Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
PRAMEF12	390999	genome.wustl.edu	36	1	12759868	12759868	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	1	12759868	12759868	C	A	SNP	PRAMEF12	NM_001080830	human	genbank	54_36p	1	provisional	missense	c.991	p.L331M	0.03	NULL	-	-	no_errors
CELA2A	63036	genome.wustl.edu	36	1	15665172	15665172	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	1	15665172	15665172	C	T	SNP	ELA2A	NM_033440	human	genbank	54_36p	1	reviewed	silent	c.585	p.S195	0.07	NULL	-	-	no_errors
ASTN1	460	genome.wustl.edu	36	1	175181690	175181705	+	Frame_Shift_Del	DEL	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	-		Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	-	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	1	175181690	175181705	TGTTCCTTTCAGCACC	-	DEL	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	frame_shift_del	c.2244_2229	p.Q743fs	0.969:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_Fibronectin type III,superfamily_EGF/Laminin	(deletion:cds_exon[175181685,175181879])	no_errors
LAMC1	3915	genome.wustl.edu	36	1	181360492	181360492	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	1	181360492	181360492	T	A	SNP	LAMC1	NM_002293	human	genbank	54_36p	1	reviewed	missense	c.2505	p.D835E	1	HMMPfam_Laminin_EGF	HMMPfam_Laminin_B;HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Growth factor receptor domain;superfamily_EGF/Laminin	-	no_errors
PLD5	200150	genome.wustl.edu	36	1	240354478	240354478	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	1	240354478	240354478	C	A	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.572	p.W191L	1	NULL	-	-	no_errors
IQCC	55721	genome.wustl.edu	36	1	32444411	32444411	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	1	32444411	32444411	C	G	SNP	IQCC	NM_018134	human	genbank	54_36p	1	provisional	missense	c.112	p.R38G	0.74	NULL	-	-	no_errors
SFPQ	6421	genome.wustl.edu	36	1	35427386	35427394	+	In_Frame_Del	DEL	GATTTGCCT	GATTTGCCT	-		Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GATTTGCCT	GATTTGCCT	GATTTGCCT	-	GATTTGCCT	GATTTGCCT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	1	35427386	35427394	GATTTGCCT	-	DEL	SFPQ	NM_005066	human	genbank	54_36p	-1	validated	in_frame_del	c.1600_1592	p.QAN531in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000	NULL	HMMPfam_RRM_1,HMMPfam_NOPS,superfamily_RNA-binding domain RBD	(deletion:cds_exon[35427374,35427570])	no_errors
CUBN	8029	genome.wustl.edu	36	10	17020969	17020969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	10	17020969	17020969	C	G	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.5732	p.R1911T	1	HMMPfam_CUB	HMMPfam_CUB;superfamily_Spermadhesin CUB domain;HMMPfam_EGF;HMMPfam_EGF_CA;superfamily_EGF/Laminin	-	no_errors
DLG5	9231	genome.wustl.edu	36	10	79246325	79246325	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	10	79246325	79246325	T	G	SNP	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	silent	c.4015	p.R1339	0.96	NULL	-	-	no_errors
FLI1	2313	genome.wustl.edu	36	11	128185583	128185583	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	11	128185583	128185583	G	A	SNP	FLI1	NM_002017	human	genbank	54_36p	1	validated	silent	c.849	p.L283	1	HMMPfam_Ets	"HMMPfam_Ets;HMMPfam_SAM_PNT;superfamily_SAM/Pointed domain;superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
SLC1A2	6506	genome.wustl.edu	36	11	35265049	35265055	+	Frame_Shift_Del	DEL	GAAAGGT	GAAAGGT	-		Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GAAAGGT	GAAAGGT	GAAAGGT	-	GAAAGGT	GAAAGGT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	11	35265049	35265055	GAAAGGT	-	DEL	SLC1A2	NM_004171	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1117_1111	p.T371fs	1.000:1.000:1.000:1.000:0.998:1.000:1.000	HMMPfam_SDF	HMMPfam_SDF	(deletion:cds_exon[35264880,35265074])	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42132705	42132705	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	12	42132705	42132705	A	G	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	silent	c.1821	p.T607	1	HMMPfam_TSP_1	"superfamily_Metalloproteases (""zincins"") catalytic domain;superfamily_TSP-1 type 1 repeat;TSP_1;HMMPfam_TSP_1;Reprolysin;HMMPfam_Reprolysin;Pep_M12B_propep;HMMPfam_Pep_M12B_propep;ADAM_spacer1;HMMPfam_ADAM_spacer1;GON;HMMPfam_GON"	-	no_errors
