Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MAP3K6	9064	hgsc.bcm.edu	hg19	1	27686481	27686481	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MAP3K6	NM_004672	exon17	c.C2187T	p.S729S	GGACAGGCTGCCT	.	69.0	8.0	76.0	0.0	.	134	.	.	Atlas-SNP
PUM1	9698	hgsc.bcm.edu	hg19	1	31414910	31414910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PUM1	NM_001020658	exon19	c.T3055C	p.C1019R	GGAGACAGTGCTC	.	92.0	4.0	119.0	0.0	.	107	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65316572	65316572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	JAK1	NM_002227	exon12	c.C1670T	p.A557V	TTAGTAGCCACCA	.	70.0	11.0	79.0	0.0	.	209	.	.	Atlas-SNP
JAK1	3716	hgsc.bcm.edu	hg19	1	65316573	65316573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	JAK1	NM_002227	exon12	c.G1669T	p.A557S	TAGTAGCCACCAG	.	71.0	11.0	78.0	0.0	.	209	.	.	Atlas-SNP
ELTD1	64123	hgsc.bcm.edu	hg19	1	79387445	79387445	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ELTD1	NM_022159	exon9	c.T1110C	p.C370C	AAATGCACATAGA	.	247.0	88.0	246.0	0.0	.	143	.	.	Atlas-SNP
PDZK1	5174	hgsc.bcm.edu	hg19	1	145748530	145748530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PDZK1	NM_002614	exon4	c.C403G	p.L135V	CCCCGGCTCTGCT	.	522.0	212.0	359.0	0.0	.	15	.	.	Atlas-SNP
DCST2	127579	hgsc.bcm.edu	hg19	1	155003072	155003072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	DCST2	NM_144622	exon6	c.G855A	p.M285I	GGCTGTCATGTTG	.	404.0	67.0	260.0	0.0	.	80	.	.	Atlas-SNP
OR6K6	128371	hgsc.bcm.edu	hg19	1	158725375	158725375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	OR6K6	NM_001005184	exon1	c.C770T	p.S257L	TGCACTCAGCTGA	.	270.0	44.0	155.0	0.0	.	81	.	.	Atlas-SNP
SERTAD4	56256	hgsc.bcm.edu	hg19	1	210414919	210414919	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SERTAD4	NM_019605	exon4	c.A308C	p.E103A	TTTTTGAGGAACG	.	187.0	61.0	126.0	0.0	.	53	.	.	Atlas-SNP
AKT3	10000	hgsc.bcm.edu	hg19	1	244006586	244006586	+	Splice_Site	SNP	T	T	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	AKT3	.	.	.	.	TCAGCCTGGAAGG	.	31.0	9.0	22.0	0.0	.	177	.	.	Atlas-SNP
ZNF670	93474	hgsc.bcm.edu	hg19	1	247201279	247201279	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ZNF670	NM_033213	exon4	c.A642G	p.E214E	TTCATGTTCACGA	.	161.0	27.0	86.0	0.0	.	52	.	.	Atlas-SNP
RTN4	57142	hgsc.bcm.edu	hg19	2	55253876	55253876	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	RTN4	NM_020532	exon3	c.T1359C	p.G453G	CTTTATACCTTCT	.	82.0	27.0	80.0	0.0	.	189	.	.	Atlas-SNP
CCDC85A	114800	hgsc.bcm.edu	hg19	2	56611449	56611449	+	Silent	SNP	A	A	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	CCDC85A	NM_001080433	exon6	c.A1621C	p.R541R	GGAATTAGGCAAC	.	87.0	30.0	86.0	0.0	.	70	.	.	Atlas-SNP
ADD2	119	hgsc.bcm.edu	hg19	2	70910804	70910804	+	Silent	SNP	G	G	A	rs376528363		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	ADD2_ENST00000430656,NS,carcinoma,0,3	ADD2	NM_001185055	exon9	c.C1092T	p.A364A	GCTCCCGGCCCAC	.	210.0	55.0	231.0	0.0	.	261	.	.	Atlas-SNP
CERS6	253782	hgsc.bcm.edu	hg19	2	169626068	169626068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	.	NM_001256126	exon11	c.G1075T	p.D359Y	GAGGAGGACTCAG	.	139.0	39.0	167.0	0.0	.	.	.	.	Atlas-SNP
GORASP2	26003	hgsc.bcm.edu	hg19	2	171822386	171822386	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	GORASP2	NM_015530	exon10	c.C1105G	p.P369A	TCATTCCCCTTGG	.	80.0	33.0	68.0	0.0	.	40	.	.	Atlas-SNP
