Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CSMD2	114784	hgsc.bcm.edu	hg19	1	34291374	34291374	+	Silent	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	CSMD2	NM_052896	exon7	c.C915A	p.V305V	CTTCTTGACTAGA	.	46.0	19.0	33.0	0.0	.	946	.	.	Atlas-SNP
REG4	83998	hgsc.bcm.edu	hg19	1	120345731	120345731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	REG4	NM_001159353	exon3	c.A125G	p.Y42C	TAACCATAGCAAT	.	141.0	43.0	128.0	0.0	.	36	.	.	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	hg19	1	223177664	223177664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DISP1	NM_032890	exon10	c.C2925A	p.D975E	CTATGACCTCCAG	.	142.0	12.0	76.0	0.0	.	145	.	.	Atlas-SNP
TUBA3E	112714	hgsc.bcm.edu	hg19	2	130951447	130951447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	TUBA3E	NM_207312	exon4	c.T968C	p.V323A	GGGACCACGTCCC	.	128.0	32.0	92.0	0.0	.	73	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196825326	196825326	+	Missense_Mutation	SNP	C	C	A	rs374382600	alternate_allele	TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DNAH7	NM_018897	exon18	c.G2549T	p.R850L	CTGGGGCGCAAAC	.	111.0	33.0	89.0	0.0	.	512	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222365844	222365844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	EPHA4	NM_004438	exon4	c.C872G	p.A291G	CACTTGGCACAGG	.	104.0	6.0	69.0	0.0	.	263	.	.	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	hg19	2	228147228	228147228	+	Missense_Mutation	SNP	C	C	T	rs368342782		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	COL4A3	NM_000091	exon32	c.C2636T	p.P879L	GAAATCCGGGAAT	.	191.0	58.0	171.0	0.0	.	293	.	.	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	233001275	233001275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DIS3L2	NM_152383	exon8	c.G796T	p.A266S	AAATACGCCCTGT	.	168.0	60.0	143.0	0.0	.	77	.	.	Atlas-SNP
OR6B2	389090	hgsc.bcm.edu	hg19	2	240969050	240969050	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	OR6B2	NM_001005853	exon1	c.A797T	p.D266V	TGGGAATCAATGG	.	315.0	118.0	260.0	0.0	.	30	.	.	Atlas-SNP
KBTBD12	166348	hgsc.bcm.edu	hg19	3	127642185	127642185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	KBTBD12	NM_207335	exon1	c.T281C	p.L94S	CAGCTTTGGAGAT	.	176.0	54.0	130.0	0.0	.	41	.	.	Atlas-SNP
DNAJC13	23317	hgsc.bcm.edu	hg19	3	132241675	132241675	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DNAJC13	NM_015268	exon49	c.C5677T	p.R1893X	TAGGTTCGAATTA	.	247.0	49.0	184.0	0.0	.	253	.	.	Atlas-SNP
STX18	53407	hgsc.bcm.edu	hg19	4	4421847	4421847	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	STX18	NM_016930	exon11	c.A922T	p.N308Y	CGTTGTTTTTAAT	.	64.0	22.0	50.0	0.0	.	16	.	.	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	hg19	4	76797690	76797690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	PPEF2	NM_006239	exon11	c.C1070T	p.S357L	AGGGGCGAAGAGG	.	128.0	48.0	90.0	0.0	.	108	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88536436	88536436	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DSPP	NM_014208	exon5	c.C2622T	p.S874S	CAGCAGCAACAGC	.	312.0	29.0	206.0	0.0	.	174	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88537513	88537513	+	Missense_Mutation	SNP	A	A	C	rs112275895		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DSPP	NM_014208	exon5	c.A3699C	p.E1233D	CAATGAAAGCAGC	.	396.0	40.0	270.0	0.0	.	174	.	A|0.500;C|0.500	Atlas-SNP
