Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
HSPG2	3339	hgsc.bcm.edu	hg19	1	22178363	22178363	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	HSPG2	NM_005529	exon54	c.C6927T	p.Y2309Y	GCAGACGTACTGT	.	82.0	4.0	102.0	0.0	.	311	.	.	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	hg19	1	22216583	22216583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	HSPG2	NM_005529	exon6	c.T465A	p.N155K	ATCCGCATTCCCT	.	125.0	15.0	160.0	0.0	.	311	.	.	Atlas-SNP
NES	10763	hgsc.bcm.edu	hg19	1	156639240	156639240	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	NES	NM_006617	exon4	c.G4740A	p.Q1580Q	CTCCTCCTGAAAG	.	121.0	6.0	113.0	0.0	.	196	.	.	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158648295	158648295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	SPTA1	NM_003126	exon6	c.G708T	p.Q236H	CTTAGACTGAATT	.	83.0	28.0	73.0	0.0	.	720	.	.	Atlas-SNP
SLAMF8	56833	hgsc.bcm.edu	hg19	1	159802783	159802783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	SLAMF8	NM_020125	exon3	c.A485G	p.Y162C	TAACCTATAGCTG	.	194.0	94.0	163.0	0.0	.	30	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190067645	190067645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	FAM5C,NS,carcinoma,0,1	FAM5C	NM_199051	exon8	c.G1804T	p.D602Y	GTAGGTCCAACTT	.	162.0	45.0	104.0	0.0	.	343	.	.	Atlas-SNP
GPR25	2848	hgsc.bcm.edu	hg19	1	200842406	200842406	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	GPR25	NM_005298	exon1	c.C241T	p.L81L	CTGCACCTGGCGG	.	101.0	50.0	92.0	0.0	.	23	.	.	Atlas-SNP
IKBKE	9641	hgsc.bcm.edu	hg19	1	206658535	206658535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	IKBKE	NM_001193322	exon15	c.C1508T	p.A503V	AGCTAGCGGAGGT	.	194.0	45.0	180.0	0.0	.	77	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ALMS1	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	197.0	29.0	145.0	0.0	.	384	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613065	73613065	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ALMS1	NM_015120	exon1	c.G69A	p.E23E	GGAGGAGGAGGAA	.	460.0	26.0	543.0	0.0	.	384	.	.	Atlas-SNP
SESTD1	91404	hgsc.bcm.edu	hg19	2	180008343	180008343	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	SESTD1	NM_178123	exon9	c.A825T	p.E275D	AATCTCTTCTAAC	.	78.0	28.0	77.0	0.0	.	66	.	.	Atlas-SNP
NDUFS1	4719	hgsc.bcm.edu	hg19	2	206994823	206994823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	NDUFS1	NM_001199984	exon15	c.T1739G	p.I580S	TAAATAATGAAAC	.	109.0	47.0	108.0	0.0	.	82	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	A	rs121913399		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	CTNNB1,gallbladder,other,-1,1	CTNNB1	NM_001098209	exon3	c.G100A	p.G34R	GACTCTGGAATCC	.	159.0	113.0	193.0	0.0	.	4904	.	.	Atlas-SNP
BAP1	8314	hgsc.bcm.edu	hg19	3	52437545	52437545	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	BAP1	NM_004656	exon13	c.T1616A	p.L539Q	ACACGCAGCAGGC	.	110.0	17.0	119.0	0.0	.	371	.	.	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	hg19	4	77680796	77680796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	SHROOM3	NM_020859	exon9	c.T5297C	p.M1766T	AAGAGATGCCAGC	.	215.0	81.0	238.0	0.0	.	134	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88537513	88537513	+	Missense_Mutation	SNP	A	A	C	rs112275895		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	DSPP	NM_014208	exon5	c.A3699C	p.E1233D	CAATGAAAGCAGC	.	386.0	73.0	274.0	0.0	.	174	.	A|0.500;C|0.500	Atlas-SNP
