Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
NPHP4	261734	hgsc.bcm.edu	hg19	1	5927958	5927958	+	Splice_Site	SNP	T	T	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	NPHP4	NM_015102	exon25	c.3316-2A>C	.	AAGACCTGTGAGG	.	67.0	35.0	99.0	0.0	.	119	.	.	Atlas-SNP
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8073423	8073423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ERRFI1	NM_018948	exon4	c.G1236T	p.R412S	TGCTTCCCTAAAA	.	129.0	47.0	158.0	0.0	.	42	.	.	Atlas-SNP
PADI1	29943	hgsc.bcm.edu	hg19	1	17555182	17555182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PADI1	NM_013358	exon7	c.G715T	p.E239X	GAAGTTGAGCGAC	.	71.0	19.0	109.0	0.0	.	77	.	.	Atlas-SNP
LRRC41	10489	hgsc.bcm.edu	hg19	1	46751145	46751145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	LRRC41	NM_006369	exon4	c.A1384G	p.I462V	TGGAGATGCTGCG	.	50.0	25.0	74.0	0.0	.	74	.	.	Atlas-SNP
OLFM3	118427	hgsc.bcm.edu	hg19	1	102271685	102271685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	OLFM3	NM_058170	exon5	c.A646G	p.T216A	ATCGGGTTCCAGA	.	103.0	47.0	95.0	0.0	.	178	.	.	Atlas-SNP
LRIF1	55791	hgsc.bcm.edu	hg19	1	111494486	111494486	+	Silent	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	LRIF1	NM_018372	exon2	c.C1020A	p.I340I	AGGATCGATGGTA	.	46.0	22.0	68.0	0.0	.	65	.	.	Atlas-SNP
BCL9	607	hgsc.bcm.edu	hg19	1	147092530	147092530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	BCL9	NM_004326	exon8	c.T2569C	p.S857P	GTGCATTCCCCAG	.	69.0	21.0	39.0	0.0	.	150	.	.	Atlas-SNP
TCHH	7062	hgsc.bcm.edu	hg19	1	152083351	152083351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	TCHH	NM_007113	exon3	c.G2342T	p.R781L	CTCTGACGGCCCC	.	96.0	27.0	65.0	0.0	.	275	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152281292	152281292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FLG	NM_002016	exon3	c.C6070T	p.H2024Y	GTCCATGCCCAAT	.	145.0	16.0	102.0	0.0	.	900	.	.	Atlas-SNP
LCE2D	353141	hgsc.bcm.edu	hg19	1	152636635	152636635	+	Silent	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	LCE2D	NM_178430	exon2	c.C54A	p.P18P	TCCTCCCAAGTGT	.	275.0	59.0	207.0	0.0	.	26	.	.	Atlas-SNP
PYGO2	90780	hgsc.bcm.edu	hg19	1	154931793	154931793	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PYGO2	NM_138300	exon3	c.A683T	p.Q228L	GGTCTCTGGAGAG	.	183.0	42.0	134.0	0.0	.	32	.	.	Atlas-SNP
RUSC1	23623	hgsc.bcm.edu	hg19	1	155292300	155292300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	RUSC1	NM_001105203	exon2	c.T736C	p.W246R	GCTGAATGGAAAA	.	349.0	92.0	252.0	0.0	.	85	.	.	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177199111	177199111	+	Silent	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FAM5B	NM_021165	exon2	c.T99A	p.A33A	GTTGGCTGTCTCA	.	301.0	93.0	222.0	0.0	.	191	.	.	Atlas-SNP
TEX35	84066	hgsc.bcm.edu	hg19	1	178485749	178485749	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	C1orf49_ENST00000367643,NS,carcinoma,0,2	TEX35	NM_001170724	exon5	c.217-1G>T	.	TTGTTAGATAAAG	.	170.0	43.0	114.0	0.0	.	15	.	.	Atlas-SNP
RGSL1	353299	hgsc.bcm.edu	hg19	1	182517465	182517465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	RGSL1_ENST00000294854,colon,carcinoma,0,2	RGSL1	NM_001137669	exon16	c.G2683A	p.V895I	GATCTGGTCAGTT	.	127.0	30.0	96.0	0.0	.	111	.	.	Atlas-SNP
TPR	7175	hgsc.bcm.edu	hg19	1	186329450	186329450	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	TPR	NM_003292	exon11	c.A1146G	p.A382A	AGCTGCTGCAGTA	.	592.0	66.0	374.0	0.0	.	441	.	.	Atlas-SNP
RGS1	5996	hgsc.bcm.edu	hg19	1	192548402	192548402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	RGS1	NM_002922	exon5	c.G580T	p.D194Y	AAATCAGATATTT	.	549.0	252.0	340.0	1.0	.	75	.	.	Atlas-SNP
KIF14	9928	hgsc.bcm.edu	hg19	1	200550340	200550340	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	KIF14	NM_014875	exon20	c.T3324C	p.Y1108Y	AAAAACATAGTAT	.	335.0	67.0	190.0	0.0	.	156	.	.	Atlas-SNP
