Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
PADI2	11240	genome.wustl.edu	36	1	17291556	17291556	+	Missense_Mutation	SNP	C	C	T		Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	1	17291556	17291556	C	T	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	missense	c.589	p.G197R	0.984	NULL	-	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25926869	25926869	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	10	25926869	25926869	T	C	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	missense	c.2308	p.S770P	1	NULL	HMMPfam_7tm_3;superfamily_EGF/Laminin	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55286974	55286974	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	10	55286974	55286974	G	T	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	missense	c.3773	p.T1258N	0.98	NULL	HMMPfam_Cadherin;superfamily_Cadherin-like	-	no_errors
FAR1	84188	genome.wustl.edu	36	11	13705692	13705692	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	11	13705692	13705692	A	T	SNP	FAR1	NM_032228	human	genbank	54_36p	1	validated	missense	c.1271	p.D424V	1	NULL	-	-	no_errors
TTC9C	283237	genome.wustl.edu	36	11	62253040	62253040	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	11	62253040	62253040	G	T	SNP	TTC9C	NM_173810	human	genbank	54_36p	1	provisional	silent	c.144	p.P48		NULL	-	-	no_errors
DAO	1610	genome.wustl.edu	36	12	107805409	107805409	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	12	107805409	107805409	C	T	SNP	DAO	NM_001917	human	genbank	54_36p	1	reviewed	silent	c.249	p.N83	0.65	HMMPfam_DAO	HMMPfam_DAO;superfamily_Nucleotide-binding domain;superfamily_FAD-linked reductases C-terminal domain	-	no_errors
PRICKLE1	144165	genome.wustl.edu	36	12	41144824	41144824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	12	41144824	41144824	G	C	SNP	PRICKLE1	NM_153026	human	genbank	54_36p	-1	validated	missense	c.1279	p.L427V	1	NULL	HMMPfam_LIM;HMMPfam_PET;superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
KRT79	338785	genome.wustl.edu	36	12	51504354	51504354	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	12	51504354	51504354	G	T	SNP	KRT79	NM_175834	human	genbank	54_36p	-1	validated	missense	c.915	p.N305K	1	NULL	HMMPfam_Filament;superfamily_Prefoldin;superfamily_STAT;superfamily_Tubulin chaperone cofactor A	-	no_errors
LRIG3	121227	genome.wustl.edu	36	12	57560777	57560777	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	12	57560777	57560777	G	C	SNP	LRIG3	NM_153377	human	genbank	54_36p	-1	provisional	missense	c.1654	p.L552V	1	NULL	-	-	no_errors
PLEK2	26499	genome.wustl.edu	36	14	66931898	66931898	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	14	66931898	66931898	G	A	SNP	PLEK2	NM_016445	human	genbank	54_36p	-1	provisional	silent	c.363	p.F121	1	NULL	"HMMPfam_DEP;HMMPfam_PH;superfamily_""Winged helix"" DNA-binding domain;superfamily_PH domain-like"	-	no_errors
NUMB	8650	genome.wustl.edu	36	14	72813133	72813133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	14	72813133	72813133	G	A	SNP	NUMB	NM_001005743	human	genbank	54_36p	-1	reviewed	missense	c.1862	p.A621V	1	NULL	HMMPfam_PID;HMMPfam_NumbF;superfamily_PH domain-like	-	no_errors
CDH13	1012	genome.wustl.edu	36	16	81808467	81808467	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	16	81808467	81808467	G	T	SNP	CDH13	NM_001257	human	genbank	54_36p	1	reviewed	missense	c.500	p.R167M	1	HMMPfam_Cadherin	HMMPfam_Cadherin;HMMPfam_Cadherin_pro;superfamily_Cadherin-like	-	no_errors
CDH13	1012	genome.wustl.edu	36	16	81808476	81808476	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	16	81808476	81808476	G	T	SNP	CDH13	NM_001257	human	genbank	54_36p	1	reviewed	missense	c.509	p.R170M	1	HMMPfam_Cadherin	HMMPfam_Cadherin;HMMPfam_Cadherin_pro;superfamily_Cadherin-like	-	no_errors
