Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error
MT-ND5	4540	genome.wustl.edu	36	MT	13524	13524	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	MT	13524	13524	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1187	p.I396T	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
C20orf96	140680	genome.wustl.edu	36	20	207879	207879	+	Silent	SNP	G	G	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	20	207879	207879	G	T	SNP	C20orf96	NM_153269	human	genbank	54_36p	-1	predicted	silent	c.399	p.I133	0.112	NULL	NULL	-	no_errors
HS3ST6	64711	genome.wustl.edu	36	16	1901685	1901685	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	16	1901685	1901685	C	T	SNP	HS3ST6	NM_001009606	human	genbank	54_36p	-1	validated	silent	c.843	p.V281	0.986	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
RGS12	6002	genome.wustl.edu	36	4	3394061	3394061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	4	3394061	3394061	C	T	SNP	RGS12	NM_198229	human	genbank	54_36p	+1	reviewed	missense	c.2999	p.A1000V	1.000	superfamily_Ubiquitin-like,HMMPfam_RBD,HMMSmart_SM00455	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Ubiquitin-like,HMMPfam_RBD,HMMSmart_SM00455,HMMPfam_GoLoco,HMMSmart_SM00390	-	no_errors
CENPB	1059	genome.wustl.edu	36	20	3714420	3714420	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	20	3714420	3714420	C	G	SNP	CENPB	NM_001810	human	genbank	54_36p	-1	reviewed	missense	c.711	p.E237D	1.000	HMMPfam_DDE	HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE,HMMPfam_Cenp-B_dimeris,superfamily_SSF101160	-	no_errors
CALR	811	genome.wustl.edu	36	19	12910527	12910527	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	19	12910527	12910527	C	T	SNP	CALR	NM_004343	human	genbank	54_36p	+1	reviewed	missense	c.34	p.L12F	0.055	superfamily_Concanavalin A-like lectins/glucanases	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Calreticulin,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2,PatternScan_CALRETICULIN_REPEAT	-	no_errors
NOTCH3	4854	genome.wustl.edu	36	19	15134310	15134310	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	19	15134310	15134310	T	C	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	missense	c.5879	p.K1960R	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NOD,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
HIRA	7290	genome.wustl.edu	36	22	17776100	17776100	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	22	17776100	17776100	C	T	SNP	HIRA	NM_003325	human	genbank	54_36p	-1	reviewed	silent	c.117	p.K39	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_HIRA_B,HMMPfam_Hira	-	no_errors
POTEB	339010	genome.wustl.edu	36	15	19335826	19335826	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	15	19335826	19335826	C	T	SNP	POTEB	NM_207355	human	genbank	54_36p	-1	validated	missense	c.475	p.V159I	0.006	superfamily_Ankyrin repeat,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
DPYSL5	56896	genome.wustl.edu	36	2	26974904	26974904	+	Silent	SNP	C	C	G	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	2	26974904	26974904	C	G	SNP	DPYSL5	NM_020134	human	genbank	54_36p	+1	validated	silent	c.33	p.L11	1.000	superfamily_Metalo_hydrolase	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	-	no_errors
ENSG00000183566	0	genome.wustl.edu	36	20	31253078	31253078	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	20	31253078	31253078	C	A	SNP	ENSG00000183566	ENST00000375465	human	ensembl	54_36p	+1	known	missense	c.328	p.P110T	0.004	NULL	NULL	-	no_errors
BPI	671	genome.wustl.edu	36	20	36369448	36369448	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	20	36369448	36369448	G	A	SNP	BPI	NM_001725	human	genbank	54_36p	+1	reviewed	missense	c.208	p.D70N	0.015	superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP	superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2	-	no_errors
JPH2	57158	genome.wustl.edu	36	20	42222047	42222047	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	20	42222047	42222047	C	T	SNP	JPH2	NM_020433	human	genbank	54_36p	-1	reviewed	missense	c.794	p.S265N	1.000	NULL	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN,PatternScan_SUGAR_TRANSPORT_1,PatternScan_XYLOSE_ISOMERASE_1	-	no_errors
NFKBIE	4794	genome.wustl.edu	36	6	44335845	44335845	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	6	44335845	44335845	C	A	SNP	NFKBIE	NM_004556	human	genbank	54_36p	-1	validated	missense	c.1350	p.M450I	0.801	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
C21orf29	54084	genome.wustl.edu	36	21	44812114	44812114	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	21	44812114	44812114	G	T	SNP	C21orf29	NM_144991	human	genbank	54_36p	-1	provisional	missense	c.286	p.P96T	0.185	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP	-	no_errors
