	hg19	19	282794	282794	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PPAP2C	NM_177543	exon4	c.G561A	p.S187S	GTGTCCCGAGTAG	.	115.0	25.0	90.0	0.0	.	38	.	.	Atlas-SNP
ODF3L2	284451	hgsc.bcm.edu	hg19	19	464152	464152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ODF3L2	NM_182577	exon4	c.C562T	p.R188C	GGGTGCGGCCCAC	.	64.0	19.0	69.0	0.0	.	18	.	.	Atlas-SNP
REEP6	92840	hgsc.bcm.edu	hg19	19	1495386	1495386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	REEP6	NM_138393	exon2	c.C209T	p.S70L	ATGCCTCGTGAGT	.	51.0	8.0	42.0	0.0	.	21	.	.	Atlas-SNP
TLE2	7089	hgsc.bcm.edu	hg19	19	3006585	3006585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TLE2	NM_001144761	exon16	c.C1375A	p.P459T	GCCGCGGGATGCC	.	222.0	84.0	227.0	0.0	.	35	.	.	Atlas-SNP
CATSPERD	257062	hgsc.bcm.edu	hg19	19	5778650	5778650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	TMEM146,NS,lymphoid_neoplasm,0,2	.	NM_152784	exon22	c.G2360A	p.R787H	CGGGACGCCACCG	.	174.0	31.0	161.0	0.0	.	.	.	.	Atlas-SNP
PSPN	5623	hgsc.bcm.edu	hg19	19	6375770	6375770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PSPN	NM_004158	exon1	c.G91A	p.V31M	CGGCCACGGGAAC	.	222.0	45.0	220.0	0.0	.	5	.	.	Atlas-SNP
XAB2	56949	hgsc.bcm.edu	hg19	19	7687478	7687478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	XAB2	NM_020196	exon11	c.T1441C	p.Y481H	ACTTGTACACGCG	.	39.0	5.0	35.0	0.0	.	69	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8145942	8145942	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FBN3	NM_032447	exon58	c.C7398T	p.G2466G	GAAGGCGCCCACA	.	35.0	6.0	24.0	0.0	.	300	.	.	Atlas-SNP
OR7D4	125958	hgsc.bcm.edu	hg19	19	9324680	9324680	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	OR7D4,NS,carcinoma,0,1	OR7D4	NM_001005191	exon1	c.C834T	p.Y278Y	CATGGCGTACATC	.	68.0	27.0	66.0	0.0	.	66	.	.	Atlas-SNP
DOCK6	57572	hgsc.bcm.edu	hg19	19	11322519	11322519	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DOCK6	NM_020812	exon37	c.C4684T	p.L1562L	CCGTCAGGATCAT	.	69.0	11.0	88.0	0.0	.	104	.	.	Atlas-SNP
RFX1	5989	hgsc.bcm.edu	hg19	19	14090352	14090352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RFX1	NM_002918	exon7	c.A741T	p.R247S	CACAGATCTCTGG	.	89.0	11.0	76.0	0.0	.	63	.	.	Atlas-SNP
JAK3	3718	hgsc.bcm.edu	hg19	19	17942173	17942173	+	Missense_Mutation	SNP	G	G	A	rs200202992	alternate_allele	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	JAK3_ENST00000458235,head_neck,carcinoma,0,3	JAK3	NM_000215	exon21	c.C2842T	p.R948C	GGTCGCGGTGCAC	.	55.0	4.0	66.0	1.0	.	341	.	.	Atlas-SNP
MAST3	23031	hgsc.bcm.edu	hg19	19	18218416	18218416	+	Missense_Mutation	SNP	G	G	A	rs368179436		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MAST3	NM_015016	exon2	c.G59A	p.R20H	TGCCACGCCGAGG	.	52.0	7.0	68.0	0.0	.	83	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23543832	23543832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	ZNF91_ENST00000300619,NS,carcinoma,0,3	ZNF91	NM_003430	exon4	c.G1949A	p.R650K	TGAATTCTCTTAT	.	179.0	27.0	162.0	0.0	.	349	.	.	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30935510	30935510	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF536	NM_014717	exon2	c.C1041T	p.C347C	CCGCTGCGAGGTG	.	66.0	14.0	54.0	0.0	.	424	.	.	Atlas-SNP
PEPD	5184	hgsc.bcm.edu	hg19	19	34003533	34003533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PEPD	NM_000285	exon2	c.G167A	p.R56H	CAGTAGCGCTGAG	.	76.0	12.0	59.0	0.0	.	48	.	.	Atlas-SNP
LSM14A	26065	hgsc.bcm.edu	hg19	19	34685491	34685491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LSM14A	NM_001114093	exon2	c.T230A	p.V77D	TTACTGTTTGTGA	.	127.0	40.0	126.0	0.0	.	44	.	.	Atlas-SNP
ZNF568	374900	hgsc.bcm.edu	hg19	19	37440932	37440932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF568	NM_198539	exon7	c.C877T	p.L293F	TCAAACCTTATTA	.	94.0	29.0	99.0	0.0	.	106	.	.	Atlas-SNP
ZNF585A	199704	hgsc.bcm.edu	hg19	19	37643170	37643170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF585A	NM_199126	exon6	c.A1466G	p.H489R	CCAGTGTGAATTT	.	283.0	37.0	261.0	0.0	.	117	.	.	Atlas-SNP
ZNF793	390927	hgsc.bcm.edu	hg19	19	38028487	38028487	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF793	NM_001013659	exon8	c.A927G	p.R309R	AGAGAGACCCTTT	.	93.0	18.0	114.0	0.0	.	50	.	.	Atlas-SNP