PFKFB2	5208	hgsc.bcm.edu	hg19	1	207245694	207245694	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PFKFB2	NM_006212	exon15	c.A1496T	p.D499V	CCCAGGACATGCA	.	237.0	60.0	140.0	0.0	.	70	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207643282	207643282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CR2	NM_001006658	exon6	c.C1060A	p.P354T	CCACATCCCCAGA	.	216.0	27.0	110.0	0.0	.	164	.	.	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	hg19	1	238048573	238048573	+	Silent	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ZP4	NM_021186	exon9	c.T1203A	p.P401P	CTGGACAGGGATC	.	274.0	129.0	171.0	0.0	.	161	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240601442	240601442	+	Silent	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FMN2	NM_020066	exon16	c.C4992A	p.I1664I	CAGTATCTGGCAT	.	142.0	39.0	85.0	0.0	.	451	.	.	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	hg19	2	1926174	1926174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MYT1L	NM_015025	exon10	c.C1367T	p.A456V	CTCCCAGCTTCCA	.	105.0	43.0	86.0	0.0	.	241	.	.	Atlas-SNP
KIDINS220	57498	hgsc.bcm.edu	hg19	2	8919137	8919137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	KIDINS220,NS,carcinoma,0,1	KIDINS220	NM_020738	exon19	c.C2503A	p.R835S	TGTTGCGCATGTA	.	82.0	30.0	67.0	0.0	.	136	.	.	Atlas-SNP
DTNB	1838	hgsc.bcm.edu	hg19	2	25819006	25819006	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	DTNB	NM_021907	exon6	c.G552A	p.G184G	AGATGGCCCTTCA	.	146.0	25.0	143.0	0.0	.	43	.	.	Atlas-SNP
EFEMP1	2202	hgsc.bcm.edu	hg19	2	56098002	56098002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	EFEMP1	NM_001039349	exon10	c.G1173T	p.Q391H	TATTGACTGGGGC	.	152.0	48.0	119.0	0.0	.	81	.	.	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	hg19	2	131797621	131797621	+	Silent	SNP	C	C	T	rs150958124	alternate_allele	TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	ARHGEF4_ENST00000392953,NS,carcinoma,0,2	ARHGEF4	NM_032995	exon7	c.C780T	p.D260D	GGATGACGACGCC	.	165.0	7.0	127.0	1.0	.	89	.	C|1.000;A|0.000	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152473927	152473927	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	NEB	NM_001271208	exon75	c.A11132T	p.D3711V	GGTGTATCAGGCA	.	51.0	17.0	44.0	0.0	.	1697	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152534508	152534508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	NEB	NM_004543	exon33	c.A3449T	p.K1150M	GCTTTCTTAGCCG	.	110.0	25.0	108.0	0.0	.	1697	.	.	Atlas-SNP
COBLL1	22837	hgsc.bcm.edu	hg19	2	165557052	165557052	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	COBLL1	NM_014900	exon10	c.A1557C	p.E519D	TTTAGTTTCTTGT	.	102.0	22.0	111.0	0.0	.	122	.	.	Atlas-SNP
PLCL1	5334	hgsc.bcm.edu	hg19	2	198953586	198953586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PLCL1	NM_006226	exon3	c.C2720A	p.A907E	AGAATGCAATCGT	.	66.0	18.0	77.0	0.0	.	358	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238287845	238287845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	COL6A3	NM_004369	exon6	c.T1931C	p.L644S	CCATCCAAAAGAA	.	222.0	45.0	224.0	0.0	.	608	.	.	Atlas-SNP
CCDC54	84692	hgsc.bcm.edu	hg19	3	107097090	107097090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CCDC54	NM_032600	exon1	c.C656A	p.T219N	TGAAAACTCTGAA	.	251.0	130.0	325.0	0.0	.	56	.	.	Atlas-SNP
HTR3C	170572	hgsc.bcm.edu	hg19	3	183776324	183776324	+	Silent	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	HTR3C	NM_130770	exon6	c.C669A	p.A223A	CAAGGCCACCCCA	.	147.0	41.0	194.0	0.0	.	65	.	.	Atlas-SNP
TADA2B	93624	hgsc.bcm.edu	hg19	4	7045509	7045509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	TADA2B	NM_152293	exon1	c.G203A	p.G68D	CCGAGGGCGGCTG	.	96.0	37.0	84.0	0.0	.	29	.	.	Atlas-SNP