SPATA3	130560	hgsc.bcm.edu	hg19	2	231861053	231861053	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SPATA3	NM_139073	exon1	c.C105T	p.S35S	TGAATCCACACCA	.	97.0	10.0	111.0	0.0	.	52	.	.	Atlas-SNP
SPATA3	130560	hgsc.bcm.edu	hg19	2	231861054	231861054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SPATA3	NM_139073	exon1	c.A106C	p.T36P	GAATCCACACCAC	.	98.0	16.0	110.0	0.0	.	52	.	.	Atlas-SNP
PASK	23178	hgsc.bcm.edu	hg19	2	242054738	242054738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PASK	NM_015148	exon13	c.A3163G	p.I1055V	ATAGAATTGCGAT	.	122.0	32.0	141.0	0.0	.	230	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	CTNNB1,NS,carcinoma,+1,2	CTNNB1	NM_001098209	exon3	c.C134T	p.S45F	CTCCTTCTCTGAG	.	114.0	35.0	161.0	0.0	.	4904	.	.	Atlas-SNP
TRAK1	22906	hgsc.bcm.edu	hg19	3	42264841	42264841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TRAK1	NM_001042646	exon16	c.A2474G	p.K825R	GAGAAAAGAACGT	.	65.0	5.0	86.0	0.0	.	188	.	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124201708	124201708	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	KALRN	NM_003947	exon28	c.G4239A	p.K1413K	AATTAAGCCTGTC	.	92.0	38.0	152.0	0.0	.	556	.	.	Atlas-SNP
PRR23A	729627	hgsc.bcm.edu	hg19	3	138724705	138724705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PRR23A	NM_001134659	exon1	c.G406A	p.V136I	CAACGACGACGTC	.	198.0	63.0	192.0	0.0	.	35	.	.	Atlas-SNP
PABPC4L	132430	hgsc.bcm.edu	hg19	4	135121098	135121098	+	Silent	SNP	G	G	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PABPC4L	NM_001114734	exon2	c.C1251A	p.S417S	AGGTTTGGAGCCC	.	110.0	33.0	120.0	0.0	.	60	.	.	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	hg19	4	138451883	138451883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PCDH18	NM_019035	exon1	c.C1360A	p.Q454K	TGATTTGAACTGT	.	91.0	27.0	85.0	0.0	.	229	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183658118	183658118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	.	NM_001080477	exon16	c.G3125A	p.G1042E	TAGTAGGAAGACT	.	202.0	11.0	161.0	0.0	.	.	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187628067	187628067	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	FAT1	NM_005245	exon2	c.G2915C	p.G972A	AAGTTTCCTTCTC	.	110.0	6.0	140.0	0.0	.	500	.	.	Atlas-SNP
TRIML2	205860	hgsc.bcm.edu	hg19	4	189022387	189022387	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TRIML2	NM_173553	exon3	c.T153A	p.F51L	CTTTTTAAAATTT	.	74.0	23.0	70.0	0.0	.	80	.	.	Atlas-SNP
FBXL7	23194	hgsc.bcm.edu	hg19	5	15928342	15928342	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	FBXL7	NM_012304	exon3	c.C471T	p.I157I	GACTATCCGCCTG	.	65.0	18.0	92.0	0.0	.	138	.	.	Atlas-SNP
FYB	2533	hgsc.bcm.edu	hg19	5	39141216	39141216	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	FYB	NM_001243093	exon4	c.T1350C	p.D450D	GACACCATCTTGA	.	302.0	99.0	350.0	0.0	.	354	.	.	Atlas-SNP
FCHSD1	89848	hgsc.bcm.edu	hg19	5	141027040	141027040	+	Silent	SNP	G	G	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	FCHSD1	NM_033449	exon9	c.C753G	p.S251S	GCTCAGGGAGGTC	.	121.0	41.0	149.0	0.0	.	51	.	.	Atlas-SNP
SH3RF2	153769	hgsc.bcm.edu	hg19	5	145435595	145435595	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SH3RF2	NM_152550	exon8	c.G1374A	p.W458X	CACATGGACGTTA	.	109.0	46.0	105.0	0.0	.	58	.	.	Atlas-SNP