ECH1	1891	hgsc.bcm.edu	hg19	19	39307754	39307754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ECH1	NM_001398	exon6	c.C539T	p.T180I	CAGGCGGTGACAA	.	107.0	37.0	86.0	0.0	.	14	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40392050	40392050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FCGBP	NM_003890	exon17	c.C8336T	p.A2779V	ACGCAGGCTTGGC	.	207.0	40.0	212.0	0.0	.	416	.	.	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	hg19	19	44740750	44740750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF227	NM_182490	exon6	c.A2167G	p.K723E	TGTGGTAAGGCCT	.	88.0	34.0	104.0	0.0	.	62	.	.	Atlas-SNP
SYMPK	8189	hgsc.bcm.edu	hg19	19	46318890	46318890	+	Silent	SNP	T	T	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SYMPK	NM_004819	exon27	c.A3753T	p.G1251G	ATCTTCTCCAACA	.	102.0	19.0	112.0	0.0	.	104	.	.	Atlas-SNP
KDELR1	10945	hgsc.bcm.edu	hg19	19	48887541	48887541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KDELR1	NM_006801	exon4	c.G550A	p.G184S	CCAGGCCTGCCAC	.	117.0	19.0	143.0	0.0	.	26	.	.	Atlas-SNP
PNKP	11284	hgsc.bcm.edu	hg19	19	50370458	50370458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PNKP	NM_007254	exon2	c.G4T	p.G2C	CCTCGCCCATCCT	.	113.0	20.0	93.0	0.0	.	71	.	.	Atlas-SNP
ZNF528	84436	hgsc.bcm.edu	hg19	19	52919436	52919436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF528	NM_032423	exon7	c.C1331T	p.T444I	GTGGCACAGCGTT	.	126.0	15.0	128.0	0.0	.	95	.	.	Atlas-SNP
ZNF534	147658	hgsc.bcm.edu	hg19	19	52941014	52941014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF534	NM_001143939	exon4	c.G340A	p.G114R	AGTGCAGGAAACA	.	274.0	88.0	306.0	0.0	.	105	.	.	Atlas-SNP
MYADM	91663	hgsc.bcm.edu	hg19	19	54377623	54377623	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MYADM	NM_138373	exon3	c.C840T	p.S280S	CTGCAGCCGCAGC	.	86.0	13.0	73.0	0.0	.	39	.	.	Atlas-SNP
PRKCG	5582	hgsc.bcm.edu	hg19	19	54406355	54406355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PRKCG	NM_002739	exon15	c.C1604T	p.S535F	GGAAGTCTGTCGA	.	144.0	44.0	113.0	0.0	.	246	.	.	Atlas-SNP
LENG8	114823	hgsc.bcm.edu	hg19	19	54965734	54965734	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	LENG8,NS,carcinoma,0,1	LENG8	NM_052925	exon6	c.G552A	p.Q184Q	CCCTCAGCCTGGG	.	123.0	26.0	136.0	0.0	.	73	.	.	Atlas-SNP
DNAAF3	352909	hgsc.bcm.edu	hg19	19	55676758	55676758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001256714	exon4	c.C506T	p.P169L	TTCTCCGGTTCCT	.	95.0	11.0	73.0	0.0	.	.	.	.	Atlas-SNP
C20orf96	140680	hgsc.bcm.edu	hg19	20	256674	256674	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C20orf96	NM_153269	exon10	c.G966A	p.E322E	TTGGAGCTCTTCC	.	86.0	38.0	126.0	0.0	.	28	.	.	Atlas-SNP
CENPB	1059	hgsc.bcm.edu	hg19	20	3766272	3766272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CENPB	NM_001810	exon1	c.G859A	p.A287T	ACTCTGCAGCCAT	.	233.0	16.0	198.0	0.0	.	24	.	.	Atlas-SNP
PROKR2	128674	hgsc.bcm.edu	hg19	20	5294612	5294612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	PROKR2,NS,carcinoma,0,1	PROKR2	NM_144773	exon1	c.G404A	p.R135H	ACGGTGCGCAGGT	.	173.0	23.0	121.0	1.0	.	90	.	.	Atlas-SNP
SSTR4	6754	hgsc.bcm.edu	hg19	20	23017003	23017003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	SSTR4,NS,carcinoma,0,2	SSTR4	NM_001052	exon1	c.G883A	p.V295M	AACCACGTGTCCC	.	86.0	17.0	80.0	0.0	.	83	.	.	Atlas-SNP
CD93	22918	hgsc.bcm.edu	hg19	20	23065156	23065156	+	Silent	SNP	G	G	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CD93	NM_012072	exon1	c.C1674A	p.P558P	CTCCTGGGGGCCA	.	52.0	9.0	48.0	0.0	.	84	.	.	Atlas-SNP
GSS	2937	hgsc.bcm.edu	hg19	20	33519901	33519901	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GSS	NM_000178	exon10	c.T870C	p.H290H	GGCAGCATGTGAC	.	271.0	37.0	248.0	0.0	.	33	.	.	Atlas-SNP
FAM65C	140876	hgsc.bcm.edu	hg19	20	49225478	49225478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FAM65C	NM_080829	exon9	c.G643A	p.A215T	GGCGTGCGTAGCC	.	91.0	18.0	98.0	0.0	.	87	.	.	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	hg19	20	52193651	52193651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF217	NM_006526	exon3	c.G1652A	p.S551N	TGCGCACTGTCAG	.	89.0	28.0	74.0	0.0	.	227	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60888755	60888755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LAMA5	NM_005560	exon63	c.C8608T	p.R2870W	CTGGCCGCAGGTT	.	70.0	7.0	41.0	0.0	.	268	.	.	Atlas-SNP