NFKB1	4790	hgsc.bcm.edu	hg19	4	103528819	103528819	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	NFKB1	NM_003998	exon19	c.T2138G	p.V713G	CCCATGTGGACAG	.	68.0	23.0	77.0	0.0	.	78	.	.	Atlas-SNP
CASP3	836	hgsc.bcm.edu	hg19	4	185552301	185552301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	CASP3	NM_004346	exon7	c.G494A	p.G165D	TCTGTACCACGGC	.	104.0	42.0	124.0	0.0	.	27	.	.	Atlas-SNP
MROH2B	133558	hgsc.bcm.edu	hg19	5	41057463	41057463	+	Splice_Site	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	HEATR7B2,bladder,carcinoma,0,1	.	NM_173489	exon9	c.757-1G>A	.	TAGGCTCTAAAGT	.	88.0	31.0	102.0	0.0	.	.	.	.	Atlas-SNP
KIAA0825	285600	hgsc.bcm.edu	hg19	5	93775757	93775757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	KIAA0825	NM_001145678	exon14	c.C2427A	p.N809K	GTTCCAGTTACAA	.	343.0	115.0	357.0	1.0	.	172	.	.	Atlas-SNP
WDR36	134430	hgsc.bcm.edu	hg19	5	110443041	110443041	+	Missense_Mutation	SNP	G	G	C	rs140155952	bycluster;alternate_allele	TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	WDR36	NM_139281	exon12	c.G1397C	p.G466A	ATCAAGGTAAGCT	.	176.0	58.0	182.0	0.0	.	111	.	G|1.000;A|0.000	Atlas-SNP
TRPC7	57113	hgsc.bcm.edu	hg19	5	135692611	135692611	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	TRPC7	NM_001167576	exon2	c.C465T	p.D155D	GTCCTCGTCGTAG	.	76.0	29.0	70.0	0.0	.	126	.	.	Atlas-SNP
POU4F3	5459	hgsc.bcm.edu	hg19	5	145719608	145719608	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	POU4F3	NM_002700	exon2	c.G618A	p.A206A	CCAGGCGGACGTG	.	105.0	38.0	98.0	0.0	.	47	.	.	Atlas-SNP
DCDC2	51473	hgsc.bcm.edu	hg19	6	24291202	24291202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	DCDC2	NM_001195610	exon6	c.G662T	p.S221I	AACTCACTGTAAG	.	136.0	21.0	118.0	0.0	.	53	.	.	Atlas-SNP
ABCF1	23	hgsc.bcm.edu	hg19	6	30558377	30558377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ABCF1	NM_001025091	exon25	c.G2437A	p.E813K	GTGGTGGAGGAGC	.	225.0	85.0	215.0	0.0	.	61	.	.	Atlas-SNP
MUT	4594	hgsc.bcm.edu	hg19	6	49407923	49407923	+	Missense_Mutation	SNP	A	A	T	rs1136145	alternate_allele	TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	MUT	NM_000255	exon11	c.T1952A	p.F651Y	ACCTGGAAAAGAG	.	72.0	25.0	56.0	0.0	.	70	.	.	Atlas-SNP
DDX43	55510	hgsc.bcm.edu	hg19	6	74121953	74121953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	DDX43,middle_lobe,carcinoma,0,1	DDX43	NM_018665	exon11	c.C1306A	p.R436S	GTTCATCGCCTCG	.	119.0	65.0	126.0	0.0	.	69	.	.	Atlas-SNP
FILIP1	27145	hgsc.bcm.edu	hg19	6	76022223	76022223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	FILIP1	NM_015687	exon5	c.C3325T	p.L1109F	AGCGAAGGACAGT	.	228.0	85.0	231.0	0.0	.	173	.	.	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	hg19	6	106552764	106552764	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PRDM1	NM_001198	exon5	c.C729T	p.V243V	GAATGTCCCAAAG	.	112.0	41.0	167.0	0.0	.	195	.	.	Atlas-SNP
