#version 2.4
## 
## Oncotator v1.8.0.0 | Flat File Reference hg19 | GENCODE v19 EFFECT | UniProt_AAxform 2014_12 | ClinVar 12.03.20 | ESP 6500SI-V2 | ORegAnno UCSC Track | dbSNP build 142 | CCLE_By_GP 09292010 | COSMIC v62_291112 | 1000gp3 20130502 | UniProt_AA 2014_12 | dbNSFP v2.4 | ESP 6500SI-V2 | COSMIC_FusionGenes v62_291112 | gencode_xref_refseq metadata_v19 | CCLE_By_Gene 09292010 | ACHILLES_Lineage_Results 110303 | CGC full_2012-03-15 | UniProt 2014_12 | HumanDNARepairGenes 20110905 | HGNC Sept172014 | COSMIC_Tissue 291112 | Familial_Cancer_Genes 20110905 | TUMORScape 20100104 | Ensembl ICGC MUCOPA | TCGAScape 110405 | MutSig Published Results 20110905 
Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	i_1000gp3_AA	i_1000gp3_AC	i_1000gp3_AF	i_1000gp3_AFR_AF	i_1000gp3_AMR_AF	i_1000gp3_AN	i_1000gp3_CIEND	i_1000gp3_CIPOS	i_1000gp3_CS	i_1000gp3_DP	i_1000gp3_EAS_AF	i_1000gp3_END	i_1000gp3_EUR_AF	i_1000gp3_IMPRECISE	i_1000gp3_MC	i_1000gp3_MEINFO	i_1000gp3_MEND	i_1000gp3_MLEN	i_1000gp3_MSTART	i_1000gp3_NS	i_1000gp3_SAS_AF	i_1000gp3_SVLEN	i_1000gp3_SVTYPE	i_1000gp3_TSD	i_ACHILLES_Lineage_Results_Top_Genes	i_CGC_Cancer Germline Mut	i_CGC_Cancer Molecular Genetics	i_CGC_Cancer Somatic Mut	i_CGC_Cancer Syndrome	i_CGC_Chr	i_CGC_Chr Band	i_CGC_GeneID	i_CGC_Name	i_CGC_Other Germline Mut	i_CGC_Tissue Type	i_COSMIC_n_overlapping_mutations	i_COSMIC_overlapping_mutation_descriptions	i_COSMIC_overlapping_primary_sites	i_Chromosome_hg18	i_ClinVar_ASSEMBLY	i_ClinVar_HGMD_ID	i_ClinVar_SYM	i_ClinVar_TYPE	i_ClinVar_rs	i_ESP_AA	i_ESP_AAC	i_ESP_AA_AC	i_ESP_AA_AGE	i_ESP_AA_GTC	i_ESP_AvgAAsampleReadDepth	i_ESP_AvgEAsampleReadDepth	i_ESP_AvgSampleReadDepth	i_ESP_CA	i_ESP_CDP	i_ESP_CG	i_ESP_CP	i_ESP_Chromosome	i_ESP_DBSNP	i_ESP_DP	i_ESP_EA_AC	i_ESP_EA_AGE	i_ESP_EA_GTC	i_ESP_EXOME_CHIP	i_ESP_FG	i_ESP_GL	i_ESP_GM	i_ESP_GS	i_ESP_GTC	i_ESP_GTS	i_ESP_GWAS_PUBMED	i_ESP_MAF	i_ESP_PH	i_ESP_PP	i_ESP_Position	i_ESP_TAC	i_ESP_TotalAAsamplesCovered	i_ESP_TotalEAsamplesCovered	i_ESP_TotalSamplesCovered	i_End_position_hg18	i_Ensembl_so_accession	i_Ensembl_so_term	i_Entrez_Gene_Id	i_Familial_Cancer_Genes_Reference	i_Familial_Cancer_Genes_Synonym	i_HGNC_Accession Numbers	i_HGNC_CCDS IDs	i_HGNC_Chromosome	i_HGNC_Date Modified	i_HGNC_Date Name Changed	i_HGNC_Date Symbol Changed	i_HGNC_Ensembl Gene ID	i_HGNC_Ensembl ID(supplied by Ensembl)	i_HGNC_Enzyme IDs	i_HGNC_Gene family description	i_HGNC_HGNC ID	i_HGNC_Locus Group	i_HGNC_Locus Type	i_HGNC_Name Synonyms	i_HGNC_OMIM ID(supplied by NCBI)	i_HGNC_Previous Names	i_HGNC_Previous Symbols	i_HGNC_Primary IDs	i_HGNC_Pubmed IDs	i_HGNC_Record Type	i_HGNC_RefSeq(supplied by NCBI)	i_HGNC_Secondary IDs	i_HGNC_Status	i_HGNC_Synonyms	i_HGNC_UCSC ID(supplied by UCSC)	i_HGNC_UniProt ID(supplied by UniProt)	i_HGNC_VEGA IDs	i_HGVS_coding_DNA_change	i_HGVS_genomic_change	i_HGVS_protein_change	i_ORegAnno_bin	i_Start_position_hg18	i_UniProt_alt_uniprot_accessions	i_Variant_Classification	i_Variant_Type	i_annotation_transcript	i_build	i_ccds_id	i_dbNSFP_1000Gp1_AC	i_dbNSFP_1000Gp1_AF	i_dbNSFP_1000Gp1_AFR_AC	i_dbNSFP_1000Gp1_AFR_AF	i_dbNSFP_1000Gp1_AMR_AC	i_dbNSFP_1000Gp1_AMR_AF	i_dbNSFP_1000Gp1_ASN_AC	i_dbNSFP_1000Gp1_ASN_AF	i_dbNSFP_1000Gp1_EUR_AC	i_dbNSFP_1000Gp1_EUR_AF	i_dbNSFP_Ancestral_allele	i_dbNSFP_CADD_phred	i_dbNSFP_CADD_raw	i_dbNSFP_CADD_raw_rankscore	i_dbNSFP_ESP6500_AA_AF	i_dbNSFP_ESP6500_EA_AF	i_dbNSFP_Ensembl_geneid	i_dbNSFP_Ensembl_transcriptid	i_dbNSFP_FATHMM_pred	i_dbNSFP_FATHMM_rankscore	i_dbNSFP_FATHMM_score	i_dbNSFP_GERP++_NR	i_dbNSFP_GERP++_RS	i_dbNSFP_GERP++_RS_rankscore	i_dbNSFP_Interpro_domain	i_dbNSFP_LRT_Omega	i_dbNSFP_LRT_converted_rankscore	i_dbNSFP_LRT_pred	i_dbNSFP_LRT_score	i_dbNSFP_LR_pred	i_dbNSFP_LR_rankscore	i_dbNSFP_LR_score	i_dbNSFP_MutationAssessor_pred	i_dbNSFP_MutationAssessor_rankscore	i_dbNSFP_MutationAssessor_score	i_dbNSFP_MutationTaster_converted_rankscore	i_dbNSFP_MutationTaster_pred	i_dbNSFP_MutationTaster_score	i_dbNSFP_Polyphen2_HDIV_pred	i_dbNSFP_Polyphen2_HDIV_rankscore	i_dbNSFP_Polyphen2_HDIV_score	i_dbNSFP_Polyphen2_HVAR_pred	i_dbNSFP_Polyphen2_HVAR_rankscore	i_dbNSFP_Polyphen2_HVAR_score	i_dbNSFP_RadialSVM_pred	i_dbNSFP_RadialSVM_rankscore	i_dbNSFP_RadialSVM_score	i_dbNSFP_Reliability_index	i_dbNSFP_SIFT_converted_rankscore	i_dbNSFP_SIFT_pred	i_dbNSFP_SIFT_score	i_dbNSFP_SLR_test_statistic	i_dbNSFP_SiPhy_29way_logOdds	i_dbNSFP_SiPhy_29way_logOdds_rankscore	i_dbNSFP_SiPhy_29way_pi	i_dbNSFP_UniSNP_ids	i_dbNSFP_Uniprot_aapos	i_dbNSFP_Uniprot_acc	i_dbNSFP_Uniprot_id	i_dbNSFP_aaalt	i_dbNSFP_aapos	i_dbNSFP_aapos_FATHMM	i_dbNSFP_aapos_SIFT	i_dbNSFP_aaref	i_dbNSFP_cds_strand	i_dbNSFP_codonpos	i_dbNSFP_fold-degenerate	i_dbNSFP_genename	i_dbNSFP_hg18_pos(1-coor)	i_dbNSFP_phastCons100way_vertebrate	i_dbNSFP_phastCons100way_vertebrate_rankscore	i_dbNSFP_phastCons46way_placental	i_dbNSFP_phastCons46way_placental_rankscore	i_dbNSFP_phastCons46way_primate	i_dbNSFP_phastCons46way_primate_rankscore	i_dbNSFP_phyloP100way_vertebrate	i_dbNSFP_phyloP100way_vertebrate_rankscore	i_dbNSFP_phyloP46way_placental	i_dbNSFP_phyloP46way_placental_rankscore	i_dbNSFP_phyloP46way_primate	i_dbNSFP_phyloP46way_primate_rankscore	i_dbNSFP_refcodon	i_entrez_gene_id	i_gc_content_full	i_gencode_transcript_name	i_gencode_transcript_status	i_gencode_transcript_tags	i_gencode_transcript_type	i_gene_type	i_havana_transcript	i_refseq_mrna_id	i_secondary_variant_classification
DUSP27	92235	broad.mit.edu	37	1	167095770	167095770	+	Missense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr1:167095770G>A	ENST00000361200.2	+	6	1568	c.1402G>A	c.(1402-1404)Gca>Aca	p.A468T	DUSP27_ENST00000271385.5_Missense_Mutation_p.A468T|DUSP27_ENST00000485151.1_Intron|DUSP27_ENST00000443333.1_Missense_Mutation_p.A468T			Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27 (putative)	468					protein dephosphorylation (GO:0006470)		protein tyrosine/serine/threonine phosphatase activity (GO:0008138)	p.A468T(1)		NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(4)|kidney(2)|large_intestine(11)|liver(1)|lung(46)|ovary(5)|prostate(5)|skin(4)|upper_aerodigestive_tract(3)	89						GAGGCGCCGCGCAGACTCGAT	0.652																																																1	Substitution - Missense(1)	ovary(1)	1											22.0	22.0	22.0					1																	167095770		2202	4300	6502	165362394	SO:0001583	missense	92235			AF119045	CCDS30932.1	1q22-q24	2008-02-05			ENSG00000198842	ENSG00000198842			25034	protein-coding gene	gene with protein product							Standard	NM_001080426		Approved		uc001geb.1	Q5VZP5	OTTHUMG00000034434	ENST00000361200.2:c.1402G>A	1.37:g.167095770G>A	ENSP00000354483:p.Ala468Thr		165362394	A0AUM4|Q9C074	Missense_Mutation	SNP	ENST00000361200.2	37	CCDS30932.1	.	.	.	.	.	.	.	.	.	.	G	7.926	0.739646	0.15642	.	.	ENSG00000198842	ENST00000361200;ENST00000271385;ENST00000443333	T;T;T	0.03004	4.08;4.08;4.08	5.02	1.26	0.21427	.	0.382941	0.24476	N	0.038182	T	0.00580	0.0019	N	0.08118	0	0.09310	N	1	B	0.10296	0.003	B	0.04013	0.001	T	0.46456	-0.9190	10	0.26408	T	0.33	-1.9731	5.9806	0.19405	0.275:0.0:0.3482:0.3768	.	468	Q5VZP5	DUS27_HUMAN	T	468	ENSP00000354483:A468T;ENSP00000271385:A468T;ENSP00000404874:A468T	ENSP00000271385:A468T	A	+	1	0	DUSP27	165362394	0.193000	0.23313	0.639000	0.29394	0.198000	0.23893	0.345000	0.19979	-0.055000	0.13244	-1.215000	0.01618	GCA		0.652	DUSP27-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000083244.1	NM_001080426	
TET1	80312	broad.mit.edu	37	10	70451227	70451227	+	Missense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr10:70451227G>A	ENST00000373644.4	+	12	6276	c.6067G>A	c.(6067-6069)Gcc>Acc	p.A2023T		NM_030625.2	NP_085128.2	Q8NFU7	TET1_HUMAN	tet methylcytosine dioxygenase 1	2023					chromatin modification (GO:0016568)|DNA demethylation (GO:0080111)|inner cell mass cell differentiation (GO:0001826)|negative regulation of methylation-dependent chromatin silencing (GO:0090310)|positive regulation of transcription from RNA polymerase II promoter (GO:0045944)|protein O-linked glycosylation (GO:0006493)|regulation of DNA methylation (GO:0044030)|stem cell maintenance (GO:0019827)|transcription, DNA-templated (GO:0006351)	nucleus (GO:0005634)	iron ion binding (GO:0005506)|methylcytosine dioxygenase activity (GO:0070579)|structure-specific DNA binding (GO:0043566)|zinc ion binding (GO:0008270)	p.A2023T(1)		breast(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|lung(2)|ovary(5)|prostate(1)|upper_aerodigestive_tract(2)	21						GATTGAGTGTGCCCGGCGAGA	0.507																																																1	Substitution - Missense(1)	ovary(1)	10											104.0	97.0	100.0					10																	70451227		2203	4300	6503	70121233	SO:0001583	missense	80312			AF430147	CCDS7281.1	10q21	2014-02-18	2011-09-30	2008-03-12	ENSG00000138336	ENSG00000138336			29484	protein-coding gene	gene with protein product	"""leukemia-associated protein with a CXXC domain"", ""ten-eleven translocation-1"""	607790	"""CXXC zinc finger 6"", ""tet oncogene 1"""	CXXC6		12124344, 12646957	Standard	NM_030625		Approved	LCX, KIAA1676, bA119F7.1	uc001jok.4	Q8NFU7	OTTHUMG00000018359	ENST00000373644.4:c.6067G>A	10.37:g.70451227G>A	ENSP00000362748:p.Ala2023Thr		70121233	Q5VUP7|Q7Z6B6|Q8TCR1|Q9C0I7	Missense_Mutation	SNP	ENST00000373644.4	37	CCDS7281.1	.	.	.	.	.	.	.	.	.	.	G	28.9	4.960196	0.92791	.	.	ENSG00000138336	ENST00000373644	T	0.21031	2.03	5.6	5.6	0.85130	Methylcytosine dioxygenase TET, double-stranded beta helix fold domain (1);	0.103999	0.64402	D	0.000003	T	0.51432	0.1674	M	0.77313	2.365	0.58432	D	0.999991	D	0.89917	1.0	D	0.91635	0.999	T	0.52215	-0.8605	10	0.87932	D	0	.	19.9855	0.97347	0.0:0.0:1.0:0.0	.	2023	Q8NFU7	TET1_HUMAN	T	2023	ENSP00000362748:A2023T	ENSP00000362748:A2023T	A	+	1	0	TET1	70121233	1.000000	0.71417	0.985000	0.45067	0.468000	0.32798	9.378000	0.97191	2.806000	0.96561	0.655000	0.94253	GCC		0.507	TET1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000048354.1	NM_030625	