SRMS	6725	hgsc.bcm.edu	hg19	20	62172859	62172859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SRMS	NM_080823	exon6	c.G1061A	p.R354Q	ACGTTCCGGGCGG	.	124.0	26.0	123.0	0.0	.	48	.	.	Atlas-SNP
TNFRSF6B	8771	hgsc.bcm.edu	hg19	20	62328389	62328389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TNFRSF6B	NM_003823	exon1	c.A269G	p.Y90C	GCCGCTACTGCAA	.	115.0	16.0	102.0	0.0	.	22	.	.	Atlas-SNP
ABHD16B	140701	hgsc.bcm.edu	hg19	20	62493729	62493729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ABHD16B	NM_080622	exon1	c.C836T	p.A279V	CGCTGGCGCTGAA	.	57.0	9.0	51.0	0.0	.	22	.	.	Atlas-SNP
KRTAP13-2	337959	hgsc.bcm.edu	hg19	21	31744329	31744329	+	Missense_Mutation	SNP	G	G	A	rs202124632	bycluster	TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KRTAP13-2	NM_181621	exon1	c.C203T	p.T68M	TAGGACGTCTGGC	.	116.0	23.0	145.0	0.0	.	29	.	G|0.999;A|0.001	Atlas-SNP
C21orf2	755	hgsc.bcm.edu	hg19	21	45750586	45750586	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C21orf2	NM_001271441	exon6	c.A759G	p.S253S	GCCCTGTGAGGCT	.	101.0	21.0	108.0	0.0	.	10	.	.	Atlas-SNP
SLC19A1	6573	hgsc.bcm.edu	hg19	21	46951806	46951806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SLC19A1	NM_001205206	exon3	c.A446G	p.Y149C	CGCTGGTAGCGCG	.	48.0	5.0	67.0	0.0	.	53	.	.	Atlas-SNP
DIP2A	23181	hgsc.bcm.edu	hg19	21	47959885	47959885	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DIP2A	NM_206891	exon17	c.C2017G	p.L673V	GAGGCGCTGACTG	.	58.0	4.0	49.0	0.0	.	332	.	.	Atlas-SNP
PEX26	55670	hgsc.bcm.edu	hg19	22	18561184	18561184	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PEX26	NM_001127649	exon1	c.G42A	p.G14G	CAGGGGGCTCGGG	.	83.0	32.0	57.0	0.0	.	27	.	.	Atlas-SNP
HIRA	7290	hgsc.bcm.edu	hg19	22	19344473	19344473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HIRA	NM_003325	exon19	c.C2336T	p.T779I	TGCAAAGTAGAGA	.	110.0	9.0	78.0	0.0	.	100	.	.	Atlas-SNP
RTDR1	27156	hgsc.bcm.edu	hg19	22	23406095	23406095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RTDR1	NM_014433	exon5	c.C638T	p.A213V	AGGAGCGCACGGG	.	88.0	31.0	77.0	0.0	.	39	.	.	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26159258	26159258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	MYO18B,NS,carcinoma,0,1	MYO18B	NM_032608	exon3	c.C100A	p.P34T	GTCATCCCAGGGG	.	118.0	21.0	118.0	0.0	.	322	.	.	Atlas-SNP
NF2	4771	hgsc.bcm.edu	hg19	22	30069387	30069387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	NF2_ENST00000403999,NS,carcinoma,0,4	NF2	NM_000268	exon12	c.C1252T	p.R418C	GCGATTCGCACGG	.	155.0	20.0	136.0	0.0	.	1312	.	.	Atlas-SNP
SEC14L3	266629	hgsc.bcm.edu	hg19	22	30857443	30857443	+	Missense_Mutation	SNP	G	G	A	rs144684185		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SEC14L3	NM_174975	exon11	c.C935T	p.A312V	ATGTCCGCACCAT	.	78.0	16.0	65.0	0.0	.	46	.	G|1.000;A|0.000	Atlas-SNP
TIMP3	7078	hgsc.bcm.edu	hg19	22	33255323	33255323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	TIMP3,NS,adenoma,0,1	TIMP3	NM_000362	exon5	c.G595C	p.A199P	GGATGGGCCCCCC	.	49.0	18.0	27.0	0.0	.	31	.	.	Atlas-SNP
CACNG2	10369	hgsc.bcm.edu	hg19	22	36960548	36960548	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CACNG2	NM_006078	exon4	c.C822T	p.S274S	GTCCCTGCTGAGC	.	143.0	22.0	119.0	0.0	.	43	.	.	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	hg19	22	37904630	37904630	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CARD10	NM_014550	exon5	c.T969C	p.H323H	CCAGTCATGCTCT	.	61.0	21.0	46.0	0.0	.	55	.	.	Atlas-SNP
CDC42EP1	11135	hgsc.bcm.edu	hg19	22	37964226	37964226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CDC42EP1	NM_152243	exon3	c.C575T	p.S192F	CTGACTCTCTCTT	.	70.0	19.0	67.0	0.0	.	53	.	.	Atlas-SNP
APOBEC3G	60489	hgsc.bcm.edu	hg19	22	39482298	39482298	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	APOBEC3G	NM_021822	exon6	c.C750T	p.H250H	TAAACACGGTTTC	.	131.0	22.0	126.0	0.0	.	69	.	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	hg19	22	44168976	44168976	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	EFCAB6	NM_022785	exon4	c.T147C	p.A49A	TGCAACAGCTGTG	.	113.0	14.0	99.0	0.0	.	177	.	.	Atlas-SNP
IL3RA	3563	hgsc.bcm.edu	hg19	X	1484120	1484120	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IL3RA	NM_002183	exon9	c.C849T	p.S283S	CTTGAGCGCCTGG	.	292.0	16.0	260.0	0.0	.	49	.	.	Atlas-SNP