LOC401717	401717	genome.wustl.edu	36	12	42341041	42341041	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	12	42341041	42341041	C	T	SNP	LOC401717	XR_016218	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KRT6A	3853	genome.wustl.edu	36	12	51173148	51173148	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	12	51173148	51173148	G	C	SNP	KRT6A	NM_005554	human	genbank	54_36p	-1	reviewed	missense	c.92	p.S31C	0.15	NULL	-	-	no_errors
NOP2	4839	genome.wustl.edu	36	12	6545552	6545552	+	Silent	SNP	A	C	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	12	6545552	6545552	A	C	SNP	NOP2	NM_001033714	human	genbank	54_36p	-1	validated	silent	c.438	p.S146		NULL	-	-	no_errors
LNX2	222484	genome.wustl.edu	36	13	27053767	27053767	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	13	27053767	27053767	T	A	SNP	LNX2	NM_153371	human	genbank	54_36p	-1	validated	missense	c.74	p.E25V	1	NULL	HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_zf-C3HC4;superfamily_TRAF domain-like;superfamily_RING/U-box	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104482768	104482768	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	14	104482768	104482768	G	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.10065	p.D3355E		NULL	-	-	no_errors
EXOC5	10640	genome.wustl.edu	36	14	56768188	56768188	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	14	56768188	56768188	T	C	SNP	EXOC5	NM_006544	human	genbank	54_36p	-1	reviewed	splice_site	c.939-2	e11-2	1	-	-	-	no_errors
ENSG00000181984	0	genome.wustl.edu	36	15	19037934	19037934	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	15	19037934	19037934	G	A	SNP	ENSG00000181984	ENST00000318268	human	ensembl	54_36p	1	known	silent	c.1650	p.V550	0	NULL	-	-	no_errors
ELL3	80237	genome.wustl.edu	36	15	41853752	41853752	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	15	41853752	41853752	G	A	SNP	ELL3	NM_025165	human	genbank	54_36p	-1	validated	missense	c.958	p.R320C	0.86	NULL	-	-	no_errors
GABPB1	2553	genome.wustl.edu	36	15	48383548	48383549	+	Missense_Mutation	DNP	AC	TA	TA	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	AC	AC	TA	TA	AC	AC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	15	48383548	48383549	AC	TA	DNP	GABPB1	NM_005254	human	genbank	54_36p	-1	reviewed	missense	c.183_182	p.G61V	0.997:1.000	NULL	-	-	no_errors
TNRC6A	27327	genome.wustl.edu	36	16	24710529	24710530	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GG	GG	GG	TT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	16	24710529	24710530	GG	TT	DNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.3065_3066	p.W1022F	1.000:1.000	NULL	-	-	no_errors
SLC12A3	6559	genome.wustl.edu	36	16	55471577	55471577	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	16	55471577	55471577	G	T	SNP	SLC12A3	NM_000339	human	genbank	54_36p	1	reviewed	missense	c.1478	p.G493V	1	NULL	-	-	no_errors
ZFHX3	463	genome.wustl.edu	36	16	71379382	71379382	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	16	71379382	71379382	A	T	SNP	ZFHX3	NM_006885	human	genbank	54_36p	-1	validated	missense	c.10294	p.S3432T	1	NULL	HMMPfam_Homeobox,HMMPfam_zf-C2H2,superfamily_Homeodomain-like,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MYO19	80179	genome.wustl.edu	36	17	31957639	31957639	+	Silent	SNP	C	C	A		Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	17	31957639	31957639	C	A	SNP	MYO19	NM_025109	human	genbank	54_36p	-1	validated	silent	c.156	p.L52	1	NULL	-	-	no_errors