CCAR1	55749	broad.mit.edu	37	10	70547778	70547778	+	Missense_Mutation	SNP	C	C	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr10:70547778C>T	ENST00000265872.6	+	22	3094	c.2975C>T	c.(2974-2976)tCt>tTt	p.S992F	CCAR1_ENST00000535016.1_Missense_Mutation_p.S977F|CCAR1_ENST00000543719.1_Missense_Mutation_p.S977F	NM_001282959.1|NM_001282960.1|NM_018237.2	NP_001269888.1|NP_001269889.1|NP_060707.2	Q8IX12	CCAR1_HUMAN	cell division cycle and apoptosis regulator 1	992					apoptotic process (GO:0006915)|cell cycle (GO:0007049)|gene expression (GO:0010467)|mRNA splicing, via spliceosome (GO:0000398)|regulation of transcription, DNA-templated (GO:0006355)|RNA splicing (GO:0008380)|transcription, DNA-templated (GO:0006351)	cytoplasm (GO:0005737)|nucleoplasm (GO:0005654)	ligand-dependent nuclear receptor transcription coactivator activity (GO:0030374)|poly(A) RNA binding (GO:0044822)	p.S992F(1)		NS(1)|autonomic_ganglia(1)|breast(4)|central_nervous_system(3)|cervix(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(9)|lung(13)|ovary(7)|skin(3)	56						CATGAAGAGTCTGAGTCATTG	0.308																																																1	Substitution - Missense(1)	ovary(1)	10											73.0	76.0	75.0					10																	70547778		2203	4300	6503	70217784	SO:0001583	missense	55749			AY249140	CCDS7282.1, CCDS60547.1	10q22.1	2004-02-19			ENSG00000060339	ENSG00000060339			24236	protein-coding gene	gene with protein product		612569				12816952	Standard	NM_018237		Approved	FLJ10590, CARP-1, CARP1	uc001joo.3	Q8IX12	OTTHUMG00000018361	ENST00000265872.6:c.2975C>T	10.37:g.70547778C>T	ENSP00000265872:p.Ser992Phe		70217784	A0JLT7|A1L4P7|A8K9D4|B4DNP8|B4DRK8|Q32NE3|Q5EBM3|Q5VUP6|Q6PIZ0|Q6X935|Q9H8N4|Q9NVA7|Q9NVQ0|Q9NWM6	Missense_Mutation	SNP	ENST00000265872.6	37	CCDS7282.1	.	.	.	.	.	.	.	.	.	.	C	16.65	3.181481	0.57800	.	.	ENSG00000060339	ENST00000265872;ENST00000535016;ENST00000543719;ENST00000539539	T;T;T;T	0.00363	7.83;7.83;7.83;7.83	5.41	3.5	0.40072	.	0.273216	0.38005	N	0.001844	T	0.00412	0.0013	L	0.43152	1.355	0.35413	D	0.792579	D	0.61080	0.989	P	0.56700	0.804	T	0.79524	-0.1768	10	0.59425	D	0.04	-2.9755	10.0991	0.42493	0.0:0.6686:0.2609:0.0705	.	992	Q8IX12	CCAR1_HUMAN	F	992;977;977;977	ENSP00000265872:S992F;ENSP00000441820:S977F;ENSP00000445254:S977F;ENSP00000439252:S977F	ENSP00000265872:S992F	S	+	2	0	CCAR1	70217784	0.005000	0.15991	0.844000	0.33320	0.965000	0.64279	1.286000	0.33273	0.599000	0.29845	0.563000	0.77884	TCT		0.308	CCAR1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000048356.2	NM_018237	
SHISA2	387914	broad.mit.edu	37	13	26620663	26620663	+	Silent	SNP	C	C	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr13:26620663C>T	ENST00000319420.3	-	2	931	c.876G>A	c.(874-876)gcG>gcA	p.A292A		NM_001007538.1	NP_001007539.1	Q6UWI4	SHSA2_HUMAN	shisa family member 2	292					multicellular organismal development (GO:0007275)	endoplasmic reticulum (GO:0005783)|integral component of membrane (GO:0016021)		p.A292A(1)		central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(7)|ovary(1)|prostate(2)|skin(1)	17						ATACAGTCACCGCTGGGTACA	0.557																																																1	Substitution - coding silent(1)	ovary(1)	13											83.0	76.0	79.0					13																	26620663		2203	4300	6503	25518663	SO:0001819	synonymous_variant	387914				CCDS31951.1	13q12.13	2013-07-31	2013-07-31	2008-04-01	ENSG00000180730	ENSG00000180730		"""Shisa homologs"""	20366	protein-coding gene	gene with protein product			"""chromosome 13 open reading frame 13"", ""transmembrane protein 46"", ""shisa homolog 2 (Xenopus laevis)"""	C13orf13, TMEM46			Standard	NM_001007538		Approved	bA398O19.2, PRO28631, WGAR9166, hShisa	uc001uqm.1	Q6UWI4	OTTHUMG00000016612	ENST00000319420.3:c.876G>A	13.37:g.26620663C>T			25518663	B9EH70|Q5W0G8	Silent	SNP	ENST00000319420.3	37	CCDS31951.1																																																																																				0.557	SHISA2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000044239.2	NM_001007538	
CGNL1	84952	broad.mit.edu	37	15	57730517	57730517	+	Missense_Mutation	SNP	C	C	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr15:57730517C>T	ENST00000281282.5	+	2	398	c.320C>T	c.(319-321)cCa>cTa	p.P107L		NM_001252335.1|NM_032866.4	NP_001239264.1|NP_116255.2	Q0VF96	CGNL1_HUMAN	cingulin-like 1	107	Head.					myosin complex (GO:0016459)|tight junction (GO:0005923)	motor activity (GO:0003774)	p.P107L(1)		autonomic_ganglia(1)|breast(1)|central_nervous_system(2)|endometrium(5)|kidney(4)|large_intestine(12)|lung(14)|ovary(4)|prostate(4)|skin(10)|stomach(2)|upper_aerodigestive_tract(1)	60				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		CCAGAAAACCCATACGCCCAG	0.498																																																1	Substitution - Missense(1)	ovary(1)	15											44.0	48.0	47.0					15																	57730517		2192	4292	6484	55517809	SO:0001583	missense	84952			AY274808	CCDS10161.1	15q21.3	2011-06-10			ENSG00000128849	ENSG00000128849			25931	protein-coding gene	gene with protein product		607856				11214970	Standard	NM_001252335		Approved	FLJ14957, JACOP, KIAA1749, paracingulin	uc002aeg.3	Q0VF96	OTTHUMG00000166485	ENST00000281282.5:c.320C>T	15.37:g.57730517C>T	ENSP00000281282:p.Pro107Leu		55517809	Q05BZ4|Q52LR0|Q695C7|Q7Z2L3|Q96JV2|Q96MN6|Q9C0B4	Missense_Mutation	SNP	ENST00000281282.5	37	CCDS10161.1	.	.	.	.	.	.	.	.	.	.	C	7.707	0.694429	0.15039	.	.	ENSG00000128849	ENST00000281282	T	0.78364	-1.17	4.88	4.88	0.63580	.	0.141249	0.33040	N	0.005359	T	0.74574	0.3734	M	0.66939	2.045	0.47276	D	0.999377	P	0.49090	0.919	B	0.40165	0.321	T	0.79117	-0.1935	10	0.62326	D	0.03	-19.7895	12.8111	0.57639	0.1744:0.8255:0.0:0.0	.	107	Q0VF96	CGNL1_HUMAN	L	107	ENSP00000281282:P107L	ENSP00000281282:P107L	P	+	2	0	CGNL1	55517809	0.992000	0.36948	0.890000	0.34922	0.010000	0.07245	3.665000	0.54532	2.522000	0.85027	0.655000	0.94253	CCA		0.498	CGNL1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000255482.2	NM_032866	
MCTP2	55784	broad.mit.edu	37	15	94910908	94910908	+	Missense_Mutation	SNP	G	G	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr15:94910908G>T	ENST00000357742.4	+	10	1376	c.1376G>T	c.(1375-1377)gGg>gTg	p.G459V	MCTP2_ENST00000331706.4_Missense_Mutation_p.G47V|MCTP2_ENST00000451018.3_Missense_Mutation_p.G459V|MCTP2_ENST00000557742.1_Missense_Mutation_p.G47V	NM_018349.3	NP_060819.3	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2	459					calcium-mediated signaling (GO:0019722)	integral component of membrane (GO:0016021)|membrane (GO:0016020)	calcium ion binding (GO:0005509)	p.G459V(1)		autonomic_ganglia(1)|breast(4)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(12)|liver(1)|lung(12)|ovary(1)|pancreas(1)|skin(9)|stomach(2)	49	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AGCTGTCTGGGGGCTCTCCTT	0.527																																																1	Substitution - Missense(1)	ovary(1)	15											85.0	87.0	86.0					15																	94910908		2197	4298	6495	92711912	SO:0001583	missense	55784			AK002037	CCDS32338.1, CCDS53975.1, CCDS53976.1	15q26.2	2006-02-08				ENSG00000140563			25636	protein-coding gene	gene with protein product						15528213	Standard	NM_018349		Approved	FLJ11175, FLJ33303	uc002btj.3	Q6DN12		ENST00000357742.4:c.1376G>T	15.37:g.94910908G>T	ENSP00000350377:p.Gly459Val		92711912	A2RRC2|C6G483|C6G484|Q49AB0|Q8TAX2|Q9NUS2|Q9NUW7	Missense_Mutation	SNP	ENST00000357742.4	37	CCDS32338.1	.	.	.	.	.	.	.	.	.	.	G	23.1	4.376368	0.82682	.	.	ENSG00000140563	ENST00000451018;ENST00000331706;ENST00000357742	T;T;T	0.78707	1.77;-1.2;1.77	5.33	5.33	0.75918	C2 calcium/lipid-binding domain, CaLB (1);	0.050716	0.85682	D	0.000000	D	0.88724	0.6514	M	0.78049	2.395	0.80722	D	1	D;D;D	0.89917	0.999;1.0;1.0	D;D;D	0.97110	0.982;1.0;1.0	D	0.89878	0.4028	10	0.87932	D	0	.	19.0292	0.92948	0.0:0.0:1.0:0.0	.	459;47;459	Q6DN12-2;Q6DN12-4;Q6DN12	.;.;MCTP2_HUMAN	V	459;47;459	ENSP00000395109:G459V;ENSP00000329646:G47V;ENSP00000350377:G459V	ENSP00000329646:G47V	G	+	2	0	MCTP2	92711912	1.000000	0.71417	0.804000	0.32291	0.991000	0.79684	8.162000	0.89657	2.490000	0.84030	0.650000	0.86243	GGG		0.527	MCTP2-002	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000415060.3	NM_018349	
TP53	7157	broad.mit.edu	37	17	7576897	7576897	+	Nonsense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr17:7576897G>A	ENST00000269305.4	-	9	1138	c.949C>T	c.(949-951)Cag>Tag	p.Q317*	TP53_ENST00000420246.2_Nonsense_Mutation_p.Q317*|TP53_ENST00000359597.4_Nonsense_Mutation_p.Q317*|TP53_ENST00000455263.2_Nonsense_Mutation_p.Q317*|TP53_ENST00000413465.2_Intron|TP53_ENST00000574684.1_5'Flank|TP53_ENST00000445888.2_Nonsense_Mutation_p.Q317*	NM_000546.5|NM_001126112.2|NM_001126118.1|NM_001276760.1|NM_001276761.1	NP_000537.3|NP_001119584.1|NP_001119590.1|NP_001263689.1|NP_001263690.1	P04637	P53_HUMAN	tumor protein p53	317	Interaction with CARM1.|Interaction with HIPK1. {ECO:0000250}.		Q -> H (in a kidney cancer with no family history; germline mutation and in a sporadic cancer; somatic mutation).|Q -> K (in sporadic cancers; somatic mutation).|Q -> L (in a sporadic cancer; somatic mutation).|Q -> P (in a sporadic cancer; somatic mutation).|Q -> R (in sporadic cancers; somatic mutation).		apoptotic process (GO:0006915)|B cell lineage commitment (GO:0002326)|base-excision repair (GO:0006284)|blood coagulation (GO:0007596)|cell aging (GO:0007569)|cell cycle arrest (GO:0007050)|cell differentiation (GO:0030154)|cell proliferation (GO:0008283)|cellular protein localization (GO:0034613)|cellular response to DNA damage stimulus (GO:0006974)|cellular response to drug (GO:0035690)|cellular response to glucose starvation (GO:0042149)|cellular response to hypoxia (GO:0071456)|cellular response to ionizing radiation (GO:0071479)|cellular response to UV (GO:0034644)|cerebellum development (GO:0021549)|chromatin assembly (GO:0031497)|determination of adult lifespan (GO:0008340)|DNA damage response, signal transduction by p53 class mediator (GO:0030330)|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest (GO:0006977)|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (GO:0006978)|DNA strand renaturation (GO:0000733)|double-strand break repair (GO:0006302)|embryonic organ development (GO:0048568)|ER overload response (GO:0006983)|gastrulation (GO:0007369)|in utero embryonic development (GO:0001701)|intrinsic apoptotic signaling pathway (GO:0097193)|intrinsic apoptotic signaling pathway by p53 class mediator (GO:0072332)|intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (GO:0042771)|mitotic cell cycle arrest (GO:0071850)|mitotic G1 DNA damage checkpoint (GO:0031571)|multicellular organism growth (GO:0035264)|multicellular organismal development (GO:0007275)|necroptotic process (GO:0070266)|negative regulation