PCDH18	54510	hgsc.bcm.edu	hg19	4	138452550	138452550	+	Silent	SNP	T	T	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	PCDH18	NM_019035	exon1	c.A693T	p.I231I	TTTTAGTATGGAT	.	82.0	30.0	47.0	0.0	.	229	.	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33534965	33534965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ADAMTS12	NM_030955	exon23	c.A4579G	p.N1527D	GCTGGTTGCATTT	.	112.0	40.0	62.0	0.0	.	464	.	.	Atlas-SNP
MAP3K1	4214	hgsc.bcm.edu	hg19	5	56161727	56161727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	MAP3K1	NM_005921	exon6	c.C1224G	p.I408M	CACCATCCAGAAG	.	195.0	58.0	130.0	0.0	.	355	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60817140	60817140	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ZSWIM6	NM_020928	exon5	c.A1384T	p.K462X	GAGCAAAAGGCCA	.	213.0	39.0	139.0	0.0	.	51	.	.	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	hg19	5	60817151	60817151	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ZSWIM6	NM_020928	exon5	c.G1395A	p.W465X	CAGTTGGCTAAAA	.	217.0	41.0	134.0	0.0	.	51	.	.	Atlas-SNP
CCNB1	891	hgsc.bcm.edu	hg19	5	68471253	68471253	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	CCNB1	NM_031966	exon7	c.A972G	p.K324K	GGCCAAATACCTG	.	167.0	51.0	123.0	0.0	.	36	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90078941	90078941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	GPR98	NM_032119	exon66	c.T13232A	p.V4411E	TTACAGTGGAGGA	.	127.0	35.0	108.0	0.0	.	605	.	.	Atlas-SNP
PCDHGB6	56100	hgsc.bcm.edu	hg19	5	140787904	140787904	+	Silent	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	PCDHGB6	NM_032100	exon1	c.G135T	p.S45S	GGGCTCGGTGGTG	.	146.0	18.0	108.0	0.0	.	120	.	.	Atlas-SNP
PCDHGB6	56100	hgsc.bcm.edu	hg19	5	140789789	140789789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	PCDHGB6	NM_032100	exon1	c.G2020T	p.D674Y	CTGCCAGACCTCA	.	107.0	37.0	63.0	0.0	.	120	.	.	Atlas-SNP
SLC34A1	6569	hgsc.bcm.edu	hg19	5	176821180	176821180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	SLC34A1	NM_003052	exon10	c.G1158T	p.Q386H	CATCCAGAAGGTC	.	139.0	48.0	96.0	0.0	.	73	.	.	Atlas-SNP
ZFP57	346171	hgsc.bcm.edu	hg19	6	29641190	29641190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ZFP57	NM_001109809	exon4	c.G698A	p.C233Y	AGCGTGCAACAGA	.	117.0	35.0	98.0	0.0	.	80	.	.	Atlas-SNP
DOM3Z	1797	hgsc.bcm.edu	hg19	6	31938745	31938745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DOM3Z	NM_005510	exon3	c.C536T	p.P179L	AGGAGCGGTGGCC	.	60.0	23.0	36.0	0.0	.	20	.	.	Atlas-SNP
EEF1A1	1915	hgsc.bcm.edu	hg19	6	74229110	74229110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	EEF1A1	NM_001402	exon3	c.G274A	p.A92T	CTGGGGCATCAAT	.	76.0	29.0	39.0	0.0	.	56	.	.	Atlas-SNP