CPEB2	132864	hgsc.bcm.edu	hg19	4	15004505	15004505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CPEB2	NM_001177381	exon1	c.G208A	p.G70S	CCCCTCGGCGGCG	.	5.0	5.0	1.0	0.0	.	77	.	.	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39201126	39201126	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	WDR19	NM_025132	exon6	c.A435G	p.G145G	TTGTGGATGTTGG	.	94.0	12.0	95.0	0.0	.	96	.	.	Atlas-SNP
N4BP2	55728	hgsc.bcm.edu	hg19	4	40123848	40123848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	N4BP2	NM_018177	exon9	c.A4117G	p.I1373V	CTGACCATAGACT	.	363.0	82.0	325.0	0.0	.	166	.	.	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	hg19	4	42965143	42965143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	GRXCR1	NM_001080476	exon2	c.T619A	p.Y207N	GGCCATTACCTTG	.	124.0	46.0	148.0	0.0	.	78	.	.	Atlas-SNP
ENPP6	133121	hgsc.bcm.edu	hg19	4	185033941	185033941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ENPP6	NM_153343	exon6	c.G877T	p.V293L	GTTCCACTGTGCT	.	73.0	11.0	81.0	0.0	.	61	.	.	Atlas-SNP
CDH18	1016	hgsc.bcm.edu	hg19	5	19571838	19571838	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CDH18	NM_001167667	exon8	c.C1103G	p.T368S	AGCATAGTAGCAT	.	237.0	70.0	198.0	0.0	.	561	.	.	Atlas-SNP
TAF9	6880	hgsc.bcm.edu	hg19	5	68651607	68651607	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	TAF9	NM_016283	exon4	c.A195G	p.L65L	GTTATCTAACTCA	.	218.0	86.0	201.0	0.0	.	28	.	.	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	hg19	5	79950745	79950745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	MSH3,NS,carcinoma,0,1	MSH3	NM_002439	exon1	c.C199G	p.P67A	GCGCCCCCAGCTC	.	71.0	9.0	67.0	0.0	.	129	.	.	Atlas-SNP
BRD8	10902	hgsc.bcm.edu	hg19	5	137485368	137485368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	BRD8	NM_139199	exon23	c.T3239C	p.L1080S	TCCACCAAGGGAG	.	204.0	68.0	187.0	0.0	.	192	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140562308	140562308	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PCDHB16	NM_020957	exon1	c.G174C	p.E58D	GACAGAGATGTCC	.	133.0	45.0	129.0	0.0	.	159	.	.	Atlas-SNP
PCDHGB1	56104	hgsc.bcm.edu	hg19	5	140731163	140731163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PCDHGB1	NM_018922	exon1	c.C1336A	p.P446T	AATGCACCTGTTT	.	130.0	59.0	98.0	0.0	.	198	.	.	Atlas-SNP
PCDHGA7	56108	hgsc.bcm.edu	hg19	5	140763436	140763436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PCDHGA7	NM_032087	exon1	c.G970T	p.G324C	CAAGATGGTCCTG	.	190.0	69.0	154.0	0.0	.	130	.	.	Atlas-SNP
SLIT3	6586	hgsc.bcm.edu	hg19	5	168727673	168727673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SLIT3	NM_001271946	exon1	c.C41G	p.A14G	AGGCGGGCGCGCA	.	74.0	22.0	55.0	0.0	.	224	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169267834	169267834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	DOCK2	NM_004946	exon27	c.T2777C	p.M926T	TCACCATGGGCCG	.	99.0	38.0	89.0	0.0	.	389	.	.	Atlas-SNP
FAM153B	202134	hgsc.bcm.edu	hg19	5	175530270	175530270	+	Silent	SNP	C	C	T	rs367572504		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FAM153B	NM_001265615	exon12	c.C474T	p.N158N	TTACAACGGCGAG	.	1591.0	310.0	1266.0	0.0	.	28	.	.	Atlas-SNP
SYNGAP1	8831	hgsc.bcm.edu	hg19	6	33414444	33414444	+	Silent	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SYNGAP1	NM_006772	exon17	c.C3675A	p.S1225S	GCTGTCCCAGGAA	.	123.0	27.0	173.0	0.0	.	202	.	.	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	hg19	6	43226800	43226800	+	Silent	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	TTBK1	NM_032538	exon11	c.T1041A	p.P347P	AGTGCCTGGGGAC	.	123.0	28.0	186.0	0.0	.	124	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51917968	51917968	+	Silent	SNP	T	T	A	rs4715271	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PKHD1	NM_170724	exon21	c.A2046T	p.P682P	CAGCACTGGGGAG	.	