of apoptotic process (GO:0043066)|negative regulation of cell growth (GO:0030308)|negative regulation of cell proliferation (GO:0008285)|negative regulation of DNA replication (GO:0008156)|negative regulation of fibroblast proliferation (GO:0048147)|negative regulation of helicase activity (GO:0051097)|negative regulation of macromitophagy (GO:1901525)|negative regulation of neuroblast proliferation (GO:0007406)|negative regulation of reactive oxygen species metabolic process (GO:2000378)|negative regulation of transcription from RNA polymerase II promoter (GO:0000122)|negative regulation of transcription, DNA-templated (GO:0045892)|negative regulation of transforming growth factor beta receptor signaling pathway (GO:0030512)|neuron apoptotic process (GO:0051402)|Notch signaling pathway (GO:0007219)|nucleotide-excision repair (GO:0006289)|oligodendrocyte apoptotic process (GO:0097252)|oxidative stress-induced premature senescence (GO:0090403)|positive regulation of apoptotic process (GO:0043065)|positive regulation of cardiac muscle cell apoptotic process (GO:0010666)|positive regulation of cell aging (GO:0090343)|positive regulation of cell cycle arrest (GO:0071158)|positive regulation of histone deacetylation (GO:0031065)|positive regulation of intrinsic apoptotic signaling pathway (GO:2001244)|positive regulation of mitochondrial membrane permeability (GO:0035794)|positive regulation of neuron apoptotic process (GO:0043525)|positive regulation of peptidyl-tyrosine phosphorylation (GO:0050731)|positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway (GO:1900740)|positive regulation of protein oligomerization (GO:0032461)|positive regulation of reactive oxygen species metabolic process (GO:2000379)|positive regulation of release of cytochrome c from mitochondria (GO:0090200)|positive regulation of thymocyte apoptotic process (GO:0070245)|positive regulation of transcription from RNA polymerase II promoter (GO:0045944)|positive regulation of transcription, DNA-templated (GO:0045893)|protein complex assembly (GO:0006461)|protein import into nucleus, translocation (GO:0000060)|protein localization (GO:0008104)|protein tetramerization (GO:0051262)|Ras protein signal transduction (GO:0007265)|regulation of apoptotic process (GO:0042981)|regulation of mitochondrial membrane permeability (GO:0046902)|regulation of mitochondrial membrane permeability involved in apoptotic process (GO:1902108)|regulation of tissue remodeling (GO:0034103)|regulation of transcription, DNA-templated (GO:0006355)|release of cytochrome c from mitochondria (GO:0001836)|replicative senescence (GO:0090399)|response to antibiotic (GO:0046677)|response to gamma radiation (GO:0010332)|response to ischemia (GO:0002931)|response to salt stress (GO:0009651)|response to X-ray (GO:0010165)|rRNA transcription (GO:0009303)|somitogenesis (GO:0001756)|T cell differentiation in thymus (GO:0033077)|T cell lineage commitment (GO:0002360)|T cell proliferation involved in immune response (GO:0002309)|transforming growth factor beta receptor signaling pathway (GO:0007179)|viral process (GO:0016032)	chromatin (GO:0000785)|cytoplasm (GO:0005737)|cytosol (GO:0005829)|endoplasmic reticulum (GO:0005783)|mitochondrial matrix (GO:0005759)|mitochondrion (GO:0005739)|nuclear chromatin (GO:0000790)|nuclear matrix (GO:0016363)|nucleolus (GO:0005730)|nucleoplasm (GO:0005654)|nucleus (GO:0005634)|PML body (GO:0016605)|protein complex (GO:0043234)|replication fork (GO:0005657)	ATP binding (GO:0005524)|chaperone binding (GO:0051087)|chromatin binding (GO:0003682)|copper ion binding (GO:0005507)|damaged DNA binding (GO:0003684)|DNA binding (GO:0003677)|enzyme binding (GO:0019899)|histone acetyltransferase binding (GO:0035035)|histone deacetylase regulator activity (GO:0035033)|identical protein binding (GO:0042802)|p53 binding (GO:0002039)|protease binding (GO:0002020)|protein heterodimerization activity (GO:0046982)|protein kinase binding (GO:0019901)|protein N-terminus binding (GO:0047485)|protein phosphatase 2A binding (GO:0051721)|protein phosphatase binding (GO:0019903)|receptor tyrosine kinase binding (GO:0030971)|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001077)|RNA polymerase II core promoter sequence-specific DNA binding (GO:0000979)|RNA polymerase II transcription factor binding (GO:0001085)|RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription (GO:0001228)|sequence-specific DNA binding transcription factor activity (GO:0003700)|transcription factor binding (GO:0008134)|transcription regulatory region DNA binding (GO:0044212)|ubiquitin protein ligase binding (GO:0031625)|zinc ion binding (GO:0008270)	p.Q317*(29)|p.0?(8)|p.Q317K(3)|p.S315fs*22(1)|p.?(1)|p.S314fs*25(1)|p.L308fs*15(1)|p.Q317fs*28(1)|p.Q317fs*45(1)		NS(16)|adrenal_gland(37)|autonomic_ganglia(16)|biliary_tract(273)|bone(108)|breast(2530)|central_nervous_system(1264)|cervix(68)|endometrium(223)|eye(24)|fallopian_tube(1)|gastrointestinal_tract_(site_indeterminate)(1)|genital_tract(16)|haematopoietic_and_lymphoid_tissue(1301)|kidney(96)|large_intestine(5124)|liver(897)|lung(2388)|meninges(5)|oesophagus(1473)|ovary(1659)|pancreas(452)|penis(10)|peritoneum(33)|pituitary(4)|placenta(1)|pleura(3)|prostate(235)|salivary_gland(43)|skin(791)|small_intestine(14)|soft_tissue(220)|stomach(1158)|testis(11)|thymus(21)|thyroid(54)|upper_aerodigestive_tract(2271)|urinary_tract(1259)|vagina(6)|vulva(79)	24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)	Acetylsalicylic acid(DB00945)	TTCTTTGGCTGGGGAGAGGAG	0.473		111	"""Mis, N, F"""		"""breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types"""	"""breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types"""		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)																											Pancreas(47;798 1329 9957 10801)	yes	Rec	yes	Li-Fraumeni syndrome	17	17p13	7157	tumor protein p53		"""L, E, M, O"""	46	Substitution - Nonsense(29)|Whole gene deletion(8)|Deletion - Frameshift(4)|Substitution - Missense(3)|Insertion - Frameshift(1)|Unknown(1)	breast(7)|large_intestine(5)|skin(4)|bone(4)|upper_aerodigestive_tract(3)|haematopoietic_and_lymphoid_tissue(3)|urinary_tract(3)|ovary(3)|central_nervous_system(2)|lung(2)|NS(2)|pancreas(2)|thyroid(1)|stomach(1)|soft_tissue(1)|liver(1)|endometrium(1)|oesophagus(1)	17											129.0	119.0	122.0					17																	7576897		2203	4300	6503	7517622	SO:0001587	stop_gained	7157	Familial Cancer Database	Familial Osteogenic Sarcoma;LFS, SBLA syndrome (Sarcoma Breast Leukemia Adrenal cancer), incl.: Cancer with In Vitro Radioresistence, Familial, Li-Fraumeni-like s.;BRCAX;Familial Adrenocortical Carcinoma;	AF307851	CCDS11118.1, CCDS45605.1, CCDS45606.1, CCDS73963.1, CCDS73964.1, CCDS73965.1, CCDS73966.1, CCDS73967.1, CCDS73968.1, CCDS73969.1, CCDS73970.1, CCDS73971.1	17p13.1	2014-09-17	2008-01-16		ENSG00000141510	ENSG00000141510			11998	protein-coding gene	gene with protein product	"""Li-Fraumeni syndrome"""	191170				6396087, 3456488, 2047879	Standard	NM_001126115		Approved	p53, LFS1	uc002gij.3	P04637	OTTHUMG00000162125	ENST00000269305.4:c.949C>T	17.37:g.7576897G>A	ENSP00000269305:p.Gln317*		7517622	Q15086|Q15087|Q15088|Q16535|Q16807|Q16808|Q16809|Q16810|Q16811|Q16848|Q2XN98|Q3LRW1|Q3LRW2|Q3LRW3|Q3LRW4|Q3LRW5|Q86UG1|Q8J016|Q99659|Q9BTM4|Q9HAQ8|Q9NP68|Q9NPJ2|Q9NZD0|Q9UBI2|Q9UQ61	Nonsense_Mutation	SNP	ENST00000269305.4	37	CCDS11118.1	.	.	.	.	.	.	.	.	.	.	G	29.7	5.032676	0.93575	.	.	ENSG00000141510	ENST00000359597;ENST00000269305;ENST00000455263;ENST00000420246;ENST00000445888;ENST00000396473;ENST00000509690	.	.	.	4.96	2.84	0.33178	.	1.146690	0.06159	N	0.675692	.	.	.	.	.	.	0.80722	A	1	.	.	.	.	.	.	.	.	.	.	0.06099	T	0.92	-0.0856	5.403	0.16306	0.1029:0.0:0.6855:0.2116	.	.	.	.	X	317;317;317;317;317;306;185	.	ENSP00000269305:Q317X	Q	-	1	0	TP53	7517622	0.001000	0.12720	0.022000	0.16811	0.871000	0.50021	0.741000	0.26202	1.318000	0.45170	0.561000	0.74099	CAG		0.473	TP53-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000367397.1	NM_000546	
DHX8	1659	broad.mit.edu	37	17	41570102	41570102	+	Missense_Mutation	SNP	G	G	A	rs377681392		TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr17:41570102G>A	ENST00000262415.3	+	6	629	c.557G>A	c.(556-558)cGa>cAa	p.R186Q	DHX8_ENST00000540306.1_Missense_Mutation_p.R186Q	NM_004941.1	NP_004932.1	Q14562	DHX8_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 8	186	Arg/Ser-rich (RS domain).				ATP catabolic process (GO:0006200)|mRNA splicing, via spliceosome (GO:0000398)|RNA processing (GO:0006396)|RNA splicing (GO:0008380)	catalytic step 2 spliceosome (GO:0071013)|nucleus (GO:0005634)|spliceosomal complex (GO:0005681)	ATP binding (GO:0005524)|ATP-dependent RNA helicase activity (GO:0004004)|identical protein binding (GO:0042802)|poly(A) RNA binding (GO:0044822)	p.R186Q(1)		breast(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(9)|lung(17)|ovary(2)|pancreas(1)|prostate(1)|skin(3)|urinary_tract(1)	42		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.08)		aaccgagatcgagacagagat	0.483																																					NSCLC(56;1548 1661 49258 49987)											1	Substitution - Missense(1)	ovary(1)	17						G	GLN/ARG	0,4406		0,0,2203	107.0	103.0	104.0		557	5.2	0.2	17		104	1,8599	1.2+/-3.3	0,1,4299	no	missense	DHX8	NM_004941.1	43	0,1,6502	AA,AG,GG		0.0116,0.0,0.0077	probably-damaging	186/1221	41570102	1,13005	2203	4300	6503	38925628	SO:0001583	missense	1659			D50487	CCDS11464.1	17q21.31	2005-08-19	2003-06-13	2003-06-20		ENSG00000067596		"""DEAH-boxes"""	2749	protein-coding gene	gene with protein product		600396	"""DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (RNA helicase)"""	DDX8		7935475	Standard	NM_004941		Approved	HRH1, PRP22, PRPF22	uc002idu.1	Q14562		ENST00000262415.3:c.557G>A	17.37:g.41570102G>A	ENSP00000262415:p.Arg186Gln		38925628		Missense_Mutation	SNP	ENST00000262415.3	37	CCDS11464.1	.	.	.	.	.	.	.	.	.	.	G	10.43	1.346842	0.24426	0.0	1.16E-4	ENSG00000067596	ENST00000540306;ENST00000262415	T;T	0.58652	0.32;0.32	5.18	5.18	0.71444	.	0.000000	0.41938	D	0.000783	T	0.62841	0.2461	L	0.32530	0.975	0.58432	D	0.999996	D;D	0.69078	0.997;0.983	D;P	0.66847	0.947;0.885	T	0.55742	-0.8093	10	0.13853	T	0.58	.	15.8583	0.79000	0.0:0.0:1.0:0.0	.	186;186	F5H658;Q14562	.;DHX8_HUMAN	Q	186	ENSP00000437886:R186Q;ENSP00000262415:R186Q	ENSP00000262415:R186Q	R	+	2	0	DHX8	38925628	0.893000	0.30496	0.167000	0.22817	0.239000	0.25481	6.052000	0.71080	2.409000	0.81822	0.561000	0.74099	CGA		0.483	DHX8-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000453485.1		