C17orf71	55181	genome.wustl.edu	36	17	54643302	54643302	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	17	54643302	54643302	C	T	SNP	C17orf71	NM_018149	human	genbank	54_36p	1	validated	missense	c.1108	p.P370S	0.99	NULL	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	17	7518264	7518264	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.742	p.R248W	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75964249	75964249	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	17	75964249	75964249	T	A	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.7388	p.L2463H	0.51	NULL	HMMPfam_zf-C3HC4;superfamily_P-loop containing nucleoside triphosphate hydrolases;superfamily_Nickel-iron hydrogenase small subunit;superfamily_RING/U-box	-	no_errors
ALOX15B	247	genome.wustl.edu	36	17	7889617	7889617	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	17	7889617	7889617	C	T	SNP	ALOX15B	NM_001141	human	genbank	54_36p	1	reviewed	missense	c.1088	p.A363V	0.04	HMMPfam_Lipoxygenase	HMMPfam_PLAT;HMMPfam_Lipoxygenase;superfamily_Lipoxigenase;superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)	-	no_errors
DSC2	1824	genome.wustl.edu	36	18	26920671	26920671	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	18	26920671	26920671	T	A	SNP	DSC2	NM_024422	human	genbank	54_36p	-1	reviewed	nonsense	c.808	p.K270*	0.32	HMMPfam_Cadherin	HMMPfam_Cadherin;HMMPfam_Cadherin_pro;superfamily_Cadherin-like	-	no_errors
P2RY11	5032	genome.wustl.edu	36	19	10085364	10085364	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	19	10085364	10085364	G	C	SNP	P2RY11	NM_002566	human	genbank	54_36p	1	reviewed	silent	c.75	p.G25		NULL	HMMPfam_7tm_1;superfamily_Family A G protein-coupled receptor-like	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45046321	45046321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	19	45046321	45046321	C	T	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.15988	p.V5330M	0.01	HMMPfam_VWD	HMMPfam_VWD;HMMPfam_TIL;superfamily_Serine proterase inhibitors;HMMPfam_TIL_assoc;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_DUF1787;superfamily_EGF/Laminin	-	no_errors
MAMSTR	284358	genome.wustl.edu	36	19	53908385	53908385	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	19	53908385	53908385	G	A	SNP	FLJ36070	NM_182574	human	genbank	54_36p	-1	validated	missense	c.890	p.S297F	0.97	NULL	-	-	no_errors
ETAA1	54465	genome.wustl.edu	36	2	67485182	67485182	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	2	67485182	67485182	C	G	SNP	ETAA1	NM_019002	human	genbank	54_36p	1	validated	missense	c.1864	p.Q622E	0.97	NULL	-	-	no_errors
CPXM1	56265	genome.wustl.edu	36	20	2726850	2726850	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	20	2726850	2726850	G	A	SNP	CPXM1	NM_019609	human	genbank	54_36p	-1	reviewed	missense	c.538	p.H180Y	0.01	NULL	-	-	no_errors
MYT1	4661	genome.wustl.edu	36	20	62342189	62342189	+	Missense_Mutation	SNP	G	G	C		Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	20	62342189	62342189	G	C	SNP	MYT1	NM_004535	human	genbank	54_36p	1	reviewed	missense	c.3310	p.E1104Q	0.999	NULL	HMMPfam_zf-C2HC,HMMPfam_MYT1,superfamily_CCHHC domain	-	no_errors
KRTAP13-3	337960	genome.wustl.edu	36	21	30719843	30719843	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	21	30719843	30719843	T	G	SNP	KRTAP13-3	NM_181622	human	genbank	54_36p	-1	provisional	missense	c.259	p.M87L		NULL	-	-	no_errors
ATP5O	539	genome.wustl.edu	36	21	34206471	34206471	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	21	34206471	34206471	T	C	SNP	ATP5O	NM_001697	human	genbank	54_36p	-1	reviewed	missense	c.190	p.R64G	0.46	HMMPfam_OSCP	HMMPfam_OSCP;superfamily_N-terminal domain of the delta subunit of the F1F0-ATP synthase	-	no_errors
ERG	2078	genome.wustl.edu	36	21	38677670	38677670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	21	38677670	38677670	G	A	SNP	ERG	NM_182918	human	genbank	54_36p	-1	validated	missense	c.965	p.S322L	1	HMMPfam_Ets	Ets;HMMPfam_Ets;SAM_PNT;HMMPfam_SAM_PNT	-	no_errors
PAK2	5062	genome.wustl.edu	36	3	197993936	197993936	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	3	197993936	197993936	G	A	SNP	PAK2	NM_002577	human	genbank	54_36p	1	reviewed	missense	c.22	p.E8K	1	NULL	HMMPfam_PBD;HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);superfamily_Wiscott-Aldrich syndrome protein WASP C-terminal domain	-	no_errors