ADCY1	107	hgsc.bcm.edu	hg19	7	45750131	45750131	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ADCY1	NM_021116	exon19	c.C2937T	p.I979I	AGGCATCAATGTT	.	95.0	38.0	109.0	0.0	.	187	.	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	hg19	7	84651739	84651739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	SEMA3D	NM_152754	exon11	c.A1382T	p.D461V	TGGCCATCTTCTG	.	139.0	56.0	117.0	0.0	.	177	.	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	hg19	7	87195498	87195498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ABCB1	NM_000927	exon8	c.T590A	p.M197K	GTTGCCATTGACT	.	164.0	57.0	207.0	0.0	.	263	.	.	Atlas-SNP
PSMC2	5701	hgsc.bcm.edu	hg19	7	103008217	103008217	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PSMC2	NM_002803	exon11	c.A1105T	p.R369X	GATATCAGATTTG	.	101.0	25.0	107.0	0.0	.	38	.	.	Atlas-SNP
SMO	6608	hgsc.bcm.edu	hg19	7	128852200	128852200	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	SMO	NM_005631	exon12	c.T2272A	p.W758R	GTGGCATGGGCTC	.	120.0	44.0	147.0	0.0	.	145	.	.	Atlas-SNP
DGKI	9162	hgsc.bcm.edu	hg19	7	137154301	137154301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	DGKI	NM_004717	exon25	c.T2492C	p.L831P	CCATCTAGGAAGC	.	109.0	44.0	131.0	0.0	.	335	.	.	Atlas-SNP
WDR60	55112	hgsc.bcm.edu	hg19	7	158715203	158715203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	WDR60	NM_018051	exon16	c.C2057A	p.P686H	GGCAGCCTTCAGG	.	115.0	47.0	140.0	0.0	.	94	.	.	Atlas-SNP
RHOBTB2	23221	hgsc.bcm.edu	hg19	8	22865129	22865129	+	Silent	SNP	C	C	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	RHOBTB2	NM_001160036	exon7	c.C1437G	p.V479V	CGAGGTCTTTGAT	.	55.0	32.0	94.0	0.0	.	67	.	.	Atlas-SNP
NUGGC	389643	hgsc.bcm.edu	hg19	8	27888861	27888861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	.	NM_001010906	exon15	c.A1807G	p.I603V	CATCTATGTGAGG	.	57.0	10.0	131.0	0.0	.	.	.	.	Atlas-SNP
MCM4	4173	hgsc.bcm.edu	hg19	8	48883070	48883070	+	Splice_Site	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	MCM4	NM_182746	exon12	c.1435-1G>A	.	TATTTAGGGAATT	.	246.0	12.0	114.0	0.0	.	97	.	.	Atlas-SNP
ATAD2	29028	hgsc.bcm.edu	hg19	8	124369923	124369923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ATAD2	NM_014109	exon12	c.C1436T	p.A479V	GCAAGTGCTCTGG	.	237.0	42.0	137.0	0.0	.	160	.	.	Atlas-SNP
BAI1	575	hgsc.bcm.edu	hg19	8	143624960	143624960	+	Splice_Site	SNP	A	A	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	BAI1	NM_001702	exon29	c.4450-2A>G	.	GCCTGCAGAAGAT	.	784.0	258.0	429.0	0.0	.	146	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96070795	96070795	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	WNK2	NM_006648	exon27	c.C6445T	p.L2149L	AACCAGCTGAAGC	.	263.0	37.0	267.0	0.0	.	277	.	.	Atlas-SNP
CELF2	10659	hgsc.bcm.edu	hg19	10	11330509	11330509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	CELF2	NM_006561	exon9	c.A970G	p.S324G	CTCACGAGTCCCG	.	36.0	15.0	43.0	0.0	.	78	.	.	Atlas-SNP