MEP1B	4225	broad.mit.edu	37	18	29787335	29787335	+	Missense_Mutation	SNP	C	C	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr18:29787335C>T	ENST00000269202.6	+	8	715	c.668C>T	c.(667-669)aCa>aTa	p.T223I	MEP1B_ENST00000581447.1_Missense_Mutation_p.T223I	NM_005925.2	NP_005916.2	Q16820	MEP1B_HUMAN	meprin A, beta	223	Metalloprotease.				digestion (GO:0007586)|inflammatory response (GO:0006954)	extracellular space (GO:0005615)|integral component of plasma membrane (GO:0005887)|plasma membrane (GO:0005886)	metalloendopeptidase activity (GO:0004222)|zinc ion binding (GO:0008270)	p.T223I(1)		cervix(1)|endometrium(1)|kidney(2)|large_intestine(6)|lung(9)|ovary(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	23						ACAGAGCCGACAATTGTCACA	0.398																																																1	Substitution - Missense(1)	ovary(1)	18											73.0	68.0	70.0					18																	29787335		1918	4124	6042	28041333	SO:0001583	missense	4225			X81333	CCDS45846.1	18q12.2-q12.3	2003-12-17				ENSG00000141434	3.4.24.18		7020	protein-coding gene	gene with protein product		600389				7774936	Standard	NM_005925		Approved		uc002kxj.4	Q16820		ENST00000269202.6:c.668C>T	18.37:g.29787335C>T	ENSP00000269202:p.Thr223Ile		28041333	B7ZM35|B9EGL6|Q670J1	Missense_Mutation	SNP	ENST00000269202.6	37	CCDS45846.1	.	.	.	.	.	.	.	.	.	.	C	18.51	3.638744	0.67130	.	.	ENSG00000141434	ENST00000269202	T	0.78126	-1.15	5.6	5.6	0.85130	Peptidase M12A, astacin (1);Metallopeptidase, catalytic domain (1);	0.000000	0.85682	D	0.000000	D	0.91925	0.7443	H	0.94542	3.55	0.80722	D	1	D	0.89917	1.0	D	0.97110	1.0	D	0.93642	0.6965	10	0.87932	D	0	-18.2579	19.6094	0.95599	0.0:1.0:0.0:0.0	.	223	Q16820	MEP1B_HUMAN	I	223	ENSP00000269202:T223I	ENSP00000269202:T223I	T	+	2	0	MEP1B	28041333	1.000000	0.71417	0.076000	0.20297	0.174000	0.22865	7.818000	0.86416	2.647000	0.89833	0.591000	0.81541	ACA		0.398	MEP1B-001	KNOWN	NAGNAG_splice_site|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000447755.1	NM_005925	
C19orf47	126526	broad.mit.edu	37	19	40834416	40834416	+	Missense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr19:40834416G>A	ENST00000582783.1	-	6	466	c.454C>T	c.(454-456)Cca>Tca	p.P152S	C19orf47_ENST00000392035.2_Missense_Mutation_p.P85S	NM_001256440.1	NP_001243369.1	Q8N9M1	CS047_HUMAN	chromosome 19 open reading frame 47	152						nucleus (GO:0005634)		p.P85S(1)		endometrium(5)|kidney(2)|lung(7)|ovary(3)|prostate(1)|skin(1)|urinary_tract(1)	20			Lung(22;0.000636)			GTGCTGGGTGGAGAGTCATGG	0.602																																																1	Substitution - Missense(1)	ovary(1)	19											178.0	181.0	180.0					19																	40834416		2203	4300	6503	45526256	SO:0001583	missense	126526			AL834131	CCDS58662.1	19q13.2	2012-07-20			ENSG00000160392	ENSG00000160392			26723	protein-coding gene	gene with protein product						12477932	Standard	NM_001256440		Approved	FLJ36888	uc002oni.5	Q8N9M1	OTTHUMG00000179028	ENST00000582783.1:c.454C>T	19.37:g.40834416G>A	ENSP00000463159:p.Pro152Ser		45526256	Q8IZ33|Q8N0V9	Missense_Mutation	SNP	ENST00000582783.1	37	CCDS58662.1	.	.	.	.	.	.	.	.	.	.	G	20.5	4.005708	0.74932	.	.	ENSG00000160392	ENST00000357884;ENST00000392035	D	0.99582	-6.22	5.25	5.25	0.73442	.	0.000000	0.85682	D	0.000000	D	0.99483	0.9816	M	0.66939	2.045	0.80722	D	1	D	0.89917	1.0	D	0.91635	0.999	D	0.99655	1.0992	10	0.32370	T	0.25	0.1439	17.9782	0.89132	0.0:0.0:1.0:0.0	.	152	Q8N9M1	CS047_HUMAN	S	152;85	ENSP00000375889:P85S	ENSP00000350556:P152S	P	-	1	0	C19orf47	45526256	1.000000	0.71417	1.000000	0.80357	0.181000	0.23173	9.091000	0.94151	2.623000	0.88846	0.462000	0.41574	CCA		0.602	C19orf47-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000444488.1	NM_178830	
ZNF331	55422	broad.mit.edu	37	19	54080392	54080392	+	Missense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr19:54080392G>A	ENST00000253144.9	+	7	1911	c.578G>A	c.(577-579)gGg>gAg	p.G193E	ZNF331_ENST00000511154.1_Missense_Mutation_p.G193E|ZNF331_ENST00000511593.2_Missense_Mutation_p.G193E|ZNF331_ENST00000411977.2_Missense_Mutation_p.G193E|ZNF331_ENST00000513265.1_Intron|ZNF331_ENST00000449416.1_Missense_Mutation_p.G193E|ZNF331_ENST00000512387.1_Missense_Mutation_p.G193E|ZNF331_ENST00000513999.1_Missense_Mutation_p.G193E	NM_001253801.1|NM_018555.5	NP_001240730.1|NP_061025.5	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	193					regulation of transcription, DNA-templated (GO:0006355)|transcription, DNA-templated (GO:0006351)	nucleus (GO:0005634)	DNA binding (GO:0003677)|zinc ion binding (GO:0008270)	p.G193E(1)		NS(1)|large_intestine(1)|lung(1)|ovary(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	10				GBM - Glioblastoma multiforme(134;0.00555)		AAAGACTGTGGGAAGGCTTTT	0.438			T	?	follicular thyroid adenoma																																		Dom	yes		19	19q13.3-q13.4	55422	zinc finger protein 331		E	1	Substitution - Missense(1)	ovary(1)	19											63.0	70.0	68.0					19																	54080392		2203	4300	6503	58772204	SO:0001583	missense	55422			AF251515	CCDS33102.1	19q13	2013-12-10				ENSG00000130844		"""Zinc fingers, C2H2-type"", ""-"""	15489	protein-coding gene	gene with protein product	"""rearranged in thyroid adenomas"""	606043					Standard	NM_001079906		Approved	RITA, ZNF463, ZNF361	uc021uzh.1	Q9NQX6		ENST00000253144.9:c.578G>A	19.37:g.54080392G>A	ENSP00000253144:p.Gly193Glu		58772204	Q96GJ4	Missense_Mutation	SNP	ENST00000253144.9	37	CCDS33102.1	.	.	.	.	.	.	.	.	.	.	G	17.14	3.312750	0.60414	.	.	ENSG00000130844	ENST00000253144;ENST00000511593;ENST00000449416;ENST00000411977;ENST00000511154;ENST00000513999;ENST00000512387	T;T;T;T;T;T;T	0.58210	0.35;0.35;0.35;0.35;0.35;0.35;0.35	3.35	3.35	0.38373	Zinc finger, C2H2-like (1);Zinc finger, C2H2 (3);Zinc finger, C2H2-type/integrase, DNA-binding (1);	.	.	.	.	T	0.59569	0.2203	L	0.61218	1.895	0.27610	N	0.948695	D	0.65815	0.995	P	0.51297	0.665	T	0.55661	-0.8106	9	0.66056	D	0.02	.	12.5614	0.56283	0.0:0.0:1.0:0.0	.	193	Q9NQX6	ZN331_HUMAN	E	193	ENSP00000253144:G193E;ENSP00000427439:G193E;ENSP00000393817:G193E;ENSP00000393336:G193E;ENSP00000421014:G193E;ENSP00000423156:G193E;ENSP00000421728:G193E	ENSP00000253144:G193E	G	+	2	0	ZNF331	58772204	1.000000	0.71417	0.991000	0.47740	0.991000	0.79684	4.192000	0.58378	1.872000	0.54250	0.563000	0.77884	GGG		0.438	ZNF331-008	KNOWN	alternative_5_UTR|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000371366.1	NM_018555	
SLC4A5	57835	broad.mit.edu	37	2	74459626	74459626	+	Missense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr2:74459626G>A	ENST00000377634.4	-	24	3143	c.2744C>T	c.(2743-2745)cCt>cTt	p.P915L	SLC4A5_ENST00000483195.1_Intron|SLC4A5_ENST00000394019.2_Missense_Mutation_p.P915L|SLC4A5_ENST00000358683.4_Missense_Mutation_p.P813L|RP11-287D1.3_ENST00000451608.2_3'UTR|SLC4A5_ENST00000377632.1_Missense_Mutation_p.P915L|SLC4A5_ENST00000346834.4_Missense_Mutation_p.P915L|SLC4A5_ENST00000423644.1_Intron|SLC4A5_ENST00000357822.5_Missense_Mutation_p.P915L|SLC4A5_ENST00000359484.4_Missense_Mutation_p.P813L					solute carrier family 4 (sodium bicarbonate cotransporter), member 5									p.P915L(1)		breast(5)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(12)|lung(13)|ovary(5)|pancreas(2)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	48						CTGCTCCCCAGGGGCACTGGT	0.627																																																1	Substitution - Missense(1)	ovary(1)	2											70.0	77.0	75.0					2																	74459626		2203	4300	6503	74313134	SO:0001583	missense	57835			AF243499	CCDS1936.1, CCDS1937.1	2p13.1	2013-07-19	2013-07-19		ENSG00000188687	ENSG00000188687		"""Solute carriers"""	18168	protein-coding gene	gene with protein product		606757	"""solute carrier family 4, sodium bicarbonate cotransporter, member 5"""			10978526, 11087115	Standard	NM_133478		Approved	NBC4	uc002sko.1	Q9BY07	OTTHUMG00000090263	ENST00000377634.4:c.2744C>T	2.37:g.74459626G>A	ENSP00000366861:p.Pro915Leu		74313134		Missense_Mutation	SNP	ENST00000377634.4	37	CCDS1936.1	.	.	.	.	.	.	.	.	.	.	G	28.4	4.912805	0.92178	.	.	ENSG00000188687	ENST00000394019;ENST00000451608;ENST00000346834;ENST00000359484;ENST00000358683;ENST00000357822;ENST00000377632;ENST00000377634	D;D;T;T;D;D;D	0.88431	-2.38;-2.38;-1.29;-1.29;-2.38;-2.38;-2.38	5.12	5.12	0.69794	Bicarbonate transporter, C-terminal (1);	0.107097	0.64402	D	0.000004	D	0.95802	0.8634	M	0.93638	3.44	0.80722	D	1	D;D;P;D	0.89917	0.996;0.979;0.88;1.0	D;P;P;D	0.80764	0.937;0.897;0.752;0.994	D	0.96522	0.9386	10	0.72032	D	0.01	.	16.111	0.81263	0.0:0.0:1.0:0.0	.	915;813;915;915	Q9BY07-4;Q9BY07-7;Q9BY07;Q9BY07-3	.;.;S4A5_HUMAN;.	L	915;915;915;813;813;915;915;915	ENSP00000377587:P915L;ENSP00000251768:P915L;ENSP00000352461:P813L;ENSP00000351513:P813L;ENSP00000350475:P915L;ENSP00000366859:P915L;ENSP00000366861:P915L	ENSP00000251768:P915L	P	-	2	0	SLC4A5	74313134	1.000000	0.71417	0.991000	0.47740	0.983000	0.72400	9.544000	0.98092	2.681000	0.91329	0.563000	0.77884	CCT		0.627	SLC4A5-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000206583.3		