SLC2A12	154091	hgsc.bcm.edu	hg19	6	134350236	134350236	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	SLC2A12	NM_145176	exon2	c.C727G	p.L243V	CTGAGAGTGCTCT	.	152.0	45.0	134.0	0.0	.	43	.	.	Atlas-SNP
GPR126	57211	hgsc.bcm.edu	hg19	6	142738477	142738477	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	GPR126	NM_198569	exon21	c.A3006T	p.E1002D	AAAAGAAAGTTAT	.	227.0	71.0	171.0	0.0	.	192	.	.	Atlas-SNP
TTYH3	80727	hgsc.bcm.edu	hg19	7	2689555	2689555	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	TTYH3	NM_025250	exon7	c.C804T	p.S268S	CTCCAGCGACTTC	.	95.0	7.0	59.0	0.0	.	36	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81689806	81689806	+	Silent	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	CACNA2D1	NM_000722	exon10	c.C817A	p.R273R	ATGTTCGGATCAG	.	108.0	38.0	72.0	0.0	.	191	.	.	Atlas-SNP
TMEM66	51669	hgsc.bcm.edu	hg19	8	29927547	29927547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	TMEM66	NM_016127	exon3	c.C311G	p.A104G	TTGTATGCAATAT	.	39.0	15.0	31.0	0.0	.	23	.	.	Atlas-SNP
LYN	4067	hgsc.bcm.edu	hg19	8	56866505	56866505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	LYN	NM_002350	exon8	c.A752G	p.K251R	TGGTGAAAAGGCT	.	200.0	63.0	131.0	0.0	.	54	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110509162	110509162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	PKHD1L1	NM_177531	exon64	c.G10342C	p.V3448L	AATCCTGTGGAAA	.	115.0	37.0	82.0	0.0	.	522	.	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	730216	730216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	KANK1	NM_001256876	exon8	c.T2864A	p.L955Q	TGAACCTGACAGA	.	132.0	52.0	77.0	0.0	.	231	.	.	Atlas-SNP
RANBP6	26953	hgsc.bcm.edu	hg19	9	6015125	6015125	+	Missense_Mutation	SNP	G	G	T	rs149927185	alternate_allele	TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	RANBP6	NM_012416	exon1	c.C483A	p.H161Q	GAAAACGTGAAGT	.	128.0	38.0	90.0	0.0	.	127	.	G|1.000;A|0.000	Atlas-SNP
KIAA1958	158405	hgsc.bcm.edu	hg19	9	115337345	115337345	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	KIAA1958	NM_133465	exon2	c.C985T	p.Q329X	GCCCTGCAGCTGC	.	55.0	16.0	42.0	0.0	.	52	.	.	Atlas-SNP
RGS3	5998	hgsc.bcm.edu	hg19	9	116303703	116303703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	RGS3	NM_017790	exon18	c.G1805T	p.G602V	TGATTGGCTGAGC	.	120.0	41.0	75.0	0.0	.	251	.	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	hg19	9	137688730	137688730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	COL5A1	NM_000093	exon36	c.G2881A	p.G961R	TTTCCTGGACCAA	.	122.0	35.0	94.0	0.0	.	323	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26462696	26462696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	MYO3A	NM_017433	exon30	c.C3503A	p.T1168N	CTTCCACTTTCAA	.	222.0	75.0	177.0	0.0	.	371	.	.	Atlas-SNP
LRRC20	55222	hgsc.bcm.edu	hg19	10	72061218	72061218	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	LRRC20	NM_207119	exon5	c.C447T	p.I149I	GAGGTTGATGCTG	.	61.0	17.0	45.0	0.0	.	19	.	.	Atlas-SNP
