Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
COL16A1	1307	hgsc.bcm.edu	hg19	1	32157042	32157042	+	Silent	SNP	A	A	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	COL16A1	NM_001856	exon19	c.T1374C	p.P458P	TATCCCAGGGGGT	.	138.0	48.0	191.0	0.0	.	137	.	.	Atlas-SNP
IFI44L	10964	hgsc.bcm.edu	hg19	1	79107135	79107135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	IFI44L	NM_006820	exon8	c.A1165G	p.K389E	GTCCATAAAATGC	.	111.0	6.0	98.0	0.0	.	93	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103455118	103455118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	COL11A1	NM_080629	exon29	c.G2386T	p.G796C	GAAAACCATCTTC	.	596.0	176.0	576.0	1.0	.	972	.	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108138911	108138911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	VAV3,NS,carcinoma,0,1	VAV3	NM_006113	exon25	c.T2273C	p.L758S	GTATCTAAGGTTC	.	109.0	42.0	103.0	0.0	.	176	.	.	Atlas-SNP
BCAN	63827	hgsc.bcm.edu	hg19	1	156616814	156616814	+	Missense_Mutation	SNP	C	C	T	rs115373136	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	BCAN	NM_198427	exon3	c.C313T	p.R105W	GCCTACCGGTTCC	.	153.0	45.0	192.0	0.0	.	174	.	C|0.989;G|0.011	Atlas-SNP
CNTN2	6900	hgsc.bcm.edu	hg19	1	205036323	205036323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	CNTN2	NM_005076	exon16	c.T2070G	p.I690M	CAACATTCTGGGC	.	234.0	17.0	231.0	0.0	.	116	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179433556	179433556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	TTN	NM_001267550	exon326	c.T77303G	p.L25768R	CTAAAAAGATATT	.	98.0	10.0	71.0	0.0	.	18412	.	.	Atlas-SNP
ALPPL2	251	hgsc.bcm.edu	hg19	2	233274402	233274402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	ALPPL2	NM_031313	exon11	c.G1419T	p.E473D	GCAGGAGCAGACC	.	146.0	8.0	184.0	0.0	.	36	.	.	Atlas-SNP
BRPF1	7862	hgsc.bcm.edu	hg19	3	9781391	9781391	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	BRPF1	NM_001003694	exon3	c.C1308G	p.F436L	CTCTTTCAGTGTC	.	173.0	10.0	173.0	0.0	.	104	.	.	Atlas-SNP
TRA2B	6434	hgsc.bcm.edu	hg19	3	185644397	185644397	+	Silent	SNP	A	A	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	TRA2B	NM_004593	exon2	c.T162A	p.S54S	AGATTCAGATCGG	.	92.0	9.0	91.0	0.0	.	36	.	.	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57180592	57180592	+	Silent	SNP	T	T	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	KIAA1211,NS,carcinoma,+2,2	KIAA1211	NM_020722	exon8	c.T924G	p.R308R	GGAGCGTGAGGAG	.	130.0	31.0	136.0	0.0	.	178	.	.	Atlas-SNP
AMBN	258	hgsc.bcm.edu	hg19	4	71467282	71467282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	AMBN	NM_016519	exon6	c.A442G	p.I148V	CCTCCAATTCACC	.	104.0	6.0	111.0	0.0	.	73	.	.	Atlas-SNP
ABLIM3	22885	hgsc.bcm.edu	hg19	5	148617156	148617156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	ABLIM3	NM_014945	exon11	c.G1034A	p.G345D	GATGTGGCTATGG	.	105.0	11.0	113.0	0.0	.	91	.	.	Atlas-SNP
TXNDC5	81567	hgsc.bcm.edu	hg19	6	7899894	7899894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	TXNDC5	NM_030810	exon3	c.G434T	p.G145V	TCTTGGCCTGGCT	.	78.0	17.0	68.0	0.0	.	33	.	.	Atlas-SNP
ZNF318	24149	hgsc.bcm.edu	hg19	6	43305119	43305119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	ZNF318	NM_014345	exon10	c.G6617A	p.G2206E	AATGGCCCCAACT	.	91.0	8.0	100.0	0.0	.	175	.	.	Atlas-SNP