FAM9A	171482	hgsc.bcm.edu	hg19	X	8763403	8763403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FAM9A	NM_174951	exon7	c.G547A	p.A183T	TCTCTGCGATGTA	.	84.0	28.0	91.0	0.0	.	57	.	.	Atlas-SNP
DCAF8L2	347442	hgsc.bcm.edu	hg19	X	27765399	27765399	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DCAF8L2	NM_001136533	exon1	c.A387G	p.E129E	GGAGGAAGAGGAG	.	34.0	5.0	33.0	0.0	.	79	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34149344	34149344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FAM47A	NM_203408	exon1	c.G1052A	p.R351H	TCCGAGCGGAGAC	.	157.0	26.0	130.0	0.0	.	249	.	.	Atlas-SNP
RP2	6102	hgsc.bcm.edu	hg19	X	46713333	46713333	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RP2	NM_006915	exon2	c.T525C	p.H175H	CATTCATGACTTT	.	225.0	9.0	201.0	0.0	.	37	.	.	Atlas-SNP
TIMP1	7076	hgsc.bcm.edu	hg19	X	47444965	47444965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TIMP1	NM_003254	exon5	c.C352T	p.H118Y	CTCTTGCACATCA	.	240.0	48.0	233.0	0.0	.	12	.	.	Atlas-SNP
GRIPAP1	56850	hgsc.bcm.edu	hg19	X	48847397	48847397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GRIPAP1	NM_020137	exon7	c.A583G	p.K195E	CCCATTTCAGCTC	.	176.0	47.0	169.0	0.0	.	128	.	.	Atlas-SNP
PRICKLE3	4007	hgsc.bcm.edu	hg19	X	49032590	49032590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PRICKLE3	NM_006150	exon9	c.G1280A	p.R427H	AGAAAGCGGGAGG	.	92.0	19.0	98.0	0.0	.	59	.	.	Atlas-SNP
CACNA1F	778	hgsc.bcm.edu	hg19	X	49082873	49082873	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CACNA1F	NM_005183	exon11	c.C1494T	p.C498C	TCACAGGCAGCGT	.	85.0	5.0	74.0	0.0	.	218	.	.	Atlas-SNP
HEPH	9843	hgsc.bcm.edu	hg19	X	65483530	65483530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HEPH	NM_138737	exon20	c.G3406A	p.A1136T	GAAAAAGGTACGT	.	286.0	81.0	238.0	0.0	.	224	.	.	Atlas-SNP
HDX	139324	hgsc.bcm.edu	hg19	X	83723918	83723918	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HDX	NM_144657	exon3	c.C813T	p.S271S	GTAATCGCTAACT	.	159.0	35.0	166.0	0.0	.	124	.	.	Atlas-SNP
ESX1	80712	hgsc.bcm.edu	hg19	X	103498837	103498837	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ESX1	NM_153448	exon2	c.G504A	p.A168A	TTACCGCGCCACA	.	165.0	50.0	152.0	0.0	.	57	.	.	Atlas-SNP
TEX13A	56157	hgsc.bcm.edu	hg19	X	104464092	104464092	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TEX13A	NM_031274	exon5	c.C784T	p.Q262X	CCTTCTGCCCCCA	.	169.0	45.0	160.0	0.0	.	55	.	.	Atlas-SNP
CAPN6	827	hgsc.bcm.edu	hg19	X	110491972	110491972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CAPN6	NM_014289	exon10	c.C1309T	p.H437Y	GGTGGTGGAGGCG	.	157.0	55.0	140.0	0.0	.	120	.	.	Atlas-SNP
MCTS1	28985	hgsc.bcm.edu	hg19	X	119739358	119739358	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MCTS1	NM_001137554	exon2	c.T111C	p.I37I	AGGTATTGAACCA	.	479.0	121.0	399.0	1.0	.	40	.	.	Atlas-SNP
C1GALT1C1	29071	hgsc.bcm.edu	hg19	X	119760167	119760167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C1GALT1C1	NM_152692	exon3	c.G855C	p.Q285H	ATGCATCTGATTT	.	344.0	111.0	271.0	0.0	.	22	.	.	Atlas-SNP
GLUD2	2747	hgsc.bcm.edu	hg19	X	120181885	120181885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GLUD2	NM_012084	exon1	c.T347C	p.L116P	ATGTGCTGAGTCT	.	533.0	92.0	484.0	0.0	.	89	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123191803	123191803	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	STAG2	NM_001042749	exon15	c.G1392A	p.L464L	GACATTGGTTTTT	.	132.0	14.0	126.0	0.0	.	309	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123517731	123517731	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001163278	exon30	c.C7050T	p.G2350G	GATATCGCCATAA	.	210.0	25.0	179.0	0.0	.	.	.	.	Atlas-SNP
OCRL	4952	hgsc.bcm.edu	hg19	X	128701327	128701327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OCRL	NM_000276	exon14	c.C1453T	p.R485W	ACAGACCGGTGGG	.	518.0	161.0	469.0	0.0	.	117	.	.	Atlas-SNP
BCORL1	63035	hgsc.bcm.edu	hg19	X	129185869	129185869	+	Silent	SNP	T	T	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BCORL1	NM_021946	exon11	c.T4731C	p.H1577H	CCTACATAATCCT	.	207.0	9.0	195.0	0.0	.	213	.	.	Atlas-SNP
ENOX2	10495	hgsc.bcm.edu	hg19	X	129759306	129759306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ENOX2	NM_182314	exon16	c.G1815T	p.E605D	CAAGCCCTCGAAG	.	314.0	13.0	308.0	0.0	.	70	.	.	Atlas-SNP