SORCS1	114815	hgsc.bcm.edu	hg19	10	108339004	108339004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	SORCS1	NM_001206572	exon26	c.T3377C	p.I1126T	CCCGGGATCTTCC	.	77.0	6.0	56.0	0.0	.	534	.	.	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	hg19	11	55579715	55579715	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	OR5L1	NM_001004738	exon1	c.T773G	p.I258S	TTTCCATTTATTG	.	112.0	33.0	70.0	0.0	.	145	.	.	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93836112	93836112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	HEPHL1	NM_001098672	exon15	c.A2608G	p.K870E	ATCCCTAAAAGAT	.	86.0	32.0	68.0	0.0	.	144	.	.	Atlas-SNP
ZNF202	7753	hgsc.bcm.edu	hg19	11	123599920	123599920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ZNF202	NM_003455	exon6	c.G616T	p.V206F	CTGGGACCTCTAT	.	47.0	21.0	30.0	0.0	.	72	.	.	Atlas-SNP
PRMT8	56341	hgsc.bcm.edu	hg19	12	3692299	3692299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	PRMT8	NM_019854	exon8	c.G904A	p.D302N	CGCAACGACTACG	.	108.0	40.0	69.0	0.0	.	97	.	.	Atlas-SNP
BHLHE41	79365	hgsc.bcm.edu	hg19	12	26275865	26275865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	BHLHE41	NM_030762	exon5	c.G583A	p.A195T	CGGCGGCCGAGGG	.	161.0	50.0	121.0	0.0	.	20	.	.	Atlas-SNP
CCDC53	51019	hgsc.bcm.edu	hg19	12	102455087	102455087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	CCDC53	NM_016053	exon2	c.T89C	p.L30P	TGGTTTAGAAAAG	.	155.0	59.0	119.0	0.0	.	14	.	.	Atlas-SNP
C12orf76	400073	hgsc.bcm.edu	hg19	12	110496826	110496826	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	C12orf76	NM_207435	exon3	c.T158A	p.I53N	GTATGAATGAAGC	.	213.0	65.0	153.0	0.0	.	10	.	.	Atlas-SNP
PTPN11	5781	hgsc.bcm.edu	hg19	12	112915714	112915714	+	Silent	SNP	C	C	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	PTPN11	NM_080601	exon9	c.C987A	p.A329A	CATTGCCACACAA	.	198.0	78.0	165.0	0.0	.	623	.	.	Atlas-SNP
BRCA2	675	hgsc.bcm.edu	hg19	13	32936724	32936724	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	BRCA2	NM_000059	exon17	c.T7870A	p.Y2624N	AATCACTATAGAT	.	182.0	35.0	117.0	0.0	.	812	.	.	Atlas-SNP
TPP2	7174	hgsc.bcm.edu	hg19	13	103268744	103268744	+	Splice_Site	SNP	A	A	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	TPP2	NM_003291	exon4	c.391-2A>T	.	CTTTGCAGAAAGA	.	133.0	57.0	77.0	0.0	.	124	.	.	Atlas-SNP
FAM155A	728215	hgsc.bcm.edu	hg19	13	107822876	107822876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	FAM155A	NM_001080396	exon3	c.C1346A	p.T449K	TCCAGCGTGTTGA	.	43.0	13.0	26.0	0.0	.	82	.	.	Atlas-SNP
ING1	3621	hgsc.bcm.edu	hg19	13	111367802	111367802	+	Silent	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ING1	NM_001267728	exon1	c.G12T	p.V4V	CTTCGTGGAATGT	.	73.0	26.0	56.0	0.0	.	106	.	.	Atlas-SNP
RTN1	6252	hgsc.bcm.edu	hg19	14	60212764	60212764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	RTN1	NM_021136	exon2	c.A677G	p.D226G	TCAGTGTCTTTAT	.	163.0	51.0	143.0	0.0	.	139	.	.	Atlas-SNP
NRDE2	55051	hgsc.bcm.edu	hg19	14	90756941	90756941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	.	NM_017970	exon10	c.A1853T	p.D618V	ATATCATCAAACA	.	186.0	66.0	141.0	0.0	.	.	.	.	Atlas-SNP