CLK4	57396	hgsc.bcm.edu	hg19	5	178043943	178043943	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	CLK4	NM_020666	exon5	c.T482G	p.I161S	TCCACGATTTCAT	.	304.0	89.0	313.0	0.0	.	103	.	.	Atlas-SNP
BTN2A2	10385	hgsc.bcm.edu	hg19	6	26388421	26388421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	BTN2A2	NM_001197238	exon4	c.C623T	p.T208I	TGGTCACCACAGC	.	109.0	37.0	110.0	0.0	.	87	.	.	Atlas-SNP
GPR110	266977	hgsc.bcm.edu	hg19	6	46977900	46977900	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	GPR110	NM_153840	exon11	c.T1271G	p.F424C	CGAGAAAAATTCA	.	105.0	43.0	141.0	0.0	.	102	.	.	Atlas-SNP
SNX14	57231	hgsc.bcm.edu	hg19	6	86277255	86277255	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SNX14	NM_153816	exon5	c.A458T	p.Y153F	TACCTGTACCACG	.	704.0	221.0	807.0	0.0	.	58	.	.	Atlas-SNP
TPD52L1	7164	hgsc.bcm.edu	hg19	6	125584049	125584049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TPD52L1	NM_003287	exon7	c.A556G	p.S186G	CATGCCAGTGCCC	.	79.0	28.0	98.0	0.0	.	14	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129468191	129468191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	LAMA2	NM_000426	exon6	c.A907T	p.N303Y	GCGACAAATGTAT	.	72.0	26.0	120.0	0.0	.	481	.	.	Atlas-SNP
LFNG	3955	hgsc.bcm.edu	hg19	7	2559888	2559888	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	LFNG	NM_001040167	exon1	c.C393T	p.D131D	CCTCGACCTGCTG	.	1149.0	358.0	1341.0	2.0	.	57	.	.	Atlas-SNP
RFC2	5982	hgsc.bcm.edu	hg19	7	73663436	73663436	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	RFC2	NM_181471	exon4	c.A238T	p.T80S	TGCCGGTTCCTGG	.	53.0	15.0	48.0	0.0	.	27	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100681407	100681407	+	Missense_Mutation	SNP	C	C	T	rs201523803		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MUC17	NM_001040105	exon3	c.C6710T	p.A2237V	CTGAGGCTAGCAC	.	82.0	7.0	81.0	0.0	.	804	.	.	Atlas-SNP
RNF133	168433	hgsc.bcm.edu	hg19	7	122338822	122338822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	RNF133	NM_139175	exon1	c.C151T	p.H51Y	ACACATGATTCCC	.	88.0	25.0	111.0	0.0	.	41	.	.	Atlas-SNP
DNAJB6	10049	hgsc.bcm.edu	hg19	7	157155909	157155909	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	DNAJB6	NM_058246	exon3	c.A120C	p.E40D	TAAAGAAGAAGCA	.	179.0	58.0	168.0	0.0	.	39	.	.	Atlas-SNP
RP1L1	94137	hgsc.bcm.edu	hg19	8	10466108	10466108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	RP1L1	NM_178857	exon4	c.G5500A	p.G1834S	CTATGCCTTCGGC	.	27.0	11.0	54.0	0.0	.	453	.	.	Atlas-SNP
PURG	29942	hgsc.bcm.edu	hg19	8	30890148	30890148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PURG	NM_013357	exon1	c.G151A	p.A51T	CCCCGGCCTGATT	.	48.0	23.0	83.0	0.0	.	79	.	.	Atlas-SNP
TTI2	80185	hgsc.bcm.edu	hg19	8	33356779	33356779	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	.	NM_001265581	exon8	c.T1439A	p.I480N	TGGGGAATTTTGG	.	81.0	39.0	121.0	0.0	.	.	.	.	Atlas-SNP
DPYS	1807	hgsc.bcm.edu	hg19	8	105456619	105456619	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	DPYS	NM_001385	exon4	c.A650T	p.H217L	AGCTCGTGGCCCT	.	89.0	18.0	89.0	0.0	.	107	.	.	Atlas-SNP
ASAP1	50807	hgsc.bcm.edu	hg19	8	131146576	131146576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ASAP1	NM_018482	exon15	c.C1183T	p.H395Y	GAAAGTGATATGT	.	92.0	25.0	80.0	0.0	.	133	.	.	Atlas-SNP