AMD1	262	hgsc.bcm.edu	hg19	6	111196314	111196314	+	Silent	SNP	A	A	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	AMD1	NM_001634	exon1	c.A6G	p.E2E	GATGGAAGCTGCA	.	63.0	9.0	47.0	0.0	.	23	.	.	Atlas-SNP
MED23	9439	hgsc.bcm.edu	hg19	6	131941772	131941772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	MED23	NM_015979	exon7	c.A593G	p.H198R	ACCCAGTGTGGAA	.	252.0	32.0	252.0	0.0	.	112	.	.	Atlas-SNP
CREB5	9586	hgsc.bcm.edu	hg19	7	28547252	28547252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	CREB5	NM_182898	exon4	c.C188T	p.T63M	CCCCAACGAGATT	.	151.0	11.0	106.0	0.0	.	115	.	.	Atlas-SNP
ZNF727	442319	hgsc.bcm.edu	hg19	7	63537704	63537704	+	Missense_Mutation	SNP	G	G	T	rs375815259	alternate_allele	TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	ZNF727	NM_001159522	exon4	c.G277T	p.D93Y	ATAAACGATTCAT	.	188.0	19.0	151.0	0.0	.	35	.	.	Atlas-SNP
AKR1B1	231	hgsc.bcm.edu	hg19	7	134136358	134136358	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	AKR1B1,NS,carcinoma,0,1	AKR1B1	NM_001628	exon2	c.G214T	p.E72X	AGAGCTCCTCACG	.	111.0	44.0	51.0	0.0	.	32	.	.	Atlas-SNP
WRN	7486	hgsc.bcm.edu	hg19	8	30974005	30974005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	WRN	NM_000553	exon20	c.G2409T	p.R803S	CACAAGGAAAGAC	.	79.0	14.0	63.0	0.0	.	116	.	.	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	hg19	8	41812897	41812897	+	Silent	SNP	T	T	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	.	NM_001099412	exon10	c.A1515G	p.Q505Q	GCGGACTTGTGGA	.	108.0	13.0	94.0	0.0	.	.	.	.	Atlas-SNP
DBH	1621	hgsc.bcm.edu	hg19	9	136501520	136501520	+	Silent	SNP	C	C	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	DBH,NS,carcinoma,0,1	DBH	NM_000787	exon1	c.C27T	p.S9S	GGCCAGCCTGCCC	.	229.0	16.0	281.0	0.0	.	86	.	.	Atlas-SNP
WDR37	22884	hgsc.bcm.edu	hg19	10	1118109	1118109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	WDR37	NM_014023	exon2	c.G14C	p.S5T	CAGAAAGCGCAAG	.	107.0	8.0	112.0	0.0	.	52	.	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25888075	25888075	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	GPR158	NM_020752	exon11	c.T3520A	p.W1174R	TGTCCTTGGGAGT	.	36.0	16.0	31.0	0.0	.	255	.	.	Atlas-SNP
VSTM4	196740	hgsc.bcm.edu	hg19	10	50285295	50285295	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	VSTM4	NM_001031746	exon4	c.G603A	p.W201X	AGACTGCCAGACG	.	75.0	4.0	74.0	0.0	.	83	.	.	Atlas-SNP
KIAA1279	26128	hgsc.bcm.edu	hg19	10	70775761	70775761	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	KIAA1279	NM_015634	exon7	c.G1455C	p.M485I	TATGATGGATTTG	.	116.0	6.0	139.0	0.0	.	35	.	.	Atlas-SNP
C10orf12	26148	hgsc.bcm.edu	hg19	10	98741959	98741959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	C10orf12	NM_015652	exon1	c.A812G	p.D271G	GTGGAGACGTTTC	.	125.0	7.0	130.0	0.0	.	94	.	.	Atlas-SNP
PNLIPRP1	5407	hgsc.bcm.edu	hg19	10	118351992	118351992	+	Missense_Mutation	SNP	G	G	T	rs141478509	bycluster;alternate_allele	TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	PNLIPRP1	NM_006229	exon4	c.G269T	p.R90L	AGACCCGGTTCAT	.	90.0	22.0	96.0	0.0	.	82	.	G|1.000;A|0.000	Atlas-SNP
CPSF7	79869	hgsc.bcm.edu	hg19	11	61183611	61183611	+	Missense_Mutation	SNP	T	T	C	rs143271041		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	CPSF7	NM_024811	exon6	c.A1060G	p.M354V	CCTTCATGTAAGT	.	62.0	10.0	91.0	0.0	.	46	.	T|1.000;C|0.000	Atlas-SNP