TFDP3	51270	hgsc.bcm.edu	hg19	X	132352255	132352255	+	Silent	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TFDP3	NM_016521	exon1	c.C33T	p.N11N	TTCTTCGTTAGCT	.	268.0	85.0	259.0	0.0	.	92	.	.	Atlas-SNP
SAGE1	55511	hgsc.bcm.edu	hg19	X	134987456	134987456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SAGE1	NM_018666	exon5	c.G359A	p.G120D	AAAATGGCCAATC	.	107.0	13.0	108.0	0.0	.	160	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135431189	135431189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GPR112	NM_153834	exon6	c.A5324G	p.K1775R	GCTTTAAGAGTGC	.	339.0	94.0	293.0	0.0	.	459	.	.	Atlas-SNP
ZIC3	7547	hgsc.bcm.edu	hg19	X	136648912	136648912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZIC3	NM_003413	exon1	c.C62T	p.A21V	TCGGCGCGCCGCG	.	151.0	16.0	126.0	0.0	.	93	.	.	Atlas-SNP
SOX3	6658	hgsc.bcm.edu	hg19	X	139586440	139586440	+	Silent	SNP	C	C	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SOX3	NM_005634	exon1	c.G786A	p.T262T	CACGTGCGTGTAC	.	168.0	21.0	160.0	0.0	.	44	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142717165	142717165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SLITRK4	NM_001184750	exon2	c.C1760T	p.P587L	GCAGACGGCTTAT	.	180.0	20.0	145.0	0.0	.	162	.	.	Atlas-SNP
MTMR1	8776	hgsc.bcm.edu	hg19	X	149931129	149931129	+	Missense_Mutation	SNP	G	G	A	rs200100741		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MTMR1	NM_003828	exon15	c.G1925A	p.R642H	CCACGCGCGCCGT	.	175.0	53.0	151.0	0.0	.	82	.	.	Atlas-SNP
ATP6	0	hgsc.bcm.edu	hg19	MT	8673	8673	+	Silent	SNP	A	A	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	ENST00000361899	exon1	c.A147G	p.L49L	ATGACTAATCAAA	.	51.0	5.0	24.0	0.0	.	.	.	.	Atlas-SNP
HEXDC	284004	hgsc.bcm.edu	hg19	17	80400207	80400208	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.,1	HEXDC	NM_173620	exon12	c.1497_1498insC	p.L499fs	.	.	96.0	17.0	96.0	0.0	.	43	.	.	Atlas-INDEL
SPAG17	200162	hgsc.bcm.edu	hg19	1	118539117	118539117	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SPAG17	NM_206996	exon34	c.4930delG	p.V1644fs	.	.	299.0	42.0	175.0	0.0	.	263	.	.	Atlas-INDEL
PPP6R2	9701	hgsc.bcm.edu	hg19	22	50879410	50879410	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PPP6R2	NM_001242898	exon22	c.2533delG	p.A845fs	.	.	87.0	18.0	84.0	0.0	.	71	.	.	Atlas-INDEL
PHF21A	51317	hgsc.bcm.edu	hg19	11	45955607	45955607	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PHF21A	NM_001101802	exon18	c.1956delT	p.P652fs	.	.	83.0	25.0	72.0	0.0	.	107	.	.	Atlas-INDEL
DMRTC2	63946	hgsc.bcm.edu	hg19	19	42352585	42352585	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DMRTC2	NM_001040283	exon4	c.435delA	p.T145fs	.	.	257.0	45.0	254.0	0.0	.	31	.	.	Atlas-INDEL
MPP5	64398	hgsc.bcm.edu	hg19	14	67768752	67768755	+	Frame_Shift_Del	DEL	GAGA	GAGA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	GAGA	GAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MPP5	NM_022474	exon6	c.717_720del	p.239_240del	.	.	123.0	50.0	195.0	0.0	.	46	.	.	Atlas-INDEL
FAM217A	222826	hgsc.bcm.edu	hg19	6	4069257	4069259	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_173563	exon7	c.1199_1201del	p.400_401del	.	.	177.0	32.0	135.0	0.0	.	.	.	.	Atlas-INDEL
BAP1	8314	hgsc.bcm.edu	hg19	3	52437802	52437803	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BAP1	NM_004656	exon13	c.1359_1360del	p.453_454del	.	.	52.0	25.0	52.0	0.0	.	371	.	.	Atlas-INDEL
RXRB	6257	hgsc.bcm.edu	hg19	6	33164232	33164233	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RXRB	NM_021976	exon5	c.972_973insG	p.G324fs	.	.	113.0	10.0	85.0	0.0	.	34	.	.	Atlas-INDEL
SAMD7	344658	hgsc.bcm.edu	hg19	3	169656232	169656233	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SAMD7	NM_182610	exon9	c.1279_1280insT	p.I427fs	.	.	139.0	38.0	157.0	0.0	.	69	.	.	Atlas-INDEL
DENND4B	9909	hgsc.bcm.edu	hg19	1	153916546	153916547	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DENND4B	NM_014856	exon2	c.305_306insC	p.L102fs	.	.	167.0	24.0	132.0	0.0	.	210	.	.	Atlas-INDEL
THSD4	79875	hgsc.bcm.edu	hg19	15	72057470	72057470	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	THSD4	NM_024817	exon15	c.2700delA	p.K900fs	.	.	113.0	20.0	136.0	0.0	.	75	.	.	Atlas-INDEL