JRK	8629	hgsc.bcm.edu	hg19	8	143746721	143746721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	.	NM_003724	exon2	c.G757A	p.A253T	TATAGGCGACGGG	.	132.0	27.0	101.0	0.0	.	.	.	.	Atlas-SNP
SPATA31A3	727830	hgsc.bcm.edu	hg19	9	40702834	40702834	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	FAM75A3_ENST00000356699,NS,carcinoma,0,2	.	NM_001083124	exon4	c.A491T	p.D164V	CTCAGGATCTGGC	.	211.0	40.0	233.0	0.0	.	.	.	.	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	hg19	9	87359941	87359941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	NTRK2	NM_001018065	exon11	c.A1249T	p.I417F	AATGAAATCCCTT	.	175.0	44.0	183.0	0.0	.	331	.	.	Atlas-SNP
MSANTD3	91283	hgsc.bcm.edu	hg19	9	103212870	103212870	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MSANTD3	NM_001198805	exon3	c.C450A	p.C150X	ACTGTGCGATGAT	.	134.0	54.0	144.0	0.0	.	10	.	.	Atlas-SNP
KIAA0368	23392	hgsc.bcm.edu	hg19	9	114182326	114182326	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	KIAA0368	NM_001080398	exon17	c.A2064G	p.R688R	CAAATATCTGGAA	.	131.0	40.0	166.0	0.0	.	144	.	.	Atlas-SNP
TNC	3371	hgsc.bcm.edu	hg19	9	117848857	117848857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TNC	NM_002160	exon3	c.G1153A	p.G385S	AGCGGCCACGATT	.	61.0	8.0	43.0	0.0	.	282	.	.	Atlas-SNP
SMNDC1	10285	hgsc.bcm.edu	hg19	10	112055050	112055050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SMNDC1	NM_005871	exon5	c.A515G	p.E172G	TGGTCCTCTCTTT	.	103.0	23.0	116.0	0.0	.	9	.	.	Atlas-SNP
TUBGCP2	10844	hgsc.bcm.edu	hg19	10	135101696	135101696	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TUBGCP2	NM_001256617	exon12	c.G1743A	p.A581A	CAGGAGCGCTTCC	.	92.0	6.0	109.0	0.0	.	79	.	.	Atlas-SNP
OR5P3	120066	hgsc.bcm.edu	hg19	11	7847513	7847513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	OR5P3	NM_153445	exon1	c.A7G	p.T3A	TTCCAGTCCCCAT	.	64.0	24.0	61.0	0.0	.	44	.	.	Atlas-SNP
ABCC8	6833	hgsc.bcm.edu	hg19	11	17496572	17496572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ABCC8	NM_000352	exon2	c.T151C	p.W51R	TTCCCCATCCTGC	.	108.0	34.0	93.0	0.0	.	170	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33628362	33628362	+	Silent	SNP	C	C	T	rs375293606		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	C11orf41_ENST00000321505,rectum,carcinoma,0,1	.	NM_012194	exon13	c.C4164T	p.N1388N	CCTCAACGGCGAG	.	79.0	23.0	116.0	0.0	.	.	.	.	Atlas-SNP
OR5M3	219482	hgsc.bcm.edu	hg19	11	56237304	56237304	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	OR5M3	NM_001004742	exon1	c.C670T	p.L224L	TTCGCAGAATGGC	.	208.0	69.0	229.0	0.0	.	103	.	.	Atlas-SNP
SLC43A1	8501	hgsc.bcm.edu	hg19	11	57258721	57258721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SLC43A1	NM_001198810	exon11	c.A1169G	p.Q390R	GTGCCCTGAGTTG	.	118.0	40.0	130.0	0.0	.	48	.	.	Atlas-SNP
MS4A5	64232	hgsc.bcm.edu	hg19	11	60197289	60197289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MS4A5	NM_023945	exon1	c.A142G	p.K48E	AAAATGAAAATCT	.	77.0	28.0	86.0	0.0	.	35	.	.	Atlas-SNP
RCOR2	283248	hgsc.bcm.edu	hg19	11	63680390	63680390	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	RCOR2	NM_173587	exon9	c.C921T	p.S307S	GCGCAGGCTGCTG	.	74.0	27.0	104.0	0.0	.	43	.	.	Atlas-SNP
RPS6KA4	8986	hgsc.bcm.edu	hg19	11	64137353	64137353	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	RPS6KA4	NM_003942	exon14	c.G1785A	p.L595L	GAGCCTGGGCGTC	.	60.0	21.0	75.0	0.0	.	85	.	.	Atlas-SNP