RAP1GAP2	23108	genome.wustl.edu	36	17	2876141	2876141	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	17	2876141	2876141	C	T	SNP	GARNL4	NM_015085	human	genbank	54_36p	1	validated	missense	c.1841	p.P614L	1	NULL	HMMPfam_Rap_GAP;superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	A	A	rs28934573	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	17	7518284	7518284	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.722	p.S241F	1	HMMPfam_P53	superfamily_p53-like transcription factors;superfamily_p53 tetramerization domain;P53_tetramer;HMMPfam_P53_tetramer;P53;HMMPfam_P53;P53_TAD;HMMPfam_P53_TAD	-	no_errors
FARSA	2193	genome.wustl.edu	36	19	12902497	12902497	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	19	12902497	12902497	G	A	SNP	FARSA	NM_004461	human	genbank	54_36p	-1	validated	missense	c.214	p.R72W	1	NULL	"HMMPfam_tRNA-synt_2d;HMMPfam_HTH_11;superfamily_""Winged helix"" DNA-binding domain;superfamily_Class II aaRS and biotin synthetases"	-	no_errors
MFSD9	84804	genome.wustl.edu	36	2	102701787	102701787	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	2	102701787	102701787	G	A	SNP	MFSD9	NM_032718	human	genbank	54_36p	-1	validated	missense	c.949	p.R317W	0.99	NULL	-	-	no_errors
PGAP1	80055	genome.wustl.edu	36	2	197489528	197489528	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	2	197489528	197489528	T	C	SNP	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	silent	c.336	p.A112	1	HMMPfam_PGAP1	HMMPfam_PGAP1;superfamily_alpha/beta-Hydrolases	-	no_errors
FAM117B	150864	genome.wustl.edu	36	2	203338550	203338550	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	2	203338550	203338550	A	T	SNP	FAM117B	NM_173511	human	genbank	54_36p	1	validated	nonsense	c.856	p.K286*	1	NULL	-	-	no_errors
VWA3B	200403	genome.wustl.edu	36	2	98233285	98233285	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	2	98233285	98233285	A	G	SNP	VWA3B	NM_144992	human	genbank	54_36p	1	provisional	missense	c.2746	p.N916D	0.95	NULL	-	-	no_errors
NCAM2	4685	genome.wustl.edu	36	21	21574817	21574817	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	21	21574817	21574817	G	C	SNP	NCAM2	NM_004540	human	genbank	54_36p	1	reviewed	missense	c.104	p.G35A	1	HMMPfam_I-set	HMMPfam_fn3;superfamily_Fibronectin type III;HMMPfam_I-set;HMMPfam_ig;superfamily_Immunoglobulin	-	no_errors
TTC3	7267	genome.wustl.edu	36	21	37418871	37418871	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	21	37418871	37418871	A	G	SNP	TTC3	NM_001001894	human	genbank	54_36p	1	validated	missense	c.1192	p.I398V	0.02	NULL	HMMPfam_TPR_1;HMMPfam_zf-C3HC4;superfamily_DEATH domain;HMMPfam_TPR_2;superfamily_Spectrin repeat;superfamily_TPR-like;superfamily_RING/U-box	-	no_errors
CBX7	23492	genome.wustl.edu	36	22	37859983	37859983	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	22	37859983	37859983	G	T	SNP	CBX7	NM_175709	human	genbank	54_36p	-1	validated	silent	c.615	p.A205	0.67	NULL	HMMPfam_Chromo;superfamily_Chromo domain-like	-	no_errors
KIAA1644	85352	genome.wustl.edu	36	22	43024013	43024013	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	22	43024013	43024013	C	T	SNP	KIAA1644	NM_001099294	human	genbank	54_36p	-1	predicted	silent	c.153	p.S51	0.89	NULL	-	-	no_errors
CADM2	253559	genome.wustl.edu	36	3	85858344	85858344	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	3	85858344	85858344	A	G	SNP	CADM2	NM_153184	human	genbank	54_36p	1	validated	missense	c.23	p.N8S	1	NULL	-	-	no_errors
CAMK2D	817	genome.wustl.edu	36	4	114600794	114600794	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	4	114600794	114600794	A	C	SNP	CAMK2D	NM_001221	human	genbank	54_36p	-1	reviewed	missense	c.1162	p.L388V	1	HMMPfam_CaMKII_AD	HMMPfam_Pkinase;superfamily_Protein kinase-like (PK-like);HMMPfam_CaMKII_AD	-	no_errors