DPP8	54878	hgsc.bcm.edu	hg19	15	65746732	65746732	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DPP8	NM_197960	exon18	c.C2188T	p.Q730X	CCACCTGATCGTC	.	103.0	32.0	95.0	0.0	.	78	.	.	Atlas-SNP
LOXL1	4016	hgsc.bcm.edu	hg19	15	74235244	74235244	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	LOXL1	NM_005576	exon2	c.T1152C	p.Y384Y	CACTTATGTGCAG	.	98.0	33.0	67.0	0.0	.	25	.	.	Atlas-SNP
IL16	3603	hgsc.bcm.edu	hg19	15	81598333	81598333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	IL16	NM_001172128	exon17	c.T3505C	p.S1169P	GGCAAGTCTCTCA	.	114.0	41.0	81.0	0.0	.	254	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	9892293	9892293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	GRIN2A	NM_000833	exon12	c.G2197A	p.A733T	AGACTGCGGCATC	.	131.0	26.0	84.0	0.0	.	366	.	.	Atlas-SNP
SPN	6693	hgsc.bcm.edu	hg19	16	29675057	29675057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	SPN,NS,carcinoma,0,1	SPN	NM_001030288	exon2	c.C8T	p.T3M	TGGCCACGCTTCT	.	67.0	23.0	62.0	0.0	.	44	.	.	Atlas-SNP
MTSS1L	92154	hgsc.bcm.edu	hg19	16	70698645	70698645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	MTSS1L	NM_138383	exon14	c.G1327T	p.A443S	TGGCGGCGGGGGA	.	108.0	19.0	105.0	0.0	.	22	.	.	Atlas-SNP
OR1E2	8388	hgsc.bcm.edu	hg19	17	3336671	3336671	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	OR1E2	NM_003554	exon1	c.G465A	p.A155A	GGACAGCGCCACC	.	207.0	31.0	164.0	0.0	.	25	.	.	Atlas-SNP
TBX4	9496	hgsc.bcm.edu	hg19	17	59557244	59557244	+	Silent	SNP	C	C	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	TBX4	NM_018488	exon6	c.C705A	p.I235I	ACAGATCACCCAG	.	170.0	19.0	108.0	0.0	.	69	.	.	Atlas-SNP
SERPINB8	5271	hgsc.bcm.edu	hg19	18	61654510	61654510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	SERPINB8	NM_198833	exon7	c.T1123C	p.X375Q	TCTCCGTAAAGAG	.	83.0	4.0	58.0	0.0	.	42	.	.	Atlas-SNP
AP1M1	8907	hgsc.bcm.edu	hg19	19	16314322	16314322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	AP1M1	NM_001130524	exon2	c.A95G	p.H32R	TGGAGCACTTCAT	.	97.0	29.0	74.0	0.0	.	48	.	.	Atlas-SNP
ZNF737	100129842	hgsc.bcm.edu	hg19	19	20728081	20728081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ZNF737	NM_001159293	exon4	c.G928A	p.E310K	GTTTCTCTCCGCT	.	119.0	6.0	87.0	0.0	.	50	.	.	Atlas-SNP
EGLN2	112398	hgsc.bcm.edu	hg19	19	41307313	41307313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	EGLN2	NM_053046	exon2	c.G836T	p.R279L	ACGGGCGCACCAA	.	60.0	15.0	36.0	0.0	.	31	.	.	Atlas-SNP
ZNF415	55786	hgsc.bcm.edu	hg19	19	53612770	53612770	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ZNF415	NM_018355	exon4	c.A528G	p.S176S	GGGTGGTGAAACT	.	155.0	29.0	114.0	0.0	.	68	.	.	Atlas-SNP
RRBP1	6238	hgsc.bcm.edu	hg19	20	17596112	17596112	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	RRBP1	NM_004587	exon23	c.A2715G	p.L905L	AGACTCTAGGGGG	.	39.0	18.0	30.0	0.0	.	157	.	.	Atlas-SNP
ABHD16B	140701	hgsc.bcm.edu	hg19	20	62493842	62493842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ABHD16B	NM_080622	exon1	c.C949T	p.L317F	CTGCTGCTCCGAC	.	73.0	28.0	43.0	0.0	.	22	.	.	Atlas-SNP