SCN2A	6326	broad.mit.edu	37	2	166198844	166198844	+	Missense_Mutation	SNP	G	G	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr2:166198844G>T	ENST00000375437.2	+	15	2717	c.2427G>T	c.(2425-2427)aaG>aaT	p.K809N	SCN2A_ENST00000375427.2_Missense_Mutation_p.K809N|SCN2A_ENST00000283256.6_Missense_Mutation_p.K809N|SCN2A_ENST00000357398.3_Missense_Mutation_p.K809N	NM_001040142.1	NP_001035232.1	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha subunit	809					intrinsic apoptotic signaling pathway in response to osmotic stress (GO:0008627)|membrane depolarization during action potential (GO:0086010)|myelination (GO:0042552)|neuron apoptotic process (GO:0051402)|neuronal action potential (GO:0019228)|sodium ion transmembrane transport (GO:0035725)|sodium ion transport (GO:0006814)	axon (GO:0030424)|integral component of plasma membrane (GO:0005887)|intercalated disc (GO:0014704)|intrinsic component of plasma membrane (GO:0031226)|node of Ranvier (GO:0033268)|paranode region of axon (GO:0033270)|plasma membrane (GO:0005886)|sodium channel complex (GO:0034706)|T-tubule (GO:0030315)|voltage-gated sodium channel complex (GO:0001518)	voltage-gated sodium channel activity (GO:0005248)	p.K809N(1)		NS(1)|breast(7)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(27)|liver(2)|lung(49)|ovary(6)|pancreas(1)|prostate(2)|skin(8)|upper_aerodigestive_tract(1)|urinary_tract(2)	118					Lamotrigine(DB00555)|Propofol(DB00818)|Valproic Acid(DB00313)|Zonisamide(DB00909)	TGTTTCTCAAGATAATTGCCA	0.338																																																1	Substitution - Missense(1)	ovary(1)	2											133.0	136.0	135.0					2																	166198844		2203	4300	6503	165907090	SO:0001583	missense	6326			AB208888	CCDS33313.1, CCDS33314.1	2q24.3	2012-02-26	2007-01-23	2007-01-23	ENSG00000136531	ENSG00000136531		"""Sodium channels"", ""Voltage-gated ion channels / Sodium channels"""	10588	protein-coding gene	gene with protein product		182390	"""sodium channel, voltage-gated, type II, alpha 2 polypeptide"", ""sodium channel, voltage-gated, type II, alpha 1 polypeptide"""	SCN2A1, SCN2A2		1317301, 16382098	Standard	XM_005246753		Approved	Nav1.2, HBSCII, HBSCI	uc002ude.3	Q99250	OTTHUMG00000044172	ENST00000375437.2:c.2427G>T	2.37:g.166198844G>T	ENSP00000364586:p.Lys809Asn		165907090	A6NC14|A6NIQ5|Q14472|Q53T77|Q9BZC9|Q9BZD0	Missense_Mutation	SNP	ENST00000375437.2	37	CCDS33314.1	.	.	.	.	.	.	.	.	.	.	G	22.4	4.288666	0.80914	.	.	ENSG00000136531	ENST00000375437;ENST00000357398;ENST00000283256;ENST00000375427	D;D;D;D	0.99129	-5.46;-5.46;-5.46;-5.46	5.59	3.8	0.43715	Ion transport (1);	0.000000	0.64402	D	0.000002	D	0.99521	0.9829	H	0.97896	4.1	0.54753	D	0.999989	D;D	0.89917	1.0;1.0	D;D	0.91635	0.999;0.999	D	0.98321	1.0528	10	0.87932	D	0	.	11.4895	0.50373	0.1437:0.0:0.8563:0.0	.	809;809	Q99250-2;Q99250	.;SCN2A_HUMAN	N	809	ENSP00000364586:K809N;ENSP00000349973:K809N;ENSP00000283256:K809N;ENSP00000364576:K809N	ENSP00000283256:K809N	K	+	3	2	SCN2A	165907090	1.000000	0.71417	1.000000	0.80357	0.995000	0.86356	3.533000	0.53561	0.729000	0.32403	0.643000	0.83706	AAG		0.338	SCN2A-202	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000102659.2	NM_021007	
FAM171B	165215	broad.mit.edu	37	2	187615987	187615987	+	Missense_Mutation	SNP	G	G	C			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr2:187615987G>C	ENST00000304698.5	+	5	1054	c.851G>C	c.(850-852)aGt>aCt	p.S284T		NM_177454.3	NP_803237.3	Q6P995	F171B_HUMAN	family with sequence similarity 171, member B	284						integral component of membrane (GO:0016021)	DNA binding (GO:0003677)	p.S284T(1)		NS(1)|breast(6)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(10)|lung(22)|ovary(6)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	54						AATGATATAAGTGCAGGGGAT	0.363																																																1	Substitution - Missense(1)	ovary(1)	2											87.0	91.0	89.0					2																	187615987		2203	4300	6503	187324232	SO:0001583	missense	165215			AF361495	CCDS33347.1	2q32.2	2008-06-16	2008-06-16	2008-06-16	ENSG00000144369	ENSG00000144369			29412	protein-coding gene	gene with protein product			"""KIAA1946"""	KIAA1946		11853319	Standard	NM_177454		Approved	FLJ34104	uc002ups.3	Q6P995	OTTHUMG00000154278	ENST00000304698.5:c.851G>C	2.37:g.187615987G>C	ENSP00000304108:p.Ser284Thr		187324232	Q53SK3|Q8N1Y4|Q8N3K1|Q8N970|Q8NB81|Q8TF55|Q8WYR8	Missense_Mutation	SNP	ENST00000304698.5	37	CCDS33347.1	.	.	.	.	.	.	.	.	.	.	G	2.679	-0.275873	0.05679	.	.	ENSG00000144369	ENST00000304698;ENST00000272804	T	0.29917	1.55	5.49	0.836	0.18891	.	0.422543	0.29053	N	0.013297	T	0.12263	0.0298	N	0.04508	-0.205	0.09310	N	1	B;B	0.14805	0.011;0.011	B;B	0.15870	0.014;0.014	T	0.25882	-1.0119	10	0.25751	T	0.34	-2.1067	8.3902	0.32524	0.7768:0.0:0.2232:0.0	.	284;285	Q6P995;A8K122	F171B_HUMAN;.	T	284	ENSP00000304108:S284T	ENSP00000272804:S284T	S	+	2	0	FAM171B	187324232	0.636000	0.27207	0.018000	0.16275	0.232000	0.25224	1.263000	0.33004	-0.006000	0.14370	0.609000	0.83330	AGT		0.363	FAM171B-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000334679.1	NM_177454	
PLTP	5360	broad.mit.edu	37	20	44538259	44538259	+	Silent	SNP	A	A	C			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr20:44538259A>C	ENST00000477313.1	-	4	975	c.381T>G	c.(379-381)acT>acG	p.T127T	PLTP_ENST00000542937.1_Silent_p.T147T|PLTP_ENST00000372431.3_Silent_p.T127T|PLTP_ENST00000354050.4_Intron|PLTP_ENST00000420868.2_Intron|PLTP_ENST00000372420.1_Silent_p.T39T			P55058	PLTP_HUMAN	phospholipid transfer protein	127					lipid metabolic process (GO:0006629)|lipid transport (GO:0006869)|sperm motility (GO:0030317)|vitamin E biosynthetic process (GO:0010189)	extracellular region (GO:0005576)|extracellular space (GO:0005615)	lipid binding (GO:0008289)	p.T127T(1)		endometrium(2)|kidney(2)|large_intestine(8)|lung(8)|ovary(1)	21		Myeloproliferative disorder(115;0.0122)				GCTCCAGACCAGTGCGGATGG	0.582																																																1	Substitution - coding silent(1)	ovary(1)	20											85.0	86.0	85.0					20																	44538259		2203	4300	6503	43971666	SO:0001819	synonymous_variant	5360			L26232	CCDS13386.1, CCDS13387.1, CCDS56196.1, CCDS56197.1	20q13.12	2011-08-16			ENSG00000100979	ENSG00000100979		"""BPI fold containing"""	9093	protein-coding gene	gene with protein product	"""BPI fold containing family E"""	172425					Standard	NM_006227		Approved	BPIFE	uc002xqn.2	P55058	OTTHUMG00000033047	ENST00000477313.1:c.381T>G	20.37:g.44538259A>C			43971666	A8K006|B4DDD5|B4DRB4|E1P5N8|E7EV16|Q8WTT1|Q9BR07|Q9BSH8	Silent	SNP	ENST00000477313.1	37	CCDS13386.1																																																																																				0.582	PLTP-005	KNOWN	alternative_5_UTR|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000354633.1	NM_006227	
SON	6651	broad.mit.edu	37	21	34925258	34925258	+	Missense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr21:34925258G>A	ENST00000356577.4	+	3	4196	c.3721G>A	c.(3721-3723)Gta>Ata	p.V1241I	SON_ENST00000290239.6_Missense_Mutation_p.V1241I|SON_ENST00000381679.4_Missense_Mutation_p.V1241I|SON_ENST00000300278.4_Missense_Mutation_p.V1241I|SON_ENST00000381692.2_Intron	NM_138927.1	NP_620305	P18583	SON_HUMAN	SON DNA binding protein	1241					cytokinesis (GO:0000910)|microtubule cytoskeleton organization (GO:0000226)|mRNA processing (GO:0006397)|negative regulation of apoptotic process (GO:0043066)|regulation of cell cycle (GO:0051726)|regulation of RNA splicing (GO:0043484)|RNA splicing (GO:0008380)	nuclear speck (GO:0016607)|nucleus (GO:0005634)	DNA binding (GO:0003677)|nucleic acid binding (GO:0003676)|poly(A) RNA binding (GO:0044822)|RNA binding (GO:0003723)	p.V1241I(1)		breast(3)|central_nervous_system(2)|cervix(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(13)|lung(25)|ovary(4)|prostate(2)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	72						CTCAGTTTTAGTATCAGAGGC	0.473																																																1	Substitution - Missense(1)	ovary(1)	21											141.0	148.0	145.0					21																	34925258		2203	4300	6503	33847128	SO:0001583	missense	6651			AF380181	CCDS13629.1, CCDS13631.1, CCDS74784.1	21q22.1-q22.2	2013-01-28			ENSG00000159140	ENSG00000159140		"""G patch domain containing"""	11183	protein-coding gene	gene with protein product	"""NRE-binding protein"", ""negative regulatory element-binding protein"", ""Bax antagonist selected in Saccharomyces 1"""	182465		C21orf50		8318737, 21551269	Standard	NM_032195		Approved	DBP-5, NREBP, KIAA1019, BASS1, FLJ21099, FLJ33914	uc002yse.1	P18583	OTTHUMG00000065806	ENST00000356577.4:c.3721G>A	21.37:g.34925258G>A	ENSP00000348984:p.Val1241Ile		33847128	D3DSF5|D3DSF6|E7ETE8|E7EU67|E7EVW3|E9PFQ2|O14487|O95981|Q14120|Q6PKE0|Q9H7B1|Q9P070|Q9P072|Q9UKP9|Q9UPY0	Missense_Mutation	SNP	ENST00000356577.4	37	CCDS13629.1	.	.	.	.	.	.	.	.	.	.	G	13.07	2.126297	0.37533	.	.	ENSG00000159140	ENST00000356577;ENST00000290239;ENST00000300278;ENST00000381679	T;T;T;T	0.12569	2.86;2.86;2.85;2.67	5.54	2.26	0.28386	.	0.729009	0.12327	N	0.478733	T	0.11665	0.0284	L	0.39898	1.24	0.09310	N	0.999999	B;P;B;B;B	0.36483	0.43;0.555;0.034;0.43;0.43	B;B;B;B;B	0.32211	0.142;0.062;0.036;0.142;0.108	T	0.13872	-1.0493	10	0.52906	T	0.07	.	11.2875	0.49230	0.2433:0.0:0.7567:0.0	.	1241;1241;922;1241;1241	P18583-10;P18583;P18583-2;P18583-3;P18583-6	.;SON_HUMAN;.;.;.	I	1241	ENSP00000348984:V1241I;ENSP00000290239:V1241I;ENSP00000300278:V1241I;ENSP00000371095:V1241I	ENSP00000290239:V1241I	V	+	1	0	SON	33847128	0.542000	0.26426	0.820000	0.32676	0.768000	0.43524	1.237000	0.32695	0.692000	0.31613	0.563000	0.77884	GTA		0.473	SON-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000140978.2	NM_138927	
THAP9	79725	broad.mit.edu	37	4	83838349	83838349	+	Silent	SNP	T	T	C			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr4:83838349T>C	ENST00000302236.5	+	5	1035	c.984T>C	c.(982-984)ggT>ggC	p.G328G	LIN54_ENST00000505905.1_Intron	NM_024672.4	NP_078948.3	Q9H5L6	THAP9_HUMAN	THAP domain containing 9	328					DNA integration (GO:0015074)|DNA recombination (GO:0006310)|transposition, DNA-mediated (GO:0006313)		metal ion binding (GO:0046872)|sequence-specific DNA binding (GO:0043565)|transferase activity (GO:0016740)|transposase activity (GO:0004803)	p.G328G(1)		breast(1)|central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(13)|lung(5)|ovary(2)|pancreas(2)|prostate(1)|upper_aerodigestive_tract(3)	33		Hepatocellular(203;0.114)				TGGCAGTGGGTATTTTTGGCC	0.423																																																1	Substitution - coding silent(1)	ovary(1)	4											124.0	120.0	121.0					4																	83838349		2203	4300	6503	84057373	SO:0001819	synonymous_variant	79725			AK091412	CCDS3598.1	4q21.3	2013-01-25			ENSG00000168152	ENSG00000168152		"""THAP (C2CH-type zinc finger) domain containing"""	23192	protein-coding gene	gene with protein product		612537				12575992	Standard	NM_024672		Approved	FLJ34093	uc003hnt.2	Q9H5L6	OTTHUMG00000130291	ENST00000302236.5:c.984T>C	4.37:g.83838349T>C			84057373	B3KRE2|Q59AC9	Silent	SNP	ENST00000302236.5	37	CCDS3598.1																																																																																				0.423	THAP9-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000252633.1	NM_024672	