141.0	30.0	166.0	0.0	.	927	.	T|0.921;G|0.079	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66005906	66005906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	EYS	NM_001142800	exon12	c.C1873T	p.H625Y	AATTGTGCGAAAG	.	78.0	18.0	122.0	0.0	.	527	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	69349286	69349286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	BAI3,NS,carcinoma,0,1	BAI3	NM_001704	exon3	c.G719C	p.C240S	AAGTCTGCAATCT	.	26.0	6.0	55.0	0.0	.	451	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90408665	90408665	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MDN1	NM_014611	exon59	c.A9087G	p.P3029P	GTACTCTGGATTT	.	71.0	19.0	74.0	0.0	.	478	.	.	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	hg19	6	123696761	123696761	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	TRDN	NM_001251987	exon19	c.A1265T	p.Q422L	TTTACTTGTTTGT	.	105.0	20.0	109.0	0.0	.	88	.	.	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	hg19	6	128388829	128388829	+	Silent	SNP	C	C	T	rs150985952		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PTPRK	NM_001135648	exon12	c.G1992A	p.G664G	TGCACCCCCACTC	.	78.0	20.0	96.0	0.0	.	330	.	C|1.000;T|0.000	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159654122	159654122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FNDC1	NM_032532	exon11	c.A2578G	p.R860G	CACCCCAGGGTTC	.	60.0	16.0	70.0	0.0	.	250	.	.	Atlas-SNP
PDE1C	5137	hgsc.bcm.edu	hg19	7	31904592	31904592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PDE1C	NM_001191058	exon8	c.G894T	p.Q298H	CACTGTCTGTGTA	.	177.0	48.0	105.0	0.0	.	465	.	.	Atlas-SNP
ZNF3	7551	hgsc.bcm.edu	hg19	7	99674959	99674959	+	Missense_Mutation	SNP	C	C	T	rs372465031	alternate_allele	TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ZNF3	NM_032924	exon3	c.G22A	p.V8I	GAGATACGAGATC	.	140.0	45.0	115.0	0.0	.	54	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117375412	117375412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CTTNBP2	NM_033427	exon15	c.T3599C	p.L1200S	TTTTCTAAATTTT	.	189.0	29.0	158.0	0.0	.	200	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141795408	141795408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MGAM	NM_004668	exon41	c.C4814A	p.S1605Y	ATATTTCCAGAAC	.	94.0	17.0	96.0	0.0	.	767	.	.	Atlas-SNP
CUL1	8454	hgsc.bcm.edu	hg19	7	148484107	148484107	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CUL1	NM_003592	exon13	c.C1374T	p.D458D	AGAAGACAAAGAC	.	56.0	22.0	48.0	0.0	.	80	.	.	Atlas-SNP
CUL1	8454	hgsc.bcm.edu	hg19	7	148484108	148484108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CUL1	NM_003592	exon13	c.A1375G	p.K459E	GAAGACAAAGACG	.	56.0	22.0	49.0	0.0	.	80	.	.	Atlas-SNP
GIMAP6	474344	hgsc.bcm.edu	hg19	7	150325099	150325099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	GIMAP6	NM_001244072	exon3	c.A797G	p.H266R	CCGCAATGGCGCC	.	84.0	30.0	70.0	0.0	.	60	.	.	Atlas-SNP
RB1CC1	9821	hgsc.bcm.edu	hg19	8	53596502	53596502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	RB1CC1	NM_001083617	exon4	c.A143G	p.N48S	CCTCCATTGACCA	.	88.0	44.0	69.0	0.0	.	163	.	.	Atlas-SNP
CCNE2	9134	hgsc.bcm.edu	hg19	8	95900175	95900175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CCNE2	NM_057749	exon7	c.T580C	p.F194L	CAATGAATAATGA	.	382.0	106.0	349.0	0.0	.	29	.	.	Atlas-SNP
CNTFR	1271	hgsc.bcm.edu	hg19	9	34568951	34568951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CNTFR	NM_147164	exon3	c.G29T	p.C10F	ACAGCACAGCAGG	.	116.0	37.0	91.0	0.0	.	46	.	.	Atlas-SNP
CA9	768	hgsc.bcm.edu	hg19	9	35680975	35680975	+	Missense_Mutation	SNP	G	G	A	rs374397867	alternate_allele	TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CA9	NM_001216	exon11	c.G1333A	p.G445R	ACCAAAGGGGGTG	.	57.0	6.0	56.0	0.0	.	48	.	.	Atlas-SNP