LRRC8D	55144	hgsc.bcm.edu	hg19	1	90400489	90400498	+	Frame_Shift_Del	DEL	ACGGCACTAA	ACGGCACTAA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	ACGGCACTAA	ACGGCACTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LRRC8D	NM_018103	exon3	c.1861_1870del	p.621_624del	.	.	152.0	16.0	107.0	0.0	.	78	.	.	Atlas-INDEL
PABPC1L2A	340529	hgsc.bcm.edu	hg19	X	72298895	72298897	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001012977	exon1	c.330_332del	p.110_111del	.	.	1725.0	152.0	1524.0	0.0	.	.	.	.	Atlas-INDEL
SPAG9	9043	hgsc.bcm.edu	hg19	17	49071264	49071266	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SPAG9	NM_001130528	exon19	c.2258_2260del	p.753_754del	.	.	105.0	12.0	117.0	0.0	.	151	.	.	Atlas-INDEL
IRF2BP1	26145	hgsc.bcm.edu	hg19	19	46387532	46387532	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IRF2BP1	NM_015649	exon1	c.1502delT	p.L501fs	.	.	87.0	16.0	81.0	0.0	.	23	.	.	Atlas-INDEL
TENM3	55714	hgsc.bcm.edu	hg19	4	183609359	183609359	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001080477	exon11	c.2075delT	p.M692fs	.	.	49.0	16.0	62.0	0.0	.	.	.	.	Atlas-INDEL
MICALL2	79778	hgsc.bcm.edu	hg19	7	1487299	1487299	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MICALL2	NM_182924	exon4	c.438delA	p.P146fs	.	.	157.0	47.0	109.0	0.0	.	63	.	.	Atlas-INDEL
SPACA4	171169	hgsc.bcm.edu	hg19	19	49110275	49110275	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SPACA4	NM_133498	exon1	c.39delG	p.L13fs	.	.	41.0	15.0	38.0	0.0	.	9	.	.	Atlas-INDEL
AKAP17A	8227	hgsc.bcm.edu	hg19	X	1712781	1712781	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	AKAP17A	NM_005088	exon2	c.425delC	p.P142fs	.	.	167.0	26.0	161.0	0.0	.	46	.	.	Atlas-INDEL
DEPDC1	55635	hgsc.bcm.edu	hg19	1	68948426	68948427	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DEPDC1	NM_001114120	exon8	c.1065_1066insA	p.N355fs	.	.	77.0	21.0	148.0	0.0	.	102	.	.	Atlas-INDEL
C11orf54	28970	hgsc.bcm.edu	hg19	11	93486913	93486914	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C11orf54	NM_014039	exon4	c.220_221insA	p.Q74fs	.	.	103.0	30.0	100.0	0.0	.	23	.	.	Atlas-INDEL
USP44	84101	hgsc.bcm.edu	hg19	12	95927482	95927483	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	USP44	NM_032147	exon2	c.551_552insA	p.I184fs	.	.	92.0	41.0	89.0	0.0	.	83	.	.	Atlas-INDEL
PABPC1L2B	645974	hgsc.bcm.edu	hg19	X	72223807	72223809	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_001042506	exon1	c.325_327del	p.109_109del	.	.	1742.0	173.0	1522.0	0.0	.	.	.	.	Atlas-INDEL
KLK6	5653	hgsc.bcm.edu	hg19	19	51462437	51462437	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	KLK6	NM_001012964	exon6	c.719delC	p.T240fs	.	.	145.0	30.0	155.0	0.0	.	35	.	.	Atlas-INDEL
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38130772	38130773	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	TRIOBP	NM_001039141	exon9	c.4429_4430insG	p.W1477fs	.	.	89.0	13.0	99.0	0.0	.	262	.	.	Atlas-INDEL
NDC80	10403	hgsc.bcm.edu	hg19	18	2599168	2599169	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NDC80	NM_006101	exon12	c.1371_1372del	p.457_458del	.	.	63.0	13.0	59.0	0.0	.	62	.	.	Atlas-INDEL
PKN3	29941	hgsc.bcm.edu	hg19	9	131480648	131480650	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PKN3	NM_013355	exon17	c.2029_2031del	p.677_677del	.	.	71.0	11.0	100.0	0.0	.	62	.	.	Atlas-INDEL
CDC14A	8556	hgsc.bcm.edu	hg19	1	100889837	100889837	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.,1	CDC14A	NM_033313	exon5	c.368delA	p.N123fs	.	.	105.0	40.0	119.0	0.0	.	65	.	.	Atlas-INDEL
AIM2	9447	hgsc.bcm.edu	hg19	1	159033322	159033322	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	AIM2	NM_004833	exon5	c.960delT	p.N320fs	.	.	115.0	37.0	92.0	0.0	.	70	.	.	Atlas-INDEL
USH2A	7399	hgsc.bcm.edu	hg19	1	216062118	216062118	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	USH2A	NM_206933	exon41	c.7874delA	p.E2625fs	.	.	170.0	27.0	114.0	0.0	.	1168	.	.	Atlas-INDEL
CDC42EP1	11135	hgsc.bcm.edu	hg19	22	37962638	37962639	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.,1	CDC42EP1	NM_152243	exon2	c.282_283insC	p.A94fs	.	.	166.0	42.0	194.0	0.0	.	53	.	.	Atlas-INDEL
BEX4	56271	hgsc.bcm.edu	hg19	X	102471235	102471236	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BEX4	NM_001080425	exon3	c.154_155insG	p.R52fs	.	.	396.0	52.0	349.0	0.0	.	15	.	.	Atlas-INDEL
