Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AGTRAP	57085	hgsc.bcm.edu	hg19	1	11808647	11808647	+	Missense_Mutation	SNP	G	G	T	rs141868096	alternate_allele	TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	AGTRAP	NM_020350	exon4	c.G344T	p.G115V	GCGGGGGTGAGCT	.	26.0	11.0	31.0	0.0	.	9	.	G|1.000;A|0.000	Atlas-SNP
TMEM39B	55116	hgsc.bcm.edu	hg19	1	32566142	32566142	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	TMEM39B	NM_018056	exon8	c.C1215T	p.D405D	CTCTGACGTCTCC	.	88.0	9.0	113.0	0.0	.	66	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62299331	62299331	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	INADL	NM_176877	exon17	c.C1986T	p.D662D	GGTTGACCACAAT	.	195.0	36.0	164.0	0.0	.	179	.	.	Atlas-SNP
ADCY10	55811	hgsc.bcm.edu	hg19	1	167825481	167825481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	ADCY10	NM_018417	exon17	c.G2093A	p.G698D	ACTGCACCAATGA	.	278.0	13.0	188.0	0.0	.	175	.	.	Atlas-SNP
ZNF648	127665	hgsc.bcm.edu	hg19	1	182026606	182026606	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	ZNF648	NM_001009992	exon2	c.A540G	p.V180V	CGTGTCTACACTT	.	83.0	25.0	73.0	0.0	.	111	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	230.0	12.0	181.0	0.0	.	384	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	ALMS1	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	231.0	19.0	178.0	0.0	.	384	.	.	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	hg19	2	108453116	108453116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	RGPD4	NM_182588	exon2	c.T131C	p.L44P	ATGATCTTGCTAA	.	383.0	103.0	381.0	1.0	.	112	.	.	Atlas-SNP
PPIG	9360	hgsc.bcm.edu	hg19	2	170471112	170471112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	PPIG	NM_004792	exon9	c.G425A	p.G142E	TTTTTGGACAAGT	.	403.0	132.0	420.0	1.0	.	100	.	.	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241700204	241700204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	KIF1A	NM_001244008	exon25	c.C2322A	p.D774E	CAGCAGGTCGGGT	.	291.0	107.0	278.0	1.0	.	152	.	.	Atlas-SNP
TRPC3	7222	hgsc.bcm.edu	hg19	4	122833233	122833233	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	TRPC3	NM_001130698	exon5	c.C1357T	p.R453X	GGCTTCGCAGAAT	.	53.0	17.0	68.0	0.0	.	201	.	.	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26915756	26915756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	CDH9	NM_016279	exon3	c.C505T	p.P169S	TTTCAGGAACACT	.	160.0	75.0	97.0	0.0	.	305	.	.	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	hg19	5	52370309	52370309	+	Splice_Site	SNP	T	T	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	ITGA2	NM_002203	exon21	c.2664+2T>C	.	AACAGGTACAACT	.	137.0	6.0	91.0	0.0	.	211	.	.	Atlas-SNP
CATSPER3	347732	hgsc.bcm.edu	hg19	5	134343827	134343827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	CATSPER3	NM_178019	exon4	c.A673T	p.T225S	TTGGCCACGGTAC	.	137.0	10.0	101.0	0.0	.	38	.	.	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	hg19	5	140188506	140188506	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	PCDHA4	NM_031500	exon1	c.C1734T	p.S578S	AGTGAGCGAGCTG	.	65.0	17.0	77.0	0.0	.	419	.	.	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	hg19	5	153190694	153190694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	GRIA1	NM_001258021	exon16	c.G2660A	p.R887Q	ATGGTCGGGTGGT	.	255.0	66.0	232.0	0.0	.	321	.	.	Atlas-SNP
SYNGAP1	8831	hgsc.bcm.edu	hg19	6	33412344	33412344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	SYNGAP1	NM_006772	exon16	c.T3532C	p.Y1178H	GAAGAGTACAAGC	.	102.0	29.0	96.0	0.0	.	202	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84303250	84303250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	SNAP91	NM_001242792	exon17	c.C1643T	p.T548I	GAGGTGGTGGTAG	.	142.0	43.0	138.0	0.0	.	199	.	.	Atlas-SNP
FUCA2	2519	hgsc.bcm.edu	hg19	6	143823511	143823511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	FUCA2	NM_032020	exon4	c.C944T	p.T315I	TCAATTGTAAGAT	.	113.0	39.0	113.0	0.0	.	28	.	.	Atlas-SNP