TOMM5	401505	hgsc.bcm.edu	hg19	9	37588927	37588927	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	TOMM5	NM_001134485	exon2	c.C226G	p.P76A	TAAATGGAGCTGA	.	96.0	29.0	70.0	0.0	.	3	.	.	Atlas-SNP
SFMBT2	57713	hgsc.bcm.edu	hg19	10	7318928	7318928	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SFMBT2	NM_001029880	exon7	c.T796A	p.S266T	ATTCAGAGGCCAT	.	73.0	11.0	69.0	0.0	.	209	.	.	Atlas-SNP
OTUD1	220213	hgsc.bcm.edu	hg19	10	23729363	23729363	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	OTUD1	NM_001145373	exon1	c.G977C	p.S326T	CTGTCAGCAAGAC	.	78.0	5.0	74.0	0.0	.	9	.	.	Atlas-SNP
PRF1	5551	hgsc.bcm.edu	hg19	10	72357836	72357836	+	Silent	SNP	T	T	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PRF1	NM_001083116	exon3	c.A1641C	p.P547P	GTTTCCTGGAGGC	.	52.0	6.0	50.0	0.0	.	64	.	.	Atlas-SNP
SYNPO2L	79933	hgsc.bcm.edu	hg19	10	75407632	75407632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SYNPO2L	NM_001114133	exon4	c.G1778A	p.R593H	TCTGGGCGCGCAG	.	90.0	15.0	124.0	0.0	.	118	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	107006989	107006989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SORCS3	NM_014978	exon22	c.C3005A	p.S1002Y	TCCAGTCCCAGCT	.	67.0	25.0	92.0	0.0	.	282	.	.	Atlas-SNP
FAM160B1	57700	hgsc.bcm.edu	hg19	10	116603573	116603573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FAM160B1	NM_020940	exon7	c.A890G	p.K297R	CTGCAAAGTGCCT	.	68.0	8.0	99.0	0.0	.	107	.	.	Atlas-SNP
KNDC1	85442	hgsc.bcm.edu	hg19	10	135009312	135009312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	KNDC1	NM_152643	exon10	c.C1721A	p.A574D	CCGCGGCTGAGGC	.	106.0	20.0	98.0	0.0	.	155	.	.	Atlas-SNP
CDHR5	53841	hgsc.bcm.edu	hg19	11	621353	621353	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CDHR5	NM_031264	exon6	c.C610T	p.L204L	GCACCAGCAGCCA	.	77.0	20.0	70.0	0.0	.	77	.	.	Atlas-SNP
PRDM11	56981	hgsc.bcm.edu	hg19	11	45246411	45246411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PRDM11	NM_001256696	exon7	c.G1386A	p.M462I	TTGGATGAGATTA	.	30.0	11.0	37.0	0.0	.	53	.	.	Atlas-SNP
PTPRJ	5795	hgsc.bcm.edu	hg19	11	48142579	48142579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PTPRJ	NM_001098503	exon4	c.A377G	p.K126R	ACATTAAAGCTGT	.	173.0	71.0	209.0	0.0	.	225	.	.	Atlas-SNP
PRPF19	27339	hgsc.bcm.edu	hg19	11	60670109	60670109	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PRPF19	NM_014502	exon5	c.A408G	p.P136P	AGCCTGTGGTTTC	.	162.0	23.0	161.0	0.0	.	62	.	.	Atlas-SNP
CDC42BPG	55561	hgsc.bcm.edu	hg19	11	64600763	64600763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CDC42BPG	NM_017525	exon24	c.A2671G	p.K891E	GACACTTGGTCGG	.	91.0	30.0	110.0	0.0	.	101	.	.	Atlas-SNP
ARHGEF17	9828	hgsc.bcm.edu	hg19	11	73068372	73068372	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ARHGEF17	NM_014786	exon9	c.G4087C	p.G1363R	ATCAAAGGTGGGT	.	77.0	10.0	97.0	0.0	.	117	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103060402	103060402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	DYNC2H1	NM_001377	exon45	c.T7294C	p.Y2432H	TTTAGTTACCCAG	.	83.0	8.0	71.0	0.0	.	246	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118376851	118376851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MLL	NM_001197104	exon27	c.C10244T	p.S3415L	GGACATCACAGAC	.	87.0	19.0	104.0	0.0	.	548	.	.	Atlas-SNP
DDX6	1656	hgsc.bcm.edu	hg19	11	118650350	118650350	+	Silent	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	DDX6	NM_004397	exon4	c.T360A	p.S120S	AATAGGAGATGGC	.	272.0	49.0	295.0	0.0	.	64	.	.	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32491901	32491901	+	Missense_Mutation	SNP	G	G	T	rs141754177	bycluster;alternate_allele	TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	BICD1	NM_001714	exon8	c.G2752T	p.V918L	TTAACCGTGGCTC	.	43.0	24.0	45.0	0.0	.	89	.	G|1.000;A|0.000	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49433342	49433342	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MLL2	NM_003482	exon32	c.A8105T	p.Q2702L	TTCTCCTGCCGCA	.	21.0	9.0	43.0	0.0	.	1173	.	.	Atlas-SNP