ADAMTSL1	92949	hgsc.bcm.edu	hg19	9	18777687	18777687	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ADAMTSL1	NM_001040272	exon19	c.3459delC	p.A1153fs	.	.	69.0	18.0	89.0	0.0	.	306	.	.	Atlas-INDEL
C11orf57	55216	hgsc.bcm.edu	hg19	11	111953315	111953316	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.,1	C11orf57	NM_001082969	exon6	c.501_502insA	p.H167fs	.	.	361.0	86.0	309.0	0.0	.	41	.	.	Atlas-INDEL
FGFR2	2263	hgsc.bcm.edu	hg19	10	123310909	123310929	+	In_Frame_Del	DEL	GTTGGCCGCAGGCACAGCATG	GTTGGCCGCAGGCACAGCATG	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	GTTGGCCGCAGGCACAGCATG	GTTGGCCGCAGGCACAGCATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	FGFR2	NM_000141	exon5	c.500_520del	p.167_174del	.	.	57.0	12.0	98.0	0.0	.	758	.	.	Atlas-INDEL
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247024553	247024553	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	AHCTF1	NM_015446	exon29	c.3808delT	p.C1270fs	.	.	287.0	30.0	211.0	0.0	.	187	.	.	Atlas-INDEL
BOP1	23246	hgsc.bcm.edu	hg19	8	145512978	145512979	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	BOP1	NM_015201	exon2	c.107_108insC	p.L36fs	.	.	107.0	18.0	56.0	0.0	.	7	.	.	Atlas-INDEL
NES	10763	hgsc.bcm.edu	hg19	1	156642804	156642804	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NES	NM_006617	exon4	c.1177delA	p.T393fs	.	.	122.0	37.0	76.0	0.0	.	196	.	.	Atlas-INDEL
MPHOSPH10	10199	hgsc.bcm.edu	hg19	2	71377061	71377061	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	MPHOSPH10	NM_005791	exon11	c.1961delT	p.V654fs	.	.	381.0	119.0	458.0	0.0	.	81	.	.	Atlas-INDEL
ZNF292	23036	hgsc.bcm.edu	hg19	6	87966812	87966812	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF292	NM_015021	exon8	c.3464delA	p.Y1155fs	.	.	68.0	34.0	59.0	0.0	.	479	.	.	Atlas-INDEL
STAG1	10274	hgsc.bcm.edu	hg19	3	136240141	136240143	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	STAG1	NM_005862	exon7	c.589_591del	p.197_197del	.	.	247.0	30.0	272.0	0.0	.	135	.	.	Atlas-INDEL
OBSL1	23363	hgsc.bcm.edu	hg19	2	220435528	220435528	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	OBSL1	NM_001173431	exon1	c.428delC	p.A143fs	.	.	402.0	61.0	354.0	0.0	.	120	.	.	Atlas-INDEL
IARS2	55699	hgsc.bcm.edu	hg19	1	220273982	220273985	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	IARS2	NM_018060	exon3	c.540_543del	p.180_181del	.	.	329.0	24.0	224.0	0.0	.	106	.	.	Atlas-INDEL
PLAC1L	219990	hgsc.bcm.edu	hg19	11	59814440	59814440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	PLAC1L	NM_173801	exon4	c.370delG	p.V124fs	.	.	138.0	37.0	110.0	0.0	.	36	.	.	Atlas-INDEL
ZNF480	147657	hgsc.bcm.edu	hg19	19	52825303	52825303	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZNF480	NM_144684	exon5	c.799delG	p.V267fs	.	.	114.0	11.0	114.0	0.0	.	123	.	.	Atlas-INDEL
LRP1	4035	hgsc.bcm.edu	hg19	12	57605934	57605934	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LRP1	NM_002332	exon88	c.13383delC	p.N4461fs	.	.	152.0	17.0	181.0	0.0	.	428	.	.	Atlas-INDEL
C9orf129	445577	hgsc.bcm.edu	hg19	9	96080811	96080812	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	C9orf129	NM_001098808	exon5	c.460_461insG	p.H154fs	.	.	124.0	20.0	88.0	0.0	.	18	.	.	Atlas-INDEL
GAB2	9846	hgsc.bcm.edu	hg19	11	77934490	77934490	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GAB2	NM_080491	exon6	c.1536delT	p.P512fs	.	.	169.0	22.0	154.0	0.0	.	63	.	.	Atlas-INDEL
CLK1	1195	hgsc.bcm.edu	hg19	2	201722550	201722550	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CLK1	NM_001162407	exon7	c.850delG	p.E284fs	.	.	119.0	24.0	146.0	0.0	.	103	.	.	Atlas-INDEL
CAPN7	23473	hgsc.bcm.edu	hg19	3	15282001	15282001	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	CAPN7	NM_014296	exon13	c.1428delG	p.L476fs	.	.	139.0	10.0	93.0	0.0	.	63	.	.	Atlas-INDEL
LAMA1	284217	hgsc.bcm.edu	hg19	18	6942222	6942222	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	LAMA1	NM_005559	exon63	c.9085delT	p.C3029fs	.	.	55.0	10.0	42.0	0.0	.	458	.	.	Atlas-INDEL
ELMSAN1	91748	hgsc.bcm.edu	hg19	14	74205773	74205773	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	.	NM_194278	exon2	c.940delA	p.N314fs	.	.	45.0	18.0	47.0	0.0	.	.	.	.	Atlas-INDEL
HLCS	3141	hgsc.bcm.edu	hg19	21	38128905	38128906	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HLCS	NM_000411	exon11	c.1947_1948del	p.649_650del	.	.	173.0	59.0	196.0	0.0	.	64	.	.	Atlas-INDEL