C7orf10	79783	hgsc.bcm.edu	hg19	7	40234654	40234654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	C7orf10	NM_001193313	exon6	c.T500C	p.I167T	GTTCCATCACAGG	.	67.0	15.0	56.0	0.0	.	99	.	.	Atlas-SNP
ZNF804B	219578	hgsc.bcm.edu	hg19	7	88966180	88966180	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	ZNF804B	NM_181646	exon4	c.T3884A	p.L1295X	CTACATTGTTTGG	.	120.0	25.0	131.0	0.0	.	322	.	.	Atlas-SNP
TSGA13	114960	hgsc.bcm.edu	hg19	7	130356523	130356523	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	TSGA13	NM_052933	exon7	c.T636C	p.H212H	TCTCTCATGGACT	.	109.0	41.0	92.0	0.0	.	35	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	PODXL	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	119.0	13.0	101.0	0.0	.	53	.	.	Atlas-SNP
PTP4A3	11156	hgsc.bcm.edu	hg19	8	142432342	142432342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	PTP4A3	NM_032611	exon1	c.T2C	p.M1T	GCGCCATGGCTCG	.	127.0	45.0	112.0	0.0	.	19	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144873558	144873558	+	Splice_Site	SNP	C	C	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	SCRIB	NM_182706	exon37	c.4822+1G>A	.	AACTCACCAGGGC	.	228.0	145.0	265.0	0.0	.	192	.	.	Atlas-SNP
A1CF	29974	hgsc.bcm.edu	hg19	10	52601663	52601663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	A1CF	NM_001198820	exon6	c.A348T	p.E116D	CTTGGCTTCCACT	.	72.0	28.0	85.0	0.0	.	190	.	.	Atlas-SNP
PRKG1	5592	hgsc.bcm.edu	hg19	10	54042052	54042052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	PRKG1	NM_006258	exon14	c.T1685C	p.L562P	GAATCCTAATGTA	.	137.0	49.0	140.0	0.0	.	167	.	.	Atlas-SNP
SLIT1	6585	hgsc.bcm.edu	hg19	10	98924583	98924583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	SLIT1	NM_003061	exon2	c.C262T	p.R88W	GCACCCGCAGCTG	.	69.0	18.0	52.0	0.0	.	154	.	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411944	6411944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	SMPD1	NM_000543	exon1	c.T116C	p.L39P	TGGCGCTGGCGCT	.	117.0	39.0	114.0	0.0	.	108	.	.	Atlas-SNP
EHF	26298	hgsc.bcm.edu	hg19	11	34680176	34680176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	EHF	NM_001206616	exon8	c.G770A	p.G257D	CTGAGGGCGTCTT	.	156.0	45.0	144.0	0.0	.	38	.	.	Atlas-SNP
SF3B2	10992	hgsc.bcm.edu	hg19	11	65828119	65828119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	SF3B2	NM_006842	exon14	c.A1696G	p.I566V	ATTGACATCGACT	.	144.0	49.0	136.0	0.0	.	85	.	.	Atlas-SNP
MYO7A	4647	hgsc.bcm.edu	hg19	11	76909563	76909563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	MYO7A,NS,carcinoma,0,1	MYO7A	NM_000260	exon34	c.G4465A	p.V1489I	AACGACGTCATCG	.	44.0	15.0	54.0	0.0	.	164	.	.	Atlas-SNP
APOA4	337	hgsc.bcm.edu	hg19	11	116692001	116692001	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	APOA4	NM_000482	exon3	c.C773G	p.A258G	GCACTGGCCGAGA	.	40.0	18.0	61.0	0.0	.	51	.	.	Atlas-SNP
LDHB	3945	hgsc.bcm.edu	hg19	12	21799847	21799847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	LDHB	NM_002300	exon3	c.T233G	p.I78S	GCCACAATTTTAG	.	62.0	17.0	55.0	0.0	.	47	.	.	Atlas-SNP
R3HDM2	22864	hgsc.bcm.edu	hg19	12	57674222	57674222	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	R3HDM2	NM_014925	exon12	c.G1221A	p.Q407Q	CTGCTGCTGTTGC	.	79.0	5.0	64.0	0.0	.	125	.	.	Atlas-SNP
FAM216A	29902	hgsc.bcm.edu	hg19	12	110924510	110924510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	.	NM_013300	exon5	c.G608A	p.R203K	CAGTGAGAAACAA	.	119.0	26.0	81.0	0.0	.	.	.	.	Atlas-SNP
KL	9365	hgsc.bcm.edu	hg19	13	33591317	33591317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	KL	NM_004795	exon1	c.G739A	p.G247S	TGGCACGGCTACG	.	66.0	20.0	36.0	0.0	.	106	.	.	Atlas-SNP
NFATC4	4776	hgsc.bcm.edu	hg19	14	24845611	24845611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	NFATC4	NM_001198967	exon10	c.C2357T	p.P786L	CCTACCCCTCCTA	.	127.0	23.0	101.0	0.0	.	115	.	.	Atlas-SNP
GPHN	10243	hgsc.bcm.edu	hg19	14	67525478	67525478	+	Silent	SNP	T	T	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	GPHN	NM_020806	exon11	c.T1119A	p.L373L	GGTGCTTGGGACA	.	51.0	17.0	45.0	0.0	.	79	.	.	Atlas-SNP