CARNS1	57571	hgsc.bcm.edu	hg19	11	67191670	67191670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	CARNS1	NM_001166222	exon10	c.G2451A	p.M817I	CCGCATGGGTGGC	.	114.0	31.0	156.0	0.0	.	60	.	.	Atlas-SNP
TYR	7299	hgsc.bcm.edu	hg19	11	88924399	88924399	+	Silent	SNP	C	C	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	TYR	NM_000372	exon2	c.C849T	p.N283N	GTACAACAGCCAT	.	167.0	55.0	141.0	0.0	.	130	.	.	Atlas-SNP
SNX19	399979	hgsc.bcm.edu	hg19	11	130773191	130773191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	SNX19	NM_014758	exon8	c.G2532T	p.M844I	CTTTTGCATGTTT	.	123.0	5.0	129.0	0.0	.	84	.	.	Atlas-SNP
CS	1431	hgsc.bcm.edu	hg19	12	56667010	56667010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	CS	NM_004077	exon11	c.A1259G	p.Y420C	ACCGTGTAGTAAT	.	152.0	34.0	174.0	0.0	.	44	.	.	Atlas-SNP
N4BP2L2	10443	hgsc.bcm.edu	hg19	13	33109968	33109968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	N4BP2L2	NM_014887	exon2	c.A1197T	p.K399N	CTGCAATTTATTT	.	92.0	5.0	90.0	0.0	.	90	.	.	Atlas-SNP
SPG20	23111	hgsc.bcm.edu	hg19	13	36905735	36905735	+	Splice_Site	SNP	T	T	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	SPG20	NM_015087	exon4	c.811-2A>G	.	CAAACCTGAAAGG	.	92.0	30.0	83.0	0.0	.	87	.	.	Atlas-SNP
POSTN	10631	hgsc.bcm.edu	hg19	13	38153242	38153242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	POSTN	NM_006475	exon14	c.T1808C	p.L603P	TTCACCAGAAGTG	.	154.0	21.0	107.0	0.0	.	161	.	.	Atlas-SNP
COL4A2	1284	hgsc.bcm.edu	hg19	13	111125290	111125290	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	COL4A2	NM_001846	exon29	c.C2218T	p.R740X	GGACCCCGAGGAT	.	198.0	14.0	207.0	0.0	.	178	.	.	Atlas-SNP
PSMC6	5706	hgsc.bcm.edu	hg19	14	53175062	53175062	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	PSMC6	NM_002806	exon2	c.G163T	p.E55X	CAGTATGAAAAGT	.	132.0	42.0	147.0	0.0	.	71	.	.	Atlas-SNP
GCNT3	9245	hgsc.bcm.edu	hg19	15	59911450	59911450	+	Missense_Mutation	SNP	G	G	A	rs142393489	alternate_allele	TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	GCNT3,NS,carcinoma,+1,1	GCNT3	NM_004751	exon3	c.G1013A	p.R338H	TTCAGCGTGCACG	.	135.0	7.0	109.0	0.0	.	42	.	G|1.000;C|0.000	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	hg19	16	2025894	2025894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	TBL3	NM_006453	exon11	c.G1073T	p.C358F	GCCCCTGCCTAAA	.	113.0	18.0	209.0	0.0	.	54	.	.	Atlas-SNP
TBL3	10607	hgsc.bcm.edu	hg19	16	2025898	2025898	+	Silent	SNP	A	A	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	TBL3	NM_006453	exon11	c.A1077G	p.L359L	CTGCCTAAAAGTG	.	120.0	20.0	208.0	0.0	.	54	.	.	Atlas-SNP
MT1H	4496	hgsc.bcm.edu	hg19	16	56704900	56704900	+	Silent	SNP	G	G	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	MT1H	NM_005951	exon3	c.G185A	p.X62X	GTGCCTGATGTCG	.	44.0	8.0	62.0	0.0	.	19	.	.	Atlas-SNP
VPS9D1	9605	hgsc.bcm.edu	hg19	16	89783145	89783145	+	Silent	SNP	G	G	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	.	NM_004913	exon3	c.C261A	p.A87A	AAGCTTGGCGGCC	.	82.0	4.0	89.0	0.0	.	.	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11515011	11515011	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	DNAH9	NM_001372	exon4	c.C818G	p.T273R	CAATAACGGTGAG	.	127.0	10.0	139.0	0.0	.	695	.	.	Atlas-SNP