GPR152	390212	hgsc.bcm.edu	hg19	11	67220107	67220107	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	GPR152	NM_206997	exon1	c.G89C	p.G30A	TCCCAGCCACCTT	.	222.0	64.0	184.0	0.0	.	41	.	.	Atlas-SNP
LRRC32	2615	hgsc.bcm.edu	hg19	11	76372166	76372166	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	LRRC32	NM_005512	exon3	c.G471A	p.A157A	GTTCTCCGCCAGT	.	40.0	9.0	58.0	0.0	.	74	.	.	Atlas-SNP
ARHGEF12	23365	hgsc.bcm.edu	hg19	11	120280158	120280158	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ARHGEF12	NM_015313	exon4	c.T198C	p.Y66Y	GATATATGGTAAG	.	77.0	29.0	75.0	0.0	.	133	.	.	Atlas-SNP
CD163	9332	hgsc.bcm.edu	hg19	12	7639354	7639354	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	CD163	NM_203416	exon10	c.G2199A	p.E733E	ATAGATCTCTACT	.	79.0	19.0	113.0	0.0	.	221	.	.	Atlas-SNP
PDZRN4	29951	hgsc.bcm.edu	hg19	12	41961651	41961651	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PDZRN4	NM_001164595	exon9	c.G1534T	p.E512X	ATGTTGGAAGAAG	.	96.0	27.0	95.0	0.0	.	346	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46230548	46230548	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ARID2	NM_152641	exon8	c.G797A	p.W266X	GGATTTGGGAGTC	.	210.0	62.0	231.0	0.0	.	311	.	.	Atlas-SNP
H1FNT	341567	hgsc.bcm.edu	hg19	12	48723425	48723425	+	Silent	SNP	C	C	T	rs372377328		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	H1FNT	NM_181788	exon1	c.C351T	p.A117A	CGCCGCCGGCTAC	.	143.0	43.0	134.0	0.0	.	30	.	.	Atlas-SNP
TIMELESS	8914	hgsc.bcm.edu	hg19	12	56812013	56812013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TIMELESS	NM_003920	exon27	c.G3359A	p.G1120D	TCAGAGCCTTGCT	.	83.0	28.0	104.0	0.0	.	107	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124358197	124358197	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	DNAH10	NM_207437	exon45	c.T7524C	p.T2508T	AGATACTTACGGC	.	97.0	34.0	138.0	0.0	.	888	.	.	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	hg19	12	124413834	124413834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	DNAH10	NM_207437	exon70	c.C11965T	p.P3989S	ACCGAGCCACCCA	.	85.0	29.0	84.0	0.0	.	888	.	.	Atlas-SNP
FLT3	2322	hgsc.bcm.edu	hg19	13	28601301	28601301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	FLT3	NM_004119	exon17	c.C2131T	p.H711Y	TCCTGTGAAATTT	.	120.0	6.0	132.0	0.0	.	15525	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103398669	103398669	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	.	NM_001146197	exon4	c.T4378C	p.L1460L	CTTGCAATTTTTC	.	106.0	40.0	111.0	0.0	.	.	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23884310	23884310	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MYH7	NM_000257	exon37	c.G5453C	p.R1818P	CGCACCCGCGCTT	.	44.0	15.0	36.0	0.0	.	349	.	.	Atlas-SNP
SFTA3	253970	hgsc.bcm.edu	hg19	14	36943085	36943085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SFTA3	NM_001101341	exon4	c.T263A	p.M88K	ATTAACATCTGAA	.	217.0	68.0	229.0	0.0	.	9	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64608713	64608713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SYNE2	NM_182914	exon82	c.G15213T	p.W5071C	TAGCTGGATGAAC	.	234.0	66.0	301.0	0.0	.	577	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105409536	105409536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	AHNAK2	NM_138420	exon7	c.G12252T	p.K4084N	TTCCGCCTTGGGG	.	226.0	60.0	258.0	0.0	.	719	.	.	Atlas-SNP