CIITA	4261	hgsc.bcm.edu	hg19	16	10989526	10989526	+	Missense_Mutation	SNP	A	A	T	rs200879588	alternate_allele	TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	CIITA	NM_000246	exon3	c.A200T	p.E67V	TCCCAGAACCCGA	.	120.0	32.0	121.0	0.0	.	92	.	A|0.999;G|0.001	Atlas-SNP
POLR3E	55718	hgsc.bcm.edu	hg19	16	22325438	22325438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	POLR3E	NM_001258033	exon8	c.A511G	p.K171E	GATGTTAAGCAGA	.	79.0	4.0	67.0	0.0	.	62	.	.	Atlas-SNP
ATMIN	23300	hgsc.bcm.edu	hg19	16	81075037	81075037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	ATMIN	NM_015251	exon2	c.G413A	p.C138Y	AAGGCTGCCCCAG	.	267.0	122.0	374.0	0.0	.	50	.	.	Atlas-SNP
EPN2	22905	hgsc.bcm.edu	hg19	17	19186882	19186882	+	Silent	SNP	C	C	G	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	EPN2	NM_148921	exon3	c.C450G	p.T150T	CAAAACCAAAGAG	.	92.0	26.0	88.0	0.0	.	52	.	.	Atlas-SNP
NF1	4763	hgsc.bcm.edu	hg19	17	29588781	29588781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	NF1	NM_001042492	exon35	c.G4630A	p.A1544T	CTTCTTGCATACC	.	304.0	86.0	192.0	0.0	.	1586	.	.	Atlas-SNP
SUZ12	23512	hgsc.bcm.edu	hg19	17	30321616	30321616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	SUZ12	NM_015355	exon13	c.A1471G	p.I491V	GTTTCTATCAATG	.	126.0	60.0	84.0	0.0	.	61	.	.	Atlas-SNP
PSMC5	5705	hgsc.bcm.edu	hg19	17	61908427	61908427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	PSMC5	NM_002805	exon8	c.G711A	p.M237I	TGTCATGGCACGG	.	109.0	45.0	74.0	0.0	.	41	.	.	Atlas-SNP
EEF2	1938	hgsc.bcm.edu	hg19	19	3980917	3980917	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	EEF2	NM_001961	exon8	c.C1072G	p.L358V	AGGGCAGGTGGAT	.	62.0	18.0	39.0	0.0	.	57	.	.	Atlas-SNP
ARHGEF18	23370	hgsc.bcm.edu	hg19	19	7528790	7528790	+	Silent	SNP	A	A	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	ARHGEF18	NM_001130955	exon12	c.A2158C	p.R720R	CCGCCCAGGAGGG	.	231.0	12.0	208.0	0.0	.	129	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9075042	9075042	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	MUC16	NM_024690	exon3	c.C12404G	p.T4135S	AGAGTGGTCTTCT	.	131.0	6.0	154.0	0.0	.	4315	.	.	Atlas-SNP
MYT1	4661	hgsc.bcm.edu	hg19	20	62843408	62843408	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	MYT1	NM_004535	exon9	c.C1434T	p.A478A	CTTAGCCATGCAT	.	26.0	9.0	31.0	0.0	.	152	.	.	Atlas-SNP
PLAC4	191585	hgsc.bcm.edu	hg19	21	42551226	42551226	+	Silent	SNP	G	G	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	.	NM_182832	exon1	c.C330G	p.P110P	GATTGAGGGTGTC	.	143.0	40.0	145.0	0.0	.	.	.	.	Atlas-SNP
PLA2G6	8398	hgsc.bcm.edu	hg19	22	38525570	38525570	+	Splice_Site	SNP	C	C	G	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	PLA2G6	NM_001199562	exon9	c.1078-1G>C	.	GTCTTTCTGTTGG	.	119.0	33.0	129.0	0.0	.	54	.	.	Atlas-SNP
CACNA1I	8911	hgsc.bcm.edu	hg19	22	40080333	40080333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	CACNA1I	NM_021096	exon36	c.G5857A	p.A1953T	CCGGATGCCTCCA	.	80.0	18.0	80.0	0.0	.	264	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3235461	3235461	+	Silent	SNP	G	G	C	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	MXRA5	NM_015419	exon6	c.C6261G	p.T2087T	GATCTGGGTACCG	.	61.0	34.0	69.0	0.0	.	815	.	.	Atlas-SNP
NXF5	55998	hgsc.bcm.edu	hg19	X	101092559	101092559	+	Silent	SNP	A	A	T	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	NXF5	NM_032946	exon15	c.T987A	p.P329P	AGTTTCAGGCAAT	.	249.0	177.0	241.0	0.0	.	65	.	.	Atlas-SNP
LENG9	94059	hgsc.bcm.edu	hg19	19	54974339	54974339	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	LENG9	NM_198988	exon1	c.438delC	p.R146fs	.	.	92.0	31.0	92.0	0.0	.	46	.	.	Atlas-INDEL
RBL2	5934	hgsc.bcm.edu	hg19	16	53487516	53487517	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ZP-A9CZ-01A-11D-A382-10	TCGA-ZP-A9CZ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6d66d5db-1afc-4794-a21f-f14592ef7ea3	c0e67191-8b7f-4693-b0aa-d62f5f00ad42	.	RBL2	NM_005611	exon6	c.919_920insA	p.E307fs	.	.	145.0	71.0	224.0	0.0	.	115	.	.	Atlas-INDEL