CEP290	80184	hgsc.bcm.edu	hg19	12	88534999	88534999	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CEP290	NM_025114	exon2	c.T86A	p.L29X	GAAATCAATAAAT	.	326.0	70.0	346.0	0.0	.	195	.	.	Atlas-SNP
ASCL4	121549	hgsc.bcm.edu	hg19	12	108168997	108168997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ASCL4	NM_203436	exon1	c.T5C	p.M2T	AAATGATGGAGAC	.	150.0	64.0	169.0	0.0	.	28	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124821697	124821697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	NCOR2	NM_006312	exon40	c.C5717T	p.P1906L	GCAGCCGGGCGAA	.	112.0	45.0	158.0	0.0	.	475	.	.	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26152991	26152991	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ATP8A2	NM_016529	exon21	c.A1821T	p.K607N	CTCAAAATATATG	.	66.0	28.0	67.0	0.0	.	181	.	.	Atlas-SNP
FRY	10129	hgsc.bcm.edu	hg19	13	32776494	32776494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FRY	NM_023037	exon31	c.T3848C	p.I1283T	TATAGATCCTTGA	.	139.0	63.0	168.0	0.0	.	312	.	.	Atlas-SNP
THSD1	55901	hgsc.bcm.edu	hg19	13	52971697	52971697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	THSD1	NM_018676	exon3	c.A691G	p.T231A	GTCCTGTGGAGGT	.	155.0	51.0	133.0	0.0	.	89	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64494342	64494342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SYNE2	NM_182914	exon43	c.T6545C	p.L2182S	CTCAGTTAAAGAT	.	262.0	53.0	309.0	0.0	.	577	.	.	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102446137	102446137	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	DYNC1H1	NM_001376	exon4	c.T600C	p.I200I	AAATATTGAAATT	.	152.0	26.0	173.0	0.0	.	395	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54305889	54305889	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	UNC13C	NM_001080534	exon1	c.A789G	p.L263L	TGAACTACGAGGG	.	55.0	20.0	86.0	0.0	.	674	.	.	Atlas-SNP
MRPL46	26589	hgsc.bcm.edu	hg19	15	89003046	89003046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MRPL46	NM_022163	exon4	c.A638G	p.Y213C	AATGTGTAGTGCC	.	83.0	20.0	81.0	0.0	.	13	.	.	Atlas-SNP
GSPT1	2935	hgsc.bcm.edu	hg19	16	11991860	11991860	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	GSPT1	NM_001130006	exon2	c.T385C	p.L129L	CACACAATGACTG	.	126.0	35.0	135.0	0.0	.	71	.	.	Atlas-SNP
ACSM2A	123876	hgsc.bcm.edu	hg19	16	20489989	20489989	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ACSM2A	NM_001010845	exon11	c.C1271G	p.S424C	TCTTCTCTGGCTA	.	73.0	23.0	87.0	0.0	.	120	.	.	Atlas-SNP
VPS4A	27183	hgsc.bcm.edu	hg19	16	69353433	69353433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	VPS4A	NM_013245	exon6	c.G607T	p.G203W	TGGCTGGGGGAGA	.	68.0	13.0	68.0	0.0	.	18	.	.	Atlas-SNP
GEMIN4	50628	hgsc.bcm.edu	hg19	17	650889	650889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	GEMIN4	NM_015721	exon2	c.C394A	p.L132M	TGGGCAGGGCCAT	.	111.0	5.0	192.0	0.0	.	116	.	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	hg19	17	12608447	12608447	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MYOCD	NM_001146312	exon2	c.T58C	p.L20L	TAAGTTTTACAGT	.	295.0	88.0	364.0	0.0	.	291	.	.	Atlas-SNP
PROCA1	147011	hgsc.bcm.edu	hg19	17	27030972	27030972	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PROCA1	NM_152465	exon4	c.C615T	p.I205I	CTTCTTGATCACC	.	51.0	16.0	58.0	0.0	.	28	.	.	Atlas-SNP
LHX1	3975	hgsc.bcm.edu	hg19	17	35300131	35300131	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	LHX1	NM_005568	exon5	c.A924G	p.P308P	GACACCAGTGGAC	.	253.0	55.0	291.0	0.0	.	48	.	.	Atlas-SNP
