Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CSMD2	114784	hgsc.bcm.edu	hg19	1	34209061	34209061	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	CSMD2,caecum,carcinoma,0,1	CSMD2	NM_052896	exon14	c.G1873C	p.V625L	GCTCCACGTCAAT	.	71.0	23.0	60.0	0.0	.	946	.	.	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	hg19	1	86200503	86200503	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	COL24A1	NM_152890	exon59	c.A4927T	p.K1643X	ATCCCTTGAAACC	.	200.0	77.0	187.0	0.0	.	202	.	.	Atlas-SNP
ANKRD35	148741	hgsc.bcm.edu	hg19	1	145562472	145562472	+	Silent	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	ANKRD35	NM_144698	exon10	c.C2160T	p.S720S	ACAAAGCAAAGCA	.	185.0	52.0	163.0	0.0	.	96	.	.	Atlas-SNP
YY1AP1	55249	hgsc.bcm.edu	hg19	1	155640243	155640243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	YY1AP1	NM_001198904	exon7	c.C1010G	p.P337R	AAACAGGGAAATT	.	148.0	41.0	124.0	0.0	.	104	.	.	Atlas-SNP
KIAA1804	0	hgsc.bcm.edu	hg19	1	233489695	233489695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	KIAA1804	NM_032435	exon3	c.A1129G	p.M377V	AAGCTCATGAAAG	.	127.0	75.0	90.0	0.0	.	129	.	.	Atlas-SNP
CCDC121	79635	hgsc.bcm.edu	hg19	2	27849931	27849931	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CCDC121	NM_001142683	exon2	c.A1222T	p.R408X	GCAGTCTCTGCCT	.	75.0	34.0	87.0	0.0	.	43	.	.	Atlas-SNP
CLK1	1195	hgsc.bcm.edu	hg19	2	201726515	201726515	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CLK1	NM_001162407	exon2	c.G197C	p.S66T	CTGCTGCTCCTCC	.	86.0	38.0	107.0	0.0	.	103	.	.	Atlas-SNP
ATG9A	79065	hgsc.bcm.edu	hg19	2	220087067	220087067	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	ATG9A	NM_001077198	exon12	c.C1954G	p.L652V	AGCGCAGGGCAGA	.	107.0	31.0	143.0	0.0	.	50	.	.	Atlas-SNP
SCN10A	6336	hgsc.bcm.edu	hg19	3	38797307	38797307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	SCN10A,colon,carcinoma,0,2	SCN10A	NM_006514	exon10	c.G1433T	p.R478L	TCAGAGCGGGGTG	.	102.0	41.0	107.0	1.0	.	359	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	146.0	68.0	119.0	0.0	.	4904	.	.	Atlas-SNP
TTC14	151613	hgsc.bcm.edu	hg19	3	180328329	180328329	+	Silent	SNP	A	A	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	TTC14	NM_133462	exon12	c.A2312G	p.X771X	AAAATTAATACAC	.	129.0	64.0	139.0	0.0	.	112	.	.	Atlas-SNP
LRRC33	375387	hgsc.bcm.edu	hg19	3	196387632	196387632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	LRRC33	NM_198565	exon3	c.A1118G	p.E373G	AGCACGAGCCCCC	.	69.0	32.0	77.0	0.0	.	91	.	.	Atlas-SNP
SENP5	205564	hgsc.bcm.edu	hg19	3	196612404	196612404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	SENP5	NM_152699	exon2	c.A352G	p.K118E	GCAGAGAAGCTGT	.	86.0	31.0	108.0	0.0	.	68	.	.	Atlas-SNP
CWH43	80157	hgsc.bcm.edu	hg19	4	49005762	49005762	+	Silent	SNP	A	A	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CWH43	NM_025087	exon7	c.A813G	p.S271S	AGCTTCAGCTGCG	.	70.0	32.0	80.0	0.0	.	101	.	.	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104065618	104065618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CENPE	NM_001813	exon33	c.A5015G	p.Q1672R	AGTATCTGAGTCA	.	109.0	44.0	77.0	0.0	.	253	.	.	Atlas-SNP
SGTB	54557	hgsc.bcm.edu	hg19	5	64976566	64976566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	SGTB	NM_019072	exon7	c.G535A	p.A179T	CTAATGCCTTTTG	.	121.0	9.0	98.0	0.0	.	22	.	.	Atlas-SNP
ARL10	285598	hgsc.bcm.edu	hg19	5	175798739	175798739	+	Silent	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	ARL10	NM_173664	exon4	c.C576T	p.A192A	CGAGGCCATGAGT	.	157.0	8.0	115.0	0.0	.	19	.	.	Atlas-SNP