PARG	8505	hgsc.bcm.edu	hg19	10	51028218	51028218	+	Silent	SNP	G	G	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PARG	NM_003631	exon17	c.C2769A	p.L923L	AACAGTGAGTTTC	.	134.0	10.0	142.0	0.0	.	46	.	.	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123903126	123903126	+	Silent	SNP	G	G	C	rs145822203	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	TACC2	NM_206862	exon7	c.G5739C	p.S1913S	TCCCTCGGCTGCA	.	67.0	18.0	89.0	0.0	.	271	.	G|0.999;A|0.001	Atlas-SNP
TACC2	10579	hgsc.bcm.edu	hg19	10	123969922	123969922	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	TACC2	NM_206862	exon9	c.T5982C	p.S1994S	TGGTTCTGAGACA	.	159.0	60.0	175.0	0.0	.	271	.	.	Atlas-SNP
LDHAL6A	160287	hgsc.bcm.edu	hg19	11	18500385	18500385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	LDHAL6A	NM_144972	exon7	c.C967T	p.L323F	GAAACACTTTGGG	.	68.0	23.0	66.0	0.0	.	35	.	.	Atlas-SNP
UBASH3B	84959	hgsc.bcm.edu	hg19	11	122671897	122671897	+	Silent	SNP	T	T	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	UBASH3B	NM_032873	exon11	c.T1452G	p.G484G	CTAAGGTTTACAA	.	121.0	49.0	113.0	0.0	.	73	.	.	Atlas-SNP
NECAP1	25977	hgsc.bcm.edu	hg19	12	8248299	8248299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	NECAP1	NM_015509	exon7	c.G779A	p.S260N	CCTCCAGGTAATG	.	44.0	16.0	48.0	0.0	.	21	.	.	Atlas-SNP
PTPRQ	374462	hgsc.bcm.edu	hg19	12	80889873	80889873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PTPRQ	NM_001145026	exon10	c.A1462G	p.T488A	GTGAGAACTTCAG	.	256.0	31.0	288.0	0.0	.	119	.	.	Atlas-SNP
CCDC60	160777	hgsc.bcm.edu	hg19	12	119909936	119909936	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	CCDC60	NM_178499	exon3	c.T308A	p.I103N	AAAAGATCTCAGA	.	139.0	43.0	161.0	0.0	.	84	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23549129	23549129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ACIN1	NM_001164814	exon6	c.C1589T	p.P530L	TTTAGAGGGAGGG	.	66.0	27.0	92.0	0.0	.	147	.	.	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31613412	31613412	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	HECTD1	NM_015382	exon17	c.A2683T	p.N895Y	TTAGGTTTTCTAA	.	235.0	35.0	247.0	0.0	.	159	.	.	Atlas-SNP
NID2	22795	hgsc.bcm.edu	hg19	14	52535631	52535631	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	NID2	NM_007361	exon1	c.G82C	p.A28P	CCGCGGCCCGCAA	.	225.0	83.0	276.0	0.0	.	201	.	.	Atlas-SNP
YLPM1	56252	hgsc.bcm.edu	hg19	14	75265439	75265439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	YLPM1	NM_019589	exon5	c.C3439T	p.P1147S	GGACCACCTCGAG	.	163.0	61.0	152.0	0.0	.	298	.	.	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	hg19	14	99640842	99640842	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	BCL11B,brain,glioma,0,1	BCL11B	NM_138576	exon4	c.G2331A	p.P777P	CAGGTGCGGGGTG	.	25.0	8.0	21.0	1.0	.	108	.	.	Atlas-SNP
BMF	90427	hgsc.bcm.edu	hg19	15	40398071	40398071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	BMF	NM_001003943	exon3	c.C217A	p.L73I	GGCTGAGAGTCTG	.	89.0	36.0	104.0	0.0	.	18	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54305886	54305886	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	UNC13C	NM_001080534	exon1	c.A786G	p.E262E	TTCTGAACTACGA	.	75.0	25.0	91.0	0.0	.	674	.	.	Atlas-SNP
LRRK1	79705	hgsc.bcm.edu	hg19	15	101593240	101593240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	LRRK1	NM_024652	exon25	c.C3803T	p.A1268V	CTGTGGCCGTCAA	.	129.0	42.0	160.0	0.0	.	310	.	.	Atlas-SNP