PXK	54899	genome.wustl.edu	36	3	58343280	58343280	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	3	58343280	58343280	G	T	SNP	PXK	NM_017771	human	genbank	54_36p	1	provisional	splice_site	c.202-1	e4-1	1	-	-	-	no_errors
ALPK1	80216	genome.wustl.edu	36	4	113571611	113571611	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	4	113571611	113571611	G	A	SNP	ALPK1	NM_001102406	human	genbank	54_36p	1	validated	missense	c.1459	p.G487R	0.94	NULL	-	-	no_errors
MTNR1A	4543	genome.wustl.edu	36	4	187692302	187692302	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	4	187692302	187692302	G	T	SNP	MTNR1A	NM_005958	human	genbank	54_36p	-1	reviewed	missense	c.588	p.F196L	0.96	NULL	-	-	no_errors
C4orf35	85438	genome.wustl.edu	36	4	71236407	71236407	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	4	71236407	71236407	G	C	SNP	C4orf35	NM_033122	human	genbank	54_36p	1	validated	missense	c.1062	p.K354N		NULL	-	-	no_errors
SHROOM3	57619	genome.wustl.edu	36	4	77880205	77880214	+	Frame_Shift_Del	DEL	TCTTCCAGGC	TCTTCCAGGC	-		Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	TCTTCCAGGC	TCTTCCAGGC	TCTTCCAGGC	-	TCTTCCAGGC	TCTTCCAGGC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	4	77880205	77880214	TCTTCCAGGC	-	DEL	SHROOM3	NM_020859	human	genbank	54_36p	1	validated	frame_shift_del	c.1852_1861	p.S619fs	0.000:0.002:0.010:0.013:0.000:0.000:0.000:0.003:0.024:0.021	NULL	HMMPfam_PDZ,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	(deletion:cds_exon[77878938,77882103])	no_errors
HERC5	51191	genome.wustl.edu	36	4	89626399	89626399	+	Silent	SNP	T	C	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	4	89626399	89626399	T	C	SNP	HERC5	NM_016323	human	genbank	54_36p	1	reviewed	silent	c.1848	p.T616		NULL	-	-	no_errors
PCDHB9	56127	genome.wustl.edu	36	5	140547554	140547554	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	5	140547554	140547554	C	A	SNP	PCDHB9	NM_019119	human	genbank	54_36p	1	reviewed	missense	c.478	p.P160T	0.25	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ATP10B	23120	genome.wustl.edu	36	5	159980215	159980215	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	5	159980215	159980215	G	A	SNP	ATP10B	NM_025153	human	genbank	54_36p	-1	validated	silent	c.2133	p.A711		NULL	-	-	no_errors
LOC728707	728707	genome.wustl.edu	36	5	37542684	37542684	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	5	37542684	37542684	G	A	SNP	LOC728707	XR_015588	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HIST1H3B	8358	genome.wustl.edu	36	6	26140117	26140117	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	6	26140117	26140117	C	G	SNP	HIST1H3B	NM_003537	human	genbank	54_36p	-1	reviewed	missense	c.151	p.E51Q	1	NULL	-	-	no_errors
SYNGAP1	8831	genome.wustl.edu	36	6	33518684	33518684	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	6	33518684	33518684	A	T	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	nonsense	c.2332	p.K778*	0.96	NULL	HMMPfam_C2;HMMPfam_PH;HMMPfam_RasGAP;superfamily_GTPase activation domain GAP;superfamily_C2 domain (Calcium/lipid-binding domain CaLB);superfamily_PH domain-like	-	no_errors
C6orf106	64771	genome.wustl.edu	36	6	34682583	34682583	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	6	34682583	34682583	C	A	SNP	C6orf106	NM_024294	human	genbank	54_36p	-1	validated	silent	c.588	p.T196	1	NULL	-	-	no_errors
UHRF1BP1	54887	genome.wustl.edu	36	6	34934072	34934072	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	6	34934072	34934072	T	A	SNP	UHRF1BP1	NM_017754	human	genbank	54_36p	1	validated	missense	c.1961	p.V654D	0.43	NULL	-	-	no_errors
C6orf142	90523	genome.wustl.edu	36	6	54203568	54203568	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	6	54203568	54203568	C	T	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	missense	c.1211	p.S404L	0.01	NULL	-	-	no_errors
LAMB1	3912	genome.wustl.edu	36	7	107379875	107379875	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	7	107379875	107379875	G	T	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.3109	p.Q1037K	0.27	HMMPfam_Laminin_EGF	superfamily_EGF/Laminin;HMMPfam_Laminin_EGF;HMMPfam_Laminin_N;superfamily_Galactose-binding domain-like;superfamily_Prefoldin	-	no_errors