GABPB1	2553	hgsc.bcm.edu	hg19	15	50578220	50578220	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	GABPB1	NM_002041	exon8	c.A1080G	p.K360K	AATTTATTTTGGA	.	85.0	30.0	91.0	0.0	.	33	.	.	Atlas-SNP
TLE3	7090	hgsc.bcm.edu	hg19	15	70366931	70366931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	TLE3_ENST00000558939,NS,carcinoma,0,2	TLE3	NM_001105192	exon6	c.G313A	p.A105T	CCTGCGCCACCTG	.	45.0	12.0	56.0	0.0	.	104	.	.	Atlas-SNP
NMRAL1	57407	hgsc.bcm.edu	hg19	16	4511950	4511950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	NMRAL1	NM_020677	exon6	c.A731C	p.E244A	TAGTCCTCAGGAG	.	129.0	39.0	130.0	0.0	.	31	.	.	Atlas-SNP
XPO6	23214	hgsc.bcm.edu	hg19	16	28188641	28188641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	XPO6	NM_015171	exon3	c.A107G	p.N36S	AAGTTATTAAGAA	.	206.0	68.0	187.0	0.0	.	177	.	.	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30731600	30731600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SRCAP	NM_006662	exon19	c.A2935G	p.T979A	GTGGCTACTGCTC	.	107.0	45.0	95.0	0.0	.	298	.	.	Atlas-SNP
EDC4	23644	hgsc.bcm.edu	hg19	16	67916665	67916665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	EDC4	NM_014329	exon26	c.G3526A	p.G1176S	CTGCGGGGCCTGG	.	109.0	35.0	114.0	0.0	.	101	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11593239	11593239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	DNAH9	NM_001372	exon20	c.T4100C	p.L1367P	ACACGCTGAGCTC	.	109.0	5.0	102.0	0.0	.	695	.	.	Atlas-SNP
EVI2B	2124	hgsc.bcm.edu	hg19	17	29632116	29632116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	EVI2B	NM_006495	exon2	c.C512T	p.T171I	GTTGATGTTGGTT	.	245.0	76.0	308.0	0.0	.	33	.	.	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37882886	37882886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ERBB2	NM_004448	exon24	c.G2944T	p.D982Y	GCCAGGGACCCCC	.	94.0	28.0	103.0	0.0	.	429	.	.	Atlas-SNP
MED24	9862	hgsc.bcm.edu	hg19	17	38189360	38189360	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MED24	NM_014815	exon8	c.A771G	p.T257T	CTCGCCTGTCAGG	.	44.0	18.0	51.0	0.0	.	89	.	.	Atlas-SNP
SPATA20	64847	hgsc.bcm.edu	hg19	17	48625802	48625802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SPATA20	NM_022827	exon3	c.A284G	p.N95S	CCTACAATCCTGT	.	78.0	8.0	92.0	0.0	.	59	.	.	Atlas-SNP
SMARCD2	6603	hgsc.bcm.edu	hg19	17	61911879	61911879	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SMARCD2	NM_001098426	exon7	c.A876G	p.G292G	GAGGTCTCCAGGC	.	82.0	23.0	76.0	0.0	.	29	.	.	Atlas-SNP
ABCA10	10349	hgsc.bcm.edu	hg19	17	67212380	67212380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ABCA10	NM_080282	exon8	c.A650G	p.Y217C	AAGCTATAGAGTG	.	241.0	72.0	252.0	0.0	.	209	.	.	Atlas-SNP
PKN1	5585	hgsc.bcm.edu	hg19	19	14580605	14580605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PKN1	NM_213560	exon17	c.A2213G	p.H738R	TTCTTCACGAACA	.	57.0	4.0	87.0	0.0	.	99	.	.	Atlas-SNP
URI1	8725	hgsc.bcm.edu	hg19	19	30496346	30496346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	.	NM_003796	exon5	c.A446G	p.Q149R	ATTTGCAGAAAAT	.	417.0	129.0	468.0	0.0	.	.	.	.	Atlas-SNP
TSHZ3	57616	hgsc.bcm.edu	hg19	19	31768721	31768721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TSHZ3	NM_020856	exon2	c.A1978G	p.S660G	CATCGCTGGATGC	.	45.0	19.0	53.0	0.0	.	549	.	.	Atlas-SNP