SEPT4	5414	hgsc.bcm.edu	hg19	17	56604304	56604304	+	Silent	SNP	T	T	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	SEPT4	NM_001256782	exon3	c.A141T	p.G47G	CAGTTCTCCATCA	.	57.0	14.0	82.0	0.0	.	48	.	.	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57724931	57724931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	CLTC	NM_004859	exon3	c.G423A	p.M141I	GAAAATGTTTGAT	.	186.0	13.0	168.0	0.0	.	124	.	.	Atlas-SNP
CEP112	201134	hgsc.bcm.edu	hg19	17	64128831	64128831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	CEP112	NM_001199165	exon5	c.C521A	p.P174Q	TGAGTTGGACTCA	.	112.0	5.0	89.0	0.0	.	192	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65916145	65916145	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	BPTF	NM_004459	exon15	c.G5821T	p.E1941X	GAAACTGAAATCA	.	82.0	4.0	93.0	0.0	.	415	.	.	Atlas-SNP
ELAC1	55520	hgsc.bcm.edu	hg19	18	48510826	48510826	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	ELAC1,colon,carcinoma,0,1	ELAC1	NM_018696	exon3	c.T518G	p.F173C	AACAATTTGTTGT	.	138.0	14.0	113.0	0.0	.	17	.	.	Atlas-SNP
SERPINB3	6317	hgsc.bcm.edu	hg19	18	61323171	61323171	+	Missense_Mutation	SNP	G	G	A	rs377088096		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	SERPINB3,NS,carcinoma,0,1	SERPINB3	NM_006919	exon8	c.C893T	p.T298M	CTCAACGTGTCCT	.	147.0	24.0	114.0	0.0	.	90	.	.	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72344756	72344756	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	ZNF407	NM_001146190	exon1	c.C1781G	p.S594X	GTTGTTCATTTAT	.	117.0	7.0	110.0	0.0	.	231	.	.	Atlas-SNP
DPF1	8193	hgsc.bcm.edu	hg19	19	38713312	38713312	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	DPF1	NM_001135155	exon2	c.C147G	p.H49Q	GCGGCAGTGCTCG	.	121.0	23.0	164.0	0.0	.	54	.	.	Atlas-SNP
EID2B	126272	hgsc.bcm.edu	hg19	19	40023135	40023135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	EID2B	NM_152361	exon1	c.G308T	p.S103I	ATGGAGCTACCAT	.	324.0	30.0	350.0	0.0	.	9	.	.	Atlas-SNP
PANK2	80025	hgsc.bcm.edu	hg19	20	3897669	3897669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	PANK2	NM_153638	exon5	c.C1508T	p.S503L	TTGGCTCAATAGC	.	133.0	25.0	166.0	0.0	.	37	.	.	Atlas-SNP
TCFL5	10732	hgsc.bcm.edu	hg19	20	61491546	61491546	+	Silent	SNP	T	T	C	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	TCFL5	NM_006602	exon2	c.A762G	p.Q254Q	TGTAAATTGCAAA	.	130.0	23.0	163.0	0.0	.	43	.	.	Atlas-SNP
AP1B1	162	hgsc.bcm.edu	hg19	22	29727788	29727788	+	Silent	SNP	C	C	G	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	AP1B1	NM_001127	exon18	c.G2427C	p.L809L	GTTGTTCAGAGGC	.	94.0	12.0	143.0	0.0	.	72	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	7326	7326	+	Missense_Mutation	SNP	G	G	A	rs3884237		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	.	ENST00000361624	exon1	c.G1423A	p.A475T	TGAGAAGCCTTCG	.	81.0	7.0	13.0	0.0	.	.	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12730	12730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	.	ENST00000361567	exon1	c.G394A	p.V132I	ATCTTAGTTACCG	.	105.0	17.0	15.0	0.0	.	.	.	.	Atlas-SNP
PPP2R5C	5527	hgsc.bcm.edu	hg19	14	102356589	102356590	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-WX-AA46-01A-11D-A38X-10	TCGA-WX-AA46-10A-01D-A38X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c32ea52-9c54-4776-ac95-a5a2a4a6d084	3ca4659e-8911-4dee-b019-29b5cf9bc842	.	PPP2R5C	NM_001161726	exon8	c.809_810del	p.270_270del	.	.	115.0	27.0	137.0	0.0	.	74	.	.	Atlas-INDEL