MAB21L2	10586	broad.mit.edu	37	4	151504974	151504974	+	Missense_Mutation	SNP	C	C	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr4:151504974C>A	ENST00000317605.4	+	1	1898	c.793C>A	c.(793-795)Ccc>Acc	p.P265T	LRBA_ENST00000535741.1_Intron|RP11-1336O20.2_ENST00000507934.1_RNA|LRBA_ENST00000357115.3_Intron|LRBA_ENST00000510413.1_Intron|LRBA_ENST00000503716.1_5'Flank|LRBA_ENST00000507224.1_Intron	NM_006439.4	NP_006430.1	Q9Y586	MB212_HUMAN	mab-21-like 2 (C. elegans)	265					camera-type eye development (GO:0043010)|embryonic body morphogenesis (GO:0010172)|eye development (GO:0001654)|nervous system development (GO:0007399)|positive regulation of cell proliferation (GO:0008284)	nucleus (GO:0005634)		p.P265T(1)		breast(2)|endometrium(6)|kidney(1)|large_intestine(4)|lung(5)|ovary(1)|skin(2)	21	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		CCTGGAGCTACCCGGCCAGCC	0.627																																																1	Substitution - Missense(1)	ovary(1)	4											52.0	52.0	52.0					4																	151504974		2203	4300	6503	151724424	SO:0001583	missense	10586			AF155219	CCDS3774.1	4q31.3	2013-10-22	2001-11-28		ENSG00000181541	ENSG00000181541			6758	protein-coding gene	gene with protein product		604357	"""mab-21 (C. elegans)-like 2"""				Standard	NM_006439		Approved		uc003ilw.3	Q9Y586	OTTHUMG00000161442	ENST00000317605.4:c.793C>A	4.37:g.151504974C>A	ENSP00000324701:p.Pro265Thr		151724424	B3KP37|Q9HBA7	Missense_Mutation	SNP	ENST00000317605.4	37	CCDS3774.1	.	.	.	.	.	.	.	.	.	.	C	13.02	2.113648	0.37339	.	.	ENSG00000181541	ENST00000317605	T	0.07800	3.16	5.14	4.29	0.51040	Ricin B lectin (1);	0.000000	0.85682	D	0.000000	T	0.10637	0.0260	L	0.59436	1.845	0.80722	D	1	B	0.23990	0.095	B	0.25987	0.065	T	0.06481	-1.0824	10	0.09590	T	0.72	-18.0284	16.0884	0.81073	0.0:0.8659:0.1341:0.0	.	265	Q9Y586	MB212_HUMAN	T	265	ENSP00000324701:P265T	ENSP00000324701:P265T	P	+	1	0	MAB21L2	151724424	1.000000	0.71417	0.992000	0.48379	0.976000	0.68499	6.022000	0.70839	1.263000	0.44181	0.462000	0.41574	CCC		0.627	MAB21L2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000364937.1	NM_006439	
KIF2A	3796	broad.mit.edu	37	5	61668334	61668334	+	Intron	SNP	C	C	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr5:61668334C>T	ENST00000401507.3	+	17	1957				KIF2A_ENST00000407818.3_Silent_p.L572L|KIF2A_ENST00000509663.2_Intron|KIF2A_ENST00000506857.1_Intron|KIF2A_ENST00000381103.2_Intron	NM_001243953.1|NM_004520.4	NP_001230882.1|NP_004511.2	O00139	KIF2A_HUMAN	kinesin heavy chain member 2A						antigen processing and presentation of exogenous peptide antigen via MHC class II (GO:0019886)|ATP catabolic process (GO:0006200)|blood coagulation (GO:0007596)|cell differentiation (GO:0030154)|metabolic process (GO:0008152)|microtubule depolymerization (GO:0007019)|microtubule-based movement (GO:0007018)|mitotic cell cycle (GO:0000278)|mitotic nuclear division (GO:0007067)|mitotic spindle organization (GO:0007052)|nervous system development (GO:0007399)	centrosome (GO:0005813)|cytosol (GO:0005829)|kinesin complex (GO:0005871)|membrane (GO:0016020)|microtubule (GO:0005874)	ATP binding (GO:0005524)|ATPase activity (GO:0016887)|microtubule motor activity (GO:0003777)|motor activity (GO:0003774)			NS(1)|endometrium(3)|kidney(3)|large_intestine(3)|lung(3)|ovary(1)|skin(1)	15		Lung NSC(810;8.94e-06)|Prostate(74;0.0132)|Ovarian(174;0.051)|Breast(144;0.077)		Lung(70;0.14)		GCCCTGATCTCTCTCCTTCTT	0.388																																																0			5											92.0	88.0	89.0					5																	61668334		1861	4105	5966	61704091	SO:0001627	intron_variant	3796			BC031828	CCDS3980.2, CCDS47216.1, CCDS58949.1	5q12-q13	2008-02-05	2006-09-26	2006-09-26	ENSG00000068796	ENSG00000068796		"""Kinesins"""	6318	protein-coding gene	gene with protein product		602591	"""kinesin heavy chain member 2"""	KIF2		9177777	Standard	NM_001098511		Approved	HK2	uc003jsz.4	O00139	OTTHUMG00000097755	ENST00000401507.3:c.1647-1180C>T	5.37:g.61668334C>T			61704091	A5YM42|A5YM54|B4DY54|D3DW97|E9PB70|Q7Z5I3|Q8N5Q7	Silent	SNP	ENST00000401507.3	37	CCDS3980.2																																																																																				0.388	KIF2A-003	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000317989.1	NM_004520	
PCDHA13	56136	broad.mit.edu	37	5	140262567	140262567	+	Silent	SNP	C	C	T	rs139888237	byFrequency	TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr5:140262567C>T	ENST00000289272.2	+	1	714	c.714C>T	c.(712-714)aaC>aaT	p.N238N	PCDHA5_ENST00000529619.1_Intron|PCDHA10_ENST00000307360.5_Intron|PCDHA1_ENST00000504120.2_Intron|PCDHA1_ENST00000394633.3_Intron|PCDHA4_ENST00000530339.1_Intron|PCDHA7_ENST00000525929.1_Intron|PCDHA4_ENST00000512229.2_Intron|PCDHA13_ENST00000409494.1_Silent_p.N238N|PCDHA3_ENST00000522353.2_Intron|PCDHA11_ENST00000398640.2_Intron|PCDHA12_ENST00000398631.2_Intron|PCDHA10_ENST00000506939.2_Intron|PCDHA8_ENST00000531613.1_Intron|PCDHA2_ENST00000526136.1_Intron|PCDHA6_ENST00000527624.1_Intron|PCDHA5_ENST00000529859.1_Intron|PCDHA6_ENST00000529310.1_Intron|PCDHA9_ENST00000532602.1_Intron	NM_018904.2|NM_031865.1	NP_061727.1|NP_114071.1	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13	238	Cadherin 2. {ECO:0000255|PROSITE- ProRule:PRU00043}.				homophilic cell adhesion (GO:0007156)	integral component of membrane (GO:0016021)|plasma membrane (GO:0005886)	calcium ion binding (GO:0005509)	p.N238N(1)		NS(1)|biliary_tract(2)|breast(3)|central_nervous_system(2)|cervix(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(7)|kidney(2)|large_intestine(18)|liver(3)|lung(23)|ovary(4)|prostate(6)|skin(7)|upper_aerodigestive_tract(2)|urinary_tract(2)	95			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAATGACAACGCCCCGGAAT	0.453													.|||	2	0.000399361	0.0	0.0	5008	,	,		19765	0.002		0.0	False		,,,				2504	0.0				Melanoma(147;1739 1852 5500 27947 37288)											1	Substitution - coding silent(1)	ovary(1)	5											67.0	65.0	66.0					5																	140262567		2203	4300	6503	140242751	SO:0001819	synonymous_variant	56136			AF152478	CCDS4240.1	5q31	2010-11-26			ENSG00000239389	ENSG00000239389		"""Cadherins / Protocadherins : Clustered"""	8667	other	complex locus constituent	"""KIAA0345-like 1"", ""ortholog of mouse CNR5"""	606319		CNRS5		10380929, 10662547	Standard	NM_018904		Approved	CNR5, CRNR5, CNRN5, PCDH-ALPHA13		Q9Y5I0	OTTHUMG00000129614	ENST00000289272.2:c.714C>T	5.37:g.140262567C>T			140242751	O75277	Silent	SNP	ENST00000289272.2	37	CCDS4240.1																																																																																				0.453	PCDHA13-003	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000335000.1	NM_018904	
MOG	4340	broad.mit.edu	37	6	29641002	29641002	+	IGR	SNP	T	T	G			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr6:29641002T>G	ENST00000376917.3	+	0	2160				ZFP57_ENST00000488757.1_Silent_p.R296R|ZFP57_ENST00000376881.3_Silent_p.R276R|ZFP57_ENST00000376883.1_Silent_p.R276R	NM_002433.4|NM_206809.3	NP_002424.3|NP_996532.2	Q16653	MOG_HUMAN	myelin oligodendrocyte glycoprotein						cell adhesion (GO:0007155)|central nervous system development (GO:0007417)|positive regulation of MyD88-dependent toll-like receptor signaling pathway (GO:0034126)	integral component of membrane (GO:0016021)|plasma membrane (GO:0005886)		p.R276R(1)		endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(6)|lung(8)|ovary(1)|skin(2)	19						CCTGGAATCCTCAAAGTACAC	0.557																																																1	Substitution - coding silent(1)	ovary(1)	6											153.0	160.0	158.0					6																	29641002		1240	2546	3786	29748981	SO:0001628	intergenic_variant	346171				CCDS4667.1, CCDS34366.1, CCDS34367.1, CCDS34368.1, CCDS34369.1, CCDS34370.1, CCDS47394.1, CCDS47395.1, CCDS47395.2, CCDS54977.1	6p22.1	2014-01-16			ENSG00000204655	ENSG00000204655		"""Immunoglobulin superfamily / V-set domain containing"", ""Butyrophilins"""	7197	protein-coding gene	gene with protein product		159465					Standard	NM_002433		Approved	BTN6, BTNL11	uc003nne.3	Q16653	OTTHUMG00000031099		6.37:g.29641002T>G			29748981	A6NDR4|A6NNJ9|A8MY31|B0UZR9|E9PGF0|F8W9D5|O00713|O00714|O00715|Q13054|Q13055|Q14855|Q29ZN8|Q56UY0|Q5JNX7|Q5JNY1|Q5JNY2|Q5JNY4|Q5SSB5|Q5SSB6|Q5STL9|Q5STM0|Q5STM1|Q5STM2|Q5STM5|Q5SUK5|Q5SUK7|Q5SUK8|Q5SUK9|Q5SUL0|Q5SUL1|Q8IYG5|Q92891|Q92892|Q92893|Q92894|Q92895|Q93053|Q96KU9|Q96KV0|Q96KV1|Q99605	Silent	SNP	ENST00000376917.3	37	CCDS34370.1																																																																																				0.557	MOG-001	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000076160.3	NM_002433	
MAPK14	1432	broad.mit.edu	37	6	35995964	35995964	+	Silent	SNP	G	G	C			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr6:35995964G>C	ENST00000229794.4	+	1	418	c.30G>C	c.(28-30)cgG>cgC	p.R10R	MAPK14_ENST00000229795.3_Silent_p.R10R|MAPK14_ENST00000468133.1_Intron|MAPK14_ENST00000310795.4_Silent_p.R10R	NM_139012.2|NM_139014.2	NP_620581.1|NP_620583.1	Q16539	MK14_HUMAN	mitogen-activated protein kinase 14	10					3'-UTR-mediated mRNA stabilization (GO:0070935)|activation of MAPK activity (GO:0000187)|angiogenesis (GO:0001525)|apoptotic process (GO:0006915)|blood coagulation (GO:0007596)|cartilage condensation (GO:0001502)|cell morphogenesis (GO:0000902)|cell surface receptor signaling pathway (GO:0007166)|cellular component movement (GO:0006928)|cellular response to ionizing radiation (GO:0071479)|cellular response to lipopolysaccharide (GO:0071222)|cellular response to vascular endothelial growth factor stimulus (GO:0035924)|chemotaxis (GO:0006935)|chondrocyte differentiation (GO:0002062)|DNA damage checkpoint (GO:0000077)|fatty acid oxidation (GO:0019395)|gene expression (GO:0010467)|glucose metabolic process (GO:0006006)|innate immune response (GO:0045087)|intracellular signal transduction (GO:0035556)|lipopolysaccharide-mediated signaling pathway (GO:0031663)|mRNA metabolic process (GO:0016071)|muscle cell differentiation (GO:0042692)|MyD88-dependent toll-like receptor signaling pathway (GO:0002755)|MyD88-independent toll-like receptor signaling pathway (GO:0002756)|myoblast differentiation involved in skeletal muscle regeneration (GO:0014835)|negative regulation of canonical Wnt signaling pathway (GO:0090090)|neurotrophin TRK receptor signaling pathway (GO:0048011)|osteoclast differentiation (GO:0030316)|p38MAPK cascade (GO:0038066)|peptidyl-serine phosphorylation (GO:0018105)|platelet activation (GO:0030168)|positive regulation of erythrocyte differentiation (GO:0045648)|positive regulation of muscle