CEBPA	1050	hgsc.bcm.edu	hg19	19	33792731	33792731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	CEBPA	NM_004364	exon1	c.C590A	p.P197Q	GCGGGCGGCGGGT	.	183.0	13.0	323.0	0.0	.	986	.	.	Atlas-SNP
CCDC114	93233	hgsc.bcm.edu	hg19	19	48821778	48821778	+	Missense_Mutation	SNP	C	C	T	rs376555574		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	CCDC114	NM_144577	exon3	c.G115A	p.A39T	GGGCTGCGCTGAT	.	35.0	5.0	43.0	0.0	.	100	.	.	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	hg19	19	50812373	50812373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MYH14	NM_001145809	exon42	c.G5899A	p.D1967N	CTGGAAGATGTCA	.	194.0	64.0	221.0	0.0	.	261	.	.	Atlas-SNP
ZNF816-ZNF321P	100529240	hgsc.bcm.edu	hg19	19	53432469	53432469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	.	NM_001202473	exon4	c.C389T	p.T130I	ATTTCTGTCATGG	.	97.0	40.0	111.0	0.0	.	.	.	.	Atlas-SNP
PMEPA1	56937	hgsc.bcm.edu	hg19	20	56284608	56284608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	PMEPA1	NM_020182	exon1	c.G31A	p.A11T	CGGCGGCGGTGCT	.	96.0	4.0	116.0	0.0	.	29	.	.	Atlas-SNP
XG	7499	hgsc.bcm.edu	hg19	X	2724766	2724766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	XG	NM_001141919	exon8	c.C398T	p.S133F	TCAACTCTCGTTA	.	223.0	30.0	259.0	0.0	.	22	.	.	Atlas-SNP
AP1S2	8905	hgsc.bcm.edu	hg19	X	15864090	15864090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	AP1S2	NM_001272071	exon3	c.A224G	p.N75S	AGTTCATTGTCCT	.	297.0	194.0	375.0	1.0	.	9	.	.	Atlas-SNP
RPS6KA3	6197	hgsc.bcm.edu	hg19	X	20187600	20187600	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	RPS6KA3	NM_004586	exon16	c.A1363T	p.K455X	TGCTTTTATCAAT	.	67.0	7.0	75.0	0.0	.	110	.	.	Atlas-SNP
ZNF630	57232	hgsc.bcm.edu	hg19	X	47918452	47918452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ZNF630	NM_001037735	exon5	c.T1379C	p.V460A	GTACACACATAAG	.	56.0	33.0	49.0	0.0	.	71	.	.	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	hg19	X	69960592	69960592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TEX11	NM_001003811	exon12	c.T847C	p.Y283H	CATAATATTTGGT	.	158.0	95.0	185.0	0.0	.	132	.	.	Atlas-SNP
ITM2A	9452	hgsc.bcm.edu	hg19	X	78616864	78616864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ITM2A	NM_004867	exon5	c.G665A	p.R222K	GACTTTCTGTTAT	.	302.0	58.0	273.0	0.0	.	51	.	.	Atlas-SNP
ARMCX3	51566	hgsc.bcm.edu	hg19	X	100880946	100880946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ARMCX3	NM_016607	exon5	c.A977G	p.N326S	CTCAGAATCAATT	.	296.0	244.0	163.0	0.0	.	33	.	.	Atlas-SNP
SMIM10	644538	hgsc.bcm.edu	hg19	X	134125216	134125216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	.	NM_001163438	exon1	c.C91A	p.R31S	CTGTCGCGCCCGC	.	148.0	67.0	77.0	0.0	.	.	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142718337	142718337	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SLITRK4	NM_001184750	exon2	c.C588T	p.I196I	AACCCCGATATAA	.	224.0	163.0	153.0	0.0	.	162	.	.	Atlas-SNP
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142718339	142718339	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SLITRK4	NM_001184750	exon2	c.A586T	p.I196F	CCCCGATATAAGG	.	221.0	162.0	152.0	0.0	.	162	.	.	Atlas-SNP
CNGA2	1260	hgsc.bcm.edu	hg19	X	150912121	150912121	+	Silent	SNP	G	G	T	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	CNGA2	NM_005140	exon7	c.G1146T	p.R382R	CACCCGGGCAGAG	.	66.0	28.0	45.0	0.0	.	136	.	.	Atlas-SNP