DENND2A	27147	genome.wustl.edu	36	7	139890930	139890930	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	7	139890930	139890930	G	T	SNP	DENND2A	NM_015689	human	genbank	54_36p	-1	validated	missense	c.2284	p.L762M	1	HMMPfam_DENN	HMMPfam_DENN;HMMPfam_dDENN;HMMPfam_uDENN	-	no_errors
ELN	2006	genome.wustl.edu	36	7	73112446	73112446	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	7	73112446	73112446	G	A	SNP	ELN	ENST00000380562	human	ensembl	54_36p	1	known	missense	c.1540	p.A514T	0.34	NULL	-	-	no_stop_codon
MAGI2	9863	genome.wustl.edu	36	7	77723362	77723362	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	7	77723362	77723362	C	G	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	silent	c.1881	p.R627	1	NULL	HMMPfam_WW;superfamily_WW domain;HMMPfam_PDZ;superfamily_PDZ domain-like;HMMPfam_Guanylate_kin;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DPYS	1807	genome.wustl.edu	36	8	105528874	105528874	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	8	105528874	105528874	T	C	SNP	DPYS	NM_001385	human	genbank	54_36p	-1	reviewed	missense	c.457	p.K153E	0.99	HMMPfam_Amidohydro_1	HMMPfam_Amidohydro_1;superfamily_Composite domain of metallo-dependent hydrolases;superfamily_Metallo-dependent hydrolases	-	no_errors
OC90	729330	genome.wustl.edu	36	8	133114486	133114486	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	8	133114486	133114486	C	A	SNP	OC90	NM_001080399	human	genbank	54_36p	-1	validated	nonsense	c.841	p.E281*		NULL	-	-	no_errors
KIFC2	90990	genome.wustl.edu	36	8	145663461	145663461	+	Missense_Mutation	SNP	G	G	A		Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	8	145663461	145663461	G	A	SNP	KIFC2	NM_145754	human	genbank	54_36p	1	provisional	missense	c.398	p.S133N	0.082	NULL	HMMPfam_Kinesin,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	2863527	2863531	+	Frame_Shift_Del	DEL	CGTTC	CGTTC	-		Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	CGTTC	CGTTC	CGTTC	-	CGTTC	CGTTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	8	2863527	2863531	CGTTC	-	DEL	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	frame_shift_del	c.7912_7908	p.W2636fs	0.105:0.991:0.991:0.855:1.000	NULL	-	(deletion:cds_exon[2863406,2863579])	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZFHX4	79776	genome.wustl.edu	36	8	77926296	77926296	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	8	77926296	77926296	T	A	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	missense	c.4449	p.N1483K	1	NULL	-	-	no_errors
PSKH2	85481	genome.wustl.edu	36	8	87145407	87145407	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	8	87145407	87145407	G	T	SNP	PSKH2	NM_033126	human	genbank	54_36p	-1	provisional	missense	c.755	p.T252K	0.99	HMMPfam_Pkinase	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like)	-	no_errors
CDH17	1015	genome.wustl.edu	36	8	95241470	95241470	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	8	95241470	95241470	T	C	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	missense	c.1456	p.K486E	1	HMMPfam_Cadherin	HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
ENSG00000204562	0	genome.wustl.edu	36	9	83722276	83722276	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	9	83722276	83722276	T	G	SNP	ENSG00000204562	ENST00000376459	human	ensembl	54_36p	1	known	missense	c.149	p.L50R		NULL	-	-	no_errors
ADAMTSL1	92949	genome.wustl.edu	36	9	18612344	18612344	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	9	18612344	18612344	A	C	SNP	ADAMTSL1	NM_001040272	human	genbank	54_36p	1	validated	missense	c.578	p.K193T	1	NULL	-	-	no_errors
GPR112	139378	genome.wustl.edu	36	X	135255177	135255177	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	586101df-93c9-4d0b-ba0e-58df7a2f9598	0d429d7f-2655-4757-b6f1-42d3daa55bbb	X	135255177	135255177	C	T	SNP	GPR112	NM_153834	human	genbank	54_36p	1	validated	missense	c.1646	p.S549L		NULL	HMMPfam_GPS;HMMPfam_7tm_2;superfamily_Concanavalin A-like lectins/glucanases;superfamily_Family A G protein-coupled receptor-like	-	no_errors