KRT27	342574	hgsc.bcm.edu	hg19	17	38936060	38936060	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	KRT27	NM_181537	exon4	c.C738T	p.N246N	GGCCGCGTTCATC	.	81.0	24.0	124.0	0.0	.	41	.	.	Atlas-SNP
HAP1	9001	hgsc.bcm.edu	hg19	17	39890781	39890781	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	HAP1	NM_177977	exon1	c.G106T	p.E36X	AGGGCTCCGGAGC	.	75.0	19.0	78.0	0.0	.	48	.	.	Atlas-SNP
CACNG4	27092	hgsc.bcm.edu	hg19	17	64961144	64961144	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CACNG4	NM_014405	exon1	c.C117T	p.H39H	CGCGCACATCTGC	.	152.0	42.0	185.0	0.0	.	44	.	.	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	hg19	17	72842250	72842250	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	GRIN2C	NM_000835	exon11	c.T2305A	p.W769R	GCTTCCAGTGGGA	.	69.0	16.0	101.0	0.0	.	144	.	.	Atlas-SNP
PGS1	9489	hgsc.bcm.edu	hg19	17	76399940	76399940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PGS1	NM_024419	exon7	c.T1172C	p.L391P	TCAACCTGACCCA	.	87.0	25.0	97.0	0.0	.	30	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	6956653	6956653	+	Silent	SNP	T	T	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	LAMA1	NM_005559	exon56	c.A8076C	p.P2692P	GGGCTCTGGCAAG	.	67.0	19.0	40.0	0.0	.	458	.	.	Atlas-SNP
CXXC1	30827	hgsc.bcm.edu	hg19	18	47809307	47809307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CXXC1	NM_001101654	exon14	c.C1753T	p.R585C	GCAGGCGGCAGAA	.	108.0	20.0	93.0	0.0	.	50	.	.	Atlas-SNP
CDH19	28513	hgsc.bcm.edu	hg19	18	64211362	64211362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CDH19	NM_021153	exon7	c.A1060T	p.T354S	AAGTGGTGGAAGC	.	108.0	42.0	103.0	0.0	.	141	.	.	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	hg19	18	76757118	76757118	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SALL3	NM_171999	exon3	c.C3699T	p.I1233I	CGTCATCCAGAAC	.	166.0	55.0	171.0	0.0	.	162	.	.	Atlas-SNP
ADAMTSL5	339366	hgsc.bcm.edu	hg19	19	1510211	1510211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ADAMTSL5	NM_213604	exon5	c.T299G	p.L100R	TTGTACAGGGCAC	.	81.0	11.0	77.0	0.0	.	24	.	.	Atlas-SNP
ATCAY	85300	hgsc.bcm.edu	hg19	19	3913803	3913803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ATCAY	NM_033064	exon9	c.T914C	p.L305P	AAGACCTGGAGCA	.	82.0	24.0	79.0	0.0	.	84	.	.	Atlas-SNP
ZNF506	440515	hgsc.bcm.edu	hg19	19	19906192	19906192	+	Silent	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ZNF506	NM_001099269	exon4	c.T504A	p.T168T	TTTTCCAGTATCT	.	118.0	37.0	102.0	0.0	.	36	.	.	Atlas-SNP
TGFB1	7040	hgsc.bcm.edu	hg19	19	41858864	41858864	+	Missense_Mutation	SNP	C	C	T	rs199758510	bycluster	TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	TGFB1	NM_000660	exon1	c.G86A	p.G29E	GATAGTCCCGCGG	.	65.0	22.0	54.0	0.0	.	27	.	.	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	hg19	19	44933761	44933761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ZNF229	NM_014518	exon6	c.C1195A	p.H399N	CAGTGTGGACCCT	.	152.0	48.0	115.0	0.0	.	123	.	.	Atlas-SNP
FAM71E2	284418	hgsc.bcm.edu	hg19	19	55869581	55869581	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FAM71E2	NM_001145402	exon9	c.T2655C	p.T885T	CCTCACAGTTTCA	.	139.0	47.0	130.0	0.0	.	41	.	.	Atlas-SNP
NLRP4	147945	hgsc.bcm.edu	hg19	19	56388508	56388508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	NLRP4	NM_134444	exon8	c.C2672T	p.T891M	CGCATACGGATTG	.	153.0	36.0	151.0	0.0	.	331	.	.	Atlas-SNP
NINL	22981	hgsc.bcm.edu	hg19	20	25478971	25478971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	NINL	NM_025176	exon9	c.C1044A	p.F348L	CACGCTGAAGTCC	.	39.0	15.0	41.0	0.0	.	148	.	.	Atlas-SNP
BPIFB3	359710	hgsc.bcm.edu	hg19	20	31643273	31643273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	.	NM_182658	exon1	c.G44T	p.W15L	TGCTCTGGGGCCT	.	63.0	9.0	49.0	0.0	.	.	.	.	Atlas-SNP