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38121789	38121789	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	TRIOBP_ENST00000344404,NS,carcinoma,0,3	TRIOBP	NM_001039141	exon7	c.3225delG	p.S1075fs	.	.	87.0	14.0	95.0	0.0	.	262	.	.	Atlas-INDEL
SLC27A3	11000	hgsc.bcm.edu	hg19	1	153747867	153747869	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SLC27A3	NM_024330	exon1	c.34_36del	p.12_12del	.	.	75.0	11.0	60.0	0.0	.	42	.	.	Atlas-INDEL
ACADL	33	hgsc.bcm.edu	hg19	2	211081128	211081129	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ACADL	NM_001608	exon4	c.479_480insC	p.Q160fs	.	.	93.0	12.0	95.0	0.0	.	38	.	.	Atlas-INDEL
ARFGAP1	55738	hgsc.bcm.edu	hg19	20	61917759	61917760	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.,1	ARFGAP1	NM_175609	exon13	c.900_901insT	p.T300fs	.	.	113.0	24.0	105.0	0.0	.	38	.	.	Atlas-INDEL
NFASC	23114	hgsc.bcm.edu	hg19	1	204924033	204924033	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NFASC	NM_001005388	exon7	c.488delA	p.N163fs	.	.	134.0	30.0	110.0	0.0	.	396	.	.	Atlas-INDEL
RICTOR	253260	hgsc.bcm.edu	hg19	5	38958624	38958624	+	Splice_Site	DEL	A	A	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	RICTOR	NM_152756	exon25	c.2344-2T>-	.	.	.	340.0	102.0	317.0	0.0	.	182	.	.	Atlas-INDEL
ZEB1	6935	hgsc.bcm.edu	hg19	10	31809832	31809833	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ZEB1	NM_001174096	exon7	c.1572_1573insG	p.E524fs	.	.	108.0	11.0	100.0	0.0	.	173	.	.	Atlas-INDEL
SDC2	6383	hgsc.bcm.edu	hg19	8	97621775	97621775	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SDC2	NM_002998	exon5	c.604delT	p.X202K	.	.	86.0	14.0	69.0	0.0	.	33	.	.	Atlas-INDEL
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9255558	9255559	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ANKRD12	NM_015208	exon9	c.2293_2294insA	p.E765fs	.	.	123.0	49.0	103.0	0.0	.	167	.	.	Atlas-INDEL
ELF3	1999	hgsc.bcm.edu	hg19	1	201982384	201982385	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ELF3	NM_001114309	exon7	c.762_763del	p.254_255del	.	.	302.0	30.0	231.0	0.0	.	92	.	.	Atlas-INDEL
ZNF142	7701	hgsc.bcm.edu	hg19	2	219508083	219508084	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.,2	ZNF142	NM_001105537	exon8	c.3156_3157insG	p.G1052fs	.	.	140.0	26.0	143.0	0.0	.	190	.	.	Atlas-INDEL
GBP3	2635	hgsc.bcm.edu	hg19	1	89476691	89476693	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	GBP3	NM_018284	exon8	c.1257_1259del	p.419_420del	.	.	145.0	69.0	89.0	0.0	.	53	.	.	Atlas-INDEL
SPATC1	375686	hgsc.bcm.edu	hg19	8	145095783	145095784	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	SPATC1_ENST00000377470,NS,carcinoma,0,2	SPATC1	NM_001134374	exon3	c.1081_1082insC	p.A361fs	.	.	114.0	24.0	81.0	0.0	.	77	.	.	Atlas-INDEL
SLC8A1	6546	hgsc.bcm.edu	hg19	2	40656189	40656191	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	SLC8A1	NM_001112802	exon2	c.1231_1233del	p.411_411del	.	.	101.0	12.0	95.0	0.0	.	221	.	.	Atlas-INDEL
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12124209	12124209	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	HIVEP1	NM_002114	exon4	c.4180delA	p.T1394fs	.	.	141.0	25.0	119.0	0.0	.	242	.	.	Atlas-INDEL
DNAH6	1768	hgsc.bcm.edu	hg19	2	84806683	84806684	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	DNAH6	NM_001370	exon14	c.2109_2110insA	p.K703fs	.	.	82.0	20.0	75.0	0.0	.	194	.	.	Atlas-INDEL
NHLRC2	374354	hgsc.bcm.edu	hg19	10	115663496	115663499	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	GTAA	GTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	NHLRC2	NM_198514	exon9	c.1704_1704del	p.568_568del	.	.	288.0	34.0	334.0	0.0	.	56	.	.	Atlas-INDEL
ULK1	8408	hgsc.bcm.edu	hg19	12	132402065	132402066	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ULK1	NM_003565	exon22	c.2292_2293insC	p.T764fs	.	.	222.0	40.0	215.0	0.0	.	92	.	.	Atlas-INDEL
ANK3	288	hgsc.bcm.edu	hg19	10	61828444	61828444	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-WQ-A9G7-01A-11D-A36X-10	TCGA-WQ-A9G7-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9b21e6c1-c220-41e9-b999-323e7bd7079a	60cdfad5-5cd4-4b7e-964b-b6e042e046da	.	ANK3	NM_020987	exon37	c.12196delT	p.S4066fs	.	.	76.0	17.0	70.0	0.0	.	703	.	.	Atlas-INDEL