RHOT2	89941	hgsc.bcm.edu	hg19	16	723032	723032	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	RHOT2	NM_138769	exon18	c.C1632T	p.R544R	TTGCCGCAAGCAC	.	111.0	37.0	121.0	0.0	.	35	.	.	Atlas-SNP
NAA60	79903	hgsc.bcm.edu	hg19	16	3534783	3534783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	NAA60	NM_001083600	exon6	c.C657A	p.S219R	CCACAGCCTGCTC	.	100.0	40.0	123.0	0.0	.	21	.	.	Atlas-SNP
RPH3AL	9501	hgsc.bcm.edu	hg19	17	63676	63676	+	Silent	SNP	T	T	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	RPH3AL	NM_006987	exon10	c.A915T	p.A305A	TGGAGCTGCGTCA	.	54.0	12.0	83.0	0.0	.	18	.	.	Atlas-SNP
POLR2A	5430	hgsc.bcm.edu	hg19	17	7406937	7406937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	POLR2A	NM_000937	exon19	c.G3067T	p.V1023L	GTGATTGTGAATG	.	93.0	4.0	155.0	0.0	.	157	.	.	Atlas-SNP
ZNF18	7566	hgsc.bcm.edu	hg19	17	11882000	11882000	+	Silent	SNP	G	G	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ZNF18	NM_144680	exon9	c.C924A	p.L308L	ATGCAGGAGCTCC	.	54.0	16.0	43.0	0.0	.	42	.	.	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	hg19	17	35937549	35937549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	SYNRG	NM_007247	exon7	c.G752A	p.G251E	ACACATCCATCTA	.	166.0	61.0	183.0	0.0	.	101	.	.	Atlas-SNP
ACSF2	80221	hgsc.bcm.edu	hg19	17	48539553	48539553	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ACSF2	NM_025149	exon5	c.C516T	p.C172C	GGGCTGCAAGGCC	.	51.0	26.0	63.0	0.0	.	46	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	6993751	6993751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	LAMA1	NM_005559	exon35	c.C4897T	p.L1633F	TAGTGAGCTGGTG	.	52.0	23.0	72.0	0.0	.	458	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21437935	21437935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	LAMA3,NS,carcinoma,0,3	LAMA3	NM_001127717	exon33	c.G4264C	p.G1422R	GGGACCGGGGCTT	.	82.0	41.0	82.0	0.0	.	397	.	.	Atlas-SNP
MEX3D	399664	hgsc.bcm.edu	hg19	19	1556821	1556821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	MEX3D,NS,carcinoma,0,1	MEX3D	NM_203304	exon2	c.G697A	p.V233M	TCTCCACGTCCTC	.	131.0	45.0	197.0	0.0	.	11	.	.	Atlas-SNP
THOP1	7064	hgsc.bcm.edu	hg19	19	2811648	2811648	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	THOP1	NM_003249	exon12	c.G1824C	p.Q608H	CGCCCAGTACTAC	.	89.0	28.0	134.0	0.0	.	49	.	.	Atlas-SNP
ANKRD24	170961	hgsc.bcm.edu	hg19	19	4216727	4216727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ANKRD24	NM_133475	exon18	c.G1570T	p.A524S	GAGGGGGCAGCCT	.	84.0	30.0	131.0	0.0	.	180	.	.	Atlas-SNP
COL5A3	50509	hgsc.bcm.edu	hg19	19	10089907	10089907	+	Silent	SNP	T	T	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	COL5A3	NM_015719	exon39	c.A2775T	p.T925T	TTCTCCTGTCTTT	.	179.0	23.0	205.0	0.0	.	243	.	.	Atlas-SNP
RASGRP4	115727	hgsc.bcm.edu	hg19	19	38912788	38912788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	RASGRP4	NM_001146206	exon2	c.C29T	p.S10F	TGGTGGGACTTCC	.	43.0	13.0	41.0	0.0	.	54	.	.	Atlas-SNP
PNKP	11284	hgsc.bcm.edu	hg19	19	50368637	50368637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PNKP	NM_007254	exon4	c.G245A	p.G82E	TCCAACCCCGGCT	.	120.0	13.0	177.0	0.0	.	71	.	.	Atlas-SNP