cell differentiation (GO:0051149)|positive regulation of myoblast differentiation (GO:0045663)|positive regulation of myoblast fusion (GO:1901741)|positive regulation of myotube differentiation (GO:0010831)|positive regulation of protein import into nucleus (GO:0042307)|positive regulation of reactive oxygen species metabolic process (GO:2000379)|positive regulation of transcription from RNA polymerase II promoter (GO:0045944)|Ras protein signal transduction (GO:0007265)|regulation of sequence-specific DNA binding transcription factor activity (GO:0051090)|regulation of transcription from RNA polymerase II promoter (GO:0006357)|response to muramyl dipeptide (GO:0032495)|RNA metabolic process (GO:0016070)|signal transduction (GO:0007165)|signal transduction in response to DNA damage (GO:0042770)|skeletal muscle tissue development (GO:0007519)|stress-activated MAPK cascade (GO:0051403)|stress-induced premature senescence (GO:0090400)|striated muscle cell differentiation (GO:0051146)|toll-like receptor 10 signaling pathway (GO:0034166)|toll-like receptor 2 signaling pathway (GO:0034134)|toll-like receptor 3 signaling pathway (GO:0034138)|toll-like receptor 4 signaling pathway (GO:0034142)|toll-like receptor 5 signaling pathway (GO:0034146)|toll-like receptor 9 signaling pathway (GO:0034162)|toll-like receptor signaling pathway (GO:0002224)|toll-like receptor TLR1:TLR2 signaling pathway (GO:0038123)|toll-like receptor TLR6:TLR2 signaling pathway (GO:0038124)|transcription, DNA-templated (GO:0006351)|transmembrane receptor protein serine/threonine kinase signaling pathway (GO:0007178)|TRIF-dependent toll-like receptor signaling pathway (GO:0035666)|vascular endothelial growth factor receptor signaling pathway (GO:0048010)	cytoplasm (GO:0005737)|cytosol (GO:0005829)|extracellular vesicular exosome (GO:0070062)|mitochondrion (GO:0005739)|nucleoplasm (GO:0005654)|nucleus (GO:0005634)|spindle pole (GO:0000922)	ATP binding (GO:0005524)|MAP kinase activity (GO:0004707)|MAP kinase kinase activity (GO:0004708)|NFAT protein binding (GO:0051525)|protein serine/threonine kinase activity (GO:0004674)	p.R10R(1)		central_nervous_system(1)|kidney(1)|large_intestine(4)|lung(5)|ovary(2)|prostate(1)|skin(1)|stomach(1)	16						CGTTCTACCGGCAGGAGCTGA	0.657																																					Pancreas(20;8 363 26997 32430 36377 43317 49243 50560 51947)|Colon(176;951 1093 20177 30266 32328 34418 35271 44052 51610)											1	Substitution - coding silent(1)	ovary(1)	6											58.0	60.0	59.0					6																	35995964		2203	4300	6503	36103942	SO:0001819	synonymous_variant	1432			L35263	CCDS4815.1, CCDS4816.1, CCDS4817.1	6p21.3-p21.2	2011-06-09			ENSG00000112062	ENSG00000112062		"""Mitogen-activated protein kinase cascade / Kinases"""	6876	protein-coding gene	gene with protein product	"""p38 MAP kinase"""	600289		CSPB1, CSBP1, CSBP2		7997261	Standard	NM_139012		Approved	PRKM14, p38, Mxi2, PRKM15	uc003olq.3	Q16539	OTTHUMG00000159806	ENST00000229794.4:c.30G>C	6.37:g.35995964G>C			36103942	A6ZJ92|A8K6P4|B0LPH0|B5TY32|O60776|Q13083|Q14084|Q8TDX0	Silent	SNP	ENST00000229794.4	37	CCDS4816.1																																																																																				0.657	MAPK14-002	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000357450.1	NM_001315	
OPRM1	4988	broad.mit.edu	37	6	154411138	154411138	+	Silent	SNP	C	C	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr6:154411138C>T	ENST00000330432.7	+	2	705	c.468C>T	c.(466-468)agC>agT	p.S156S	OPRM1_ENST00000434900.2_Silent_p.S249S|OPRM1_ENST00000520708.1_Silent_p.S56S|OPRM1_ENST00000414028.2_Silent_p.S156S|OPRM1_ENST00000428397.2_Silent_p.S156S|OPRM1_ENST00000337049.4_Silent_p.S156S|OPRM1_ENST00000229768.5_Silent_p.S156S|OPRM1_ENST00000452687.2_Silent_p.S156S|OPRM1_ENST00000518759.1_Silent_p.S75S|OPRM1_ENST00000419506.2_Silent_p.S156S|OPRM1_ENST00000524163.1_Silent_p.S156S|OPRM1_ENST00000522236.1_Silent_p.S56S|OPRM1_ENST00000360422.4_Silent_p.S156S|OPRM1_ENST00000522555.1_Silent_p.S56S|OPRM1_ENST00000435918.2_Silent_p.S156S	NM_000914.3	NP_000905.3	P35372	OPRM_HUMAN	opioid receptor, mu 1	156					adenylate cyclase-activating dopamine receptor signaling pathway (GO:0007191)|adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway (GO:0007193)|behavioral response to ethanol (GO:0048149)|calcium ion transmembrane transport (GO:0070588)|cellular response to stress (GO:0033554)|G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger (GO:0007187)|locomotory behavior (GO:0007626)|negative regulation of adenylate cyclase activity (GO:0007194)|negative regulation of cAMP-mediated signaling (GO:0043951)|negative regulation of cell proliferation (GO:0008285)|negative regulation of cytosolic calcium ion concentration (GO:0051481)|negative regulation of nitric oxide biosynthetic process (GO:0045019)|negative regulation of Wnt protein secretion (GO:0061358)|neuropeptide signaling pathway (GO:0007218)|opioid receptor signaling pathway (GO:0038003)|phospholipase C-activating G-protein coupled receptor signaling pathway (GO:0007200)|positive regulation of cAMP-mediated signaling (GO:0043950)|positive regulation of cytosolic calcium ion concentration (GO:0007204)|positive regulation of ERK1 and ERK2 cascade (GO:0070374)|positive regulation of neurogenesis (GO:0050769)|positive regulation of nitric oxide biosynthetic process (GO:0045429)|regulation of N-methyl-D-aspartate selective glutamate receptor activity (GO:2000310)|sensory perception (GO:0007600)|sensory perception of pain (GO:0019233)	endoplasmic reticulum (GO:0005783)|Golgi apparatus (GO:0005794)|integral component of plasma membrane (GO:0005887)|plasma membrane (GO:0005886)	beta-endorphin receptor activity (GO:0004979)|G-protein alpha-subunit binding (GO:0001965)|G-protein coupled receptor activity (GO:0004930)|morphine receptor activity (GO:0038047)|voltage-gated calcium channel activity (GO:0005245)	p.S156S(1)		breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(5)|lung(15)|ovary(1)|skin(3)|upper_aerodigestive_tract(1)	33		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Alvimopan(DB06274)|Amitriptyline(DB00321)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dextromethorphan(DB00514)|Dextropropoxyphene(DB00647)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Ethylmorphine(DB01466)|Fentanyl(DB00813)|Heroin(DB01452)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Ketamine(DB01221)|Ketobemidone(DB06738)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Methylnaltrexone(DB06800)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Ondansetron(DB00904)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Pethidine(DB00454)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tapentadol(DB06204)|Tramadol(DB00193)	TGTTCACCAGCATATTCACCC	0.443																																																1	Substitution - coding silent(1)	ovary(1)	6											254.0	246.0	249.0					6																	154411138		2145	4269	6414	154452831	SO:0001819	synonymous_variant	4988			L29301	CCDS43517.1, CCDS43518.1, CCDS47503.1, CCDS47504.1, CCDS47505.1, CCDS47506.1, CCDS47507.1, CCDS47508.1, CCDS55071.1, CCDS55068.1, CCDS55069.1, CCDS55070.1	6q24-q25	2012-08-08			ENSG00000112038	ENSG00000112038		"""GPCR / Class A : Opioid receptors"""	8156	protein-coding gene	gene with protein product		600018					Standard	NM_001145285		Approved	MOR1	uc003qpo.1	P35372	OTTHUMG00000015870	ENST00000330432.7:c.468C>T	6.37:g.154411138C>T			154452831	B0FXJ1|B2R9S7|B8Q1L7|B8Q1L8|B8Q1L9|E7EWZ3|G8XRH6|G8XRH8|Q12930|Q4VWM1|Q4VWM2|Q4VWM3|Q4VWM4|Q4VWM6|Q4VWX6|Q5TDA1|Q6UPP1|Q6UQ80|Q7Z2D8|Q86V80|Q8IWW3|Q8IWW4|Q9UCZ4|Q9UN57	Silent	SNP	ENST00000330432.7	37	CCDS55070.1																																																																																				0.443	OPRM1-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000042786.2	NM_000914	
TNS3	64759	broad.mit.edu	37	7	47451348	47451348	+	Nonsense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr7:47451348G>A	ENST00000398879.1	-	13	1066	c.700C>T	c.(700-702)Cag>Tag	p.Q234*	TNS3_ENST00000311160.9_Nonsense_Mutation_p.Q234*|TNS3_ENST00000355730.3_Nonsense_Mutation_p.Q234*|TNS3_ENST00000442536.2_Nonsense_Mutation_p.Q234*|TNS3_ENST00000458317.2_Nonsense_Mutation_p.Q234*			Q68CZ2	TENS3_HUMAN	tensin 3	234	C2 tensin-type. {ECO:0000255|PROSITE- ProRule:PRU00589}.				cell migration (GO:0016477)|lung alveolus development (GO:0048286)|positive regulation of cell proliferation (GO:0008284)	cytoplasm (GO:0005737)|focal adhesion (GO:0005925)		p.Q234*(1)		NS(1)|autonomic_ganglia(1)|breast(17)|endometrium(5)|kidney(4)|large_intestine(7)|liver(1)|lung(16)|ovary(4)|prostate(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	64						TTCAGAAGCTGGGCCGGCTCG	0.517																																																1	Substitution - Nonsense(1)	ovary(1)	7											57.0	65.0	62.0					7																	47451348		2054	4177	6231	47417873	SO:0001587	stop_gained	64759			AF378756	CCDS5506.2	7p12.3	2013-02-14	2005-05-13	2005-05-13	ENSG00000136205	ENSG00000136205		"""SH2 domain containing"""	21616	protein-coding gene	gene with protein product	"""tumor endothelial marker 6"""	606825	"""tensin-like SH2 domain-containing 1"""	TENS1		11559528	Standard	NM_022748		Approved	TEM6, H_NH0549I23.2, FLJ13732	uc003tnw.3	Q68CZ2	OTTHUMG00000074075	ENST00000398879.1:c.700C>T	7.37:g.47451348G>A	ENSP00000381854:p.Gln234*		47417873	B2RNV1|Q6IPQ2|Q8IZW7|Q8NAD0|Q96PE0|Q96S48	Nonsense_Mutation	SNP	ENST00000398879.1	37	CCDS5506.2	.	.	.	.	.	.	.	.	.	.	G	39	7.812107	0.98504	.	.	ENSG00000136205	ENST00000311160;ENST00000538633;ENST00000398879;ENST00000355730;ENST00000457718;ENST00000450444;ENST00000442536;ENST00000458317	.	.	.	5.17	5.17	0.71159	.	0.060006	0.64402	D	0.000002	.	.	.	.	.	.	0.80722	D	1	.	.	.	.	.	.	.	.	.	.	0.37606	T	0.19	-29.1564	14.219	0.65812	0.0:0.0:1.0:0.0	.	.	.	.	X	234;344;234;234;337;323;234;234	.	ENSP00000312143:Q234X	Q	-	1	0	TNS3	47417873	1.000000	0.71417	0.999000	0.59377	0.984000	0.73092	7.807000	0.86032	2.416000	0.81992	0.555000	0.69702	CAG		0.517	TNS3-202	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000157253.1	NM_022748	