CNGA2	1260	hgsc.bcm.edu	hg19	X	150912140	150912140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	CNGA2	NM_005140	exon7	c.A1165G	p.I389V	GCTAAGATCGATG	.	63.0	48.0	44.0	0.0	.	136	.	.	Atlas-SNP
SEC31A	22872	hgsc.bcm.edu	hg19	4	83778256	83778267	+	In_Frame_Del	DEL	AAAGCCTGAGTA	AAAGCCTGAGTA	-	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	AAAGCCTGAGTA	AAAGCCTGAGTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SEC31A	NM_001077206	exon16	c.1720_1731del	p.574_577del	.	.	167.0	34.0	237.0	0.0	.	227	.	.	Atlas-INDEL
SPATA3	130560	hgsc.bcm.edu	hg19	2	231861059	231861060	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	SPATA3,NS,carcinoma,0,3	SPATA3	NM_139073	exon1	c.111_112insCT	p.P37fs	.	.	107.0	27.0	108.0	0.0	.	52	.	.	Atlas-INDEL
TTC13	79573	hgsc.bcm.edu	hg19	1	231048481	231048481	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	TTC13	NM_024525	exon19	c.2118delG	p.V706fs	.	.	110.0	47.0	83.0	0.0	.	74	.	.	Atlas-INDEL
MUC2	4583	hgsc.bcm.edu	hg19	11	1092602	1092619	+	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-	rs201595190		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MUC2	NM_002457	exon30	c.4420_4437del	p.1474_1479del	.	.	83.0	11.0	110.0	0.0	.	614	.	.	Atlas-INDEL
NCBP1	4686	hgsc.bcm.edu	hg19	9	100403939	100403963	+	Frame_Shift_Del	DEL	TACAGTGTATGTATGCAAAAGATTT	TACAGTGTATGTATGCAAAAGATTT	-	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	TACAGTGTATGTATGCAAAAGATTT	TACAGTGTATGTATGCAAAAGATTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	NCBP1	NM_002486	exon3	c.218_224del	p.73_75del	.	.	52.0	10.0	68.0	0.0	.	64	.	.	Atlas-INDEL
DSPP	1834	hgsc.bcm.edu	hg19	4	88535940	88535941	+	In_Frame_Ins	INS	-	-	TAG	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	DSPP	NM_014208	exon5	c.2126_2127insTAG	p.D709delinsDS	.	.	204.0	14.0	231.0	0.0	.	174	.	.	Atlas-INDEL
DSPP	1834	hgsc.bcm.edu	hg19	4	88535923	88535925	+	In_Frame_Del	DEL	TAG	TAG	-	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	TAG	TAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	DSPP	NM_014208	exon5	c.2108_2110del	p.703_704del	.	.	198.0	32.0	230.0	0.0	.	174	.	.	Atlas-INDEL
SLITRK4	139065	hgsc.bcm.edu	hg19	X	142718332	142718333	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	SLITRK4	NM_173078	exon2	c.593_594insG	p.V198fs	.	.	228.0	159.0	150.0	0.0	.	162	.	.	Atlas-INDEL
ELAC1	55520	hgsc.bcm.edu	hg19	18	48500817	48500820	+	Frame_Shift_Del	DEL	CCAT	CCAT	-	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	CCAT	CCAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	ELAC1	NM_018696	exon2	c.42_45del	p.14_15del	.	.	111.0	36.0	129.0	0.0	.	17	.	.	Atlas-INDEL
MAZ	4150	hgsc.bcm.edu	hg19	16	29819111	29819111	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	MAZ	NM_002383	exon2	c.1004delA	p.K335fs	.	.	52.0	21.0	50.0	0.0	.	48	.	.	Atlas-INDEL
GPS2	2874	hgsc.bcm.edu	hg19	17	7216083	7216095	+	Frame_Shift_Del	DEL	GGTAGAATCGCGG	GGTAGAATCGCGG	-	novel		TCGA-ZP-A9CV-01A-11D-A382-10	TCGA-ZP-A9CV-10B-01D-A385-10	GGTAGAATCGCGG	GGTAGAATCGCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	41039f88-9d78-4c6c-b429-d1c87cd8e568	917fa983-ed0a-4cee-b281-caabdc37221b	.	GPS2	NM_004489	exon11	c.965_977del	p.322_326del	.	.	57.0	10.0	62.0	0.0	.	44	.	.	Atlas-INDEL