RXRB	6257	hgsc.bcm.edu	hg19	6	33162491	33162491	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	RXRB	NM_001270401	exon10	c.G1582T	p.E528X	GCATCTCCATGAG	.	66.0	34.0	87.0	0.0	.	34	.	.	Atlas-SNP
ANKRD66	100287718	hgsc.bcm.edu	hg19	6	46721610	46721610	+	Silent	SNP	C	C	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	.	NM_001162435	exon4	c.C480A	p.A160A	CGACGCCCCTGAC	.	119.0	39.0	123.0	0.0	.	.	.	.	Atlas-SNP
FZD1	8321	hgsc.bcm.edu	hg19	7	90895843	90895843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	FZD1	NM_003505	exon1	c.A1648G	p.I550V	GCCACCATCGTCA	.	48.0	23.0	58.0	0.0	.	64	.	.	Atlas-SNP
MYC	4609	hgsc.bcm.edu	hg19	8	128750607	128750607	+	Missense_Mutation	SNP	G	G	C	rs61752959	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	MYC,trunk,malignant_melanoma,0,1	MYC	NM_002467	exon2	c.G144C	p.Q48H	CTACCAGCAGCAG	.	87.0	4.0	88.0	1.0	.	168	.	G|0.985;A|0.015	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	713335	713335	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	KANK1	NM_001256876	exon7	c.T2569G	p.S857A	CCTCACTCACAGA	.	106.0	39.0	111.0	0.0	.	231	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37746177	37746177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	FRMPD1	NM_014907	exon16	c.C4148A	p.A1383D	GGCCTGCCCGAGC	.	54.0	25.0	80.0	0.0	.	237	.	.	Atlas-SNP
CDK9	1025	hgsc.bcm.edu	hg19	9	130550509	130550509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CDK9	NM_001261	exon5	c.T449C	p.M150T	GGGACATGAAGGC	.	64.0	23.0	83.0	0.0	.	22	.	.	Atlas-SNP
RPS13	6207	hgsc.bcm.edu	hg19	11	17099170	17099170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	RPS13,NS,carcinoma,+2,1	RPS13	NM_001017	exon1	c.C19T	p.P7S	ACCCGGGAGCATG	.	235.0	110.0	258.0	0.0	.	14	.	.	Atlas-SNP
ZNF202	7753	hgsc.bcm.edu	hg19	11	123598282	123598282	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	ZNF202	NM_003455	exon8	c.A854T	p.D285V	ATCTCATCAGGTC	.	57.0	26.0	57.0	0.0	.	72	.	.	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18937327	18937327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	SMG1	NM_015092	exon1	c.G37A	p.G13S	CGCCGCCGCTGCT	.	92.0	5.0	78.0	0.0	.	401	.	.	Atlas-SNP
ZNF267	10308	hgsc.bcm.edu	hg19	16	31896500	31896500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	ZNF267	NM_003414	exon3	c.C149T	p.P50L	CTAAGCCGGACCT	.	105.0	7.0	127.0	0.0	.	94	.	.	Atlas-SNP
ZFP90	146198	hgsc.bcm.edu	hg19	16	68598406	68598406	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	ZFP90	NM_133458	exon4	c.G1716C	p.E572D	GCATGAGAGAACT	.	124.0	48.0	151.0	0.0	.	67	.	.	Atlas-SNP
GSG2	83903	hgsc.bcm.edu	hg19	17	3629472	3629472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	GSG2	NM_031965	exon1	c.T2243C	p.L748P	ATTACCTGACAGA	.	100.0	4.0	122.0	0.0	.	48	.	.	Atlas-SNP
CCDC144NL	339184	hgsc.bcm.edu	hg19	17	20768818	20768818	+	Silent	SNP	A	A	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CCDC144NL	NM_001004306	exon4	c.T576C	p.Y192Y	ATGACAATACTCT	.	25.0	5.0	19.0	0.0	.	34	.	.	Atlas-SNP
OR1M1	125963	hgsc.bcm.edu	hg19	19	9204711	9204711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	OR1M1	NM_001004456	exon1	c.C791T	p.S264L	CCTCCTCGGTCCT	.	68.0	7.0	76.0	0.0	.	52	.	.	Atlas-SNP
SIX5	147912	hgsc.bcm.edu	hg19	19	46270086	46270086	+	Silent	SNP	G	G	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	SIX5	NM_175875	exon2	c.C1131T	p.A377A	CTCGCTGGCCCCC	.	55.0	20.0	81.0	0.0	.	35	.	.	Atlas-SNP
ZSCAN4	201516	hgsc.bcm.edu	hg19	19	58189641	58189641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	ZSCAN4	NM_152677	exon5	c.G670A	p.E224K	ATCCAGGAAGAGA	.	115.0	51.0	99.0	0.0	.	72	.	.	Atlas-SNP