AKAP9	10142	broad.mit.edu	37	7	91709382	91709382	+	Missense_Mutation	SNP	A	A	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr7:91709382A>T	ENST00000359028.2	+	32	8196	c.7971A>T	c.(7969-7971)gaA>gaT	p.E2657D	AKAP9_ENST00000356239.3_Missense_Mutation_p.E2645D|AKAP9_ENST00000358100.2_Missense_Mutation_p.E2657D			Q99996	AKAP9_HUMAN	A kinase (PRKA) anchor protein 9	2657	Glu-rich.				G2/M transition of mitotic cell cycle (GO:0000086)|mitotic cell cycle (GO:0000278)|Sertoli cell development (GO:0060009)|signal transduction (GO:0007165)|spermatogenesis (GO:0007283)|synaptic transmission (GO:0007268)|transport (GO:0006810)	centrosome (GO:0005813)|ciliary basal body (GO:0036064)|cytoskeleton (GO:0005856)|cytosol (GO:0005829)|Golgi apparatus (GO:0005794)|intracellular membrane-bounded organelle (GO:0043231)|pericentriolar material (GO:0000242)|voltage-gated potassium channel complex (GO:0008076)	ion channel binding (GO:0044325)|protein complex scaffold (GO:0032947)|receptor binding (GO:0005102)	p.E2645D(1)|p.E2657D(1)		NS(1)|autonomic_ganglia(2)|breast(14)|central_nervous_system(3)|cervix(1)|endometrium(13)|kidney(12)|large_intestine(35)|lung(49)|ovary(8)|prostate(6)|skin(8)|stomach(1)|urinary_tract(2)	155	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGCTGCTAGAACTACAGAAGC	0.323			T	BRAF	papillary thyroid																																		Dom	yes		7	7q21-q22	10142	A kinase (PRKA) anchor protein (yotiao) 9		E	2	Substitution - Missense(2)	ovary(2)	7											21.0	24.0	23.0					7																	91709382		2116	4254	6370	91547318	SO:0001583	missense	10142			AF091711	CCDS5622.1	7q21-q22	2014-09-17	2013-09-25		ENSG00000127914	ENSG00000127914		"""A-kinase anchor proteins"", ""Serine/threonine phosphatases / Protein phosphatase 1, regulatory subunits"""	379	protein-coding gene	gene with protein product	"""A-kinase anchoring protein 450"", ""AKAP9-BRAF fusion protein"", ""AKAP120-like protein"", ""centrosome- and golgi-localized protein kinase N-associated protein"", ""protein kinase A anchoring protein 9"", ""A-kinase anchor protein, 350kDa"", ""protein phosphatase 1, regulatory subunit 45"", ""yotiao"""	604001				9482789, 10390370, 24475373	Standard	NM_147185		Approved	KIAA0803, AKAP350, AKAP450, CG-NAP, YOTIAO, HYPERION, PRKA9, MU-RMS-40.16A, PPP1R45, LQT11	uc003ulg.3	Q99996	OTTHUMG00000131127	ENST00000359028.2:c.7971A>T	7.37:g.91709382A>T	ENSP00000351922:p.Glu2657Asp		91547318	A4D1F0|A4D1F2|A4D1F4|O14869|O43355|O94895|Q75N20|Q9UQH3|Q9UQQ4|Q9Y6B8|Q9Y6Y2	Missense_Mutation	SNP	ENST00000359028.2	37		.	.	.	.	.	.	.	.	.	.	A	11.89	1.775147	0.31411	.	.	ENSG00000127914	ENST00000356239;ENST00000359028;ENST00000358100;ENST00000413120;ENST00000394534	T;T;T;T	0.03920	3.84;3.84;3.83;3.76	4.69	-3.71	0.04424	.	0.405503	0.18120	N	0.151090	T	0.06872	0.0175	M	0.67953	2.075	0.23331	N	0.997895	P;P;P;P	0.46142	0.728;0.799;0.873;0.873	B;B;P;P	0.44811	0.366;0.272;0.461;0.461	T	0.13176	-1.0519	10	0.52906	T	0.07	.	8.8601	0.35251	0.4318:0.111:0.4572:0.0	.	2649;2657;2645;2637	Q99996-6;Q99996;Q99996-2;Q99996-3	.;AKAP9_HUMAN;.;.	D	2645;2657;2657;2649;491	ENSP00000348573:E2645D;ENSP00000351922:E2657D;ENSP00000350813:E2657D;ENSP00000378042:E491D	ENSP00000348573:E2645D	E	+	3	2	AKAP9	91547318	0.984000	0.35163	0.311000	0.25182	0.642000	0.38348	0.142000	0.16096	-0.268000	0.09312	0.482000	0.46254	GAA		0.323	AKAP9-202	KNOWN	basic	protein_coding	protein_coding		NM_005751	
ORAI2	80228	broad.mit.edu	37	7	102079522	102079522	+	Missense_Mutation	SNP	C	C	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr7:102079522C>T	ENST00000356387.2	+	3	354	c.119C>T	c.(118-120)tCt>tTt	p.S40F	ORAI2_ENST00000473939.1_Missense_Mutation_p.S40F|ORAI2_ENST00000403646.3_Missense_Mutation_p.S40F|ORAI2_ENST00000488996.1_Intron|ORAI2_ENST00000478730.2_Missense_Mutation_p.S40F	NM_001126340.1|NM_001271818.1|NM_001271819.1|NM_032831.3	NP_001119812.1|NP_001258747.1|NP_001258748.1|NP_116220.1	Q96SN7	ORAI2_HUMAN	ORAI calcium release-activated calcium modulator 2	40						growth cone (GO:0030426)|integral component of membrane (GO:0016021)		p.S40F(1)		autonomic_ganglia(1)|breast(1)|endometrium(3)|kidney(1)|lung(4)|ovary(1)|prostate(1)|skin(2)|urinary_tract(1)	15						CTGGTCACCTCTAACCACCAC	0.647																																																1	Substitution - Missense(1)	ovary(1)	7											90.0	76.0	81.0					7																	102079522		2203	4300	6503	101866527	SO:0001583	missense	80228			AF258552	CCDS5722.1	7q22.1	2007-08-14	2007-08-14	2007-08-14	ENSG00000160991	ENSG00000160991		"""ORAI calcium release-activated calcium modulators"""	21667	protein-coding gene	gene with protein product	"""CAP-binding protein complex interacting protein 2"""	610929	"""chromosome 7 open reading frame 19"", ""transmembrane protein 142B"""	C7orf19, TMEM142B		16582901	Standard	NM_001126340		Approved	CBCIP2, FLJ12474, FLJ14733, H_NH0514P08.8	uc003uzj.3	Q96SN7	OTTHUMG00000157722	ENST00000356387.2:c.119C>T	7.37:g.102079522C>T	ENSP00000348752:p.Ser40Phe		101866527	Q6IA68|Q8WY94|Q9H9Y3	Missense_Mutation	SNP	ENST00000356387.2	37	CCDS5722.1	.	.	.	.	.	.	.	.	.	.	C	21.4	4.142524	0.77888	.	.	ENSG00000160991	ENST00000495936;ENST00000356387;ENST00000478730;ENST00000468241;ENST00000403646;ENST00000498661;ENST00000473939	T;T;T;T;T;T;T	0.47869	1.44;1.44;1.44;1.43;1.44;0.83;1.44	4.54	4.54	0.55810	.	0.000000	0.85682	D	0.000000	T	0.32585	0.0834	N	0.24115	0.695	0.58432	D	0.99999	P	0.40302	0.712	B	0.34824	0.19	T	0.12319	-1.0552	9	.	.	.	-3.2051	16.4438	0.83909	0.0:1.0:0.0:0.0	.	40	Q96SN7	ORAI2_HUMAN	F	40	ENSP00000420178:S40F;ENSP00000348752:S40F;ENSP00000418140:S40F;ENSP00000417407:S40F;ENSP00000385489:S40F;ENSP00000418464:S40F;ENSP00000417928:S40F	.	S	+	2	0	ORAI2	101866527	1.000000	0.71417	1.000000	0.80357	0.983000	0.72400	4.712000	0.61888	2.349000	0.79799	0.563000	0.77884	TCT		0.647	ORAI2-201	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000349509.2	NM_032831	
ZNF7	7553	broad.mit.edu	37	8	146068062	146068062	+	Missense_Mutation	SNP	C	C	T			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chr8:146068062C>T	ENST00000528372.1	+	5	1810	c.1570C>T	c.(1570-1572)Ccc>Tcc	p.P524S	ZNF7_ENST00000325241.6_Missense_Mutation_p.P524S|ZNF7_ENST00000325217.5_Intron|ZNF7_ENST00000544249.1_Missense_Mutation_p.P428S|ZNF7_ENST00000525266.1_Intron|ZNF7_ENST00000446747.2_Missense_Mutation_p.P535S			P17097	ZNF7_HUMAN	zinc finger protein 7	524					multicellular organismal development (GO:0007275)|regulation of transcription, DNA-templated (GO:0006355)|transcription, DNA-templated (GO:0006351)	nucleus (GO:0005634)	DNA binding (GO:0003677)|metal ion binding (GO:0046872)|sequence-specific DNA binding transcription factor activity (GO:0003700)	p.P524S(1)		endometrium(2)|kidney(1)|large_intestine(7)|lung(6)|ovary(5)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	25	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.0812)|Ovarian(118;0.0822)|Acute lymphoblastic leukemia(644;0.143)	Epithelial(56;8.75e-39)|OV - Ovarian serous cystadenocarcinoma(54;1.13e-38)|all cancers(56;8.48e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;2.11e-07)		AGGAGAGAAGCCCTACGAATG	0.448																																																1	Substitution - Missense(1)	ovary(1)	8											79.0	85.0	83.0					8																	146068062		2203	4300	6503	146038866	SO:0001583	missense	7553			AB209619	CCDS6435.1, CCDS64996.1, CCDS64998.1, CCDS64999.1	8q24	2013-01-08	2006-05-09		ENSG00000147789	ENSG00000147789		"""Zinc fingers, C2H2-type"", ""-"""	13139	protein-coding gene	gene with protein product		194531	"""zinc finger protein 7 (KOX 4, clone HF.16)"""			2106481, 1946370	Standard	NM_003416		Approved	KOX4, HF.16	uc003zeg.4	P17097	OTTHUMG00000165200	ENST00000528372.1:c.1570C>T	8.37:g.146068062C>T	ENSP00000432724:p.Pro524Ser		146038866	B4DT08|D3DWN6|P17015|Q8N8Y4	Missense_Mutation	SNP	ENST00000528372.1	37	CCDS6435.1	.	.	.	.	.	.	.	.	.	.	C	18.66	3.671079	0.67814	.	.	ENSG00000147789	ENST00000325241;ENST00000446747;ENST00000544249;ENST00000528372	T;T;T;T	0.28454	1.61;1.61;1.61;1.61	4.75	4.75	0.60458	Zinc finger, C2H2 (1);Zinc finger, C2H2-type/integrase, DNA-binding (1);	0.000000	0.46758	D	0.000274	T	0.50154	0.1599	L	0.54863	1.705	0.80722	D	1	D;D	0.76494	0.999;0.999	D;D	0.74674	0.984;0.984	T	0.42241	-0.9463	9	.	.	.	-16.9102	16.6673	0.85256	0.0:1.0:0.0:0.0	.	535;524	B4DT08;P17097	.;ZNF7_HUMAN	S	524;535;428;524	ENSP00000320627:P524S;ENSP00000393260:P535S;ENSP00000439424:P428S;ENSP00000432724:P524S	.	P	+	1	0	ZNF7	146038866	0.621000	0.27077	0.942000	0.38095	0.866000	0.49608	2.500000	0.45381	2.462000	0.83206	0.655000	0.94253	CCC		0.448	ZNF7-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000382660.1	NM_003416	
ACRC	93953	broad.mit.edu	37	X	70823893	70823893	+	Missense_Mutation	SNP	G	G	A			TCGA-13-0899-01A-01W-0420-08	TCGA-13-0899-10A-01D-0399-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	ae9e84ab-7e0f-42f5-a0a3-94a0011dbd80	3dfe5db0-29ec-40ba-8a59-53b1cbf903cc	g.chrX:70823893G>A	ENST00000373695.1	+	7	1303	c.766G>A	c.(766-768)Gac>Aac	p.D256N	ACRC_ENST00000373696.3_Missense_Mutation_p.D256N			Q96QF7	ACRC_HUMAN	acidic repeat containing	256	Asp/Ser-rich.					nucleus (GO:0005634)		p.D256N(1)		autonomic_ganglia(1)|breast(1)|endometrium(15)|kidney(4)|large_intestine(4)|lung(20)|ovary(5)|prostate(1)|skin(2)|stomach(1)	54	Renal(35;0.156)					GGAAGCTCCCGACGACAGCAG	0.562																																																1	Substitution - Missense(1)	ovary(1)	X											36.0	33.0	34.0					X																	70823893		1532	3179	4711	70740618	SO:0001583	missense	93953			AJ311392	CCDS35326.1	Xq13.1	2010-08-05			ENSG00000147174	ENSG00000147174			15805	protein-coding gene	gene with protein product		300369					Standard	NM_052957		Approved		uc004eae.2	Q96QF7	OTTHUMG00000033327	ENST00000373695.1:c.766G>A	X.37:g.70823893G>A	ENSP00000362799:p.Asp256Asn		70740618	B9EG62	Missense_Mutation	SNP	ENST00000373695.1	37	CCDS35326.1	.	.	.	.	.	.	.	.	.	.	G	10.60	1.396470	0.25205	.	.	ENSG00000147174	ENST00000373696;ENST00000373695	T;T	0.37752	1.18;1.18	0.14	0.14	0.14804	.	.	.	.	.	T	0.17704	0.0425	N	0.19112	0.55	0.09310	N	1	D	0.57571	0.98	B	0.37780	0.258	T	0.13629	-1.0502	9	0.36615	T	0.2	.	5.9727	0.19361	6.0E-4:0.0:0.9994:0.0	.	256	Q96QF7	ACRC_HUMAN	N	256	ENSP00000362800:D256N;ENSP00000362799:D256N	ENSP00000362799:D256N	D	+	1	0	ACRC	70740618	0.001000	0.12720	0.006000	0.13384	0.006000	0.05464	0.108000	0.15396	0.168000	0.19655	0.169000	0.16792	GAC		0.562	ACRC-002	KNOWN	alternative_5_UTR|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000081856.1		