BRSK1	84446	hgsc.bcm.edu	hg19	19	55815053	55815053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	BRSK1	NM_032430	exon12	c.T1145C	p.V382A	AGCGTGTGGATTC	.	285.0	98.0	307.0	1.0	.	192	.	.	Atlas-SNP
PTGIS	5740	hgsc.bcm.edu	hg19	20	48130860	48130860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PTGIS	NM_000961	exon7	c.C928T	p.R310C	CTCCGCGGACAGC	.	70.0	23.0	73.0	0.0	.	60	.	.	Atlas-SNP
PRPF6	24148	hgsc.bcm.edu	hg19	20	62612631	62612631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PRPF6	NM_012469	exon1	c.G33T	p.M11I	AGGGATGCCCGCG	.	145.0	48.0	195.0	0.0	.	88	.	.	Atlas-SNP
APOBEC3G	60489	hgsc.bcm.edu	hg19	22	39476966	39476966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	APOBEC3G	NM_021822	exon3	c.A200T	p.E67V	ACCCAGAGATGAG	.	78.0	29.0	97.0	0.0	.	69	.	.	Atlas-SNP
CYP2D6	1565	hgsc.bcm.edu	hg19	22	42525162	42525162	+	Silent	SNP	G	G	C	rs369043970	alternate_allele	TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	CYP2D6	NM_000106	exon3	c.C378G	p.P126P	CCACGCGGGCCCA	.	73.0	21.0	58.0	0.0	.	104	.	.	Atlas-SNP
PPP2R3B	28227	hgsc.bcm.edu	hg19	X	306923	306923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PPP2R3B	NM_013239	exon6	c.A865G	p.S289G	AGGAGCTCCTCCG	.	46.0	10.0	59.0	0.0	.	43	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66766365	66766365	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	AR	NM_000044	exon1	c.C1377T	p.G459G	CGGCGGCGGCGGC	.	472.0	86.0	193.0	0.0	.	249	.	.	Atlas-SNP
CBL	867	hgsc.bcm.edu	hg19	11	119168164	119168165	+	Frame_Shift_Ins	INS	-	-	CATCTAT	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	CBL	NM_005188	exon14	c.2224_2225insCATCTAT	p.P742fs	.	.	93.0	14.0	122.0	0.0	.	408	.	.	Atlas-INDEL
CHUK	1147	hgsc.bcm.edu	hg19	10	101980381	101980381	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	CHUK	NM_001278	exon5	c.439delC	p.P147fs	.	.	101.0	45.0	99.0	0.0	.	71	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74274521	74274524	+	In_Frame_Del	DEL	AAGT	AAGT	-	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ALB	NM_000477	exon4	c.480_482del	p.160_161del	.	.	102.0	30.0	115.0	0.0	.	132	.	.	Atlas-INDEL
ACCSL	390110	hgsc.bcm.edu	hg19	11	44074236	44074242	+	Frame_Shift_Del	DEL	TCTATGG	TCTATGG	-	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	TCTATGG	TCTATGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	ACCSL	NM_001031854	exon6	c.796_802del	p.266_268del	.	.	67.0	14.0	81.0	0.0	.	57	.	.	Atlas-INDEL
TCERG1	10915	hgsc.bcm.edu	hg19	5	145838662	145838663	+	In_Frame_Ins	INS	-	-	GCCCAG	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	TCERG1	NM_006706	exon4	c.654_655insGCCCAG	p.Q218delinsQAQ	.	.	147.0	18.0	156.0	0.0	.	148	.	.	Atlas-INDEL
PCDHB3	56132	hgsc.bcm.edu	hg19	5	140480417	140480418	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-ZS-A9CG-01A-11D-A36X-10	TCGA-ZS-A9CG-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	d44d787d-1a49-474d-9dca-07f1930ff316	823b073f-c65b-4652-8dfc-2957727cbb77	.	PCDHB3	NM_018937	exon1	c.184_185insG	p.R62fs	.	.	257.0	55.0	250.0	0.0	.	208	.	.	Atlas-INDEL