CBFA2T2	9139	hgsc.bcm.edu	hg19	20	32207337	32207337	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CBFA2T2	NM_005093	exon5	c.A462G	p.T154T	AGTGACAATTGAG	.	103.0	22.0	101.0	0.0	.	93	.	.	Atlas-SNP
MYBL2	4605	hgsc.bcm.edu	hg19	20	42343871	42343871	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MYBL2	NM_002466	exon13	c.A1922T	p.E641V	AGCCCGAGAAGGC	.	233.0	90.0	247.0	0.0	.	82	.	.	Atlas-SNP
PHACTR3	116154	hgsc.bcm.edu	hg19	20	58348348	58348348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PHACTR3	NM_080672	exon6	c.T766C	p.F256L	ACACTCTTCCAAG	.	110.0	27.0	127.0	0.0	.	104	.	.	Atlas-SNP
B3GALT5	10317	hgsc.bcm.edu	hg19	21	41032874	41032874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	B3GALT5	NM_033170	exon3	c.A388G	p.N130D	TATTACAATCTGA	.	87.0	14.0	103.0	0.0	.	40	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47692553	47692553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	MCM3AP	NM_003906	exon8	c.A2387C	p.K796T	ACACCCTTGTTTC	.	89.0	21.0	103.0	0.0	.	146	.	.	Atlas-SNP
CRYBB2	1415	hgsc.bcm.edu	hg19	22	25627596	25627596	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CRYBB2	NM_000496	exon6	c.T475A	p.Y159N	CCCGGCTACCGTG	.	184.0	44.0	176.0	0.0	.	18	.	.	Atlas-SNP
CHEK2	11200	hgsc.bcm.edu	hg19	22	29130702	29130702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CHEK2	NM_145862	exon2	c.G8A	p.R3Q	GACTCCCGAGACA	.	55.0	20.0	52.0	0.0	.	438	.	.	Atlas-SNP
HMGXB4	10042	hgsc.bcm.edu	hg19	22	35661318	35661318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	HMGXB4	NM_001003681	exon5	c.T937C	p.Y313H	GATTCTTACCGAG	.	153.0	27.0	151.0	0.0	.	52	.	.	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	hg19	22	42280874	42280874	+	Silent	SNP	C	C	T	rs200493376		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SREBF2	NM_004599	exon11	c.C2067T	p.S689S	CTGTTCCGATGTA	.	116.0	26.0	122.0	0.0	.	99	.	C|0.999;T|0.001	Atlas-SNP
FRMPD4	9758	hgsc.bcm.edu	hg19	X	12516855	12516855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	FRMPD4	NM_014728	exon2	c.A98T	p.Q33L	TGAGCCAGGTGCC	.	233.0	92.0	197.0	0.0	.	214	.	.	Atlas-SNP
PDHA1	5160	hgsc.bcm.edu	hg19	X	19367462	19367462	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	PDHA1	NM_001173454	exon3	c.T204G	p.F68L	TAATTTTGCAAAT	.	354.0	104.0	349.0	0.0	.	85	.	.	Atlas-SNP
USP27X	389856	hgsc.bcm.edu	hg19	X	49646154	49646154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	USP27X	NM_001145073	exon1	c.T1244C	p.L415S	GGTATTTACTGTT	.	267.0	74.0	225.0	0.0	.	25	.	.	Atlas-SNP
ARR3	407	hgsc.bcm.edu	hg19	X	69497340	69497340	+	Silent	SNP	A	A	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	ARR3	NM_004312	exon9	c.A570T	p.S190S	TCTGTCAGCTCAG	.	388.0	119.0	337.0	1.0	.	41	.	.	Atlas-SNP
CUL4B	8450	hgsc.bcm.edu	hg19	X	119677623	119677623	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	CUL4B	NM_003588	exon10	c.A1269G	p.E423E	TGCTTCTTCTTCT	.	153.0	50.0	144.0	0.0	.	181	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144905172	144905172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SLITRK2	NM_001144005	exon5	c.G1229T	p.R410M	ACAACAGGATTGC	.	229.0	66.0	229.0	0.0	.	221	.	.	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	hg19	X	144906450	144906450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	SLITRK2	NM_001144005	exon5	c.T2507A	p.L836Q	AAGTTCTGGAAAA	.	454.0	145.0	388.0	0.0	.	221	.	.	Atlas-SNP
DSG4	147409	hgsc.bcm.edu	hg19	18	28992917	28992917	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ZP-A9D1-01A-11D-A382-10	TCGA-ZP-A9D1-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	2460c441-afaf-48ea-b29d-e1ec16a2b246	a8172d2a-1255-4865-938b-5a96f7faf691	.	DSG4	NM_001134453	exon15	c.2538delC	p.D846fs	.	.	121.0	40.0	84.0	0.0	.	343	.	.	Atlas-INDEL