EDN3	1908	hgsc.bcm.edu	hg19	20	57899428	57899428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	EDN3	NM_207034	exon5	c.C631T	p.H211Y	GACCTCCACCATC	.	127.0	60.0	143.0	0.0	.	83	.	.	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	hg19	22	45937218	45937218	+	Silent	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	FBLN1	NM_006487	exon9	c.C1032T	p.G344G	CCGTGGCTACCAT	.	108.0	40.0	108.0	0.0	.	143	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46930896	46930896	+	Silent	SNP	G	G	A	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CELSR1	NM_014246	exon1	c.C2172T	p.L724L	GCCTGTGAGCTGG	.	33.0	14.0	54.0	0.0	.	242	.	.	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	hg19	22	50718956	50718956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	PLXNB2	NM_012401	exon25	c.G4137C	p.Q1379H	CACGTACTGCTCC	.	54.0	17.0	59.0	0.0	.	172	.	.	Atlas-SNP
KAL1	3730	hgsc.bcm.edu	hg19	X	8504916	8504916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	KAL1	NM_000216	exon11	c.G1517A	p.R506Q	TTTGGCCGTATTG	.	211.0	83.0	217.0	0.0	.	78	.	.	Atlas-SNP
CFP	5199	hgsc.bcm.edu	hg19	X	47483694	47483694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CFP	NM_001145252	exon9	c.C1390A	p.P464T	CCTCAGGGTCTTT	.	147.0	63.0	151.0	0.0	.	43	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11301	11301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	.	ENST00000361381	exon1	c.T542C	p.L181P	TCACTCTCACTGC	.	65.0	5.0	10.0	0.0	.	.	.	.	Atlas-SNP
BMP2K	55589	hgsc.bcm.edu	hg19	4	79792095	79792115	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAACAGCAA	CAGCAGCAGCAGCAACAGCAA	-	rs376418550	alternate_allele	TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	CAGCAGCAGCAGCAACAGCAA	CAGCAGCAGCAGCAACAGCAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	BMP2K	NM_017593	exon11	c.1389_1409del	p.463_470del	.	.	34.0	10.0	27.0	0.0	.	169	.	.	Atlas-INDEL
IL6ST	3572	hgsc.bcm.edu	hg19	5	55260054	55260065	+	In_Frame_Del	DEL	TTGACAAAATAC	TTGACAAAATAC	-	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	TTGACAAAATAC	TTGACAAAATAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.,1	IL6ST	NM_002184	exon6	c.568_579del	p.190_193del	.	.	193.0	73.0	165.0	0.0	.	75	.	.	Atlas-INDEL
STARD8	9754	hgsc.bcm.edu	hg19	X	67938119	67938126	+	Frame_Shift_Del	DEL	TGGGCCCA	TGGGCCCA	-	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	TGGGCCCA	TGGGCCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	STARD8	NM_001142503	exon6	c.1362_1369del	p.454_457del	.	.	175.0	60.0	190.0	0.0	.	282	.	.	Atlas-INDEL
TPP1	1200	hgsc.bcm.edu	hg19	11	6636106	6636107	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	TPP1	NM_000391	exon12	c.1542_1543insG	p.G514fs	.	.	72.0	27.0	97.0	0.0	.	71	.	.	Atlas-INDEL
FARP1	10160	hgsc.bcm.edu	hg19	13	98896955	98896956	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	FARP1	NM_001001715	exon3	c.382_383insT	p.L128fs	.	.	75.0	23.0	84.0	0.0	.	207	.	.	Atlas-INDEL
BASP1	10409	hgsc.bcm.edu	hg19	5	17275402	17275403	+	Frame_Shift_Ins	INS	-	-	CGAGGGCG	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	BASP1	NM_006317	exon2	c.77_78insCGAGGGCG	p.A26fs	.	.	393.0	52.0	327.0	0.0	.	29	.	.	Atlas-INDEL
CDKL4	344387	hgsc.bcm.edu	hg19	2	39452979	39452979	+	Splice_Site	DEL	C	C	-	novel		TCGA-WX-AA47-01A-11D-A38X-10	TCGA-WX-AA47-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dab9728a-5871-4bb0-9ae4-8c6b4885000f	e0c88f8e-49d8-413f-be0d-85b5e3e27b15	.	CDKL4	NM_001009565	exon3	c.290+2G>-	.	.	.	73.0	26.0	59.0	0.0	.	30	.	.	Atlas-INDEL