TINAG	27283	genome.wustl.edu	36	6	54322650	54322650	+	Silent	SNP	C	C	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	6	54322650	54322650	C	A	SNP	TINAG	NM_014464	human	genbank	54_36p	+1	validated	silent	c.1077	p.S359	1.000	superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1	HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN	-	no_errors
EEF1A2	1917	genome.wustl.edu	36	20	61590152	61590152	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	20	61590152	61590152	G	A	SNP	EEF1A2	NM_001958	human	genbank	54_36p	-1	reviewed	silent	c.1335	p.S445	0.988	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	-	no_errors
RTEL1	51750	genome.wustl.edu	36	20	61795037	61795037	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	20	61795037	61795037	C	G	SNP	RTEL1	NM_032957	human	genbank	54_36p	+1	reviewed	missense	c.2949	p.S983R	0.612	NULL	superfamily_SSF52540,HMMSmart_DEXDc2,HMMPfam_ResIII,HMMPfam_DEAD_2,HMMSmart_HELICc2,superfamily_SSF57850	-	no_errors
HKDC1	80201	genome.wustl.edu	36	10	70678272	70678272	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	10	70678272	70678272	A	C	SNP	HKDC1	NM_025130	human	genbank	54_36p	+1	validated	missense	c.1352	p.K451T	1.000	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES	-	no_errors
CDH15	1013	genome.wustl.edu	36	16	87786248	87786248	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	16	87786248	87786248	A	C	SNP	CDH15	NM_004933	human	genbank	54_36p	+1	reviewed	missense	c.1750	p.K584Q	0.000	superfamily_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
FARP1	10160	genome.wustl.edu	36	13	97881508	97881508	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	13	97881508	97881508	A	C	SNP	FARP1	NM_005766	human	genbank	54_36p	+1	reviewed	missense	c.2116	p.S706R	0.988	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
ENSG00000187900	0	genome.wustl.edu	36	3	99440432	99440432	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	3	99440432	99440432	C	A	SNP	ENSG00000187900	ENST00000341450	human	ensembl	54_36p	+1	known	missense	c.430	p.P144T	0.033	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
LPPR4	9890	genome.wustl.edu	36	1	99544773	99544773	+	Silent	SNP	G	G	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	1	99544773	99544773	G	T	SNP	LPPR4	NM_014839	human	genbank	54_36p	+1	reviewed	silent	c.1911	p.P637	0.549	NULL	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014	-	no_errors
NR5A1	2516	genome.wustl.edu	36	9	126302553	126302553	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	9	126302553	126302553	C	T	SNP	NR5A1	NM_004959	human	genbank	54_36p	-1	reviewed	silent	c.507	p.L169	0.838	superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
PLXNA1	5361	genome.wustl.edu	36	3	128231471	128231471	+	Silent	SNP	C	C	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	3	128231471	128231471	C	T	SNP	PLXNA1	NM_032242	human	genbank	54_36p	+1	validated	silent	c.4866	p.P1622	0.831	HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
KIAA1688	80728	genome.wustl.edu	36	8	145733986	145733986	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	8	145733986	145733986	C	G	SNP	KIAA1688	NM_025251	human	genbank	54_36p	-1	validated	missense	c.2541	p.E847D	1.000	HMMPfam_MyTH4	HMMSmart_SM00456,HMMPfam_WW,superfamily_WW domain,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
FAT2	2196	genome.wustl.edu	36	5	150914206	150914206	+	Silent	SNP	G	G	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	5	150914206	150914206	G	A	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	silent	c.3855	p.D1285	0.208	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
LOC645468	645468	genome.wustl.edu	36	6	167034404	167034404	+	RNA	SNP	C	G	G	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	6	167034404	167034404	C	G	SNP	LOC645468	XR_017635	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SH3PXD2B	285590	genome.wustl.edu	36	5	171741704	171741704	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	5	171741704	171741704	C	A	SNP	SH3PXD2B	NM_001017995	human	genbank	54_36p	-1	validated	missense	c.342	p.Q114H	1.000	superfamily_PX,HMMPfam_PX,HMMSmart_PX	superfamily_PX,HMMPfam_PX,HMMSmart_PX,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors
IGFN1	91156	genome.wustl.edu	36	1	199451422	199451422	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	1	199451422	199451422	G	A	SNP	IGFN1	NM_178275	human	genbank	54_36p	+1	validated	missense	c.608	p.G203E	0.497	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2	-	no_errors
NOP58	51602	genome.wustl.edu	36	2	202876370	202876370	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-04-1353-01A-01D-1526-09	TCGA-04-1353-11B-01D-1526-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	65c12882-87e1-445e-9797-9a4998cab3bd	36baba19-f6d1-4939-a5ec-9d3c456c8d9f	2	202876370	202876370	A	T	SNP	NOP58	NM_015934	human	genbank	54_36p	+1	provisional	missense	c.1556	p.K519M	1.000	NULL	HMMPfam_NOP5NT,HMMPfam_NOSIC,superfamily_SSF89124,HMMPfam_Nop	-	no_errors