BPIFC	254240	hgsc.bcm.edu	hg19	22	32827371	32827371	+	Silent	SNP	A	A	G	rs370427363		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	.	NM_174932	exon11	c.T1180C	p.L394L	GTCCCAAAATAAC	.	301.0	93.0	234.0	0.0	.	.	.	.	Atlas-SNP
ZC3H7B	23264	hgsc.bcm.edu	hg19	22	41751769	41751769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ZC3H7B	NM_017590	exon19	c.A2177G	p.K726R	GGACCAAGGAGCG	.	116.0	44.0	80.0	0.0	.	82	.	.	Atlas-SNP
CASK	8573	hgsc.bcm.edu	hg19	X	41379791	41379791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	CASK	NM_003688	exon27	c.A2648T	p.H883L	AAGTAGTGTGCAT	.	87.0	36.0	50.0	0.0	.	93	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53574709	53574709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	HUWE1	NM_031407	exon68	c.A10561G	p.T3521A	TAGCCGTGGCAGC	.	174.0	32.0	139.0	0.0	.	724	.	.	Atlas-SNP
IRS4	8471	hgsc.bcm.edu	hg19	X	107978082	107978082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	IRS4	NM_003604	exon1	c.G1493A	p.G498D	CCCCGGCCATTTC	.	151.0	58.0	121.0	0.0	.	253	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135429239	135429239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	GPR112	NM_153834	exon6	c.A3374G	p.E1125G	AGGCTGAGACCAC	.	181.0	52.0	144.0	0.0	.	459	.	.	Atlas-SNP
DKC1	1736	hgsc.bcm.edu	hg19	X	153991251	153991251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	DKC1	NM_001363	exon1	c.C11T	p.A4V	CGGATGCGGAAGG	.	362.0	127.0	273.0	0.0	.	41	.	.	Atlas-SNP
PGBD5	79605	hgsc.bcm.edu	hg19	1	230492769	230492770	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	PGBD5	NM_001258311	exon2	c.630_631insA	p.K210fs	.	.	156.0	70.0	92.0	0.0	.	73	.	.	Atlas-INDEL
XIRP2	129446	hgsc.bcm.edu	hg19	2	168102782	168102782	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	XIRP2	NM_152381	exon9	c.4879delG	p.E1627fs	.	.	312.0	126.0	229.0	0.0	.	914	.	.	Atlas-INDEL
ACVR2A	92	hgsc.bcm.edu	hg19	2	148684717	148684722	+	In_Frame_Del	DEL	TGGATG	TGGATG	-	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	TGGATG	TGGATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ACVR2A	NM_001616	exon11	c.1415_1420del	p.472_474del	.	.	146.0	48.0	122.0	0.0	.	125	.	.	Atlas-INDEL
ITIH4	3700	hgsc.bcm.edu	hg19	3	52855127	52855128	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	ITIH4	NM_002218	exon12	c.1559_1560del	p.520_520del	.	.	74.0	22.0	48.0	0.0	.	74	.	.	Atlas-INDEL
RIBC1	158787	hgsc.bcm.edu	hg19	X	53455601	53455616	+	Frame_Shift_Del	DEL	AGAGACCTGAGGCCTA	AGAGACCTGAGGCCTA	-	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	AGAGACCTGAGGCCTA	AGAGACCTGAGGCCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	RIBC1	NM_144968	exon5	c.569_817del	p.190_193del	.	.	350.0	80.0	278.0	0.0	.	20	.	.	Atlas-INDEL
UMPS	7372	hgsc.bcm.edu	hg19	3	124456869	124456886	+	In_Frame_Del	DEL	TCTATCTGCTGATGTTTC	TCTATCTGCTGATGTTTC	-	novel		TCGA-ZP-A9CY-01A-11D-A382-10	TCGA-ZP-A9CY-10B-01D-A385-10	TCTATCTGCTGATGTTTC	TCTATCTGCTGATGTTTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	3a74a213-3d11-481d-80af-c56a90e932ad	e224c0c8-8493-4ce1-855b-34fc11453c98	.	UMPS	NM_000373	exon3	c.764_781del	p.255_261del	.	.	129.0	27.0	96.0	0.0	.	43	.	.	Atlas-INDEL