LRBA	987	genome.wustl.edu	36	4	151612283	151612283	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	4	151612283	151612283	A	T	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.6643	p.W2215R	1	HMMPfam_Beach	HMMPfam_Beach;HMMPfam_WD40;superfamily_Concanavalin A-like lectins/glucanases;HMMPfam_DUF1088;superfamily_WD40 repeat-like;superfamily_ARM repeat;superfamily_PH domain-like;superfamily_BEACH domain	-	no_errors
PPP2CA	5515	genome.wustl.edu	36	5	133565562	133565562	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	5	133565562	133565562	C	G	SNP	PPP2CA	NM_002715	human	genbank	54_36p	-1	reviewed	missense	c.362	p.R121T	1	HMMPfam_Metallophos	HMMPfam_Metallophos;superfamily_Metallo-dependent phosphatases	-	no_errors
PCDHB9	56127	genome.wustl.edu	36	5	140549022	140549022	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	5	140549022	140549022	G	A	SNP	PCDHB9	NM_019119	human	genbank	54_36p	1	reviewed	missense	c.1946	p.S649N	0.48	NULL	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NNT	23530	genome.wustl.edu	36	5	43691842	43691842	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	5	43691842	43691842	G	A	SNP	NNT	NM_012343	human	genbank	54_36p	1	reviewed	missense	c.2203	p.A735T	1	HMMPfam_PNTB	HMMPfam_PNTB;HMMPfam_AlaDh_PNT_C;HMMPfam_AlaDh_PNT_N;superfamily_NAD(P)-binding Rossmann-fold domains;superfamily_Formate/glycerate dehydrogenase catalytic domain-like;superfamily_DHS-like NAD/FAD-binding domain	-	no_errors
SOBP	55084	genome.wustl.edu	36	6	108061758	108061758	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	6	108061758	108061758	C	A	SNP	SOBP	NM_018013	human	genbank	54_36p	1	validated	missense	c.1017	p.N339K	1	NULL	-	-	no_errors
MCM9	254394	genome.wustl.edu	36	6	119280502	119280502	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	6	119280502	119280502	G	A	SNP	MCM9	NM_153255	human	genbank	54_36p	-1	reviewed	missense	c.827	p.S276L	0.05	NULL	HMMPfam_MCM;superfamily_Nucleic acid-binding proteins;superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CYP21A2	1589	genome.wustl.edu	36	6	32114194	32114196	+	In_Frame_Del	DEL	CTG	CTG	-		Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	CTG	CTG	CTG	-	CTG	CTG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	6	32114194	32114196	CTG	-	DEL	CYP21A2	NM_000500	human	genbank	54_36p	1	reviewed	in_frame_del	c.16_18	p.L9in_frame_del	0.796:0.973:0.975	NULL	-	(deletion:cds_exon[32114179,32114380])	no_errors
ANKS1A	23294	genome.wustl.edu	36	6	35093620	35093620	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	6	35093620	35093620	C	T	SNP	ANKS1A	NM_015245	human	genbank	54_36p	1	validated	nonsense	c.1816	p.R606*	1	NULL	-	-	no_errors
SLC18A1	6570	genome.wustl.edu	36	8	20082690	20082691	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	8	20082690	20082691	-	T	INS	SLC18A1	NM_003053	human	genbank	54_36p	-1	validated	frame_shift_ins	c.66_65	p.V23fs	1.000:0.998	NULL	-	-	no_errors
RB1CC1	9821	genome.wustl.edu	36	8	53749013	53749013	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	8	53749013	53749013	T	C	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	missense	c.947	p.D316G	1	NULL	superfamily_Prefoldin;superfamily_Ubiquitin-like	-	no_errors
NUP188	23511	genome.wustl.edu	36	9	130770618	130770618	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	9	130770618	130770618	G	A	SNP	NUP188	NM_015354	human	genbank	54_36p	1	validated	missense	c.598	p.V200M	1	NULL	superfamily_FAD-linked oxidases C-terminal domain	-	no_errors
KIAA0649	9858	genome.wustl.edu	36	9	137519770	137519770	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	e456f707-f0a0-4624-98bc-e9dfe779182b	697786b0-4757-40a7-9650-8c2f2e1774db	9	137519770	137519770	C	T	SNP	KIAA0649	NM_014811	human	genbank	54_36p	1	validated	missense	c.3593	p.T1198M	0.53	NULL	-	-	no_errors
